Contig-U11149-1
Contig ID Contig-U11149-1
Contig update 2002.12.18
Contig sequence
>Contig-U11149-1 (Contig-U11149-1Q) /CSM_Contig/Contig-U11149-1Q.Seq.d
TGAATACAATTGAAAAGAAACAAAAGAAAGTTGATGAAATCACTAAAGTA
TTAGCGGAGGAGATTACACCGACATTGGATAAACTCAGAGGTGAACGTAC
AAGTTATATGAAATTTACAAATAATCAAACTTTAATCGACCGTCTTCAAC
GTTTTATCATTGCCTATGAATATTATACATATGAAAAGAAATTAGAATCA
TCAGAGTTTGAATCATTTAAAGCAGAGATTGATAAGGGACAAAAGAGAAA
GAAAGATTTAACATTGAAATCAACCGATTTGAAGGCTAAGATTAGTGAAT
TGGCAAAACAAAGAGAGAAAGAGACCAATCTAGAGGAAATGGACCAACAG
GAACAAAAACTTTCAAAAGAGTTGGTTAAATATCAAACTTCACATAAACA
TCAAAAGGAATCATTGGATAAGGAAGAGGGTGCAATCAATAATTTAGCCA
ATACTCGTGAGGAGATTAAACAATCGATTCAACAAAAACAAAAAGAAAAA
CAATCAATGGAGAAGAAAATCCAATCAATCGTTGAAGAGAATCAACAAAT
CAATGCAGAATTAAAAACTTTACAAAATAAACACAATACAATGACCACAG
GTATTTCAACGGGTGCCGATGGTAGTTCAGCTGCAGAGGATGGTTCATAC
ACTGAACAATTGATGGAAGCTAAAAAAACTGCAGTAAATGCTGCATCTGA
ATATAAACAAGCGGAATTTCGTGTTAAACATTTACAAAGTGAATTAATTG
CAAAACGAAAAGCAATAACACAAGAACAAACAGATCATAAGAAATTACAA
GCAGAGCAAGAGCTAGTAGAGAGAGAAATCCAACAATTAACACGTTCAAT
TCAAGAGCTTCAATTGGATAATAGTAAACAACAAGAATTAACTGAGAAAA
AGCGTCAATTGGAACCATTGGTATCGAAATTACGTGAAGAGGTTGGTAAT
GCCTCTGCACAATTGAGTGGTTTAGAATTCAACTATACCGATCCTTCAAA
ATCATTCGATAGAAGTAAGGTTAAAGGTATCGTTGCAAATTTAATCACAC
TTAAAGATGTTGAAACTGCAACTGCTTTGGAAATTTGTGCAAGTGGTAAA
CTTTATAATATTGTAATCGAAGATGATGAAACTGGTAAAGCGTTACTCTC
AAAGGGTCAATTGAAGAGAAGGGTAACACTTCTCCCATTGAATAAAGTCG
AGGGTCGTTCTATTGATCCACAAAAGATTAAGAATGCACAAAAGATTGCA
CCAAATGGTGCAGTTAAACCAGCTATTGAGTTTGTTGAGTACGATAAAGA
ATTGCAACCTGCAATGAACTTTGTATTTGGTTCAACATTTATTGCAACCG
ATAAAAAGTATGCTCAAAAAGCGGCATTTGATTCATCGATTAAGGTTAGA
ACCATCTCTTTGGAAGGTGATGAATATAATCCTGCAGGTTCTTTAACTGG
TGGTAGTAGACCACCCTCTGGTTCAATTCTAACACAAATTCAACGTTTAA
ATGAAAATAATCGTTGTCTT----------TGGTTAGAAGCTGCAATTAA
AAAGCATACTTGGATAAAGAATGAGAAACAACTATTCAATAGACCTGGTA
GTGATTTCGATTTCAATGCTACAGATCCATCCAAAGCAAACTCTGAATAT
ATTAAACTTCAAGAGGAACAAGAGAAACTTTCCAAAACTATCAATAGAAA
GGTAATGAGTATGTTTGAAAAAGCCGAACAAGAATATCAAGAATTGATGG
AAAAAAAGAAAATCATTGAAAATGATAAGAGTAAAATTGAACATGTAATT
AGAGAATTGGATGAGAAAAAGAATGAATCACTTCGTACCACTTGGAAAAA
GGTAAATAAAGATTTCGGCTCAATATTTTCAACTCTCTTACCTGGTACCT
CTGCAAAATTGGAGCCACCAGAAGGTCAAAATGAATTATTTGGTCTTGAA
GTTAAAGTTGCATTTGGTGACGTTTGGAAAGAAACCCTCTCAGAGTTAAG
TGGTGGTCAAAAATCTTTATTAGCACTCTCTTTAATTCTCTCATTATTAC
TCTTTAAACCTGCTCCAATGTATATTCTAGATGAAATCGATGCTGCTCTC
GATCTTTCACATACTCAAAATATCGGTATGATGTTAAAACAACATTTCAC
AAGTTCTCAATTCATCGTTGTATCTCTTAAAGAAGGTATGTTTACAAATG
CAAATGTTTTATTTGAAACTAAATTTATTGATGGTGTTTCGAAAGTTCAT
AGAACTGTTTTCAATAAAAAAGATAAACAAGTGGTAAAAAGAAATAAATA
AAATTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

Gap gap included
Contig length 2348
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2057729
End point 2055380
Strand (PLUS/MINUS) MINUS
Number of clones 10
Number of EST 16
Link to clone list U11149
List of clone(s)

est1=AHA671F,1,627
est2=AHD824F,175,766
est3=AHF514F,381,1011
est4=CHO510Z,798,1362
est5=VHC690F,891,1520
est6=VHC742F,905,1231
est7=VFG482F,1010,1474
est8=AHA671Z,1521,2297
est9=VHC742Z,1553,2199
est10=AHF514Z,1577,2288
est11=AHP496Z,1635,2294
est12=VHC690Z,1642,2298
est13=VFG482Z,1737,2061
est14=VSK449F,1869,2077
est15=VSK449Z,1869,2049
est16=SSF607E,1940,2349
Translated Amino Acid sequence
NTIEKKQKKVDEITKVLAEEITPTLDKLRGERTSYMKFTNNQTLIDRLQRFIIAYEYYTY
EKKLESSEFESFKAEIDKGQKRKKDLTLKSTDLKAKISELAKQREKETNLEEMDQQEQKL
SKELVKYQTSHKHQKESLDKEEGAINNLANTREEIKQSIQQKQKEKQSMEKKIQSIVEEN
QQINAELKTLQNKHNTMTTGISTGADGSSAAEDGSYTEQLMEAKKTAVNAASEYKQAEFR
VKHLQSELIAKRKAITQEQTDHKKLQAEQELVEREIQQLTRSIQELQLDNSKQQELTEKK
RQLEPLVSKLREEVGNASAQLSGLEFNYTDPSKSFDRSKVKGIVANLITLKDVETATALE
ICASGKLYNIVIEDDETGKALLSKGQLKRRVTLLPLNKVEGRSIDPQKIKNAQKIAPNGA
VKPAIEFVEYDKELQPAMNFVFGSTFIATDKKYAQKAAFDSSIKVRTISLEGDEYNPAGS
LTGGSRPPSGSILTQIQRLNENNRCL---

---WLEAAIKKHTWIKNEKQLFNRPGSDFDFNATDPSKANSEYIKLQEEQEKLSKTINRK
VMSMFEKAEQEYQELMEKKKIIENDKSKIEHVIRELDEKKNESLRTTWKKVNKDFGSIFS
TLLPGTSAKLEPPEGQNELFGLEVKVAFGDVWKETLSELSGGQKSLLALSLILSLLLFKP
APMYILDEIDAALDLSHTQNIGMMLKQHFTSSQFIVVSLKEGMFTNANVLFETKFIDGVS
KVHRTVFNKKDKQVVKRNK*n*ikkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
*iqlkrnkrklmkslky*rrrlhrhwinsevnvqvi*nlqiikl*stvfnvlslpmniih
mkrn*nhqslnhlkqrlirdkrerki*h*nqpi*rlrlvnwqnkerkrpi*rkwtnrnkn
fqkswlniklhinikrnhwirkrvqsii*pilvrrlnnrfnknkkknnqwrrksnqslkr
inksmqn*klykintiq*pqvfqrvpmvvqlqrmvhtlnn*wklkklq*mlhlninkrnf
vlniykvn*lqnekq*hknkqiirnykqsks**reksnn*hvqfksfnwiivnnkn*lrk
svnwnhwyrnyvkrlvmplhn*vv*nstipilqnhsievrlkvslqi*shlkmlklqllw
kfvqvvnfiil*skmmklvkrysqrvn*reg*hfsh*iksrvvllihkrlrmhkrlhqmv
qlnqllsllstikncnlq*tlylvqhllqpiksmlkkrhlihrlrlepslwkvmniilqv
l*lvvvdhplvqf*hkfnv*mkiivv---

---WLEAAIKKHTWIKNEKQLFNRPGSDFDFNATDPSKANSEYIKLQEEQEKLSKTINRK
VMSMFEKAEQEYQELMEKKKIIENDKSKIEHVIRELDEKKNESLRTTWKKVNKDFGSIFS
TLLPGTSAKLEPPEGQNELFGLEVKVAFGDVWKETLSELSGGQKSLLALSLILSLLLFKP
APMYILDEIDAALDLSHTQNIGMMLKQHFTSSQFIVVSLKEGMFTNANVLFETKFIDGVS
KVHRTVFNKKDKQVVKRNK*n*ikkkkkkkkkkkkkkkk

Frame B:
eyn*ketkes**nh*sisggdytdig*tqr*tyklyeiyk*snfnrpsstfyhcl*ilyi
*keiriirv*ii*srd**gtkekerfnieinrfeg*d**igktkrerdqsrgngptgtkt
fkrvg*isnft*tskgiig*grgcnq*fsqys*gd*tidstktkrktingeenpinr*re
stnqcriknftk*tqyndhryfngcrw*fscrgwfih*tidgs*kncskcci*i*tsgis
c*tftk*incktksnntrtnrs*eitsrarasrernptintfnsrasig***ttrin*ek
asigtigieit*rgw*clctiewfriqlyrsfkiir*k*g*ryrckfnht*rc*ncncfg
nlckw*tl*ycnrr**nw*svtlkgsieekgntspie*srgsfy*stkd*ectkdctkwc
s*tsy*vc*vr*riatcnelciwfniycnr*kvcsksgi*fid*g*nhlfgr**i*scrf
fnww**ttlwfnsntnstfk*k*sls---

---g*klqlksilg*rmrnnysidlvvisismlqihpkqtlnilnfkrnkrnfpklsier
**vclkkpnknikn*wkkrkslkmirvklnm*lenwmrkrmnhfvplgkr*ikisaqyfq
lsylvplqnwshqkvkmnylvlklklhlvtfgkkpsqs*vvvknly*hsl*fshyyslnl
lqcif*mksmllsifhilkisv*c*nnisqvlnsslyllkkvclqmqmfylklnllmvfr
kfielfsikkinkw*keinkik*kkkkkkkkkkkkkkk

Frame C:
NTIEKKQKKVDEITKVLAEEITPTLDKLRGERTSYMKFTNNQTLIDRLQRFIIAYEYYTY
EKKLESSEFESFKAEIDKGQKRKKDLTLKSTDLKAKISELAKQREKETNLEEMDQQEQKL
SKELVKYQTSHKHQKESLDKEEGAINNLANTREEIKQSIQQKQKEKQSMEKKIQSIVEEN
QQINAELKTLQNKHNTMTTGISTGADGSSAAEDGSYTEQLMEAKKTAVNAASEYKQAEFR
VKHLQSELIAKRKAITQEQTDHKKLQAEQELVEREIQQLTRSIQELQLDNSKQQELTEKK
RQLEPLVSKLREEVGNASAQLSGLEFNYTDPSKSFDRSKVKGIVANLITLKDVETATALE
ICASGKLYNIVIEDDETGKALLSKGQLKRRVTLLPLNKVEGRSIDPQKIKNAQKIAPNGA
VKPAIEFVEYDKELQPAMNFVFGSTFIATDKKYAQKAAFDSSIKVRTISLEGDEYNPAGS
LTGGSRPPSGSILTQIQRLNENNRCL---

---vrscn*kayldke*ettiq*tw**frfqcyrsiqskl*iy*tsrgtretfqnyq*kg
neyv*ksrtrisridgkkenh*k**e*n*tcn*rig*eke*itsyhlekgk*rfrlnifn
sltwylckigatrrsk*iiws*s*sciw*rlernplrvkwwskifistlfnsliitl*tc
snvysr*nrccsrsftyskyrydvkttfhkfsihrcis*rryvykckcfi*n*iy*wcfe
ss*ncfq*kr*tsgkkk*iklnkkkkkkkkkkkkkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11149-1 (Contig-U11149-1Q)
/CSM_Contig/Contig-U11149-1Q.Seq.d
(2358 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11149-1 (Contig-U11149-1Q) /CSM_Contig/Conti... 3443 0.0
Contig-U12085-1 (Contig-U12085-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U01584-1 (Contig-U01584-1Q) /CSM_Contig/Conti... 40 0.011
Contig-U13899-1 (Contig-U13899-1Q) /CSM_Contig/Conti... 38 0.043
Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Conti... 38 0.043
Contig-U14389-1 (Contig-U14389-1Q) /CSM_Contig/Conti... 36 0.17
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti... 36 0.17
Contig-U13788-1 (Contig-U13788-1Q) /CSM_Contig/Conti... 36 0.17
Contig-U13522-1 (Contig-U13522-1Q) /CSM_Contig/Conti... 36 0.17
Contig-U13048-1 (Contig-U13048-1Q) /CSM_Contig/Conti... 36 0.17

>Contig-U11149-1 (Contig-U11149-1Q) /CSM_Contig/Contig-U11149-1Q.Seq.d
Length = 2358

Score = 3443 bits (1737), Expect = 0.0
Identities = 1795/1809 (99%)
Strand = Plus / Plus


Query: 501 caatcaatggagaagaaaatccaatcaatcgttgaagagaatcaacaaatcaatgcagaa 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatcaatggagaagaaaatccaatcaatcgttgaagagaatcaacaaatcaatgcagaa 560


Query: 561 ttaaaaactttacaaaataaacacaatacaatgaccacaggtatttcaacgggtgccgat 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaaaactttacaaaataaacacaatacaatgaccacaggtatttcaacgggtgccgat 620


Query: 621 ggtagttcagctgcagaggatggttcatacactgaacaattgatggaagctnnnnnnnct 680
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ggtagttcagctgcagaggatggttcatacactgaacaattgatggaagctaaaaaaact 680


Query: 681 gcagtaaatgctgcatctgaatataaacaagcggaatttcgtgttaaacatttacaaagt 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcagtaaatgctgcatctgaatataaacaagcggaatttcgtgttaaacatttacaaagt 740


Query: 741 gaattaattgcaaaacgaaaagcaataacacaagaacaaacagatcataagaaattacaa 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattaattgcaaaacgaaaagcaataacacaagaacaaacagatcataagaaattacaa 800


Query: 801 gcagagcaagagctagtagagagagaaatccaacaattaacacgttcaattcaagagctt 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcagagcaagagctagtagagagagaaatccaacaattaacacgttcaattcaagagctt 860


Query: 861 caattggataatagtaaacaacaagaattaactgagaaaaagcgtcaattggaaccattg 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caattggataatagtaaacaacaagaattaactgagaaaaagcgtcaattggaaccattg 920


Query: 921 gtatcgaaattacgtgaagaggttggtaatgcctctgcacaattgagtggtttagaattc 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtatcgaaattacgtgaagaggttggtaatgcctctgcacaattgagtggtttagaattc 980


Query: 981 aactataccgatccttcaaaatcattcgatagaagtaaggttaaaggtatcgttgcaaat 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 aactataccgatccttcaaaatcattcgatagaagtaaggttaaaggtatcgttgcaaat 1040


Query: 1041 ttaatcacacttaaagatgttgaaactgcaactgctttggaaatttgtgcaagtggtaaa 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ttaatcacacttaaagatgttgaaactgcaactgctttggaaatttgtgcaagtggtaaa 1100


Query: 1101 ctttataatattgtaatcgaagatgatgaaactggtaaagcgttactctcaaagggtcaa 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 ctttataatattgtaatcgaagatgatgaaactggtaaagcgttactctcaaagggtcaa 1160


Query: 1161 ttgaagagaagggtaacacttctcccattgaataaagtcgagggtcgttctattgatcca 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 ttgaagagaagggtaacacttctcccattgaataaagtcgagggtcgttctattgatcca 1220


Query: 1221 caaaagattaagaatgcacaaaagattgcaccaaatggtgcagttaaaccagctattgag 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 caaaagattaagaatgcacaaaagattgcaccaaatggtgcagttaaaccagctattgag 1280


Query: 1281 tttgttgagtacgataaagaattgcaacctgcaatgaactttgtatttggttcaacattt 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 tttgttgagtacgataaagaattgcaacctgcaatgaactttgtatttggttcaacattt 1340


Query: 1341 attgcaaccgataaaaagtatgctcaaaaagcggcatttgattcatcgattaaggttaga 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 attgcaaccgataaaaagtatgctcaaaaagcggcatttgattcatcgattaaggttaga 1400


Query: 1401 accatctctttggaaggtgatgaatataatcctgcaggttctttaactggtggtagtaga 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 accatctctttggaaggtgatgaatataatcctgcaggttctttaactggtggtagtaga 1460


Query: 1461 ccaccctctggttcaattctaacacaaattcaacgtttaaatgaaaataatcgttgtctt 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 ccaccctctggttcaattctaacacaaattcaacgtttaaatgaaaataatcgttgtctt 1520


Query: 1521 nnnnnnnnnntggttagaagctgcaattaaaaagcatacttggataaagaatgagaaaca 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 nnnnnnnnnntggttagaagctgcaattaaaaagcatacttggataaagaatgagaaaca 1580


Query: 1581 actattcaatagacctggtagtgatttcgatttcaatgctacagatccatccaaagcaaa 1640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 actattcaatagacctggtagtgatttcgatttcaatgctacagatccatccaaagcaaa 1640


Query: 1641 ctctgaatatattaaacttcaagaggaacaagagaaactttccaaaactatcaatagaaa 1700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 ctctgaatatattaaacttcaagaggaacaagagaaactttccaaaactatcaatagaaa 1700


Query: 1701 ggtaatgagtatgtttgaaaaagccgaacaagaatatcaagaattgatggnnnnnnngaa 1760
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1701 ggtaatgagtatgtttgaaaaagccgaacaagaatatcaagaattgatggaaaaaaagaa 1760


Query: 1761 aatcattgaaaatgataagagtaaaattgaacatgtaattagagaattggatgagaaaaa 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 aatcattgaaaatgataagagtaaaattgaacatgtaattagagaattggatgagaaaaa 1820


Query: 1821 gaatgaatcacttcgtaccacttggaaaaaggtaaataaagatttcggctcaatattttc 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1821 gaatgaatcacttcgtaccacttggaaaaaggtaaataaagatttcggctcaatattttc 1880


Query: 1881 aactctcttacctggtacctctgcaaaattggagccaccagaaggtcaaaatgaattatt 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1881 aactctcttacctggtacctctgcaaaattggagccaccagaaggtcaaaatgaattatt 1940


Query: 1941 tggtcttgaagttaaagttgcatttggtgacgtttggaaagaaaccctctcagagttaag 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941 tggtcttgaagttaaagttgcatttggtgacgtttggaaagaaaccctctcagagttaag 2000


Query: 2001 tggtggtcaaaaatctttattagcactctctttaattctctcattattactctttaaacc 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2001 tggtggtcaaaaatctttattagcactctctttaattctctcattattactctttaaacc 2060


Query: 2061 tgctccaatgtatattctagatgaaatcgatgctgctctcgatctttcacatactcaaaa 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2061 tgctccaatgtatattctagatgaaatcgatgctgctctcgatctttcacatactcaaaa 2120


Query: 2121 tatcggtatgatgttaaaacaacatttcacaagttctcaattcatcgttgtatctcttaa 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 tatcggtatgatgttaaaacaacatttcacaagttctcaattcatcgttgtatctcttaa 2180


Query: 2181 agaaggtatgtttacaaatgcaaatgttttatttgaaactaaatttattgatggtgtttc 2240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2181 agaaggtatgtttacaaatgcaaatgttttatttgaaactaaatttattgatggtgtttc 2240


Query: 2241 gaaagttcatagaactgttttcaataaaaaagataaacaagtggtaaaaagaaataaata 2300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2241 gaaagttcatagaactgttttcaataaaaaagataaacaagtggtaaaaagaaataaata 2300


Query: 2301 aaattaaat 2309
|||||||||
Sbjct: 2301 aaattaaat 2309


Score = 957 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Plus


Query: 1 tgaatacaattgaaaagaaacaaaagaaagttgatgaaatcactaaagtattagcggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaatacaattgaaaagaaacaaaagaaagttgatgaaatcactaaagtattagcggagg 60


Query: 61 agattacaccgacattggataaactcagaggtgaacgtacaagttatatgaaatttacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agattacaccgacattggataaactcagaggtgaacgtacaagttatatgaaatttacaa 120


Query: 121 ataatcaaactttaatcgaccgtcttcaacgttttatcattgcctatgaatattatacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataatcaaactttaatcgaccgtcttcaacgttttatcattgcctatgaatattatacat 180


Query: 181 atgaaaagaaattagaatcatcagagtttgaatcatttaaagcagagattgataagggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgaaaagaaattagaatcatcagagtttgaatcatttaaagcagagattgataagggac 240


Query: 241 aaaagagaaagaaagatttaacattgaaatcaaccgatttgaaggctaagattagtgaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaagagaaagaaagatttaacattgaaatcaaccgatttgaaggctaagattagtgaat 300


Query: 301 tggcaaaacaaagagagaaagagaccaatctagaggaaatggaccaacaggaacaaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggcaaaacaaagagagaaagagaccaatctagaggaaatggaccaacaggaacaaaaac 360


Query: 361 tttcaaaagagttggttaaatatcaaacttcacataaacatcaaaaggaatcattggata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttcaaaagagttggttaaatatcaaacttcacataaacatcaaaaggaatcattggata 420


Query: 421 aggaagagggtgcaatcaataatttagccaatactcgtgaggagattaaacaatcgattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggaagagggtgcaatcaataatttagccaatactcgtgaggagattaaacaatcgattc 480


Query: 481 aac 483
|||
Sbjct: 481 aac 483


>Contig-U12085-1 (Contig-U12085-1Q) /CSM_Contig/Contig-U12085-1Q.Seq.d
Length = 1563

Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 2287 aaaagaaataaataaaattaaat 2309
|||||||||||||||||||||||
Sbjct: 205 aaaagaaataaataaaattaaat 227


>Contig-U01584-1 (Contig-U01584-1Q) /CSM_Contig/Contig-U01584-1Q.Seq.d
Length = 901

Score = 40.1 bits (20), Expect = 0.011
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 2286 aaaaagaaataaataaaattaaat 2309
||||| ||||||||||||||||||
Sbjct: 843 aaaaaaaaataaataaaattaaat 866


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,808
Number of Sequences: 6905
Number of extensions: 31808
Number of successful extensions: 4115
Number of sequences better than 10.0: 181
length of query: 2358
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2342
effective length of database: 5,564,391
effective search space: 13031803722
effective search space used: 13031803722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11149-1 (Contig-U11149-1Q) /CSM_Contig/Contig-U11149-1Q.Seq.d
(2358 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ419654) Dictyostelium discoideum cDNA clone:ddv36c24, 5' ... 1249 0.0 1
(BJ384867) Dictyostelium discoideum cDNA clone:ddc51c03, 3' ... 1049 0.0 2
(BJ438230) Dictyostelium discoideum cDNA clone:ddv36c24, 3' ... 1001 0.0 2
(BJ356945) Dictyostelium discoideum cDNA clone:dda61p24, 3' ... 1001 0.0 2
(BJ351128) Dictyostelium discoideum cDNA clone:dda42k03, 3' ... 1001 0.0 2
(BJ348260) Dictyostelium discoideum cDNA clone:dda32m18, 3' ... 1001 0.0 2
(BJ330767) Dictyostelium discoideum cDNA clone:dda32m18, 5' ... 957 0.0 2
(BJ438074) Dictyostelium discoideum cDNA clone:ddv36d11, 3' ... 815 0.0 2
(BJ333285) Dictyostelium discoideum cDNA clone:dda42k03, 5' ... 660 0.0 3
(BJ332173) Dictyostelium discoideum cDNA clone:dda38p06, 5' ... 613 0.0 3
(BJ413002) Dictyostelium discoideum cDNA clone:ddv13d22, 5' ... 914 0.0 1
(BJ419494) Dictyostelium discoideum cDNA clone:ddv36d11, 5' ... 630 e-176 1
(AU072976) Dictyostelium discoideum slug cDNA, clone SSF607. 472 e-128 1
(C92876) Dictyostelium discoideum slug cDNA, clone SSF607. 278 9e-70 1
(BJ431331) Dictyostelium discoideum cDNA clone:ddv13d22, 3' ... 137 2e-27 1
(FC798906) CBGC25708.fwd CBGC Lottia gigantea 15h 18h embryo... 62 6e-25 4
(FC798905) CBGC25708.rev CBGC Lottia gigantea 15h 18h embryo... 62 6e-25 4
(FC684124) CAXX17452.rev CAXX Lottia gigantea from male gona... 62 3e-20 4
(AX489219) Sequence 6519 from Patent WO02053728. 68 3e-17 6
(AR549615) Sequence 4746 from patent US 6747137. 68 4e-15 5
(AW059200) fe11a05.y1 Zebrafish WashU MPIMG EST Danio rerio ... 74 2e-12 2
(CT686490) Danio rerio EST, clone ZF_mu_239g12 5'. 74 2e-12 2
(CT633288) Danio rerio EST, clone ZF_mu_61h16 5'. 74 2e-12 2
(EH539992) FDR202-P00011-DEPE-F_N11 FDR202 Danio rerio cDNA ... 74 2e-12 2
(CR382134) Debaryomyces hansenii chromosome B of strain CBS7... 60 3e-11 2
(EE305196) AGENCOURT_85455694 NIH_ZGC_23 Danio rerio cDNA cl... 66 5e-10 2
(BM036624) fu80c10.y1 Gong zebrafish testis Danio rerio cDNA... 60 2e-08 2
(BX548248) Zebrafish DNA sequence from clone DKEY-245P14 in ... 74 3e-08 1
(BX537320) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 74 3e-08 1
(BX470210) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 74 3e-08 1
(EH561153) FDR202-P00011-DEPE-R_N11 FDR202 Danio rerio cDNA ... 74 3e-08 1
(EB989988) 15936741 ZF42 Danio rerio cDNA clone 4272156, mRN... 74 3e-08 1
(EY486810) CBBP15407.rev CBBP Hirudo medicinalis hermaphrodi... 50 7e-08 2
(FE421979) CBTX2966.rev CBTX_Daphnia_pulex_Chosen_One_Librar... 62 8e-08 2
(FE421980) CBTX2966.fwd CBTX_Daphnia_pulex_Chosen_One_Librar... 62 8e-08 2
(FE331194) CAOB579.rev CAOB_Daphnia_pulex_Log50_Library_15 D... 62 9e-08 2
(EY479782) CBBP10471.rev CBBP Hirudo medicinalis hermaphrodi... 50 9e-08 2
(FC175999) 1106908905323 BABEVPN-C-01-1-7KB Papio anubis cDN... 46 1e-07 2
(EX513000) RR_EG1147A51e01.esd.z EG1 Schistosoma mansoni cDN... 56 1e-07 2
(CD160395) ML1-0065P-V207-H06-U.B ML1-0065 Schistosoma manso... 56 2e-07 2
(CD160082) ML1-0065P-V170-D08-U.B ML1-0065 Schistosoma manso... 56 2e-07 2
(CD073461) MA3-0001U-L244-F09-U.B MA3-0001 Schistosoma manso... 56 3e-07 2
(AL396205) T7 end of clone AR0AA028G12 of library AR0AA from... 36 6e-07 3
(DT599921) she01-15ms12-a11 She01 Saruma henryi cDNA clone s... 48 1e-06 2
(CU639416) Zebrafish DNA sequence from clone CH211-191A10. 66 3e-06 3
(CT660055) Danio rerio EST, clone ZF_mu_1n05 3'. 66 7e-06 1
(EV561778) DR_4WM_3S03_E05 4-week-old testis subtracted 1 (T... 66 7e-06 1
(BB890567) Macaca fascicularis cDNA clone: Qlv-U398A-D11, 3'... 44 2e-05 3
(CT673854) Danio rerio EST, clone ZF_mu_198h20 3'. 64 3e-05 1
(AI884141) fc74c04.x1 Zebrafish WashU MPIMG EST Danio rerio ... 64 3e-05 1
(FE407307) CBTT5267.rev CBTT_Daphnia_pulex_Chosen_One_Librar... 62 1e-04 1
(FE379275) CBNS3793.rev CBNS_Daphnia_pulex_Chosen_One_Librar... 62 1e-04 1
(CD160066) ML1-0065P-V170-B09-U.B ML1-0065 Schistosoma manso... 56 3e-04 2
(AL408664) T3 end of clone AV0AA010A03 of library AV0AA from... 42 7e-04 3
(AI601393) fc10f07.x1 Zebrafish WashU MPIMG EST Danio rerio ... 58 0.002 1
(FE360477) CBNN18701.rev CBNN_Daphnia_pulex_Chosen_One_Libra... 58 0.002 1
(CN772412) tad81c06.y1 Hydra EST Darmstadt I Hydra magnipapi... 48 0.002 2
(AA645962) vn13g08.r1 Stratagene mouse heart (#937316) Mus m... 46 0.003 2
(CN565387) tag24h01.y1 Hydra EST -Kiel 1 Hydra magnipapillat... 48 0.003 2
(BG145775) uu98d01.y1 Soares_mouse_NMGB_bcell Mus musculus c... 46 0.003 2
(BG077844) H3021F09-5 NIA Mouse 15K cDNA Clone Set Mus muscu... 46 0.003 2
(CA526541) 8013-28 Mouse E14.5 retina lambda ZAP II Library ... 46 0.003 2
(CD079012) MA3-9999U-L244-F09-U.G MA3-0001 Schistosoma manso... 56 0.003 2
(FK913958) EST_lsal_evj_950562 lsalevj mixed_tissue_mixed_st... 50 0.003 2
(FK913957) EST_lsal_evj_935202 lsalevj mixed_tissue_mixed_st... 50 0.003 2
(CV074555) AGENCOURT_31479232 NIH_MGC_251 Rattus norvegicus ... 46 0.004 2
(CB194205) AGENCOURT_11259378 NIH_MGC_135 Mus musculus cDNA ... 46 0.004 2
(BC071232) Mus musculus structural maintenance of chromosome... 46 0.005 3
(DV057941) MONTH14_05_A23.x1 FH MONTH14 Mus musculus cDNA cl... 46 0.005 2
(AY808362) Schistosoma japonicum SJCHGC04631 protein mRNA, p... 44 0.005 2
(CV747414) SJL_33_001__3-1__05.T3_007.ab1 SJL Schistosoma ja... 44 0.005 2
(CV912632) PF007B10 sporangia, cleaving Phytophthora infesta... 56 0.006 1
(AJ534939) Mus musculus mRNA for SMC2 protein. 46 0.006 3
(BC094380) Mus musculus structural maintenance of chromosome... 46 0.013 3
(U42385) Mus musculus fibroblast growth factor inducible gen... 46 0.013 2
(AK145341) Mus musculus 4 days embryo whole body cDNA, RIKEN... 46 0.014 3
(EV100991) 0093314 Brassica napus Leaf library Brassica napu... 54 0.015 2
(EV101077) 0093400 Brassica napus Leaf library Brassica napu... 54 0.015 2
(AB168882) Macaca fascicularis testis cDNA, clone: QtsA-1555... 44 0.019 2
(BZ521721) BOKBB43TF BO_10_15_KB_nuc Brassica oleracea genom... 54 0.025 1
(DY023884) 53COT5_T3_016_H11_05SEP2004_081 Brassica napus 36... 54 0.025 1
(BG802080) 0124-56 Mouse E14.5 retina lambda ZAP II Library ... 42 0.036 2
(EJ921417) 1093018640574 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.050 4
(EJ835611) 1093017630132 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.054 4
(AM460044) Vitis vinifera contig VV78X092507.10, whole genom... 38 0.069 2
(EC988264) WIN1133.C21_D13 Muscat Hamburg pre-veraison berry... 38 0.078 2
(CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 52 0.099 1
(DY812467) CTOX21218.b1_D01.ab1 CTO(XYZ) dandelion Taraxacum... 52 0.099 1
(DY812075) CTOX20794.b2_C15.ab1 CTO(XYZ) dandelion Taraxacum... 52 0.099 1
(EY980605) CATH1139.rev CATH Sporobolomyces roseus IAM 13481... 52 0.099 1
(DQ332597) Synthetic construct Saccharomyces cerevisiae clon... 38 0.15 4
(EA396750) Sequence 45574 from patent US 7314974. 38 0.15 4
(AB045111) Schizosaccharomyces pombe spe2 gene for S-adenosy... 42 0.18 2
(EW730156) RS2B443JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ... 40 0.20 3
(EA377416) Sequence 26239 from patent US 7314974. 42 0.23 2
(U05820) Saccharomyces cerevisiae DA-box protein Smc2p (SMC2... 38 0.25 4
(BD436927) Human Genes and Gene Expression Products. 38 0.42 2
(AX247460) Sequence 2390 from Patent WO0166753. 38 0.42 2
(BD436926) Human Genes and Gene Expression Products. 38 0.46 2
(AX247459) Sequence 2389 from Patent WO0166753. 38 0.46 2

>(BJ419654) Dictyostelium discoideum cDNA clone:ddv36c24, 5' end,
single read.
Length = 630

Score = 1249 bits (630), Expect = 0.0
Identities = 630/630 (100%)
Strand = Plus / Plus


Query: 891 actgagaaaaagcgtcaattggaaccattggtatcgaaattacgtgaagaggttggtaat 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgagaaaaagcgtcaattggaaccattggtatcgaaattacgtgaagaggttggtaat 60


Query: 951 gcctctgcacaattgagtggtttagaattcaactataccgatccttcaaaatcattcgat 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcctctgcacaattgagtggtttagaattcaactataccgatccttcaaaatcattcgat 120


Query: 1011 agaagtaaggttaaaggtatcgttgcaaatttaatcacacttaaagatgttgaaactgca 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaagtaaggttaaaggtatcgttgcaaatttaatcacacttaaagatgttgaaactgca 180


Query: 1071 actgctttggaaatttgtgcaagtggtaaactttataatattgtaatcgaagatgatgaa 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actgctttggaaatttgtgcaagtggtaaactttataatattgtaatcgaagatgatgaa 240


Query: 1131 actggtaaagcgttactctcaaagggtcaattgaagagaagggtaacacttctcccattg 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actggtaaagcgttactctcaaagggtcaattgaagagaagggtaacacttctcccattg 300


Query: 1191 aataaagtcgagggtcgttctattgatccacaaaagattaagaatgcacaaaagattgca 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataaagtcgagggtcgttctattgatccacaaaagattaagaatgcacaaaagattgca 360


Query: 1251 ccaaatggtgcagttaaaccagctattgagtttgttgagtacgataaagaattgcaacct 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccaaatggtgcagttaaaccagctattgagtttgttgagtacgataaagaattgcaacct 420


Query: 1311 gcaatgaactttgtatttggttcaacatttattgcaaccgataaaaagtatgctcaaaaa 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcaatgaactttgtatttggttcaacatttattgcaaccgataaaaagtatgctcaaaaa 480


Query: 1371 gcggcatttgattcatcgattaaggttagaaccatctctttggaaggtgatgaatataat 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcggcatttgattcatcgattaaggttagaaccatctctttggaaggtgatgaatataat 540


Query: 1431 cctgcaggttctttaactggtggtagtagaccaccctctggttcaattctaacacaaatt 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cctgcaggttctttaactggtggtagtagaccaccctctggttcaattctaacacaaatt 600


Query: 1491 caacgtttaaatgaaaataatcgttgtctt 1520
||||||||||||||||||||||||||||||
Sbjct: 601 caacgtttaaatgaaaataatcgttgtctt 630

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,597,930,828
Number of extensions: 154402166
Number of successful extensions: 13139009
Number of sequences better than 10.0: 198
Length of query: 2358
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2334
Effective length of database: 97,308,875,965
Effective search space: 227118916502310
Effective search space used: 227118916502310
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11149-1 (Contig-U11149-1Q) /CSM_Contig/Contig-U11149-1Q.Seq.d
(2358 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AP006757_32(AP006757|pid:none) Oryza sativa Japonica Group genom... 319 2e-85
AF306547_1(AF306547|pid:none) Arabidopsis thaliana SMC2-1 (SMC2)... 317 9e-85
AF271730_1(AF271730|pid:none) Arabidopsis thaliana SMC2-like con... 317 2e-84
BX548248_5(BX548248|pid:none) Zebrafish DNA sequence from clone ... 290 2e-76
BC144163_1(BC144163|pid:none) Homo sapiens structural maintenanc... 290 2e-76
(O95347) RecName: Full=Structural maintenance of chromosomes pro... 290 2e-76
U42385_1(U42385|pid:none) Mus musculus fibroblast growth factor ... 288 5e-76
AL732619_2(AL732619|pid:none) Mouse DNA sequence from clone RP23... 288 5e-76
BC071232_1(BC071232|pid:none) Mus musculus structural maintenanc... 287 1e-75
(P50533) RecName: Full=Structural maintenance of chromosomes pro... 286 2e-75
AK292599_1(AK292599|pid:none) Homo sapiens cDNA FLJ78259 complet... 286 2e-75
AF092563_1(AF092563|pid:none) Homo sapiens chromosome-associated... 286 2e-75
BC032705_1(BC032705|pid:none) Homo sapiens structural maintenanc... 280 1e-73
BC044141_1(BC044141|pid:none) Danio rerio structural maintenance... 279 3e-73
AJ535204_1(AJ535204|pid:none) Anopheles gambiae mRNA for SMC2 pr... 276 3e-72
(Q90988) RecName: Full=Structural maintenance of chromosomes pro... 270 1e-70
AE017347_428(AE017347|pid:none) Cryptococcus neoformans var. neo... 267 1e-69
CP000498_495(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 265 4e-69
AM920430_68(AM920430|pid:none) Penicillium chrysogenum Wisconsin... 262 5e-68
AM270003_32(AM270003|pid:none) Aspergillus niger contig An02c008... 259 2e-67
FN357716_14(FN357716|pid:none) Schistosoma mansoni genome sequen... 259 3e-67
AY808362_1(AY808362|pid:none) Schistosoma japonicum SJCHGC04631 ... 258 9e-67
AM478528_1(AM478528|pid:none) Vitis vinifera contig VV78X248949.... 256 2e-66
(P41003) RecName: Full=Structural maintenance of chromosomes pro... 246 4e-63
CR382124_663(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 241 7e-62
S51623(S51623)cut14 protein - fission yeast (Schizosaccharomyces... 236 4e-60
D30787_1(D30787|pid:none) Schizosaccharomyces pombe gene for cut... 236 4e-60
AE016820_605(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 234 1e-59
AY069344_1(AY069344|pid:none) Drosophila melanogaster LD05471 fu... 231 9e-59
BT023498_1(BT023498|pid:none) Drosophila melanogaster LD32453 fu... 231 9e-59
AE013599_2069(AE013599|pid:none) Drosophila melanogaster chromos... 231 9e-59
(P38989) RecName: Full=Structural maintenance of chromosomes pro... 225 6e-57
CU928169_197(CU928169|pid:none) Kluyveromyces thermotolerans str... 223 2e-56
CR382132_1031(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 219 4e-55
CR380950_222(CR380950|pid:none) Candida glabrata strain CBS138 c... 218 6e-55
AM910996_174(AM910996|pid:none) Plasmodium knowlesi strain H chr... 216 3e-54
AL844509_184(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 215 7e-54
FN392322_103(FN392322|pid:none) Pichia pastoris GS115 chromosome... 214 1e-53
CR940353_373(CR940353|pid:none) Theileria annulata strain Ankara... 207 1e-51
AF113673_1(AF113673|pid:none) Homo sapiens clone FLB1433 PRO0324... 182 4e-44
AY528741_1(AY528741|pid:none) Trypanosoma cruzi structural maint... 174 1e-41
CT005244_41(CT005244|pid:none) Leishmania major strain Friedlin,... 173 3e-41
AY810267_1(AY810267|pid:none) Schistosoma japonicum SJCHGC08207 ... 157 2e-36
CP000881_125(CP000881|pid:none) Hemiselmis andersenii chromosome... 148 1e-33
AJ543649_1(AJ543649|pid:none) Pyrococcus furiosus smc gene. 118 1e-24
AL391737_117(AL391737|pid:none) chromosome I of strain GB-M1 of ... 117 2e-24
AJ248284_61(AJ248284|pid:none) Pyrococcus abyssi complete genome... 115 9e-24
BA000001_1852(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 115 9e-24
CP001130_480(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co... 106 2e-23
CP001229_945(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 108 9e-22
CP000743_970(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 105 6e-21
AE000657_451(AE000657|pid:none) Aquifex aeolicus VF5, complete g... 105 7e-21
AC116979_69(AC116979|pid:none) Dictyostelium discoideum chromoso... 100 4e-19
(Q552D9) RecName: Full=Structural maintenance of chromosome prot... 100 4e-19
BX950229_1397(BX950229|pid:none) Methanococcus maripaludis strai... 99 9e-19
CP000745_636(CP000745|pid:none) Methanococcus maripaludis C7, co... 98 2e-18
AP008934_1535(AP008934|pid:none) Staphylococcus saprophyticus su... 97 3e-18
CP000609_181(CP000609|pid:none) Methanococcus maripaludis C5, co... 97 3e-18
A64505(A64505)P115 homolog - Methanococcus jannaschii 97 3e-18
CP001344_134(CP001344|pid:none) Cyanothece sp. PCC 7425, complet... 96 4e-18
A72287(A72287) hypothetical protein TM1182 - Thermotoga maritima... 96 4e-18
AL732619_3(AL732619|pid:none) Mouse DNA sequence from clone RP23... 96 8e-18
CP000916_1394(CP000916|pid:none) Thermotoga neapolitana DSM 4359... 96 8e-18
CP000702_1548(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 94 2e-17
CR380954_113(CR380954|pid:none) Candida glabrata strain CBS138 c... 94 2e-17
FN357337_20(FN357337|pid:none) Schistosoma mansoni genome sequen... 94 3e-17
CP000969_1610(CP000969|pid:none) Thermotoga sp. RQ2, complete ge... 94 3e-17
CP001037_5238(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 93 4e-17
CP001022_1868(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 93 4e-17
T31550(T31550)hypothetical protein Y47D3A.26 - Caenorhabditis el... 93 4e-17
AP006716_1680(AP006716|pid:none) Staphylococcus haemolyticus JCS... 93 5e-17
BX571856_1184(BX571856|pid:none) Staphylococcus aureus subsp. au... 92 8e-17
AM180088_269(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ... 92 1e-16
CP000726_2220(CP000726|pid:none) Clostridium botulinum A str. AT... 91 1e-16
AP009351_1150(AP009351|pid:none) Staphylococcus aureus subsp. au... 91 1e-16
AP009324_1225(AP009324|pid:none) Staphylococcus aureus subsp. au... 91 1e-16
CP000422_792(CP000422|pid:none) Pediococcus pentosaceus ATCC 257... 91 1e-16
AJ938182_1098(AJ938182|pid:none) Staphylococcus aureus RF122 com... 91 2e-16
CP000728_2381(CP000728|pid:none) Clostridium botulinum F str. La... 91 2e-16
CU928180_422(CU928180|pid:none) Kluyveromyces thermotolerans str... 91 2e-16
CP000589_198(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 91 2e-16
CP000939_2369(CP000939|pid:none) Clostridium botulinum B1 str. O... 90 3e-16
AE015929_909(AE015929|pid:none) Staphylococcus epidermidis ATCC ... 90 3e-16
CP001581_2583(CP001581|pid:none) Clostridium botulinum A2 str. K... 90 3e-16
BA000033_1117(BA000033|pid:none) Staphylococcus aureus subsp. au... 90 3e-16
AE017344_284(AE017344|pid:none) Cryptococcus neoformans var. neo... 90 3e-16
CR954209_212(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 90 3e-16
CP001098_719(CP001098|pid:none) Halothermothrix orenii H 168, co... 90 4e-16
CP001083_2568(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 90 4e-16
(P51834) RecName: Full=Chromosome partition protein smc; &G6970... 90 4e-16
AL009126_1651(AL009126|pid:none) Bacillus subtilis subsp. subtil... 90 4e-16
CP000777_1335(CP000777|pid:none) Leptospira biflexa serovar Pato... 90 4e-16
CP000117_4660(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 89 5e-16
BC133260_1(BC133260|pid:none) Xenopus laevis cDNA clone IMAGE:69... 89 7e-16
AM114193_879(AM114193|pid:none) Uncultured methanogenic archaeon... 89 9e-16
AE010300_1308(AE010300|pid:none) Leptospira interrogans serovar ... 89 9e-16
AE016823_2343(AE016823|pid:none) Leptospira interrogans serovar ... 89 9e-16
AJ543646_1(AJ543646|pid:none) Geobacillus stearothermophilus smc... 89 9e-16
AE016814_5(AE016814|pid:none) Ashbya gossypii (= Eremothecium go... 89 9e-16
AE1947(AE1947) chromosome segregation protein [imported] - Nosto... 88 1e-15
CP000382_1316(CP000382|pid:none) Clostridium novyi NT, complete ... 88 2e-15
AF496667_1(AF496667|pid:none) Trypanosoma cruzi putative structu... 88 2e-15
CP000557_1035(CP000557|pid:none) Geobacillus thermodenitrificans... 88 2e-15
CP000029_783(CP000029|pid:none) Staphylococcus epidermidis RP62A... 87 2e-15
CP000348_1780(CP000348|pid:none) Leptospira borgpetersenii serov... 87 2e-15
CP000350_912(CP000350|pid:none) Leptospira borgpetersenii serova... 87 2e-15
AJ535316_1(AJ535316|pid:none) Xenopus laevis mRNA for structural... 87 3e-15
BA000039_1924(BA000039|pid:none) Thermosynechococcus elongatus B... 87 4e-15
BT023768_1(BT023768|pid:none) Drosophila melanogaster RE14758 fu... 87 4e-15
S70553(S70553) chromosome-associated protein - fruit fly (Drosop... 87 4e-15
AE014298_2532(AE014298|pid:none) Drosophila melanogaster chromos... 87 4e-15
BC152521_1(BC152521|pid:none) Danio rerio structural maintenance... 86 5e-15
(P47037) RecName: Full=Structural maintenance of chromosomes pro... 86 5e-15
AF426167_1(AF426167|pid:none) Lactococcus lactis SMC protein gen... 86 6e-15
AE005176_803(AE005176|pid:none) Lactococcus lactis subsp. lactis... 86 6e-15
AK315845_1(AK315845|pid:none) Homo sapiens cDNA, FLJ79494 comple... 86 6e-15
(Q5R4K5) RecName: Full=Structural maintenance of chromosomes pro... 86 6e-15
AF067163_1(AF067163|pid:none) Homo sapiens bamacan homolog mRNA,... 86 6e-15
EF147209_1(EF147209|pid:none) Populus trichocarpa clone WS01229_... 86 6e-15
AK005647_1(AK005647|pid:none) Mus musculus adult male testis cDN... 86 6e-15
CP000425_777(CP000425|pid:none) Lactococcus lactis subsp. cremor... 86 8e-15
AJ532588_1(AJ532588|pid:none) Gallus gallus mRNA for cohesin com... 86 8e-15
CP000922_1745(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 86 8e-15
BX649294_1(BX649294|pid:none) Zebrafish DNA sequence from clone ... 86 8e-15
AD1672(AD1672) Smc protein essential for chromosome condensation... 85 1e-14
AM494945_1(AM494945|pid:none) Leishmania braziliensis chromosome... 85 1e-14
AE004437_269(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 85 1e-14
CP001056_1175(CP001056|pid:none) Clostridium botulinum B str. Ek... 85 1e-14
CP001176_3794(CP001176|pid:none) Bacillus cereus B4264, complete... 85 1e-14
AE016877_3658(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 85 1e-14
CP000885_2413(CP000885|pid:none) Clostridium phytofermentans ISD... 84 2e-14
CR382139_69(CR382139|pid:none) Debaryomyces hansenii strain CBS7... 84 2e-14
CP000559_1003(CP000559|pid:none) Methanocorpusculum labreanum Z,... 84 2e-14
CT005247_1(CT005247|pid:none) Leishmania major strain Friedlin, ... 84 2e-14
BC044408_1(BC044408|pid:none) Danio rerio structural maintenance... 84 2e-14
CP000227_3532(CP000227|pid:none) Bacillus cereus Q1, complete ge... 84 2e-14
CP000485_3292(CP000485|pid:none) Bacillus thuringiensis str. Al ... 84 2e-14
AM270009_10(AM270009|pid:none) Aspergillus niger contig An02c014... 84 2e-14
AE017194_3859(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 84 2e-14
AE016879_3656(AE016879|pid:none) Bacillus anthracis str. Ames, c... 84 2e-14
CP000866_647(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 84 2e-14
BC165249_1(BC165249|pid:none) Danio rerio structural maintenance... 84 2e-14
CP001283_3772(CP001283|pid:none) Bacillus cereus AH820, complete... 84 2e-14
CP001186_3860(CP001186|pid:none) Bacillus cereus G9842, complete... 84 3e-14
CR382121_10(CR382121|pid:none) Kluyveromyces lactis strain NRRL ... 84 3e-14
CP001576_356(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 84 3e-14
BA000004_2487(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 83 4e-14
CP000879_1305(CP000879|pid:none) Petrotoga mobilis SJ95, complet... 83 4e-14
(O97594) RecName: Full=Structural maintenance of chromosomes pro... 83 4e-14
BA000035_1970(BA000035|pid:none) Corynebacterium efficiens YS-31... 83 4e-14
AJ279087_1(AJ279087|pid:none) Trypanosoma brucei putative SMC3 g... 83 4e-14
AC159455_11(AC159455|pid:none) Trypanosoma brucei chromosome 5 c... 83 4e-14
AJ504805_1(AJ504805|pid:none) Arabidopsis thaliana mRNA for SMC3... 83 5e-14
AP006627_2289(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 83 5e-14
AK221283_1(AK221283|pid:none) Arabidopsis thaliana mRNA for puta... 83 5e-14
CP000780_2175(CP000780|pid:none) Candidatus Methanoregula boonei... 83 5e-14
EU016662_14(EU016662|pid:none) Uncultured Group I marine crenarc... 83 5e-14
EU016634_28(EU016634|pid:none) Uncultured Group I marine crenarc... 83 5e-14
CP001615_2868(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 82 7e-14
AE017262_1811(AE017262|pid:none) Listeria monocytogenes str. 4b ... 82 7e-14
CP000240_2860(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 82 9e-14
AJ543640_1(AJ543640|pid:none) Corynebacterium diphtheriae SMC ge... 82 9e-14
CP000903_3573(CP000903|pid:none) Bacillus weihenstephanensis KBA... 82 9e-14
CP000923_1678(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 82 1e-13
CP000813_1476(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 82 1e-13
AP008230_2655(AP008230|pid:none) Desulfitobacterium hafniense Y5... 81 1e-13
AM778958_371(AM778958|pid:none) Microcystis aeruginosa PCC 7806 ... 81 1e-13
AP009044_1987(AP009044|pid:none) Corynebacterium glutamicum R DN... 81 1e-13
CP000141_1403(CP000141|pid:none) Carboxydothermus hydrogenoforma... 81 1e-13
CR931997_1202(CR931997|pid:none) Corynebacterium jeikeium K411 c... 81 1e-13
AX764135_1(AX764135|pid:none) Sequence 53 from Patent WO03040289... 81 1e-13
AJ543651_1(AJ543651|pid:none) Synechococcus sp. PCC 7002 smc gen... 81 2e-13
CP001078_1122(CP001078|pid:none) Clostridium botulinum E3 str. A... 81 2e-13
AD1300(AD1300) Smc protein essential for chromosome condensation... 80 3e-13
AP008955_3621(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 80 3e-13
CR382127_21(CR382127|pid:none) Yarrowia lipolytica strain CLIB12... 80 3e-13
(P97690) RecName: Full=Structural maintenance of chromosomes pro... 80 3e-13
AE017333_1719(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 80 3e-13
AP009152_1052(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 80 3e-13
CP000246_1928(CP000246|pid:none) Clostridium perfringens ATCC 13... 80 4e-13
S65799(S65799) chromosome scaffold protein sudA - Emericella nid... 80 4e-13
AL445565_187(AL445565|pid:none) Mycoplasma pulmonis (strain UAB ... 79 6e-13
CP000477_1140(CP000477|pid:none) Methanosaeta thermophila PT, co... 79 6e-13
BX293980_451(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 79 7e-13
CP000393_1301(CP000393|pid:none) Trichodesmium erythraeum IMS101... 79 7e-13
CP001033_1056(CP001033|pid:none) Streptococcus pneumoniae CGSP14... 79 7e-13
AY579200_1(AY579200|pid:none) Tetrahymena thermophila condensin ... 79 7e-13
BA000016_1716(BA000016|pid:none) Clostridium perfringens str. 13... 79 1e-12
CP000724_2658(CP000724|pid:none) Alkaliphilus metalliredigens QY... 79 1e-12
AC007290_6(AC007290|pid:none) Arabidopsis thaliana chromosome 2 ... 78 1e-12
CP001104_1013(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 78 1e-12
F84669(F84669)probable chromosome associated protein [imported] ... 78 1e-12
CP001034_1349(CP001034|pid:none) Natranaerobius thermophilus JW/... 77 1e-12
AP009552_1107(AP009552|pid:none) Microcystis aeruginosa NIES-843... 78 2e-12
FM211187_1084(FM211187|pid:none) Streptococcus pneumoniae ATCC 7... 78 2e-12
CR380952_79(CR380952|pid:none) Candida glabrata strain CBS138 ch... 78 2e-12
CP000829_416(CP000829|pid:none) Streptococcus pyogenes NZ131, co... 78 2e-12
CP001601_1593(CP001601|pid:none) Corynebacterium aurimucosum ATC... 78 2e-12
AE004092_382(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c... 78 2e-12
CP000568_919(CP000568|pid:none) Clostridium thermocellum ATCC 27... 78 2e-12
AE017126_71(AE017126|pid:none) Prochlorococcus marinus subsp. ma... 77 2e-12
CP000806_3293(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 77 2e-12
CP000387_1480(CP000387|pid:none) Streptococcus sanguinis SK36, c... 77 2e-12
FN392320_1000(FN392320|pid:none) Pichia pastoris GS115 chromosom... 77 2e-12
BA000030_2664(BA000030|pid:none) Streptomyces avermitilis MA-468... 77 2e-12
CP000095_102(CP000095|pid:none) Prochlorococcus marinus str. NAT... 77 3e-12
AJ543643_1(AJ543643|pid:none) Desulfitobacterium hafniense SMC g... 77 3e-12
AK143996_1(AK143996|pid:none) Mus musculus adult male kidney cDN... 77 4e-12
AE014074_376(AE014074|pid:none) Streptococcus pyogenes MGAS315, ... 77 4e-12
FM204884_591(FM204884|pid:none) Streptococcus equi subsp. zooepi... 76 5e-12
CP001620_1139(CP001620|pid:none) Corynebacterium kroppenstedtii ... 76 5e-12
CP000423_1514(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 76 5e-12
(P32908) RecName: Full=Structural maintenance of chromosomes pro... 76 5e-12
AE008384_1031(AE008384|pid:none) Methanosarcina mazei strain Goe... 76 6e-12
JQ0894(JQ0894)P115 protein - Mycoplasma hyorhinis 76 6e-12
CP000419_1059(CP000419|pid:none) Streptococcus thermophilus LMD-... 76 6e-12
FM204883_1487(FM204883|pid:none) Streptococcus equi subsp. equi ... 76 6e-12
CP000411_406(CP000411|pid:none) Oenococcus oeni PSU-1, complete ... 76 6e-12
CP000414_1484(CP000414|pid:none) Leuconostoc mesenteroides subsp... 75 8e-12
CP000142_2515(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 75 8e-12
(Q54LV0) RecName: Full=Structural maintenance of chromosomes pro... 75 8e-12
CP000921_908(CP000921|pid:none) Streptococcus pneumoniae Taiwan1... 75 1e-11
CP000407_1182(CP000407|pid:none) Streptococcus suis 05ZYH33, com... 75 1e-11
AM946015_545(AM946015|pid:none) Streptococcus uberis 0140J compl... 75 1e-11
CU633900_559(CU633900|pid:none) Podospora anserina genomic DNA c... 75 1e-11
CP001287_1414(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 75 1e-11
CP000023_1196(CP000023|pid:none) Streptococcus thermophilus LMG ... 75 1e-11
CR932234_1(CR932234|pid:none) Structural maintenance of chromoso... 75 1e-11
CP000968_243(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 75 1e-11
CP000562_1822(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 75 1e-11
AE017226_1485(AE017226|pid:none) Treponema denticola ATCC 35405,... 75 1e-11
CP000024_1219(CP000024|pid:none) Streptococcus thermophilus CNRZ... 74 2e-11
DQ489736_1287(DQ489736|pid:none) Leuconostoc citreum KM20, compl... 74 2e-11
BA000011_821(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 74 2e-11
CR382124_304(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 74 2e-11
CR954206_143(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 74 2e-11
AE017308_411(AE017308|pid:none) Mycoplasma mobile 163K complete ... 74 2e-11
CP000413_755(CP000413|pid:none) Lactobacillus gasseri ATCC 33323... 74 2e-11
CP000673_1353(CP000673|pid:none) Clostridium kluyveri DSM 555, c... 74 2e-11
CP000875_2626(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 74 3e-11
CP000825_70(CP000825|pid:none) Prochlorococcus marinus str. MIT ... 74 3e-11
CP001047_521(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 74 3e-11
CP000725_761(CP000725|pid:none) Streptococcus gordonii str. Chal... 74 3e-11
BX548174_61(BX548174|pid:none) Prochlorococcus marinus MED4 comp... 73 4e-11
CP000481_1566(CP000481|pid:none) Acidothermus cellulolyticus 11B... 73 4e-11
D30788_1(D30788|pid:none) Schizosaccharomyces pombe gene for cut... 73 5e-11
CU179680_439(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 73 5e-11
AE015927_1098(AE015927|pid:none) Clostridium tetani E88, complet... 73 5e-11
(P41004) RecName: Full=Structural maintenance of chromosomes pro... 73 5e-11
(Q9Z1M9) RecName: Full=Structural maintenance of chromosomes pro... 72 7e-11
(Q14683) RecName: Full=Structural maintenance of chromosomes pro... 72 7e-11
CP000909_2864(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 72 7e-11
(O97593) RecName: Full=Structural maintenance of chromosomes pro... 72 7e-11
I54383(I54383) chromosome segregation protein smc1 [similarity] ... 72 7e-11
AL672180_7(AL672180|pid:none) Mouse DNA sequence from clone RP23... 72 7e-11
AE017245_670(AE017245|pid:none) Mycoplasma synoviae 53, complete... 72 7e-11
AK226305_1(AK226305|pid:none) Arabidopsis thaliana mRNA for puta... 72 7e-11
AP008231_2048(AP008231|pid:none) Synechococcus elongatus PCC 630... 72 9e-11
CP000100_2043(CP000100|pid:none) Synechococcus elongatus PCC 794... 72 9e-11
AE017198_1308(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 72 9e-11
CP000698_1082(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 72 9e-11
CP001055_401(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 72 9e-11
AF026198_3(AF026198|pid:none) Fugu rubripes neural cell adhesion... 72 9e-11
AP009484_820(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 72 9e-11
CP000300_1382(CP000300|pid:none) Methanococcoides burtonii DSM 6... 72 1e-10
AM270032_9(AM270032|pid:none) Aspergillus niger contig An02c0380... 72 1e-10
CP000099_578(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 72 1e-10
AP008937_1237(AP008937|pid:none) Lactobacillus fermentum IFO 395... 72 1e-10
CP000513_579(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 72 1e-10
CP001390_3560(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 72 1e-10
AM180355_1291(AM180355|pid:none) Clostridium difficile 630 compl... 71 2e-10
CP000850_1153(CP000850|pid:none) Salinispora arenicola CNS-205, ... 71 2e-10
CP000108_413(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 71 2e-10
AJ534335_1(AJ534335|pid:none) Gallus gallus mRNA for SMC1 protein. 71 2e-10
CP000088_653(CP000088|pid:none) Thermobifida fusca YX, complete ... 71 2e-10
CP000469_1556(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 71 2e-10
AE014134_2849(AE014134|pid:none) Drosophila melanogaster chromos... 71 2e-10
CP000679_1546(CP000679|pid:none) Caldicellulosiruptor saccharoly... 71 2e-10
AY051730_1(AY051730|pid:none) Drosophila melanogaster LD25919 fu... 71 2e-10
AL935256_224(AL935256|pid:none) Lactobacillus plantarum strain W... 70 3e-10
CP000910_1748(CP000910|pid:none) Renibacterium salmoninarum ATCC... 70 3e-10
CP000563_2611(CP000563|pid:none) Shewanella baltica OS155, compl... 70 3e-10
CP000753_2643(CP000753|pid:none) Shewanella baltica OS185, compl... 70 3e-10
CP000891_2745(CP000891|pid:none) Shewanella baltica OS195, compl... 70 3e-10
CU458896_3219(CU458896|pid:none) Mycobacterium abscessus chromos... 70 3e-10
CP000446_1502(CP000446|pid:none) Shewanella sp. MR-4, complete g... 70 3e-10
CP000084_113(CP000084|pid:none) Candidatus Pelagibacter ubique H... 70 3e-10
CP000667_1276(CP000667|pid:none) Salinispora tropica CNB-440, co... 70 3e-10
CP001252_1664(CP001252|pid:none) Shewanella baltica OS223, compl... 70 3e-10
CP000498_595(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 70 4e-10
CP000583_374(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 70 4e-10
CP000444_1565(CP000444|pid:none) Shewanella sp. MR-7, complete g... 70 5e-10
AE017282_2314(AE017282|pid:none) Methylococcus capsulatus str. B... 70 5e-10
AJ543648_1(AJ543648|pid:none) Methylococcus capsulatus smc gene. 70 5e-10
AY648730_1(AY648730|pid:none) Danio rerio chromosome adhesion pr... 70 5e-10
CP000284_1398(CP000284|pid:none) Methylobacillus flagellatus KT,... 70 5e-10
CP000148_1162(CP000148|pid:none) Geobacter metallireducens GS-15... 69 6e-10
CP000412_1114(CP000412|pid:none) Lactobacillus delbrueckii subsp... 69 6e-10
AM920435_699(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 69 8e-10
AM711867_1379(AM711867|pid:none) Clavibacter michiganensis subsp... 69 8e-10
CP000462_1186(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 69 8e-10
CR543861_759(CR543861|pid:none) Acinetobacter sp. ADP1 complete ... 69 8e-10
CP000159_866(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 69 8e-10
CP000435_2410(CP000435|pid:none) Synechococcus sp. CC9311, compl... 69 1e-09
AP007151_1246(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 69 1e-09
AM746676_1746(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 69 1e-09
CP001172_2763(CP001172|pid:none) Acinetobacter baumannii AB307-0... 69 1e-09
CP000863_756(CP000863|pid:none) Acinetobacter baumannii ACICU, c... 69 1e-09
BA000026_483(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 69 1e-09
CP000890_571(CP000890|pid:none) Coxiella burnetii RSA 331, compl... 69 1e-09
CP000033_1216(CP000033|pid:none) Lactobacillus acidophilus NCFM,... 69 1e-09
CP000521_830(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 69 1e-09
AL096860_21(AL096860|pid:none) Arabidopsis thaliana DNA chromoso... 68 1e-09
AM849034_743(AM849034|pid:none) Clavibacter michiganensis subsp.... 68 1e-09
(O93308) RecName: Full=Structural maintenance of chromosomes pro... 68 1e-09
AL445065_133(AL445065|pid:none) Thermoplasma acidophilum complet... 68 1e-09
BC046691_1(BC046691|pid:none) Xenopus laevis SMC-like 1 (yeast),... 68 1e-09
CP000586_124(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 68 1e-09
AF160943_1(AF160943|pid:none) Drosophila melanogaster LD20207 fu... 68 2e-09
CR954203_372(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 68 2e-09
CP001068_1247(CP001068|pid:none) Ralstonia pickettii 12J chromos... 68 2e-09
AE017244_677(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c... 68 2e-09
AE017332_671(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co... 68 2e-09
CR954253_1334(CR954253|pid:none) Lactobacillus delbrueckii subsp... 68 2e-09
AE016822_1198(AE016822|pid:none) Leifsonia xyli subsp. xyli str.... 68 2e-09
CR382131_640(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 68 2e-09
CT978603_337(CT978603|pid:none) Synechococcus sp. RCC307 genomic... 67 2e-09
AM902716_1712(AM902716|pid:none) Bordetella petrii strain DSM 12... 67 2e-09
CP000884_3577(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 67 2e-09
CP001131_704(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 67 3e-09
AM167904_1066(AM167904|pid:none) Bordetella avium 197N complete ... 67 3e-09
CP000961_2823(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 67 3e-09
FN392320_892(FN392320|pid:none) Pichia pastoris GS115 chromosome... 67 3e-09
CP001393_1103(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 67 3e-09
AE014299_2827(AE014299|pid:none) Shewanella oneidensis MR-1, com... 67 3e-09
CP000931_2557(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 67 3e-09
CP001275_1687(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 67 3e-09
AJ535203_1(AJ535203|pid:none) Anopheles gambiae mRNA for SMC1 pr... 67 3e-09
CU928165_102(CU928165|pid:none) Kluyveromyces thermotolerans str... 67 3e-09
CP000733_1382(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 67 4e-09
CR382126_820(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 67 4e-09
CP000821_1734(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 67 4e-09
CP000511_2139(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 67 4e-09
CP000509_3225(CP000509|pid:none) Nocardioides sp. JS614, complet... 67 4e-09
CP000089_1720(CP000089|pid:none) Dechloromonas aromatica RCB, co... 67 4e-09
AY548884_1(AY548884|pid:none) Antonospora locustae chromosome se... 67 4e-09
CP000097_421(CP000097|pid:none) Synechococcus sp. CC9902, comple... 66 5e-09
CR382129_710(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 66 5e-09
AJ543650_1(AJ543650|pid:none) Rhodobacter sphaeroides smc gene. ... 66 5e-09
CP000480_2340(CP000480|pid:none) Mycobacterium smegmatis str. MC... 66 5e-09
CP000577_2518(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 66 5e-09
AJ543642_1(AJ543642|pid:none) Cytophaga hutchinsonii smc gene. ... 66 5e-09
BX842649_44(BX842649|pid:none) Bdellovibrio bacteriovorus comple... 66 5e-09
AJ535206_1(AJ535206|pid:none) Anopheles gambiae mRNA for SMC4 pr... 66 5e-09
AL590447_68(AL590447|pid:none) chromosome VII of strain GB-M1 of... 66 7e-09
CP001099_478(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 66 7e-09
CP001281_2129(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 66 7e-09
CP000251_672(CP000251|pid:none) Anaeromyxobacter dehalogenans 2C... 66 7e-09
CP000502_245(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 65 8e-09
FM992695_330(FM992695|pid:none) Candida dubliniensis CD36 chromo... 65 8e-09
CU928178_155(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 65 8e-09
CP000661_143(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 65 8e-09
CP001107_1444(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 65 1e-08
AE002114_13(AE002114|pid:none) Ureaplasma parvum serovar 3 str. ... 65 1e-08
AE017180_1122(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 65 1e-08
CP001196_2941(CP001196|pid:none) Oligotropha carboxidovorans OM5... 65 1e-08
AB077475_1(AB077475|pid:none) Rattus norvegicus mRNA for barmoti... 65 1e-08
CP000479_3646(CP000479|pid:none) Mycobacterium avium 104, comple... 65 1e-08
AP007281_1091(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 65 1e-08
AE016958_2990(AE016958|pid:none) Mycobacterium avium subsp. para... 65 1e-08
CP000031_3158(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 64 2e-08
BX640433_133(BX640433|pid:none) Bordetella parapertussis strain ... 64 2e-08
AJ488495_1(AJ488495|pid:none) Oryza sativa mRNA for SMC4 protein. 64 2e-08
AM408590_2948(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 64 2e-08
CP000717_2928(CP000717|pid:none) Mycobacterium tuberculosis F11,... 64 2e-08
AP008971_846(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 64 2e-08
CP001280_3721(CP001280|pid:none) Methylocella silvestris BL2, co... 64 2e-08
(O94383) RecName: Full=Structural maintenance of chromosomes pro... 64 2e-08
CP000769_712(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 64 2e-08
(Q9FJL0) RecName: Full=Structural maintenance of chromosomes pro... 64 2e-08
CU928175_63(CU928175|pid:none) Zygosaccharomyces rouxii strain C... 64 2e-08
CU928171_576(CU928171|pid:none) Kluyveromyces thermotolerans str... 64 2e-08
AF225909_1(AF225909|pid:none) Drosophila melanogaster cohesin su... 64 2e-08
FN357846_1(FN357846|pid:none) Schistosoma mansoni genome sequenc... 64 2e-08
AE014297_3597(AE014297|pid:none) Drosophila melanogaster chromos... 64 2e-08
CP000463_4406(CP000463|pid:none) Rhodopseudomonas palustris BisA... 64 2e-08
BX640922_1(BX640922|pid:none) Homo sapiens mRNA; cDNA DKFZp686L1... 64 3e-08
AK291921_1(AK291921|pid:none) Homo sapiens cDNA FLJ77162 partial... 64 3e-08
BC003279_1(BC003279|pid:none) Mus musculus structural maintenanc... 64 3e-08
BC064368_1(BC064368|pid:none) Homo sapiens structural maintenanc... 64 3e-08
CR382138_863(CR382138|pid:none) Debaryomyces hansenii strain CBS... 64 3e-08
AY099521_1(AY099521|pid:none) Danio rerio structural maintenance... 64 3e-08
CP000605_219(CP000605|pid:none) Bifidobacterium longum DJO10A, c... 64 3e-08
CP001095_855(CP001095|pid:none) Bifidobacterium longum subsp. in... 64 3e-08
AE014295_190(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 64 3e-08
BX571965_2185(BX571965|pid:none) Burkholderia pseudomallei strai... 64 3e-08
(Q9CBT5) RecName: Full=Chromosome partition protein smc; &AL583... 64 3e-08
CP000081_347(CP000081|pid:none) Leishmania major chromosome 35, ... 63 4e-08
CP000872_479(CP000872|pid:none) Brucella canis ATCC 23365 chromo... 63 4e-08
CP000548_1305(CP000548|pid:none) Burkholderia mallei NCTC 10247 ... 63 4e-08
AE016820_457(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 63 4e-08
CP000572_2476(CP000572|pid:none) Burkholderia pseudomallei 1106a... 63 4e-08
AP008957_2437(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 63 4e-08
CP001488_487(CP001488|pid:none) Brucella melitensis ATCC 23457 c... 63 4e-08
AE014291_482(AE014291|pid:none) Brucella suis 1330 chromosome I,... 63 4e-08
AE008917_1438(AE008917|pid:none) Brucella melitensis 16M chromos... 63 4e-08
CP000010_1342(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 63 4e-08
CP000013_44(CP000013|pid:none) Borrelia garinii PBi, complete ge... 63 4e-08
CP000250_1064(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 63 4e-08
CP000607_1444(CP000607|pid:none) Chlorobium phaeovibrioides DSM ... 63 4e-08
CP000570_2423(CP000570|pid:none) Burkholderia pseudomallei 668 c... 63 4e-08
CP000124_2561(CP000124|pid:none) Burkholderia pseudomallei 1710b... 63 4e-08
CT971583_2124(CT971583|pid:none) Synechococcus WH7803 complete g... 63 5e-08
AE002098_521(AE002098|pid:none) Neisseria meningitidis MC58, com... 63 6e-08
CP000360_2634(CP000360|pid:none) Acidobacteria bacterium Ellin34... 63 6e-08
CP000270_2743(CP000270|pid:none) Burkholderia xenovorans LB400 c... 63 6e-08
AM236080_1094(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 63 6e-08
CP001074_1077(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 63 6e-08
CP001101_472(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 63 6e-08
AE017263_233(AE017263|pid:none) Mesoplasma florum L1 complete ge... 62 7e-08
CP000133_984(CP000133|pid:none) Rhizobium etli CFN 42, complete ... 62 7e-08
AP007255_3981(AP007255|pid:none) Magnetospirillum magneticum AMB... 62 7e-08
CP000473_4372(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 62 7e-08
CP000628_967(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 62 7e-08
CP001089_3458(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 62 7e-08
CP000325_1690(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 62 9e-08
AY915495_1(AY915495|pid:none) Schistosoma japonicum SJCHGC07135 ... 62 9e-08
AE015451_4222(AE015451|pid:none) Pseudomonas putida KT2440 compl... 62 9e-08
(Q12267) RecName: Full=Structural maintenance of chromosomes pro... 62 9e-08
CP000264_374(CP000264|pid:none) Jannaschia sp. CCS1, complete ge... 62 9e-08
CP001052_2406(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 62 9e-08
CP001191_650(CP001191|pid:none) Rhizobium leguminosarum bv. trif... 62 9e-08
CP001108_451(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 62 9e-08
AK301266_1(AK301266|pid:none) Homo sapiens cDNA FLJ50250 complet... 62 1e-07
AP007171_424(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 62 1e-07
AM260479_2010(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 62 1e-07
CP000494_2186(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 62 1e-07
BA000040_2496(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 62 1e-07
CP000115_2593(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 62 1e-07
AE017340_1691(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 62 1e-07
AY528744_1(AY528744|pid:none) Trypanosoma cruzi structural maint... 61 2e-07
CU234118_1885(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 61 2e-07
CP000267_2161(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 61 2e-07
CU633749_1650(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 61 2e-07
AM270136_8(AM270136|pid:none) Aspergillus niger contig An07c0190... 61 2e-07
AJ719507_1(AJ719507|pid:none) Gallus gallus mRNA for hypothetica... 61 2e-07
CR380958_523(CR380958|pid:none) Candida glabrata strain CBS138 c... 61 2e-07
CP000285_693(CP000285|pid:none) Chromohalobacter salexigens DSM ... 61 2e-07
CP000304_1821(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 61 2e-07
AF380672_1(AF380672|pid:none) Streptococcus agalactiae putative ... 61 2e-07
CT573326_1614(CT573326|pid:none) Pseudomonas entomophila str. L4... 61 2e-07
CP000090_1871(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 61 2e-07
CP000758_612(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 61 2e-07
CP000352_1423(CP000352|pid:none) Ralstonia metallidurans CH34, c... 61 2e-07
CP000362_1233(CP000362|pid:none) Roseobacter denitrificans OCh 1... 61 2e-07
CP000680_2728(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 60 3e-07
CP000949_3578(CP000949|pid:none) Pseudomonas putida W619, comple... 60 3e-07
CP000116_1228(CP000116|pid:none) Thiobacillus denitrificans ATCC... 60 3e-07
CP001025_1907(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 60 3e-07
U84782_1(U84782|pid:none) Arcanobacterium pyogenes chromosome se... 60 4e-07
CP001100_7(CP001100|pid:none) Chloroherpeton thalassium ATCC 351... 60 4e-07
AL954747_2286(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 60 4e-07
CP000512_2793(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 60 4e-07
CP000539_2006(CP000539|pid:none) Acidovorax sp. JS42, complete g... 60 4e-07
CP000377_2586(CP000377|pid:none) Silicibacter sp. TM1040, comple... 60 4e-07
CP000458_2023(CP000458|pid:none) Burkholderia cenocepacia HI2424... 60 4e-07
CP000380_563(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 60 4e-07
CP000958_2026(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 60 4e-07
BC071750_1(BC071750|pid:none) Homo sapiens structural maintenanc... 60 5e-07
CP000058_1699(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 60 5e-07
CP000438_3571(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 60 5e-07
CP000075_1816(CP000075|pid:none) Pseudomonas syringae pv. syring... 60 5e-07
CP001251_887(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 59 6e-07
AJ249992_1(AJ249992|pid:none) Mytilus galloprovincialis partial ... 59 6e-07
CP000555_1807(CP000555|pid:none) Methylibium petroleiphilum PM1,... 59 6e-07
CP000744_3764(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 59 6e-07
AE004969_1312(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, ... 59 6e-07
CP000820_1130(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 59 6e-07
CP001050_1703(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945... 59 6e-07
AM494971_344(AM494971|pid:none) Leishmania braziliensis chromoso... 59 8e-07
CP000633_815(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 59 8e-07
CP000249_3554(CP000249|pid:none) Frankia sp. CcI3, complete geno... 59 8e-07
AL591688_934(AL591688|pid:none) Sinorhizobium meliloti 1021 comp... 59 8e-07
CP001096_4909(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 59 8e-07
CP000514_1148(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 59 8e-07
AB179361_1(AB179361|pid:none) Macaca fascicularis testis cDNA cl... 59 1e-06
CP000697_395(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 59 1e-06
CP000158_1884(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 59 1e-06
AK128143_1(AK128143|pid:none) Homo sapiens cDNA FLJ46264 fis, cl... 59 1e-06
AE017342_264(AE017342|pid:none) Cryptococcus neoformans var. neo... 59 1e-06
AF092564_1(AF092564|pid:none) Homo sapiens chromosome-associated... 59 1e-06
AL136877_1(AL136877|pid:none) Homo sapiens mRNA; cDNA DKFZp434F2... 59 1e-06
(Q9NTJ3) RecName: Full=Structural maintenance of chromosomes pro... 59 1e-06
AK122939_1(AK122939|pid:none) Homo sapiens cDNA FLJ16648 fis, cl... 59 1e-06
CP000127_1613(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 59 1e-06
AL833949_1(AL833949|pid:none) Homo sapiens mRNA; cDNA DKFZp434N2... 59 1e-06
BC017845_1(BC017845|pid:none) Homo sapiens structural maintenanc... 58 1e-06
AK019977_1(AK019977|pid:none) Mus musculus 8 days embryo whole b... 58 1e-06
BC107891_1(BC107891|pid:none) Homo sapiens structural maintenanc... 58 1e-06
AL161791_2(AL161791|pid:none) Human DNA sequence from clone RP11... 58 1e-06

>AP006757_32(AP006757|pid:none) Oryza sativa Japonica Group genomic
DNA, chromosome 1, PAC clone:P0551C06.
&AP008207_3391(AP008207|pid:none)
Length = 1175

Score = 319 bits (818), Expect = 2e-85
Identities = 158/242 (65%), Positives = 187/242 (77%)
Frame = +1

Query: 1534 LEAAIKKHTWIKNEKQLFNRPGSDFDFNATDPSKANSEYIKLQEEQEKLSKTINRKVMSM 1713
++ ++K++WI EKQLF + G+D+DF + +P KA E LQ +Q L K +N+KVM+M
Sbjct: 929 VDKLVEKYSWIATEKQLFGKSGTDYDFVSCEPHKAREELENLQAQQSSLEKRVNKKVMAM 988

Query: 1714 FEKAEQEYQELMEKKKIIENDKSKIEHVIRELDEKKNESLRTTWKKVNKDFGSIFSTLLP 1893
FEKAE EY +LM KK IIENDKSKI+ VI ELDEKK E+L+ TW KVNKDFGSIFSTLLP
Sbjct: 989 FEKAEDEYNDLMSKKNIIENDKSKIKTVIEELDEKKKETLKVTWLKVNKDFGSIFSTLLP 1048

Query: 1894 GTSAKLEPPEGQNELFGLEVKVAFGDVWKETLSELSGGQKXXXXXXXXXXXXXFKPAPMY 2073
GT AKL+PPEG L GLEV+VAFG VWK++LSELSGGQ+ FKPAP+Y
Sbjct: 1049 GTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRSLLALSLILALLLFKPAPLY 1108

Query: 2074 ILDEIDAALDLSHTQNIGMMLKQHFTSSQFIVVSLKEGMFTNANVLFETKFIDGVSKVHR 2253
ILDE+DAALDLSHTQNIG M+K HF SQFIVVSLKEGMF NANV+F TKF+DGVS V R
Sbjct: 1109 ILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVIFRTKFVDGVSTVTR 1168

Query: 2254 TV 2259
TV
Sbjct: 1169 TV 1170

Score = 266 bits (681), Expect = 2e-69
Identities = 165/503 (32%), Positives = 263/503 (52%), Gaps = 5/503 (0%)
Frame = +3

Query: 6 TIEKKQKKVDEITKVLAEEITPTLDKLRGERTSYMKFTNNQTLIDRLQRFIIAYEYYTYX 185
T+EKKQ KVDEI K+L EEI P L+KLR ER YMK+ N +DRL+RF IAYE+
Sbjct: 184 TLEKKQNKVDEINKLLDEEILPALEKLRKERCQYMKWANGNADLDRLKRFCIAYEFVQAE 243

Query: 186 XXXXXXXXXXXXXX--IDKGQXXXXXXXXXXXXXXXXISELAKQREKETN--LEEMDQQE 353
I + IS LA ++E + ++ + ++
Sbjct: 244 RVRDGALNDVKQIRAKIVELDESTEKLKSEIQEMDKNISNLAAEKEAKLGGEMKTLSEKV 303

Query: 354 QKLSKELVKYQTSHKHQKESLDKEEGAINNLANTRXXXXXXXXXXXXXXXXXXXXXXXIV 533
KLS L+K + +Q+E++ EE + +
Sbjct: 304 DKLSHALIKETSVMNNQEETIKSEEKGAEKILKNIEDIKRSIIERDTAVKNAEDGAADMK 363

Query: 534 EENQQINAELKTLQNKHNTMTTGISTGADGSSAAEDGSYTEQLMEAKKTAVNAASEYKQA 713
+ + EL + ++ + G S+A E +QL +AK A S KQ
Sbjct: 364 KRADDLTKELDESEKEYQGVLAG------KSNANEKKCLEDQLRDAKAAVGEAESGLKQL 417

Query: 714 EFRVKHLQSELIAKRKAITQEQTDHKKLQAEQELVEREIQQLTRSIQELQLDNSKQQELT 893
++ H + EL K+ + ++ + + E + E++++ + S+Q + + Q E
Sbjct: 418 TTKISHSEKELKDKKAQLVSKRDEATAAENELKAREKDLETVKASMQSVNYEEG-QMEAL 476

Query: 894 EKKRQLE-PLVSKLREEVGNASAQLSGLEFNYTDPSKSFDRSKVKGIVANLITLKDVETA 1070
+K R +E V KL++++ S +L+ + FNY DP K+FDRSKVKG+VA LI +KD TA
Sbjct: 477 QKDRSIELDAVQKLKDKIRALSGELANVHFNYRDPVKNFDRSKVKGVVARLIKIKDSSTA 536

Query: 1071 TALEICASGKLYNIVIEDDETGKALLSKGQLKRRVTLLPLNKVEGRSIDPQKIKNAQKIA 1250
TALE+ A G+LYN+V++ + TGK LL G LKRRVT++PLNK++ +I + + A+++
Sbjct: 537 TALEVAAGGRLYNVVVDTETTGKQLLQNGDLKRRVTIIPLNKIQTGTIPERVRQAARRLV 596

Query: 1251 PNGAVKPAIEFVEYDKELQPAMNFVFGSTFIATDKKYAQKAAFDSSIKVRTISLEGDEYN 1430
V A+E V Y +E++ AM +VFGSTF+ + + A++ AF+ + +++LEGD +
Sbjct: 597 GAENVTLALELVGYVEEVKNAMTYVFGSTFVCRNMESAKEVAFNREVGSTSVTLEGDIFQ 656

Query: 1431 PAGSLTGGSRPPSGSILTQIQRL 1499
P+G LTGGSR G +L Q+ L
Sbjct: 657 PSGLLTGGSRRGGGDLLRQLHEL 679

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,299,417,891
Number of extensions: 61692952
Number of successful extensions: 236534
Number of sequences better than 10.0: 1903
Number of HSP's gapped: 230867
Number of HSP's successfully gapped: 2651
Length of query: 786
Length of database: 1,040,966,779
Length adjustment: 137
Effective length of query: 649
Effective length of database: 601,979,734
Effective search space: 390684847366
Effective search space used: 390684847366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.61 gvh: 0.28 alm: 0.30 top: 0.47 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: vesicles of secretory system
16.0 %: nuclear
12.0 %: endoplasmic reticulum
8.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U11149-1 is cyt

VS (DIR, S) 1
VH (FL, L) 2
VF (FL, S) 1
AH (FL, L) 4
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0