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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01735-1
Contig ID Contig-U01735-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01735-1 (Contig-U01735-1Q) /CSM_Contig/Contig-U01735-1Q.Seq.d
TAAATCACGCACATATTTAAAAGATTAATTAATTAAATCTCAATTCCTAT
ATTTATATATATATTATTACAAAAAATCAAATAACCACATATTATATACA
TATTAATATATACATAAAAACATATTTAACATATTCAAAAAAGAATAGTC
GACATATAGATTCAAAAGTACATTACCCACATTAAACAATACAAATTACA
AAAATATTCAAATTTAATTTCTTTGTTTTAGATTTCTGAAAACATATTTA
TTTATTCCATCACAAAAAAAAAAAAAAAAAAAATCAAAA
Gap no gap
Contig length 289
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4536111
End point 4536400
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01735
List of clone(s) 

est1=SSG106Z,1,290
Translated Amino Acid sequence 
nhahi*kin*LNLNSYIYIYIITKNQITTYYIHINIYIKTYLTYSKKNSRHIDSKVHYPH
*tiqitkifkfnffvldf*khiylfhhkkkkkknq
Translated Amino Acid sequence (All Frames) 
Frame A:
*ithifkrlin*isipifiyillqkik*phiiyiliyt*khi*hiqkrivdi*iqkyith
ikqyklqkysnlislf*isenifiysitkkkkkkik


Frame B:
ksrtylkd*liksqflylyiyyykksnnhilyty*yihknifnifkke*styrfkstlpt
lnntnykniqi*flcfrflktylfipsqkkkkkksk


Frame C:
nhahi*kin*LNLNSYIYIYIITKNQITTYYIHINIYIKTYLTYSKKNSRHIDSKVHYPH
*tiqitkifkfnffvldf*khiylfhhkkkkkknq
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01735-1 (Contig-U01735-1Q)
/CSM_Contig/Contig-U01735-1Q.Seq.d
         (289 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01735-1 (Contig-U01735-1Q) /CSM_Contig/Conti...   274  7e-74
Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Conti...    42  4e-04
Contig-U11668-1 (Contig-U11668-1Q) /CSM_Contig/Conti...    42  4e-04
Contig-U11724-1 (Contig-U11724-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U09451-1 (Contig-U09451-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U08909-1 (Contig-U08909-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti...    36  0.027
Contig-U12406-1 (Contig-U12406-1Q) /CSM_Contig/Conti...    36  0.027
Contig-U12253-1 (Contig-U12253-1Q) /CSM_Contig/Conti...    36  0.027
Contig-U11363-1 (Contig-U11363-1Q) /CSM_Contig/Conti...    36  0.027

>Contig-U01735-1 (Contig-U01735-1Q) /CSM_Contig/Contig-U01735-1Q.Seq.d
          Length = 289

 Score =  274 bits (138), Expect = 7e-74
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 126 ttaacatattcaaaaaagaatagtcgacatatagattcaaaagtacattacccacattaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttaacatattcaaaaaagaatagtcgacatatagattcaaaagtacattacccacattaa 185

                                                                       
Query: 186 acaatacaaattacaaaaatattcaaatttaatttctttgttttagatttctgaaaacat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acaatacaaattacaaaaatattcaaatttaatttctttgttttagatttctgaaaacat 245

                             
Query: 246 atttatttattccatcac 263
           ||||||||||||||||||
Sbjct: 246 atttatttattccatcac 263


 Score = 93.7 bits (47), Expect = 1e-19
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                         
Query: 1  taaatcacgcacatatttaaaagattaattaattaaatctcaattcc 47
          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  taaatcacgcacatatttaaaagattaattaattaaatctcaattcc 47


>Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Contig-U12693-1Q.Seq.d
          Length = 1460

 Score = 42.1 bits (21), Expect = 4e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 191 acaaattacaaaaatattcaaattt 215
           |||||||||||||| ||||||||||
Sbjct: 658 acaaattacaaaaaaattcaaattt 682


>Contig-U11668-1 (Contig-U11668-1Q) /CSM_Contig/Contig-U11668-1Q.Seq.d
          Length = 3844

 Score = 42.1 bits (21), Expect = 4e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 188  aatacaaattacaaaaatattcaaa 212
            ||||||||||| |||||||||||||
Sbjct: 2802 aatacaaattaaaaaaatattcaaa 2826


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9912
Number of Sequences: 8361
Number of extensions: 9912
Number of successful extensions: 1079
Number of sequences better than 10.0: 291
length of query: 289
length of database: 7,895,291
effective HSP length: 16
effective length of query: 273
effective length of database: 7,761,515
effective search space: 2118893595
effective search space used: 2118893595
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5. 5
Homology vs DNA 
Query= Contig-U01735-1 (Contig-U01735-1Q) /CSM_Contig/Contig-U01735-1Q.Seq.d
         (289 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90022) Dictyostelium discoideum slug cDNA, clone SSG106.        208   7e-71  2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   149   6e-50  2
(FG697208) G1144P328RG11.T0 Anolis carolinensis pooled norma...    44   9e-04  2
(AC201470) Strongylocentrotus purpuratus clone R3-3047L05, W...    52   0.011  1
(FI240593) CccaBb015-P24JR CccABb Cajanus cajan genomic clon...    44   0.014  2
(BX004865) Zebrafish DNA sequence from clone CH211-204E13.         38   0.078  4
(AL954181) Zebrafish DNA sequence from clone CH211-216B1.          38   0.078  4
(AC169468) Atelerix albiventris clone LB4-346I3, WORKING DRA...    36   0.11   2
(CU915285) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.12   2
(BX890629) Zebrafish DNA sequence from clone CH211-42G2.           38   0.15   5
(AC188159) Canis familiaris chromosome 21, clone XX-191P14, ...    48   0.18   1
(BH163276) ENTRY22TF Entamoeba histolytica Sheared DNA Entam...    48   0.18   1
(CR847929) Zebrafish DNA sequence from clone DKEY-70O1 in li...    44   0.24   3
(AC179620) Strongylocentrotus purpuratus clone R3-1028I02, W...    42   0.34   3
(AX344625) Sequence 50 from Patent WO0200927.                      34   0.38   3
(CU457396) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.50   4
(CZ726181) OC__Ba0053F18.f OC__Ba Oryza coarctata genomic cl...    34   0.51   2
(BX571962) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.57   5
(CE240158) tigr-gss-dog-17000333424263 Dog Library Canis lup...    42   0.58   2
(AM446526) Vitis vinifera contig VV78X124266.7, whole genome...    34   0.63   3
(CU694918) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.64   5
(DX399687) GH__Sa0029A05.b1 Gossypium herbaceum WGS library ...    42   0.67   2
(CR352258) Zebrafish DNA sequence from clone CH211-120G10 in...    36   0.68   3
(EA102739) Sequence 122 from patent US 7195870.                    40   0.70   2
(AX323654) Sequence 142 from Patent WO0192565.                     40   0.70   2
(AX277959) Sequence 122 from Patent WO0177375.                     40   0.70   2
(GM996002) Sequence 142 from Patent EP2014776.                     40   0.70   2
(AC185957) Teramnus labialis clone tl1-57l12, WORKING DRAFT ...    46   0.71   1
(AC167345) Bos taurus clone CH240-193O18, WORKING DRAFT SEQU...    46   0.71   1
(CU050742) Equus caballus GSS, BAC clone CH241-151E8, SP6 en...    46   0.71   1
(CO880914) BovGen_09239 normal cattle brain Bos taurus cDNA ...    46   0.71   1
(BG861020) 1024075B10.x1 C. reinhardtii CC-1690, normalized,...    46   0.71   1
(EV820467) BGBV-aaf11h07.b1 Snail_EST_pSMART Biomphalaria gl...    46   0.71   1
(ES751447) BGBV-aad30b05.b1 Snail_EST_pSMART Biomphalaria gl...    46   0.71   1
(AC173925) Atelerix albiventris clone LB4-318H1, WORKING DRA...    42   0.95   4
(AC205764) Spermophilus tridecemlineatus clone VMRC20-246J14...    42   1.2    2
(AC116748) Mus musculus chromosome 9, clone RP23-80L8, compl...    38   1.4    3
(AC225481) Medicago truncatula clone mth2-24d11, WORKING DRA...    42   1.5    4
(CU914548) Zebrafish DNA sequence from clone CH1073-218F7 in...    42   1.6    2
(DB767320) Apis mellifera head cDNA, RIKEN full-length enric...    28   1.7    3
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   1.8    4
(AC013439) Homo sapiens BAC clone RP11-270G18 from 2, comple...    42   2.1    3
(BX927308) Zebrafish DNA sequence from clone DKEY-16M19 in l...    38   2.1    2
(AL840631) Zebrafish DNA sequence from clone DKEY-210J14.          38   2.2    3
(CX576169) TTE00018494 Amplicon Express - Conjugative Form T...    38   2.3    2
(FH065259) CHO_OF3606xc03f1.ab1 CHO_OF3 Nicotiana tabacum ge...    34   2.3    2
(AG505786) Mus musculus molossinus DNA, clone:MSMg01-407P06....    40   2.3    2
(DY684274) TTEAU36THB Tetrahymena thermophila EST library, c...    38   2.3    2
(DY684103) TTEAS48THB Tetrahymena thermophila EST library, c...    38   2.4    2
(CT010457) Mouse DNA sequence from clone RP23-96M8 on chromo...    38   2.5    2
(AC120522) Canis lupus familiaris clone RP81-417N7, WORKING ...    36   2.6    5
(CX586917) TTE00018326 Amplicon Express - Conjugative Form T...    38   2.6    2
(EJ500501) 1095403625721 Global-Ocean-Sampling_GS-28-01-01-1...    38   2.7    2
(AC127296) Mus musculus BAC clone RP23-395A17 from chromosom...    42   2.7    5
(AC101988) Mus musculus clone RP24-363D14, WORKING DRAFT SEQ...    36   2.7    3
(BX936377) Zebrafish DNA sequence from clone DKEY-149J2 in l...    44   2.8    1
(AF133300) Mus musculus MOR 3'Beta1, MOR 3'Beta2, MOR 3'Beta...    44   2.8    1
(AC125353) Mus musculus BAC clone RP23-455B17 from 6, comple...    44   2.8    1
(AC122910) Mus musculus BAC clone RP23-54P3 from chromosome ...    44   2.8    1
(BS000030) Pan troglodytes chromosome 22 clone:PTB-025P20, m...    44   2.8    1
(Z21705) Antithamnion sp. Chloroplast gltB and psaC genes en...    44   2.8    1
(AM458671) Vitis vinifera, whole genome shotgun sequence, co...    44   2.8    1
(BD421120) Newly found genes, derived from Ciona intestinali...    44   2.8    1
(AK116916) Ciona intestinalis cDNA, clone:citb015d09, full i...    44   2.8    1
(AC155793) Felis catus clone RP86-276E5, WORKING DRAFT SEQUE...    44   2.8    1
(AC137920) Felis catus clone RP86-518O16, WORKING DRAFT SEQU...    44   2.8    1
(CR925712) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   2.8    1
(AC174426) Felis catus clone RP86-265K10, WORKING DRAFT SEQU...    44   2.8    1
(AQ989289) Gm_ISb001_018_B09R ISU Soybean BAC Library (pBelo...    44   2.8    1
(FI251731) CccaBb028-F20JR CccABb Cajanus cajan genomic clon...    44   2.8    1
(FI235251) CccaBb024-K20JF CccABb Cajanus cajan genomic clon...    44   2.8    1
(ER340152) 1092344338718 Global-Ocean-Sampling_GS-34-01-01-1...    44   2.8    1
(ED622203) GM_WBa0018B09.r GM_WBa Glycine max genomic clone ...    44   2.8    1
(AL186318) Tetraodon nigroviridis genome survey sequence T7 ...    44   2.8    1
(DE352654) Bombyx mori genomic DNA, BAC clone:BET_071_A06.         44   2.8    1
(CT943419) Equus caballus GSS, BAC clone CH241-23K24, SP6 en...    44   2.8    1
(CT506269) A BAC library has been constructed from cultivar ...    44   2.8    1
(CR173450) Forward strand read from insert in 3'HPRT inserti...    44   2.8    1
(CR061333) Forward strand read from insert in 3'HPRT inserti...    44   2.8    1
(BZ869093) CH240_211I16.TV CHORI-240 Bos taurus genomic clon...    44   2.8    1
(CN773725) taf08c07.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   2.8    1
(CN768656) taf69f11.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   2.8    1
(CN768311) taf69f11.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   2.8    1
(CN634373) taf08c07.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   2.8    1
(CK336159) C0132D11-3 NIA Mouse E7.5 Extraembryonic Portion ...    44   2.8    1
(BW334070) Ciona intestinalis cDNA, clone:cidg847a14, 5'end,...    44   2.8    1
(BW247430) Ciona intestinalis cDNA, clone:citb074m08, 5' end...    44   2.8    1
(BW237417) Ciona intestinalis cDNA, clone:citb056k23, 5' end...    44   2.8    1
(BP523183) Hydra magnipapillata cDNA, clone:hmp_21302.             44   2.8    1
(FK223380) XABT225634.b1 Gateway compatible cien cDNA librar...    44   2.8    1
(FG697160) G1144P328FG11.T0 Anolis carolinensis pooled norma...    44   2.8    1
(FG351698) TpNBL004438 Trichinella pseudospiralis new born l...    44   2.8    1
(FF896279) CBWU30558.b1 Yutaka Satou unpublished cDNA librar...    44   2.8    1
(FF747106) XABT56815.fwd Gateway compatible cien cDNA librar...    44   2.8    1
(FF710145) XABT30501.fwd Gateway compatible cien cDNA librar...    44   2.8    1
(FF693977) XABT105532.fwd Gateway compatible cien cDNA libra...    44   2.8    1
(FF686982) XABT100966.fwd Gateway compatible cien cDNA libra...    44   2.8    1
(FF622398) G825P5249FA4.T0 Acorn worm normalized gastrula pE...    44   2.8    1
(FE719818) SB03070A2F02.f1 Normalized subtracted Keck-Tagu L...    44   2.8    1
(EV820281) BGBV-aae81h08.g1 Snail_EST_pSMART Biomphalaria gl...    44   2.8    1
(EV818702) BGBV-aae52a08.g1 Snail_EST_pSMART Biomphalaria gl...    44   2.8    1
(EV815771) BGBV-aaf03a02.g1 Snail_EST_pSMART Biomphalaria gl...    44   2.8    1
(ES832934) UFL_371_77 Cotton fiber 0-10 day post anthesis Go...    44   2.8    1
(ES488951) BGBV-aac91g12.g1 Snail_EST_pSMART Biomphalaria gl...    44   2.8    1
(AV979926) Ciona intestinalis cDNA, clone:cieg55b14, 5' end,...    44   2.8    1
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    44   2.8    1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   2.8    4
(CQ787475) Sequence 325 from Patent WO2004020662.                  40   3.0    2
(CQ787459) Sequence 309 from Patent WO2004020662.                  40   3.0    2
(AC209044) Populus trichocarpa clone POP057-J01, complete se...    38   3.0    5
(AC103201) Rattus norvegicus clone CH230-35C4, WORKING DRAFT...    36   3.7    3
(ET960116) CHO_OF055xk17r1.ab1 CHO_OF Nicotiana tabacum geno...    36   3.8    2
(AC092779) Oryza sativa chromosome 3 BAC OSJNBb0024N19 genom...    40   4.2    3
(AC145579) Mus musculus BAC clone RP24-371G22 from Y, comple...    36   4.4    4
(BX255276) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    32   4.5    2
(AM269894) Eimeria tenella chromosome 1, ordered contigs.          32   4.6    2
(CU062496) M.truncatula DNA sequence from clone MTH2-80K13 o...    42   4.9    2
(CS374651) Sequence 754 from Patent WO2006034879.                  30   5.0    4
(AC163262) Rhinolophus ferrumequinum clone VMRC7-144M20, WOR...    38   5.1    2
(EU643479) Adineta vaga clone Av_TEL_L_A putative lipoprotei...    34   5.1    4
(CT485603) RP43-005L22, complete sequence.                         32   5.2    2
(AC193232) Pan troglodytes BAC clone CH251-512B9 from chromo...    32   5.2    2
(AL606467) Human DNA sequence from clone RP13-172P16 on chro...    32   5.3    2
(AC178612) Strongylocentrotus purpuratus clone R3-3021C9, WO...    32   5.3    2
(AC233304) Homo sapiens BAC clone RP11-1144K3 from chromosom...    32   5.4    2
(BX000444) Zebrafish DNA sequence from clone RP71-31C2 in li...    30   5.4    2
(ET942594) CHO_OF057xk17r2.ab1 CHO_OF Nicotiana tabacum geno...    36   5.5    2
(EJ135964) 1092343602422 Global-Ocean-Sampling_GS-27-01-01-1...    38   5.6    2
(CU468456) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.6    4
(AC147533) Macropus eugenii clone ME_KBa-311C4, complete seq...    40   5.7    2
(CU929182) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    30   5.8    2
(EF506945) Leptosira terrestris UTEX 333 chloroplast, comple...    38   5.8    4
(EX001470) BGBV-aae40e11.g1 Snail_EST_pSMART Biomphalaria gl...    38   5.9    2
(AP009283) Solanum lycopersicum genomic DNA, chromosome 8, c...    42   6.0    2
(DC204420) Plasmodium berghei strain ANKA cDNA clone:MG00380...    38   6.0    2
(DC234873) Plasmodium berghei strain ANKA cDNA clone:SG03156...    38   6.4    2
(CR812480) Zebrafish DNA sequence from clone DKEY-245M7 in l...    38   6.5    3
(AC153260) Bos taurus clone CH240-20D18, WORKING DRAFT SEQUE...    34   6.5    4
(AC145042) Macropus eugenii clone ME_KBa-289E24, complete se...    38   6.8    3
(AC150620) Callithrix jacchus clone CH259-508O1, WORKING DRA...    42   6.8    2
(CT971579) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   6.8    2
(DX553263) GH_MBb0034D16f GH_MBb Gossypium hirsutum genomic ...    32   6.9    2
(AL772209) Zebrafish DNA sequence from clone DKEY-49F1 in li...    34   6.9    6
(ER503949) 1093015414348 Global-Ocean-Sampling_GS-35-01-01-1...    32   7.0    2
(EJ618491) 1092963040258 Global-Ocean-Sampling_GS-29-01-01-1...    32   7.1    2
(ED401725) AUAC-aaz18e10.g1 Ascaris suum whole genome shotgu...    30   7.1    2
(BH931592) odh71b05.b1 B.oleracea002 Brassica oleracea genom...    30   7.1    2
(BH932250) odj22a03.g1 B.oleracea002 Brassica oleracea genom...    30   7.1    2
(DU519527) 1098609832917 CHORI-243 Ovis aries genomic clone ...    30   7.1    2
(DC226408) Plasmodium berghei strain ANKA cDNA clone:SG00568...    38   7.3    2
(AC154547) Mus musculus BAC clone RP23-433L1 from chromosome...    36   7.5    2
(FF633717) G825P561RB10.T0 Acorn worm normalized gastrula pE...    32   7.5    2
(EB501024) 1099435305444 12-DrosW-norm-1P5Kb Drosophila will...    34   7.6    2
(ET942474) CHO_OF057xk17f1.ab1 CHO_OF Nicotiana tabacum geno...    36   7.6    2
(Z98853) Caenorhabditis elegans Cosmid R08A2.                      36   7.7    3
(EX631237) 255508761 Pea aphid whole body normalized full le...    36   7.9    2
(AC201540) Strongylocentrotus purpuratus clone R3-3099E6, WO...    32   8.0    5
(EX612829) 255382356 Pea aphid whole body normalized full le...    36   8.4    2
(EJ742345) 1092962028012 Global-Ocean-Sampling_GS-30-02-01-1...    38   8.5    2
(FF303781) 279355423 Pea aphid whole body normalized full le...    36   8.5    2
(EX645351) 256681375 Pea aphid whole body normalized full le...    36   8.5    2
(EX606672) 255357352 Pea aphid whole body normalized full le...    36   8.5    2
(EX638763) 256625744 Pea aphid whole body normalized full le...    36   8.5    2
(EX649893) 256730838 Pea aphid whole body normalized full le...    36   8.6    2
(FF313529) 279390459 Pea aphid whole body normalized full le...    36   8.6    2
(FF292463) 279286131 Pea aphid whole body normalized full le...    36   8.7    2
(EK395092) 1095469517828 Global-Ocean-Sampling_GS-31-01-01-1...    38   8.7    2
(AC179760) Strongylocentrotus purpuratus clone R3-1016O24, W...    42   8.7    3
(FF335611) 280460066 Pea aphid whole body normalized full le...    36   8.8    2
(FF295160) 279306194 Pea aphid whole body normalized full le...    36   8.8    2
(EJ775633) 1092995200957 Global-Ocean-Sampling_GS-30-02-01-1...    38   8.8    2
(FF330585) 280443418 Pea aphid whole body normalized full le...    36   9.1    2
(BX936453) Zebrafish DNA sequence from clone CH211-245B3 in ...    36   9.2    3
(AM448698) Vitis vinifera contig VV78X061591.7, whole genome...    40   9.5    2
(EI410276) C01_hs2-60049025_PPyg_050413.f Pongo pygmaeus NG1...    36   9.6    2
(BX470168) Zebrafish DNA sequence from clone CH211-288L20 in...    36   9.7    4
(AC176071) Strongylocentrotus purpuratus clone R3-1G01, WORK...    40   9.9    3

>(C90022) Dictyostelium discoideum slug cDNA, clone SSG106.
          Length = 290

 Score =  208 bits (105), Expect(2) = 7e-71
 Identities = 105/105 (100%)
 Strand = Plus / Plus


Query: 159 gattcaaaagtacattacccacattaaacaatacaaattacaaaaatattcaaatttaat 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gattcaaaagtacattacccacattaaacaatacaaattacaaaaatattcaaatttaat 218


Query: 219 ttctttgttttagatttctgaaaacatatttatttattccatcac 263
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttctttgttttagatttctgaaaacatatttatttattccatcac 263

 Score = 93.7 bits (47), Expect(2) = 7e-71
 Identities = 47/47 (100%)
 Strand = Plus / Plus


Query: 1  taaatcacgcacatatttaaaagattaattaattaaatctcaattcc 47
          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  taaatcacgcacatatttaaaagattaattaattaaatctcaattcc 47

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 287,961,570
Number of extensions: 26379455
Number of successful extensions: 3013328
Number of sequences better than 10.0: 178
Length of query: 289
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 266
Effective length of database: 99,442,330,388
Effective search space: 26451659883208
Effective search space used: 26451659883208
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01735-1 (Contig-U01735-1Q) /CSM_Contig/Contig-U01735-1Q.Seq.d
         (289 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ158856_56(DQ158856|pid:none) Bigelowiella natans nucleomorph c...    35   1.1
CP001279_143(CP001279|pid:none) Nautilia profundicola AmH, compl...    34   1.4
(Q8MA04) RecName: Full=Maturase K; AltName: Full=Intron maturase...    32   5.3

>DQ158856_56(DQ158856|pid:none) Bigelowiella natans nucleomorph
            chromosome 1, complete sequence.
          Length = 1359

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +2

Query: 80   NNHILYTY*YIHKNIFNIFKKE*STYRFKSTLPTLNNTNYKNIQI*FLCFRFL 238
            N +  +T   +H+N+FN + K  ++Y+F S+   LNN N+ N     + + FL
Sbjct: 954  NFYQTFTLSKLHQNLFNFYFKS-NSYKFYSSSKKLNNLNFFNFYFMLMIYNFL 1005

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 336,992,298
Number of extensions: 5569224
Number of successful extensions: 8149
Number of sequences better than 10.0: 3
Number of HSP's gapped: 8120
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 1,051,180,864
Length adjustment: 65
Effective length of query: 31
Effective length of database: 840,804,529
Effective search space: 26064940399
Effective search space used: 26064940399
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.87  gvh: 0.22  alm: 0.53  top: 0.57  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U01735-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0