Contig-U01734-1 |
Contig ID |
Contig-U01734-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
gap included |
Contig length |
669 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4092739 |
End point |
4093310 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U01734 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 7 |
Homology vs CSM-cDNA |
|
dna update |
2009. 5. 5 |
Homology vs DNA |
Query= Contig-U01734-1 (Contig-U01734-1Q) /CSM_Contig/Contig-U01734-1Q.Seq.d (679 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(U20432) Dictyostelium discoideum TagB (tagB) gene, complete... 341 2e-89 1 (C92705) Dictyostelium discoideum slug cDNA, clone SSF879. 103 4e-38 2 (AU073075) Dictyostelium discoideum slug cDNA, clone SSF879. 161 4e-35 1 (BZ503343) BONDW90TF BO_1.6_2_KB_tot Brassica oleracea genom... 40 0.023 2 (CU633453) Podospora anserina genomic DNA chromosome 3, supe... 50 0.11 1 (AC218628) Bos taurus clone CH240-298P22, WORKING DRAFT SEQU... 36 0.25 2 (ES220070) MpGnorm_ag5_J03 Myzus persicae, tobacco lineage, ... 34 0.33 2 (BV614354) S216P61520RE2.T0 Masuku Pan troglodytes troglodyt... 48 0.44 1 (BV613498) S215P61457FG3.T0 Clara Pan troglodytes troglodyte... 48 0.44 1 (AL356575) Human DNA sequence from clone RP11-340C20 on chro... 48 0.44 1 (EJ902019) 1093018494332 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.44 1 (EI050618) hhd0007ag01.g1 hhd Oryza coarctata genomic clone ... 48 0.44 1 (AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 42 0.76 5 (EK443815) 1095462318486 Global-Ocean-Sampling_GS-32-01-01-1... 40 0.94 2 (DQ029097) Haematobia irritans irritans mitochondrion, compl... 34 1.1 2 (DX080177) KBrB092K06F KBrB, Brassica rapa BamHI BAC library... 34 1.2 2 (DX080173) KBrB092K04F KBrB, Brassica rapa BamHI BAC library... 34 1.2 2 (DX054846) KBrB059D09R KBrB, Brassica rapa BamHI BAC library... 34 1.2 2 (EU401918) Bombus hypocrita sapporoensis mitochondrion, part... 38 1.4 3 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 42 1.6 6 (X13337) Neurospora crassa mitochondrial DNA with duplicatio... 46 1.7 1 (AY548158) Neurospora intermedia isolate M1991-60 tRNA-Met g... 46 1.7 1 (DU884384) 398061 Tomato HindIII BAC Library Solanum lycoper... 46 1.7 1 (CU247088) Equus caballus GSS, BAC clone CH241-391O17, SP6 e... 46 1.7 1 (CU026590) Equus caballus GSS, BAC clone CH241-119D11, SP6 e... 46 1.7 1 (CU026586) Equus caballus GSS, BAC clone CH241-119D9, SP6 en... 46 1.7 1 (GE965196) G1219P113FA16.T0 Neurospora crassa cDNA - 7 Days ... 46 1.7 1 (AP009178) Nitratiruptor sp. SB155-2 genomic DNA, complete g... 46 1.7 1 (AK086902) Mus musculus 0 day neonate lung cDNA, RIKEN full-... 42 2.0 2 (AC098594) Homo sapiens chromosome 4 clone RP11-465C6, compl... 44 2.5 2 (CE714850) tigr-gss-dog-17000369504976 Dog Library Canis lup... 34 3.2 3 (AM613818) Entamoeba invadens IP1 GSS, clone inv040a06.q1k. 36 3.3 2 (AC216704) Solanum lycopersicum chromosome 2 clone C02HBa023... 34 3.4 2 (AK088445) Mus musculus 2 days neonate thymus thymic cells c... 42 3.4 2 (EG551016) MM01G16_RP Sugar Beet germination cDNA library Be... 36 4.1 3 (DY270603) KN0AAP7YC10FM1 Fruit-TF Citrus clementina cDNA 5'... 32 4.4 2 (DQ988057) Sepia pharaonis GofC1 16S ribosomal RNA gene, par... 32 4.6 2 (DQ180983) Idiopteron biplagiatum voucher UPOL 000M44 large ... 32 4.6 2 (AF466309) Dictyostelium discoideum serine protease/ABC tran... 44 6.2 2 (AL589727) Human DNA sequence from clone RP11-104N13 on chro... 38 6.3 3 (BV060129) S212P6098FH6.T0 CZECHII/Ei Mus musculus STS genom... 44 6.9 1 (AC162466) Mus musculus 6 BAC RP23-196O2 (Roswell Park Cance... 44 6.9 1 (AC153898) Mus musculus 6 BAC RP23-55J19 (Roswell Park Cance... 44 6.9 1 (BS000598) Pan troglodytes chromosome Y clone:PTB-224I01, co... 44 6.9 1 (AC147337) Pan troglodytes BAC clone CH251-104M9 from Y, com... 44 6.9 1 (AC146215) Pan troglodytes BAC clone CH251-299B14 from Y, co... 44 6.9 1 (AM447766) Vitis vinifera contig VV78X021622.3, whole genome... 44 6.9 1 (AC215628) Populus trichocarpa clone POP027-K15, complete se... 44 6.9 1 (AR375238) Sequence 244 from patent US 6605709. 44 6.9 1 (AL357333) Human DNA sequence from clone RP11-699H2 on chrom... 44 6.9 1 (AC102450) Mus musculus chromosome 6 clone RP24-219K6 map 6,... 44 6.9 1 (CU915465) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.9 1 (AC068882) Homo sapiens chromosome 4 clone RP11-465C6 map 4,... 44 6.9 1 (AC233054) Medicago truncatula clone mth2-70d13, WORKING DRA... 44 6.9 1 (FH931251) CHO_NF2025xl19f1.ab1 CHO_NF2 Nicotiana tabacum ge... 44 6.9 1 (ER443528) 1092963822123 Global-Ocean-Sampling_GS-35-01-01-1... 44 6.9 1 (ER337690) 1092344318689 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.9 1 (EK368899) 1095469408599 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.9 1 (EK274040) 1095462269680 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.9 1 (EJ910634) 1093018536876 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.9 1 (EJ780189) 1093017245728 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.9 1 (AM614375) Entamoeba invadens IP1 GSS, clone inv048a06.q1k. 44 6.9 1 (EJ357878) 1092963672934 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.9 1 (EI144498) DH001N20_F1.ab1 Brachypodium distachyon Bd21 Hind... 44 6.9 1 (DX518969) DH001YF_N20_N20Z_068.ab1 Brachypodium distachyon ... 44 6.9 1 (DU917824) 336555 Tomato EcoRI BAC Library Solanum lycopersi... 44 6.9 1 (DU491805) 1098415688460 CHORI-243 Ovis aries genomic clone ... 44 6.9 1 (DE958219) Macropus eugenii DNA, BAC clone: MEB1-158L24_F, 5... 44 6.9 1 (BZ395635) EINAK47TF EI_10_12_KB Entamoeba invadens genomic ... 44 6.9 1 (BZ393256) EINAI49TR EI_10_12_KB Entamoeba invadens genomic ... 44 6.9 1 (CP000767) Campylobacter curvus 525.92, complete genome. 44 6.9 1 (CP000678) Methanobrevibacter smithii ATCC 35061, complete g... 44 6.9 1 (BX950229) Methanococcus maripaludis strain S2, complete seq... 44 6.9 1 (AM942759) Proteus mirabilis strain HI4320, complete genome. 44 6.9 1 (AM698041) Vanderwaltozyma polyspora partial mitochondrial g... 36 8.9 3 (AC232030) Solanum tuberosum chromosome 1 clone RH055P15, **... 40 8.9 2 (EF073163) Adelges viridis voucher CNC HEM053419 cytochrome ... 38 9.5 2 (EF073126) Adelges abietis voucher CNC HEM054125 cytochrome ... 38 9.5 2 (EF073125) Adelges abietis voucher CNC HEM054096 cytochrome ... 38 9.5 2 (EF073124) Adelges abietis voucher CNC HEM054069 cytochrome ... 38 9.5 2 (EF073123) Adelges abietis voucher CNC HEM053176 cytochrome ... 38 9.5 2
>(U20432) Dictyostelium discoideum TagB (tagB) gene, complete cds. Length = 6115
Score = 341 bits (172), Expect = 2e-89 Identities = 175/176 (99%) Strand = Plus / Plus
Query: 160 tgaaatttcaattttcatcgcccagtaaaatatttctgttttcaagtgtaattttgatat 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 170 tgaaatttcaattttcatcgcccagtaaaatatttctgttttcaagtgtaattttgatat 229
Query: 220 taatatttataggaataaaatttgaactacttgaagatacaaatagcaacagaaatgata 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 taatatttataggaataaaatttgaactacttgaagatacaaatagcaacagaaatgata 289
Query: 280 aatttaataatataattactagatttataaattataatatcgatgactcaatttat 335 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 290 aatttaataatataattaatagatttataaattataatatcgatgactcaatttat 345
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 421,816,764 Number of extensions: 27463815 Number of successful extensions: 2367866 Number of sequences better than 10.0: 83 Length of query: 679 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 655 Effective length of database: 99,340,224,878 Effective search space: 65067847295090 Effective search space used: 65067847295090 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.18 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |