Contig-U11109-1
Contig ID Contig-U11109-1
Contig update 2002.12.18
Contig sequence
>Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Contig-U11109-1Q.Seq.d
AGTTACATCAAATAAATTTAAAGCGGATAAACAATATTTAATTAAATGGA
AATCCATTAGTTATTCATTGTCAACATGGGAATATCAAGATGATTTTAAA
GATGATTTAAAGATTGAACAATATTATAAATTGAATGAAATGCCATCAAA
AGAAGAGTTGAGAGATAAACCAAGACCACCTAGAACCGCATGGAAAAAGA
TTGATCAAAGTCCAGACTATTTCACAAAGGGTAATAAATTAAGACCATAC
CAATTGGAAGGTTTAAATTGGTTATCATTCTGTTGGCATGAACAAAGAAA
CTCGATATTGGGTGATGAAATGGGCTTGGGTAAAACAGTACAAAGTGTAT
CAATACTTGAAACACTTAGAAAAGTACATGGTATACGTGGTCCTTTCTTG
GTGGTTGCACCTTTGACAACCATTCCTCATTGGAAAAGAGAGTTTGAAAA
TTGGACCGATATGAATGCATTGGTTTATCATGATTCAGGTGCTGGTCGTC
CAATTTGTAGAAATTATGAATTCTATTTAAAAGATAAAGATGGTGGTGGT
GGTGGTGCTAGTGGTGGTGCTAGTGGAAAGATCACTAAATTCAATGTATT
GATTACAACCTATGAAATGGCAATTACAGATCGTACACATCTATCAAGAA
TACCATGGAAATATTTAGTTATTGATGAAGCACATCGTTTAAAGAATAAA
TCATGTAA----------NNNNNNNNNNAGACAAAGAAAGAATGTTCAAA
NATTTGGNACATTTAAAGATCATGAAGAATCATCAGATGATGAAGAACAA
TTTGATTTTGAACCTGATGAAGATGATGAGTCAACTANAGATATTGGTGG
AATTAATGGTACTATTGGTGGTCAAAACTNTATTAATAAAAGTTGGACAG
CTGGTGAAAGAAATNAATTAAAATCAGCAATGCTTGCTTATGGTAGTAGT
AGATGGGATTTAATTAAAACAGTTGNTGGTTTAAAACGTTGGTCAGTTGA
ACAAGTTAGACAATATGGTAGAGCTTTNTTACATAAGGTTTTATCNAATT
ATAACTNTGATAAANAAATACCTGAAAATAATAAATTCNCNATGGATATG
ATGAATGCTTTAGTAGTGGAATTAGAACCNTCNATTCATAGTTATCNTTT
ANAAAAAAAAACGTTTATTCGATTTAGAATTAAAACAAAATGAAGAAGAG
GAAAATAATAATAATAATGATAATGATAAAGTTAACTCTGATTCAATGAA
AAGGAATCATCATCATCATCATCATCATCNCCATCTTCAAATATTAATCA
AGATAATTCNATNAAAAAAAAGNAAAAANAAAAAAAN

Gap gap included
Contig length 1327
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3617545
End point 3616225
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U11109
List of clone(s)

est1=AHP486F,1,582
est2=AHA337F,102,708
est3=AHA337Z,709,1318
Translated Amino Acid sequence
VTSNKFKADKQYLIKWKSISYSLSTWEYQDDFKDDLKIEQYYKLNEMPSKEELRDKPRPP
RTAWKKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILE
TLRKVHGIRGPFLVVAPLTTIPHWKREFENWTDMNALVYHDSGAGRPICRNYEFYLKDKD
GGGGGASGGASGKITKFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSC---

---XXXRQRKNVQXFGTFKDHEESSDDEEQFDFEPDEDDESTXDIGGINGTIGGQNXINK
SWTAGERNXLKSAMLAYGSSRWDLIKTVXGLKRWSVEQVRQYGRAXLHKVLSNYNXDKXI
PENNKFXMDMMNALVVELEPSIHSYXLXKKTFIRFRIKTK*rrgk********s*l*fne
kesssssssspssninqdnsxkkkxkxkx


Translated Amino Acid sequence (All Frames)
Frame A:
syik*i*sg*tifn*meih*lfivnmgisr*f*r*fkd*til*ie*naikrrver*tktt
*nrmekd*sksrlfhkg**iktipigrfklviilla*tkkldig**nglg*nstkcint*
nt*kstwytwsflggctfdnhsslekrv*kldryecigls*frcwssnl*kl*ilfkr*r
wwwwwc*wwc*wkdh*iqcidynl*ngnyrsytsikntmeifsy**stsfke*im*---

---xxxxtkkecsxiwxi*rs*riir**rti*f*t**r**vnxrywwn*wyywwskly**
kldsw*kkxikisnaclw***mgfn*nsxwfktlvs*ts*tiw*sfxt*gfixl*l**xn
t*k**ixxgydecfssgirtxxs*lsfxkknvysi*n*nkmkkrkiiiimimikltliq*
kgiiiiiiiixifky*sr*fxxkkxkxkk

Frame B:
VTSNKFKADKQYLIKWKSISYSLSTWEYQDDFKDDLKIEQYYKLNEMPSKEELRDKPRPP
RTAWKKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILE
TLRKVHGIRGPFLVVAPLTTIPHWKREFENWTDMNALVYHDSGAGRPICRNYEFYLKDKD
GGGGGASGGASGKITKFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSC---

---XXXRQRKNVQXFGTFKDHEESSDDEEQFDFEPDEDDESTXDIGGINGTIGGQNXINK
SWTAGERNXLKSAMLAYGSSRWDLIKTVXGLKRWSVEQVRQYGRAXLHKVLSNYNXDKXI
PENNKFXMDMMNALVVELEPSIHSYXLXKKTFIRFRIKTK*rrgk********s*l*fne
kesssssssspssninqdnsxkkkxkxkx

Frame C:
lhqinlkrinni*lngnplvihcqhgnikmilkmi*rlnniin*mkchqkks*einqdhl
ephgkrlikvqtisqrvin*dhtnwkv*igyhsvgmnketrywvmkwawvkqykvyqylk
hlekymvyvvlswwlhl*qpfligkeslkigpi*mhwfimiqvlvvqfveimnsi*kikm
vvvvvlvvvlverslnsmy*lqpmkwqlqivhiyqeyhgni*llmkhiv*rinhv---

---xxxdkermfkxlxhlkimknhqmmknnlilnlmkmmsqlxilvelmvllvvktxlik
vgqlvkexn*nqqcllmvvvdgi*lkqlxv*nvgqlnkldnmvelxyirfyxiitxixky
lkiinsxwi**ml**wn*nxxfivixxkkkrlfdlelkqneeeennnnndndkvnsdsmk
rnhhhhhhhxhlqilikiixxkkxkxkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11109-1 (Contig-U11109-1Q)
/CSM_Contig/Contig-U11109-1Q.Seq.d
(1337 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Conti... 1070 0.0
Contig-U10354-1 (Contig-U10354-1Q) /CSM_Contig/Conti... 52 2e-06
Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U10406-1 (Contig-U10406-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U09287-1 (Contig-U09287-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U01737-1 (Contig-U01737-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U11851-1 (Contig-U11851-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U09339-1 (Contig-U09339-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U06294-1 (Contig-U06294-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U01319-1 (Contig-U01319-1Q) /CSM_Contig/Conti... 48 2e-05

>Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Contig-U11109-1Q.Seq.d
Length = 1337

Score = 1070 bits (540), Expect = 0.0
Identities = 540/540 (100%)
Strand = Plus / Plus


Query: 1 agttacatcaaataaatttaaagcggataaacaatatttaattaaatggaaatccattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttacatcaaataaatttaaagcggataaacaatatttaattaaatggaaatccattag 60


Query: 61 ttattcattgtcaacatgggaatatcaagatgattttaaagatgatttaaagattgaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttattcattgtcaacatgggaatatcaagatgattttaaagatgatttaaagattgaaca 120


Query: 121 atattataaattgaatgaaatgccatcaaaagaagagttgagagataaaccaagaccacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atattataaattgaatgaaatgccatcaaaagaagagttgagagataaaccaagaccacc 180


Query: 181 tagaaccgcatggaaaaagattgatcaaagtccagactatttcacaaagggtaataaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagaaccgcatggaaaaagattgatcaaagtccagactatttcacaaagggtaataaatt 240


Query: 241 aagaccataccaattggaaggtttaaattggttatcattctgttggcatgaacaaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagaccataccaattggaaggtttaaattggttatcattctgttggcatgaacaaagaaa 300


Query: 301 ctcgatattgggtgatgaaatgggcttgggtaaaacagtacaaagtgtatcaatacttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcgatattgggtgatgaaatgggcttgggtaaaacagtacaaagtgtatcaatacttga 360


Query: 361 aacacttagaaaagtacatggtatacgtggtcctttcttggtggttgcacctttgacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacacttagaaaagtacatggtatacgtggtcctttcttggtggttgcacctttgacaac 420


Query: 421 cattcctcattggaaaagagagtttgaaaattggaccgatatgaatgcattggtttatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattcctcattggaaaagagagtttgaaaattggaccgatatgaatgcattggtttatca 480


Query: 481 tgattcaggtgctggtcgtccaatttgtagaaattatgaattctatttaaaagataaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgattcaggtgctggtcgtccaatttgtagaaattatgaattctatttaaaagataaaga 540


Score = 860 bits (434), Expect = 0.0
Identities = 512/527 (97%)
Strand = Plus / Plus


Query: 729 agacaaagaaagaatgttcaaanatttggnacatttaaagatcatgaagaatcatcagat 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agacaaagaaagaatgttcaaanatttggnacatttaaagatcatgaagaatcatcagat 788


Query: 789 gatgaagaacaatttgattttgaacctgatgaagatgatgagtcaactanagatattggt 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gatgaagaacaatttgattttgaacctgatgaagatgatgagtcaactanagatattggt 848


Query: 849 ggaattaatggtactattggtggtcaaaactntattaataaaagttggacagctggtgaa 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ggaattaatggtactattggtggtcaaaactntattaataaaagttggacagctggtgaa 908


Query: 909 agaaatnaattaaaatcagcaatgcttgcttatggtagtagtagatgggatttaattaaa 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 agaaatnaattaaaatcagcaatgcttgcttatggtagtagtagatgggatttaattaaa 968


Query: 969 acagttgntggtttaaaacgttggtcagttgaacaagttagacaatatggtagagctttn 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 acagttgntggtttaaaacgttggtcagttgaacaagttagacaatatggtagagctttn 1028


Query: 1029 ttacataaggttttatcnaattataactntgatnnnnnnntacctgaaaataataaattc 1088
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1029 ttacataaggttttatcnaattataactntgataaanaaatacctgaaaataataaattc 1088


Query: 1089 ncnatggatatgatgaatgctttagtagtggaattagaaccntcnattcatagttatcnt 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 ncnatggatatgatgaatgctttagtagtggaattagaaccntcnattcatagttatcnt 1148


Query: 1149 ttannnnnnnnnncgtttattcgatttagaattaaaacaaaatgaagaagaggaaaataa 1208
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 ttanaaaaaaaaacgtttattcgatttagaattaaaacaaaatgaagaagaggaaaataa 1208


Query: 1209 taataataatgataatgataaagttaactctgattcaatgaaaagga 1255
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 taataataatgataatgataaagttaactctgattcaatgaaaagga 1255


Score = 262 bits (132), Expect = 9e-70
Identities = 132/132 (100%)
Strand = Plus / Plus


Query: 577 aaagatcactaaattcaatgtattgattacaacctatgaaatggcaattacagatcgtac 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaagatcactaaattcaatgtattgattacaacctatgaaatggcaattacagatcgtac 636


Query: 637 acatctatcaagaataccatggaaatatttagttattgatgaagcacatcgtttaaagaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acatctatcaagaataccatggaaatatttagttattgatgaagcacatcgtttaaagaa 696


Query: 697 taaatcatgtaa 708
||||||||||||
Sbjct: 697 taaatcatgtaa 708


Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 1281 ccatcttcaaatattaatcaagataattc 1309
|||||||||||||||||||||||||||||
Sbjct: 1281 ccatcttcaaatattaatcaagataattc 1309


>Contig-U10354-1 (Contig-U10354-1Q) /CSM_Contig/Contig-U10354-1Q.Seq.d
Length = 1222

Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1201 gaaaataataataataatgataatga 1226
||||||||||||||||||||||||||
Sbjct: 502 gaaaataataataataatgataatga 527


>Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Contig-U12923-1Q.Seq.d
Length = 1364

Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1202 aaaataataataataatgataatga 1226
|||||||||||||||||||||||||
Sbjct: 1340 aaaataataataataatgataatga 1364


Score = 38.2 bits (19), Expect = 0.024
Identities = 25/27 (92%)
Strand = Plus / Plus


Query: 1203 aaataataataataatgataatgataa 1229
|||||||||||||||| ||||| ||||
Sbjct: 972 aaataataataataataataataataa 998


Score = 36.2 bits (18), Expect = 0.095
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1204 aataataataataatgataatgataa 1229
||||||||||||||| ||||| ||||
Sbjct: 976 aataataataataataataataataa 1001


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,671
Number of Sequences: 6905
Number of extensions: 35671
Number of successful extensions: 13731
Number of sequences better than 10.0: 1843
length of query: 1337
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1321
effective length of database: 5,564,391
effective search space: 7350560511
effective search space used: 7350560511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Contig-U11109-1Q.Seq.d
(1337 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ338532) Dictyostelium discoideum cDNA clone:dda61l22, 5' ... 1070 0.0 1
(BJ330385) Dictyostelium discoideum cDNA clone:dda31j09, 5' ... 870 0.0 2
(BJ347844) Dictyostelium discoideum cDNA clone:dda31j09, 3' ... 749 0.0 4
(CD570433) kb67a05.y1 Brugia malayi 2D L3 pAMP1 v2 Brugia ma... 42 3e-06 3
(AZ546145) ENTDI84TR Entamoeba histolytica Sheared DNA Entam... 42 7e-06 3
(BH139271) ENTOC65TR Entamoeba histolytica Sheared DNA Entam... 42 7e-06 3
(BJ421638) Dictyostelium discoideum cDNA clone:ddv43h11, 5' ... 46 2e-04 3
(BJ339261) Dictyostelium discoideum cDNA clone:dda64o18, 5' ... 40 6e-04 3
(AY413481) Homo sapiens CHD1 gene, VIRTUAL TRANSCRIPT, parti... 36 7e-04 4
(BJ422540) Dictyostelium discoideum cDNA clone:ddv46c08, 5' ... 40 7e-04 3
(BU375293) 603813505F1 CSEQCHN74 Gallus gallus cDNA clone Ch... 58 9e-04 1
(BU293596) 603606459F1 CSEQCHN55 Gallus gallus cDNA clone Ch... 58 9e-04 1
(DD070097) CHDs AS MODIFIERS OF THE p53 PATHWAY AND METHODS ... 36 0.002 4
(BC117134) Homo sapiens chromodomain helicase DNA binding pr... 36 0.002 4
(CQ722998) Sequence 8932 from Patent WO02068579. 36 0.002 4
(DJ032960) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION. 36 0.002 4
(DD070098) CHDs AS MODIFIERS OF THE p53 PATHWAY AND METHODS ... 36 0.002 4
(CS350707) Sequence 91 from Patent WO2006013561. 36 0.002 4
(AF006513) Homo sapiens CHD1 mRNA, complete cds. 36 0.002 4
(A58691) Sequence 10 from Patent WO9639505. 38 0.004 3
(AF004397) Gallus gallus chromo-helicase-DNA-binding on the ... 38 0.004 3
(BJ324907) Dictyostelium discoideum cDNA clone:dda8l17, 5' e... 40 0.015 2
(AZ550892) ENTGR91TF Entamoeba histolytica Sheared DNA Entam... 42 0.021 2
(AC008531) Homo sapiens chromosome 5 clone CTC-480B11, WORKI... 36 0.022 8
(BD376770) Compositions and methods for the modification of ... 42 0.045 2
(AR617513) Sequence 405 from patent US 6833446. 42 0.045 2
(FE709627) Pv017B_M13F_D01.ab1 Phaseolus vulgaris cv Early g... 52 0.055 1
(AM674639) Entamoeba terrapinae GSS, clone terra278b04.p1k. 44 0.071 2
(AZ924749) 4906.id55e03.s1 Saccharomyces mikatae IFO 1815 Sa... 38 0.17 2
(AY217131) Taeniopygia guttata chromo-helicase DNA-binding p... 38 0.19 3
(AC022121) Homo sapiens chromosome 5 clone CTD-2007H13, comp... 36 0.19 8
(AY413482) Pan troglodytes CHD1 gene, VIRTUAL TRANSCRIPT, pa... 36 0.20 3
(AC092372) Homo sapiens chromosome 5 clone RP11-58M12, compl... 36 0.22 7
(BV540870) G591P50397RH3.T0 Clint Pan troglodytes verus STS ... 50 0.22 1
(BV537813) G591P638894RC9.T0 Clint Pan troglodytes verus STS... 50 0.22 1
(BV516509) rrh38f07.b1 Clint Pan troglodytes verus STS genom... 50 0.22 1
(BV503513) qkw18c04.b1 Clint Pan troglodytes verus STS genom... 50 0.22 1
(AL954240) Pan troglodytes chromosome 22 clone PTB-045O21 ma... 50 0.22 1
(AL954239) Pan troglodytes chromosome 22 clone PTB-028I09 ma... 50 0.22 1
(AP007166) Aspergillus oryzae RIB40 genomic DNA, SC113. 50 0.22 1
(AL773575) Homo sapiens chromosome 21 from PAC RP1-269A14 ma... 50 0.22 1
(AL773570) Homo sapiens chromosome 21 from cosmid LL21NC02-4... 50 0.22 1
(AL163285) Homo sapiens chromosome 21 segment HS21C085. 50 0.22 1
(AL627243) Rattus norvegicus chromosome 20 clone PAC RPCI-31... 50 0.22 1
(DT612878) ACAG-aaa22h05.g1 Hydra_EST_UCI-9 Hydra magnipapil... 50 0.22 1
(DT612858) ACAG-aaa17f12.g1 Hydra_EST_UCI-9 Hydra magnipapil... 50 0.22 1
(DT611071) ACAG-aab14b09.g1 Hydra_EST_UCI-9 Hydra magnipapil... 50 0.22 1
(DT610002) ACAG-aaa58c07.g1 Hydra_EST_UCI-9 Hydra magnipapil... 50 0.22 1
(DN815746) ACAC-aac14c16.g1 Hydra EST UCI 7 Hydra magnipapil... 50 0.22 1
(DN248007) ACAE-aaa53j08.g1 Hydra EST UCI 5 Hydra magnipapil... 50 0.22 1
(DN246817) ACAE-aaa18o07.g1 Hydra EST UCI 5 Hydra magnipapil... 50 0.22 1
(DN138471) ACAE-aaa15g06.g1 Hydra EST UCI 5 Hydra magnipapil... 50 0.22 1
(DB297712) Homo sapiens cDNA clone BRACE2026816, 3' end, mRN... 50 0.22 1
(CX633298) taj38f11.y3 Hydra EST UCI 5 Hydra magnipapillata ... 50 0.22 1
(AI570246) to76g10.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone ... 50 0.22 1
(AI570227) to76e10.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone ... 50 0.22 1
(FK902601) EST_lsal_evj_855113 lsalevj mixed_tissue_mixed_st... 50 0.22 1
(EY534580) CAPF8573.fwd CAPF Capitella sp. I ECS-2004 whole ... 50 0.22 1
(BM491730) pgp2n.pk007.e18 Normalized Chicken Pituitary/Hypo... 38 0.22 2
(AF181826) Gallus gallus chromosome W chromodomain helicase ... 38 0.24 2
(AC205554) Zea mays chromosome 8 clone CH201-325A2; ZMMBBc03... 46 0.28 5
(BX936398) Yersinia pseudotuberculosis IP32953 genome, compl... 36 0.39 2
(CP000308) Yersinia pestis Antiqua, complete genome. 36 0.39 2
(CP001048) Yersinia pseudotuberculosis PB1/+, complete genome. 36 0.39 2
(CP000950) Yersinia pseudotuberculosis YPIII, complete genome. 36 0.39 2
(AL590842) Yersinia pestis CO92 complete genome. 36 0.39 2
(AE009952) Yersinia pestis KIM, complete genome. 36 0.39 2
(AE017042) Yersinia pestis biovar Microtus str. 91001, compl... 36 0.39 2
(CP000305) Yersinia pestis Nepal516, complete genome. 36 0.39 2
(CP000668) Yersinia pestis Pestoides F, complete genome. 36 0.39 2
(CP000901) Yersinia pestis Angola, complete genome. 36 0.39 2
(D67574) Caenorhabditis elegans cDNA clone yk54c11 : 5' end,... 42 0.47 2
(C65875) Caenorhabditis elegans cDNA clone yk405g5 : 5' end,... 42 0.47 2
(C65769) Caenorhabditis elegans cDNA clone yk395c5 : 5' end,... 42 0.47 2
(C60363) Caenorhabditis elegans cDNA clone yk195f1 : 5' end,... 42 0.47 2
(AM438790) Vitis vinifera contig VV78X074483.16, whole genom... 40 0.58 2
(AY217130) Taeniopygia guttata chromo-helicase DNA-binding p... 38 0.64 3
(AY217129) Taeniopygia guttata chromo-helicase DNA-binding p... 38 0.67 3
(AC127210) Rattus norvegicus clone CH230-82K9, *** SEQUENCIN... 44 0.74 3
(AC012624) Homo sapiens chromosome 5 clone CTD-2082I17, comp... 36 0.80 7
(AZ542570) ENTEV86TF Entamoeba histolytica Sheared DNA Entam... 34 0.82 3
(AF181824) Aegolius funereus chromosome W chromodomain helic... 38 0.85 2
(AC198098) Nomascus leucogenys BAC clone CH271-423I16 from c... 48 0.87 1
(AC186588) Zea mays chromosome 6 clone ZMMBBb-152J13; ZMMBBb... 48 0.87 1
(AZ527897) ENTDC73TF Entamoeba histolytica Sheared DNA Entam... 48 0.87 1
(EK084896) 1092961136594 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.87 1
(DW267060) UI-S-GN1-abr-p-20-0-UI.s1 UI-S-GN1 Euprymna scolo... 48 0.87 1
(CT756198) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 0.87 1
(CJ396763) Molgula tectiformis cDNA, gonad clone:mtgd029e12,... 48 0.87 1
(CU326393) Medicago truncatula chromosome 5 clone mth4-5l6, ... 42 2.1 5
(AL409731) T7 end of clone XAV0AA001F08 of library XAV0AA fr... 34 2.3 2
(AE017263) Mesoplasma florum L1 complete genome. 40 2.3 15
(CZ541778) SRAA-aad40c06.g1 Strongyloides ratti whole genome... 32 2.4 2
(BJ328125) Dictyostelium discoideum cDNA clone:dda23e02, 5' ... 42 2.6 2
(BJ423766) Dictyostelium discoideum cDNA clone:ddv50h07, 5' ... 42 3.0 2
(CP000582) Ostreococcus lucimarinus CCE9901 chromosome 2, co... 46 3.4 1
(AC126284) Rattus norvegicus clone CH230-40G5, *** SEQUENCIN... 46 3.4 1
(AC115516) Rattus norvegicus clone CH230-261A22, WORKING DRA... 46 3.4 1
(AC209357) Zea mays chromosome 6 clone CH201-109D4; ZMMBBc01... 46 3.4 1
(AC191608) Zea mays chromosome 6 clone ZMMBBb-395K14; ZMMBBb... 46 3.4 1

>(BJ338532) Dictyostelium discoideum cDNA clone:dda61l22, 5' end,
single read.
Length = 582

Score = 1070 bits (540), Expect = 0.0
Identities = 540/540 (100%)
Strand = Plus / Plus


Query: 1 agttacatcaaataaatttaaagcggataaacaatatttaattaaatggaaatccattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttacatcaaataaatttaaagcggataaacaatatttaattaaatggaaatccattag 60


Query: 61 ttattcattgtcaacatgggaatatcaagatgattttaaagatgatttaaagattgaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttattcattgtcaacatgggaatatcaagatgattttaaagatgatttaaagattgaaca 120


Query: 121 atattataaattgaatgaaatgccatcaaaagaagagttgagagataaaccaagaccacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atattataaattgaatgaaatgccatcaaaagaagagttgagagataaaccaagaccacc 180


Query: 181 tagaaccgcatggaaaaagattgatcaaagtccagactatttcacaaagggtaataaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagaaccgcatggaaaaagattgatcaaagtccagactatttcacaaagggtaataaatt 240


Query: 241 aagaccataccaattggaaggtttaaattggttatcattctgttggcatgaacaaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagaccataccaattggaaggtttaaattggttatcattctgttggcatgaacaaagaaa 300


Query: 301 ctcgatattgggtgatgaaatgggcttgggtaaaacagtacaaagtgtatcaatacttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcgatattgggtgatgaaatgggcttgggtaaaacagtacaaagtgtatcaatacttga 360


Query: 361 aacacttagaaaagtacatggtatacgtggtcctttcttggtggttgcacctttgacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacacttagaaaagtacatggtatacgtggtcctttcttggtggttgcacctttgacaac 420


Query: 421 cattcctcattggaaaagagagtttgaaaattggaccgatatgaatgcattggtttatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattcctcattggaaaagagagtttgaaaattggaccgatatgaatgcattggtttatca 480


Query: 481 tgattcaggtgctggtcgtccaatttgtagaaattatgaattctatttaaaagataaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgattcaggtgctggtcgtccaatttgtagaaattatgaattctatttaaaagataaaga 540

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,375,014,394
Number of extensions: 83549890
Number of successful extensions: 6902308
Number of sequences better than 10.0: 145
Length of query: 1337
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1313
Effective length of database: 97,308,875,965
Effective search space: 127766554142045
Effective search space used: 127766554142045
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Contig-U11109-1Q.Seq.d
(1337 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE014134_63(AE014134|pid:none) Drosophila melanogaster chromosom... 240 7e-62
AE014134_62(AE014134|pid:none) Drosophila melanogaster chromosom... 240 7e-62
(B0R0I6) RecName: Full=Chromodomain-helicase-DNA-binding protein... 218 5e-55
AL928674_21(AL928674|pid:none) Zebrafish DNA sequence from clone... 218 5e-55
AB037837_1(AB037837|pid:none) Homo sapiens mRNA for KIAA1416 pro... 215 3e-54
(A2AJK6) RecName: Full=Chromodomain-helicase-DNA-binding protein... 215 3e-54
AK000368_1(AK000368|pid:none) Homo sapiens cDNA FLJ20361 fis, cl... 215 3e-54
BC168549_1(BC168549|pid:none) Xenopus tropicalis cDNA clone MGC:... 213 1e-53
(B5DE69) RecName: Full=Chromodomain-helicase-DNA-binding protein... 213 1e-53
AY647157_1(AY647157|pid:none) Homo sapiens KISH2 (KISH2) mRNA, c... 213 2e-53
(Q3L8U1) RecName: Full=Chromodomain-helicase-DNA-binding protein... 213 2e-53
DQ333316_1(DQ333316|pid:none) Homo sapiens PRIC320 isoform 1 mRN... 212 2e-53
(Q8BYH8) RecName: Full=Chromodomain-helicase-DNA-binding protein... 210 1e-52
(Q09XV5) RecName: Full=Chromodomain-helicase-DNA-binding protein... 207 5e-52
BC168553_1(BC168553|pid:none) Xenopus tropicalis chromodomain he... 207 7e-52
(Q8TBR9) RecName: Full=Chromodomain-helicase-DNA-binding protein... 207 9e-52
BC156439_1(BC156439|pid:none) Synthetic construct Homo sapiens c... 207 9e-52
AB046784_1(AB046784|pid:none) Homo sapiens mRNA for KIAA1564 pro... 207 9e-52
(Q9JIX5) RecName: Full=Chromodomain-helicase-DNA-binding protein... 206 1e-51
AL590430_1(AL590430|pid:none) Mouse DNA sequence from clone RP23... 206 2e-51
AL590430_2(AL590430|pid:none) Mouse DNA sequence from clone RP23... 206 2e-51
AK080927_1(AK080927|pid:none) Mus musculus 4 days neonate male a... 206 2e-51
BC150806_1(BC150806|pid:none) Mus musculus chromodomain helicase... 206 2e-51
(Q9H6D4) RecName: Full=Chromodomain-helicase-DNA-binding protein... 205 3e-51
AK296955_1(AK296955|pid:none) Homo sapiens cDNA FLJ59295 partial... 205 3e-51
AK018129_1(AK018129|pid:none) Mus musculus adult male medulla ob... 202 2e-50
AK086118_1(AK086118|pid:none) Mus musculus 15 days embryo head c... 198 3e-49
FN357317_37(FN357317|pid:none) Schistosoma mansoni genome sequen... 196 2e-48
T33152(T33152)hypothetical protein T04D1.4 - Caenorhabditis eleg... 190 1e-46
AL031667_6(AL031667|pid:none) Human DNA sequence from clone RP4-... 181 4e-44
AC141111_16(AC141111|pid:none) Medicago truncatula clone mth2-20... 179 2e-43
AK040994_1(AK040994|pid:none) Mus musculus adult male aorta and ... 176 2e-42
AL391737_32(AL391737|pid:none) chromosome I of strain GB-M1 of E... 175 3e-42
AK221299_1(AK221299|pid:none) Arabidopsis thaliana mRNA for pseu... 174 8e-42
(O14139) RecName: Full=Chromodomain helicase hrp3; EC=3... 170 9e-41
CU633901_345(CU633901|pid:none) Podospora anserina genomic DNA c... 170 9e-41
CR382129_11(CR382129|pid:none) Yarrowia lipolytica strain CLIB12... 169 2e-40
(Q9US25) RecName: Full=Chromodomain helicase hrp1; EC=3... 169 2e-40
AF308445_1(AF308445|pid:none) Caenorhabditis elegans LET-418 (le... 168 5e-40
AP007169_330(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 165 3e-39
BC155799_1(BC155799|pid:none) Danio rerio wu:fd12d03, mRNA (cDNA... 164 5e-39
AY062186_1(AY062186|pid:none) Oryza sativa chromatin-remodeling ... 163 1e-38
AP008212_463(AP008212|pid:none) Oryza sativa (japonica cultivar-... 163 1e-38
AP005919_4(AP005919|pid:none) Oryza sativa Japonica Group genomi... 163 1e-38
AK153826_1(AK153826|pid:none) Mus musculus 2 days neonate thymus... 162 3e-38
(Q14839) RecName: Full=Chromodomain-helicase-DNA-binding protein... 162 3e-38
(Q6PDQ2) RecName: Full=Chromodomain-helicase-DNA-binding protein... 162 3e-38
AK220473_1(AK220473|pid:none) Mus musculus mRNA for mKIAA4075 pr... 162 3e-38
Z92970_2(Z92970|pid:none) Caenorhabditis elegans Fosmid H06O01, ... 161 4e-38
T23056(T23056)chromodomain helicase H06O01.2 - Caenorhabditis el... 161 4e-38
AE017349_101(AE017349|pid:none) Cryptococcus neoformans var. neo... 161 4e-38
AL117491_1(AL117491|pid:none) Homo sapiens mRNA; cDNA DKFZp434N2... 161 6e-38
CS300694_1(CS300694|pid:none) Sequence 202 from Patent EP1661986. 161 6e-38
AL031847_16(AL031847|pid:none) Human DNA sequence from clone RP1... 161 6e-38
BC133719_1(BC133719|pid:none) Xenopus tropicalis chromodomain he... 161 6e-38
AE016820_492(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 161 6e-38
(Q8TDI0) RecName: Full=Chromodomain-helicase-DNA-binding protein... 161 6e-38
AK127046_1(AK127046|pid:none) Homo sapiens cDNA FLJ45103 fis, cl... 161 6e-38
BC046866_1(BC046866|pid:none) Xenopus laevis chromodomain helica... 160 1e-37
FN392320_97(FN392320|pid:none) Pichia pastoris GS115 chromosome ... 160 1e-37
AM920431_481(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 160 1e-37
CR380958_504(CR380958|pid:none) Candida glabrata strain CBS138 c... 159 2e-37
(Q9S775) RecName: Full=CHD3-type chromatin-remodeling factor PIC... 159 3e-37
AM270162_16(AM270162|pid:none) Aspergillus niger contig An08c007... 157 6e-37
AB016874_14(AB016874|pid:none) Arabidopsis thaliana genomic DNA,... 157 6e-37
(Q22516) RecName: Full=Chromodomain-helicase-DNA-binding protein... 157 1e-36
CU928174_486(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 157 1e-36
CU928171_608(CU928171|pid:none) Kluyveromyces thermotolerans str... 156 1e-36
CP000500_338(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 154 7e-36
B84645(B84645)hypothetical protein At2g25170 [imported] - Arabid... 154 9e-36
AK292850_1(AK292850|pid:none) Homo sapiens cDNA FLJ76689 partial... 153 1e-35
AF006514_1(AF006514|pid:none) Homo sapiens CHD2 mRNA, complete c... 153 1e-35
BT011071_1(BT011071|pid:none) Drosophila melanogaster SD21488 fu... 153 2e-35
AL596125_1(AL596125|pid:none) Mouse DNA sequence from clone RP23... 149 3e-34
AL596125_2(AL596125|pid:none) Mouse DNA sequence from clone RP23... 149 3e-34
AY903245_1(AY903245|pid:none) Rattus norvegicus strain WHD chrom... 148 5e-34
AY903247_1(AY903247|pid:none) Rattus norvegicus strain SHRSP chr... 148 5e-34
AF007780_1(AF007780|pid:none) Drosophila melanogaster CHD3 mRNA,... 147 6e-34
U91543_1(U91543|pid:none) Homo sapiens zinc-finger helicase (hZF... 147 8e-34
(Q12873) RecName: Full=Chromodomain-helicase-DNA-binding protein... 147 8e-34
BC156472_1(BC156472|pid:none) Synthetic construct Homo sapiens c... 147 8e-34
AB326217_1(AB326217|pid:none) Gekko hokouensis CHD1 mRNA for chr... 146 2e-33
AB185399_1(AB185399|pid:none) Elaphe quadrivirgata CHD1 mRNA for... 145 2e-33
(O14646) RecName: Full=Chromodomain-helicase-DNA-binding protein... 145 3e-33
DQ402511_1(DQ402511|pid:none) Bombyx mori CHD1 (CHD1) mRNA, comp... 145 3e-33
BC115822_1(BC115822|pid:none) Mus musculus chromodomain helicase... 145 3e-33
AK140386_1(AK140386|pid:none) Mus musculus 4 days neonate thymus... 145 3e-33
(P40201) RecName: Full=Chromodomain-helicase-DNA-binding protein... 145 3e-33
BC117134_1(BC117134|pid:none) Homo sapiens chromodomain helicase... 145 3e-33
AE014296_3433(AE014296|pid:none) Drosophila melanogaster chromos... 144 7e-33
AF119716_1(AF119716|pid:none) Drosophila melanogaster dMi-2 prot... 144 7e-33
AL110281_1(AL110281|pid:none) Homo sapiens mRNA; cDNA DKFZp434K2... 143 1e-32
AF004397_1(AF004397|pid:none) Gallus gallus chromo-helicase-DNA-... 142 2e-32
AF181828_1(AF181828|pid:none) Nymphicus hollandicus chromosome Z... 142 3e-32
AF181824_1(AF181824|pid:none) Aegolius funereus chromosome W chr... 141 5e-32
AY217131_1(AY217131|pid:none) Taeniopygia guttata chromo-helicas... 139 3e-31
CP001575_88(CP001575|pid:none) Micromonas sp. RCC299 chromosome ... 136 2e-30
(Q08773) RecName: Full=ISWI chromatin-remodeling complex ATPase ... 133 1e-29
FN357585_11(FN357585|pid:none) Schistosoma mansoni genome sequen... 132 2e-29
A42091(A42091) transcription activator SNF2/SWI2 homolog brm - f... 130 1e-28
AE014296_2753(AE014296|pid:none) Drosophila melanogaster chromos... 130 1e-28
CP000496_810(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 129 2e-28
FM992690_580(FM992690|pid:none) Candida dubliniensis CD36 chromo... 129 3e-28
CU928180_627(CU928180|pid:none) Kluyveromyces thermotolerans str... 127 9e-28
BX649606_44(BX649606|pid:none) Aspergillus fumigatus BAC pilot p... 127 1e-27
AL713629_19(AL713629|pid:none) Aspergillus fumigatus BAC AFA5C11. 127 1e-27
U64598_15(U64598|pid:none) Caenorhabditis elegans cosmid C52B9, ... 125 3e-27
AY095050_1(AY095050|pid:none) Drosophila melanogaster LD39323 fu... 124 6e-27
AY268943_1(AY268943|pid:none) Tetrahymena thermophila strain Cu4... 124 8e-27
AM270168_148(AM270168|pid:none) Aspergillus niger contig An08c01... 124 1e-26
AP003490_13(AP003490|pid:none) Oryza sativa Japonica Group genom... 124 1e-26
CR382126_1059(CR382126|pid:none) Kluyveromyces lactis strain NRR... 122 2e-26
FN392320_922(FN392320|pid:none) Pichia pastoris GS115 chromosome... 122 3e-26
AP007161_494(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 122 4e-26
CR954206_387(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 122 4e-26
AY303939_1(AY303939|pid:none) Pichia angusta global transcriptio... 122 4e-26
AP008215_745(AP008215|pid:none) Oryza sativa (japonica cultivar-... 121 5e-26
AP005419_19(AP005419|pid:none) Oryza sativa Japonica Group genom... 121 5e-26
AF230280_1(AF230280|pid:none) Caenorhabditis elegans SWI2/SNF2-l... 121 6e-26
AB331397_1(AB331397|pid:none) Brassica rapa DDM1b gene for decre... 121 6e-26
FN357499_5(FN357499|pid:none) Schistosoma mansoni genome sequenc... 121 6e-26
X91638_1(X91638|pid:none) G.gallus mRNA for BRM protein. 120 8e-26
AB284258_1(AB284258|pid:none) Brassica rapa DDM1 gene for decrea... 120 8e-26
AL049607_10(AL049607|pid:none) Arabidopsis thaliana DNA chromoso... 120 8e-26
(P32597) RecName: Full=Nuclear protein STH1/NPS1; EC=3.... 120 8e-26
CR954201_555(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 120 1e-25
BC016071_1(BC016071|pid:none) Mus musculus SWI/SNF related, matr... 120 1e-25
AY205256_1(AY205256|pid:none) Danio rerio brahma protein-like pr... 120 1e-25
(Q6PGB8) RecName: Full=Probable global transcription activator S... 120 1e-25
BC168798_1(BC168798|pid:none) Xenopus tropicalis cDNA clone MGC:... 120 1e-25
AF325920_1(AF325920|pid:none) Mus musculus DNA-dependent ATPase ... 120 1e-25
(Q3B7N1) RecName: Full=Chromodomain-helicase-DNA-binding protein... 120 1e-25
AP007150_191(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 119 2e-25
CR382131_364(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 119 2e-25
AP007150_188(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 119 2e-25
DQ059482_1(DQ059482|pid:none) Homo sapiens ciprofibrate bound pr... 119 2e-25
(A2R9H9) RecName: Full=Putative DNA helicase ino80; EC=... 119 2e-25
EU430758_1(EU430758|pid:none) Homo sapiens SMARCA4 isoform 4 mRN... 118 4e-25
AB209313_1(AB209313|pid:none) Homo sapiens mRNA for SWI/SNF-rela... 118 4e-25
EU430756_1(EU430756|pid:none) Homo sapiens SMARCA4 isoform 3 mRN... 118 4e-25
AF254822_1(AF254822|pid:none) Homo sapiens SMARCA4 isoform (SMAR... 118 4e-25
AC012647_4(AC012647|pid:none) Trypanosoma brucei chromosome 2 cl... 118 4e-25
BC077794_1(BC077794|pid:none) Xenopus laevis helicase, lymphoid-... 118 4e-25
BC136644_1(BC136644|pid:none) Homo sapiens SWI/SNF related, matr... 118 4e-25
I53078(I53078) homeotic gene regulator - mouse (fragment) &S681... 118 4e-25
AK160825_1(AK160825|pid:none) Mus musculus 10 days embryo whole ... 118 4e-25
AB018119_14(AB018119|pid:none) Arabidopsis thaliana genomic DNA,... 118 4e-25
EU430757_1(EU430757|pid:none) Homo sapiens SMARCA4 isoform 2 mRN... 118 4e-25
AY699010_1(AY699010|pid:none) Arabidopsis thaliana SWI2/SNF2-lik... 118 4e-25
AY699011_1(AY699011|pid:none) Arabidopsis thaliana SWI2/SNF2-lik... 118 4e-25
BC060229_1(BC060229|pid:none) Mus musculus SWI/SNF related, matr... 118 4e-25
D26156_1(D26156|pid:none) Homo sapiens mRNA for transcriptional ... 118 4e-25
(P51532) RecName: Full=Probable global transcription activator S... 118 4e-25
BC153216_1(BC153216|pid:none) Bos taurus SWI/SNF related, matrix... 118 4e-25
AJ504723_1(AJ504723|pid:none) Rattus norvegicus partial mRNA for... 118 4e-25
AK166837_1(AK166837|pid:none) Mus musculus blastocyst blastocyst... 118 4e-25
BC151849_1(BC151849|pid:none) Synthetic construct Homo sapiens c... 118 4e-25
CP001323_433(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 118 5e-25
(A1C9W6) RecName: Full=Putative DNA helicase ino80; EC=... 118 5e-25
(A1CZE5) RecName: Full=Putative DNA helicase ino80; EC=... 118 5e-25
AM269978_13(AM269978|pid:none) Aspergillus niger contig An01c031... 118 5e-25
BC075641_1(BC075641|pid:none) Mus musculus SWI/SNF related, matr... 118 5e-25
BC056199_1(BC056199|pid:none) Mus musculus SWI/SNF related, matr... 118 5e-25
CU633455_71(CU633455|pid:none) Podospora anserina genomic DNA ch... 117 7e-25
BC143954_1(BC143954|pid:none) Homo sapiens SWI/SNF related, matr... 117 7e-25
(P28370) RecName: Full=Probable global transcription activator S... 117 7e-25
AC146936_20(AC146936|pid:none) Oryza sativa (japonica cultivar-g... 117 7e-25
AK296373_1(AK296373|pid:none) Homo sapiens cDNA FLJ61591 partial... 117 7e-25
AL022577_2(AL022577|pid:none) Human DNA sequence from clone RP3-... 117 7e-25
BC142521_1(BC142521|pid:none) Bos taurus SWI/SNF related, matrix... 117 7e-25
AL022577_4(AL022577|pid:none) Human DNA sequence from clone RP3-... 117 7e-25
D26155_1(D26155|pid:none) Homo sapiens mRNA for transcriptional ... 117 7e-25
AL138755_5(AL138755|pid:none) Human DNA sequence from clone RP11... 117 7e-25
M89907_1(M89907|pid:none) Human global transcription activator h... 117 7e-25
BX538033_1(BX538033|pid:none) Homo sapiens mRNA; cDNA DKFZp686J0... 117 9e-25
(Q76H81) RecName: Full=Lymphoid-specific helicase; EC=3... 117 9e-25
AB113249_1(AB113249|pid:none) Homo sapiens HELLS mRNA for lympho... 117 9e-25
AB102723_1(AB102723|pid:none) Homo sapiens HELLS mRNA for lympho... 117 9e-25
AE014185_229(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 117 1e-24
CR382131_97(CR382131|pid:none) Yarrowia lipolytica strain CLIB12... 117 1e-24
CU928171_378(CU928171|pid:none) Kluyveromyces thermotolerans str... 117 1e-24
AM910988_83(AM910988|pid:none) Plasmodium knowlesi strain H chro... 116 2e-24
AY333120_1(AY333120|pid:none) Arabidopsis arenosa Swi2/Snf2-rela... 116 2e-24
AX356104_1(AX356104|pid:none) Sequence 1 from Patent WO0190320. 116 2e-24
(Q7ZU90) RecName: Full=Chromodomain-helicase-DNA-binding protein... 116 2e-24
AJ719817_1(AJ719817|pid:none) Gallus gallus mRNA for hypothetica... 116 2e-24
(Q4PGL2) RecName: Full=Putative DNA helicase INO80; EC=... 116 2e-24
AE016818_715(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 115 3e-24
CR380953_373(CR380953|pid:none) Candida glabrata strain CBS138 c... 115 3e-24
AE017351_304(AE017351|pid:none) Cryptococcus neoformans var. neo... 115 3e-24
CR954207_416(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 115 3e-24
(Q5BAZ5) RecName: Full=Putative DNA helicase ino80; EC=... 115 3e-24
AF461813_1(AF461813|pid:none) Zea mays chromatin complex subunit... 115 3e-24
BC080870_1(BC080870|pid:none) Xenopus tropicalis SWI/SNF related... 115 4e-24
CR382126_197(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 115 4e-24
(Q9UTN6) RecName: Full=Chromatin structure-remodeling complex su... 115 4e-24
(P38144) RecName: Full=ISWI chromatin-remodeling complex ATPase ... 115 5e-24
S46122(S46122)SNF2 protein homolog YBR245c - yeast (Saccharomyce... 115 5e-24
AY643746_1(AY643746|pid:none) Rattus norvegicus SWI/SNF-related ... 115 5e-24
CU633872_184(CU633872|pid:none) Podospora anserina genomic DNA c... 115 5e-24
(P22082) RecName: Full=Transcription regulatory protein SNF2; ... 114 6e-24
AL928727_1(AL928727|pid:none) Zebrafish DNA sequence from clone ... 114 6e-24
AY612850_1(AY612850|pid:none) Danio rerio PASG mRNA, complete cds. 114 6e-24
AL935288_3(AL935288|pid:none) Zebrafish DNA sequence from clone ... 114 6e-24
AE016819_795(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 114 6e-24
BC124094_1(BC124094|pid:none) Danio rerio helicase, lymphoid-spe... 114 6e-24
CR382139_133(CR382139|pid:none) Debaryomyces hansenii strain CBS... 114 6e-24
AM920427_717(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 114 8e-24
BC100394_1(BC100394|pid:none) Mus musculus helicase, lymphoid sp... 114 8e-24
AK013266_1(AK013266|pid:none) Mus musculus 10, 11 days embryo wh... 114 8e-24
S44645(S44645;T16288)hypothetical protein F37A4.8 - Caenorhabdit... 114 1e-23
AC011806_3(AC011806|pid:none) Genomic Sequence For Oryza sativa ... 114 1e-23
FM992689_189(FM992689|pid:none) Candida dubliniensis CD36 chromo... 114 1e-23
(Q91ZW3) RecName: Full=SWI/SNF-related matrix-associated actin-d... 113 1e-23
CU928173_103(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 113 1e-23
BC073289_1(BC073289|pid:none) Xenopus laevis MGC80667 protein, m... 113 2e-23
CR848717_1(CR848717|pid:none) Zebrafish DNA sequence from clone ... 113 2e-23
AY927849_1(AY927849|pid:none) Arabidopsis thaliana SPLAYED splic... 113 2e-23
CP001142_300(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 112 2e-23
(A7EQA8) RecName: Full=Putative DNA helicase INO80; EC=... 112 2e-23
FN392319_386(FN392319|pid:none) Pichia pastoris GS115 chromosome... 112 2e-23
BX470255_2(BX470255|pid:none) Zebrafish DNA sequence from clone ... 112 2e-23
FN392322_123(FN392322|pid:none) Pichia pastoris GS115 chromosome... 112 2e-23
(Q8RWY3) RecName: Full=Putative chromatin-remodeling complex ATP... 112 2e-23
AY091030_1(AY091030|pid:none) Arabidopsis thaliana putative ATPa... 112 2e-23
BC133097_1(BC133097|pid:none) Danio rerio SWI/SNF related, matri... 112 2e-23
AF292095_1(AF292095|pid:none) Xenopus laevis imitation switch IS... 112 3e-23
AK316444_1(AK316444|pid:none) Homo sapiens cDNA, FLJ79343 comple... 112 3e-23
AE016819_194(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 112 3e-23
BC153225_1(BC153225|pid:none) Bos taurus SWI/SNF related, matrix... 112 3e-23
(Q74Z27) RecName: Full=Putative DNA helicase INO80; EC=... 112 3e-23
CP000496_494(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 112 3e-23
AY069786_1(AY069786|pid:none) Drosophila melanogaster SD02886 fu... 112 4e-23
CR382125_177(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 112 4e-23
AB210714_1(AB210714|pid:none) Ciona intestinalis Ci-SWI/SNF mRNA... 112 4e-23
(Q9VDY1) RecName: Full=Putative DNA helicase Ino80; Sho... 112 4e-23
CP000581_576(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 111 5e-23
AK048742_1(AK048742|pid:none) Mus musculus 0 day neonate cerebel... 111 5e-23
(O14148) RecName: Full=Putative DNA helicase ino80; EC=... 111 5e-23
CP000498_251(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 111 5e-23
CU928180_235(CU928180|pid:none) Kluyveromyces thermotolerans str... 111 5e-23
AY268945_1(AY268945|pid:none) Tetrahymena thermophila strain Cu4... 111 5e-23
BC057567_1(BC057567|pid:none) Mus musculus chromodomain helicase... 111 5e-23
T38732(T38732) probable helicase - fission yeast (Schizosaccharo... 111 5e-23
(O94421) RecName: Full=SWI/SNF chromatin-remodeling complex subu... 111 7e-23
AF325921_1(AF325921|pid:none) Mus musculus DNA-dependent ATPase ... 111 7e-23
AL109850_1(AL109850|pid:none) S.pombe chromosome III cosmid c830. 111 7e-23
AX876540_1(AX876540|pid:none) Sequence 11445 from Patent EP10746... 111 7e-23
BT067025_1(BT067025|pid:none) Zea mays full-length cDNA clone ZM... 111 7e-23
AK001342_1(AK001342|pid:none) Homo sapiens cDNA FLJ10480 fis, cl... 111 7e-23
BC005038_1(BC005038|pid:none) Homo sapiens chromodomain helicase... 111 7e-23
EF560738_1(EF560738|pid:none) Homo sapiens clone DKFZp686J1099 C... 111 7e-23
CR954217_197(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 111 7e-23
AL356378_7(AL356378|pid:none) Human DNA sequence from clone RP11... 111 7e-23
(P53115) RecName: Full=Putative DNA helicase INO80; EC=... 110 9e-23
AM270388_18(AM270388|pid:none) Aspergillus niger contig An17c006... 110 1e-22
AM920436_1738(AM920436|pid:none) Penicillium chrysogenum Wiscons... 110 1e-22
CU928176_687(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 110 1e-22
CR382126_291(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 110 1e-22
(Q6BGY8) RecName: Full=Putative DNA helicase INO80; EC=... 110 1e-22
FN357305_17(FN357305|pid:none) Schistosoma mansoni genome sequen... 109 2e-22
FM992695_429(FM992695|pid:none) Candida dubliniensis CD36 chromo... 109 2e-22
AJ851608_1(AJ851608|pid:none) Gallus gallus partial mRNA for hyp... 109 2e-22
CU928165_133(CU928165|pid:none) Kluyveromyces thermotolerans str... 109 2e-22
(A7TJI3) RecName: Full=Putative DNA helicase INO80; EC=... 109 3e-22
(Q6BKC2) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 109 3e-22
CR380949_58(CR380949|pid:none) Candida glabrata strain CBS138 ch... 109 3e-22
S39059(S39059)protein BRG1 - human 108 3e-22
(Q6EVK6) RecName: Full=ATP-dependent helicase BRM; Shor... 108 4e-22
CU928179_909(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 108 6e-22
FN392320_1198(FN392320|pid:none) Pichia pastoris GS115 chromosom... 108 6e-22
CR382133_515(CR382133|pid:none) Debaryomyces hansenii strain CBS... 108 6e-22
(Q4IL82) RecName: Full=Putative DNA helicase INO80; EC=... 107 7e-22
AM920437_355(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 107 7e-22
(Q5KHM0) RecName: Full=Putative DNA helicase INO80; EC=... 107 7e-22
FM992690_238(FM992690|pid:none) Candida dubliniensis CD36 chromo... 107 7e-22
BC059235_1(BC059235|pid:none) Mus musculus INO80 complex homolog... 107 1e-21
AB033085_1(AB033085|pid:none) Homo sapiens mRNA for KIAA1259 pro... 107 1e-21
(Q9ULG1) RecName: Full=Putative DNA helicase INO80 complex homol... 107 1e-21
AL844862_2(AL844862|pid:none) Mouse DNA sequence from clone RP23... 107 1e-21
AE017351_199(AE017351|pid:none) Cryptococcus neoformans var. neo... 107 1e-21
(P43610) RecName: Full=Uncharacterized ATP-dependent helicase YF... 107 1e-21
(Q872I5) RecName: Full=Putative DNA helicase ino-80; EC... 107 1e-21
AE016817_302(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 107 1e-21
AL137080_15(AL137080|pid:none) Arabidopsis thaliana DNA chromoso... 106 2e-21
(Q8RXS6) RecName: Full=DNA helicase INO80 complex homolog 1; ... 106 2e-21
(Q0UG82) RecName: Full=Putative DNA helicase INO80; EC=... 106 2e-21
BC089242_1(BC089242|pid:none) Xenopus tropicalis SWI/SNF-related... 106 2e-21
AM468251_5(AM468251|pid:none) Vitis vinifera contig VV78X201737.... 105 3e-21
FN357312_11(FN357312|pid:none) Schistosoma mansoni genome sequen... 105 3e-21
FN357312_10(FN357312|pid:none) Schistosoma mansoni genome sequen... 105 3e-21
AP003227_41(AP003227|pid:none) Oryza sativa Japonica Group genom... 105 3e-21
CP000502_77(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso... 105 3e-21
AL929049_3(AL929049|pid:none) Zebrafish DNA sequence from clone ... 105 4e-21
FM992690_120(FM992690|pid:none) Candida dubliniensis CD36 chromo... 105 5e-21
AK129317_1(AK129317|pid:none) Mus musculus premature mRNA for mK... 104 6e-21
CP000500_641(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 103 1e-20
FM992689_685(FM992689|pid:none) Candida dubliniensis CD36 chromo... 103 2e-20
CR940352_114(CR940352|pid:none) Theileria annulata strain Ankara... 103 2e-20
EU730901_22(EU730901|pid:none) Brachypodium distachyon clone BAC... 102 2e-20
CP001334_203(CP001334|pid:none) Micromonas sp. RCC299 chromosome... 102 2e-20
FJ427399_1(FJ427399|pid:none) Triticum turgidum clone BAC 738D05... 102 3e-20
CR954207_378(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 102 3e-20
AY485643_5(AY485643|pid:none) Hordeum vulgare subsp. vulgare BAC... 102 4e-20
AM920436_1170(AM920436|pid:none) Penicillium chrysogenum Wiscons... 101 5e-20
(Q59U81) RecName: Full=Helicase SWR1; EC=3.6.1.-; 101 5e-20
EF540321_7(EF540321|pid:none) Triticum turgidum overlapping clon... 101 7e-20
AY485644_6(AY485644|pid:none) Triticum monococcum phosphatidylse... 101 7e-20
(Q5ARK3) RecName: Full=Helicase swr1; EC=3.6.1.-; 101 7e-20
AY279398_1(AY279398|pid:none) Arabidopsis thaliana photoperiod i... 101 7e-20
AM270258_21(AM270258|pid:none) Aspergillus niger contig An12c001... 100 9e-20
(Q4WAS9) RecName: Full=Helicase swr1; EC=3.6.1.-; 100 9e-20
AK299683_1(AK299683|pid:none) Homo sapiens cDNA FLJ53181 partial... 100 1e-19
CR940347_289(CR940347|pid:none) Theileria annulata strain Ankara... 100 2e-19
CP000582_272(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 100 2e-19
AE001362_151(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 100 2e-19
(Q9P793) RecName: Full=Chromatin remodeling factor mit1; ... 100 2e-19
BC042442_1(BC042442|pid:none) Mus musculus SWI/SNF-related, matr... 99 3e-19
AF459085_1(AF459085|pid:none) Hordeum vulgare SNF2P (Snf2P) gene... 99 3e-19
(Q04692) RecName: Full=SWI/SNF-related matrix-associated actin-d... 99 3e-19
CR940347_357(CR940347|pid:none) Theileria annulata strain Ankara... 99 4e-19
AP004096_24(AP004096|pid:none) Oryza sativa Japonica Group genom... 98 8e-19
(Q4IAK7) RecName: Full=Helicase SWR1; EC=3.6.1.-; 97 1e-18
CR954202_161(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 97 1e-18
(Q05471) RecName: Full=Helicase SWR1; EC=3.6.1.-; AltNa... 96 2e-18
FN392322_137(FN392322|pid:none) Pichia pastoris GS115 chromosome... 96 3e-18
AB102718_1(AB102718|pid:none) Homo sapiens HELLS mRNA for lympho... 96 3e-18
(Q759G7) RecName: Full=Helicase SWR1; EC=3.6.1.-; &AE0... 96 3e-18
BX538352_70(BX538352|pid:none) Cryptosporidium parvum chromosome... 96 3e-18
(Q9H4L7) RecName: Full=SWI/SNF-related matrix-associated actin-d... 96 4e-18
AY058653_1(AY058653|pid:none) Drosophila melanogaster LD35434 fu... 96 4e-18
AE013599_3388(AE013599|pid:none) Drosophila melanogaster chromos... 96 4e-18
AK301668_1(AK301668|pid:none) Homo sapiens cDNA FLJ58701 complet... 96 4e-18
AB032948_1(AB032948|pid:none) Homo sapiens mRNA for KIAA1122 pro... 96 4e-18
AF254373_1(AF254373|pid:none) Drosophila melanogaster DOMINO B (... 96 4e-18
BT044534_1(BT044534|pid:none) Drosophila melanogaster LP03212 fu... 96 4e-18
AL359929_1(AL359929|pid:none) Homo sapiens mRNA; cDNA DKFZp762K2... 96 4e-18
AE013599_3390(AE013599|pid:none) Drosophila melanogaster chromos... 96 4e-18
AB385429_1(AB385429|pid:none) Synthetic construct DNA, clone: pF... 96 4e-18
(Q6CJ38) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 95 5e-18
(Q7S133) RecName: Full=Helicase swr-1; EC=3.6.1.-; 95 5e-18
AB169326_1(AB169326|pid:none) Macaca fascicularis testis cDNA, c... 94 8e-18
(Q6FK48) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 94 8e-18
(Q6CA87) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 94 1e-17
AC105379_56(AC105379|pid:none) Trypanosoma brucei chromosome 3 c... 93 2e-17
CT005272_536(CT005272|pid:none) Leishmania major strain Friedlin... 93 2e-17
(Q5K8T2) RecName: Full=Helicase SWR1; EC=3.6.1.-; &AE0... 93 2e-17
AK299761_1(AK299761|pid:none) Homo sapiens cDNA FLJ60344 complet... 93 2e-17
AF143946_1(AF143946|pid:none) Homo sapiens transcriptional activ... 92 4e-17
(Q9NEL2) RecName: Full=Helicase ssl-1; EC=3.6.1.-; AltN... 92 4e-17
(Q6ZRS2) RecName: Full=Helicase SRCAP; EC=3.6.1.-; AltN... 92 4e-17
BC172428_1(BC172428|pid:none) Synthetic construct Homo sapiens c... 92 4e-17
AM910986_40(AM910986|pid:none) Plasmodium knowlesi strain H chro... 92 4e-17
JC4666(JC4666)lymphocyte specific helicase - mouse 92 4e-17
AB384457_1(AB384457|pid:none) Synthetic construct DNA, clone: pF... 92 4e-17
CP001330_7(CP001330|pid:none) Micromonas sp. RCC299 chromosome 1... 92 5e-17
EU057693_1(EU057693|pid:none) Hippoglossus hippoglossus Snf2-rel... 92 5e-17
AM452412_1(AM452412|pid:none) Vitis vinifera contig VV78X221725.... 92 5e-17
CR940347_91(CR940347|pid:none) Theileria annulata strain Ankara ... 92 5e-17
CP000592_288(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 91 7e-17
AL807792_3(AL807792|pid:none) Zebrafish DNA sequence from clone ... 91 9e-17
CP001344_1385(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 91 9e-17
AK303352_1(AK303352|pid:none) Homo sapiens cDNA FLJ60382 complet... 91 1e-16
CT005264_212(CT005264|pid:none) Leishmania major strain Friedlin... 89 3e-16
AB102721_1(AB102721|pid:none) Homo sapiens HELLS mRNA for lympho... 89 4e-16
AB102720_1(AB102720|pid:none) Homo sapiens HELLS mRNA for lympho... 89 4e-16
AL021171_1(AL021171|pid:none) Caenorhabditis elegans Fosmid H04D... 89 4e-16
T23046(T23046;T23695)hypothetical protein M03C11.8 - Caenorhabdi... 89 4e-16
AB102719_1(AB102719|pid:none) Homo sapiens HELLS mRNA for lympho... 88 6e-16
AM910987_113(AM910987|pid:none) Plasmodium knowlesi strain H chr... 87 1e-15
AP007151_1229(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 87 1e-15
AE017126_47(AE017126|pid:none) Prochlorococcus marinus subsp. ma... 87 1e-15
CP001291_3713(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 87 1e-15
AF373872_1(AF373872|pid:none) Xenopus laevis BRG1 protein (BRG1)... 87 1e-15
CR954212_281(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 87 2e-15
AM494962_161(AM494962|pid:none) Leishmania braziliensis chromoso... 86 2e-15
AE006641_1514(AE006641|pid:none) Sulfolobus solfataricus P2, com... 86 2e-15
BA000045_2266(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 86 4e-15
FN357294_49(FN357294|pid:none) Schistosoma mansoni genome sequen... 86 4e-15
AY812809_1(AY812809|pid:none) Schistosoma japonicum SJCHGC07388 ... 85 7e-15
(O42861) RecName: Full=Uncharacterized ATP-dependent helicase C2... 85 7e-15
AP007159_634(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 84 9e-15
AP004126_9(AP004126|pid:none) Oryza sativa Japonica Group genomi... 84 1e-14
AC005936_13(AC005936|pid:none) Arabidopsis thaliana chromosome 2... 84 1e-14
AE016877_4999(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 84 1e-14
CR382135_682(CR382135|pid:none) Debaryomyces hansenii strain CBS... 84 1e-14
(O13682) RecName: Full=Helicase swr1; EC=3.6.1.-; &CU3... 84 1e-14
CP000878_51(CP000878|pid:none) Prochlorococcus marinus str. MIT ... 84 1e-14
AL606628_18(AL606628|pid:none) Oryza sativa genomic DNA, chromos... 84 1e-14
CP001407_5159(CP001407|pid:none) Bacillus cereus 03BB102, comple... 83 2e-14
CU633900_1017(CU633900|pid:none) Podospora anserina genomic DNA ... 83 2e-14
BC139113_1(BC139113|pid:none) Mus musculus predicted gene, OTTMU... 83 3e-14
CR382125_983(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 83 3e-14
AE014134_1792(AE014134|pid:none) Drosophila melanogaster chromos... 83 3e-14
AE016879_5077(AE016879|pid:none) Bacillus anthracis str. Ames, c... 82 3e-14
CP000591_41(CP000591|pid:none) Ostreococcus lucimarinus CCE9901 ... 82 3e-14
AF059276_1(AF059276|pid:none) Struthio camelus chromo-helicase-D... 82 3e-14
CP000227_4946(CP000227|pid:none) Bacillus cereus Q1, complete ge... 82 3e-14
AE016816_490(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 82 4e-14
CR380955_66(CR380955|pid:none) Candida glabrata strain CBS138 ch... 82 4e-14
AE014299_1619(AE014299|pid:none) Shewanella oneidensis MR-1, com... 82 4e-14
CR762493_3(CR762493|pid:none) Zebrafish DNA sequence from clone ... 82 6e-14
CU928180_591(CU928180|pid:none) Kluyveromyces thermotolerans str... 82 6e-14
AE017333_3682(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 81 7e-14
AK066228_1(AK066228|pid:none) Oryza sativa Japonica Group cDNA c... 81 7e-14
AE017348_138(AE017348|pid:none) Cryptococcus neoformans var. neo... 81 7e-14
CR382126_326(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 81 7e-14
AP006618_1038(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 81 7e-14
CP000949_1662(CP000949|pid:none) Pseudomonas putida W619, comple... 81 1e-13
CP000485_4506(CP000485|pid:none) Bacillus thuringiensis str. Al ... 81 1e-13
CP000113_5215(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 80 1e-13
BX569695_171(BX569695|pid:none) Synechococcus sp. WH8102 complet... 80 1e-13
CR382132_1194(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 80 1e-13
AP009552_236(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 80 2e-13
CP000438_4328(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 80 2e-13
AM920435_725(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 80 2e-13
CU928176_224(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 80 2e-13
CP000254_1803(CP000254|pid:none) Methanospirillum hungatei JF-1,... 80 2e-13
FN392320_1272(FN392320|pid:none) Pichia pastoris GS115 chromosom... 80 2e-13
BX294010_4(BX294010|pid:none) Neurospora crassa DNA linkage grou... 80 2e-13
CP000497_623(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 80 2e-13
AM180355_2250(AM180355|pid:none) Clostridium difficile 630 compl... 80 2e-13
CR954202_487(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 79 3e-13
CP000712_3543(CP000712|pid:none) Pseudomonas putida F1, complete... 79 3e-13
GN099095_1(GN099095|pid:none) Sequence 3876 from Patent WO200903... 79 3e-13
AE016818_282(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 79 3e-13
AP006840_657(AP006840|pid:none) Symbiobacterium thermophilum IAM... 79 4e-13
CP001287_283(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 79 4e-13
CP000926_1674(CP000926|pid:none) Pseudomonas putida GB-1, comple... 79 4e-13
AF217319_1(AF217319|pid:none) Mus musculus putative repair and r... 79 5e-13
CP000446_2609(CP000446|pid:none) Shewanella sp. MR-4, complete g... 79 5e-13
CR857590_1(CR857590|pid:none) Pongo abelii mRNA; cDNA DKFZp459M1... 79 5e-13
BC167234_1(BC167234|pid:none) Synthetic construct Mus musculus c... 79 5e-13
CP000891_1493(CP000891|pid:none) Shewanella baltica OS195, compl... 78 6e-13
CR931997_1362(CR931997|pid:none) Corynebacterium jeikeium K411 c... 78 6e-13
CP000563_1452(CP000563|pid:none) Shewanella baltica OS155, compl... 78 6e-13
CP000435_2719(CP000435|pid:none) Synechococcus sp. CC9311, compl... 78 6e-13
CP000744_4665(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 78 6e-13
AL132957_24(AL132957|pid:none) Arabidopsis thaliana DNA chromoso... 78 8e-13
CP000444_2666(CP000444|pid:none) Shewanella sp. MR-7, complete g... 78 8e-13
CP000492_1191(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 78 8e-13
(Q03468) RecName: Full=DNA excision repair protein ERCC-6; ... 78 8e-13
CP000926_4723(CP000926|pid:none) Pseudomonas putida GB-1, comple... 78 8e-13
(Q9UR24) RecName: Full=DNA repair protein rhp26; AltName: Full=R... 78 8e-13
AL009126_3749(AL009126|pid:none) Bacillus subtilis subsp. subtil... 78 8e-13
AM502232_88(AM502232|pid:none) Leishmania infantum chromosome 14. 78 8e-13
AP007171_293(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 77 1e-12
EU247219_1(EU247219|pid:none) Lycosa singoriensis clone LSsin187... 77 1e-12
CP000117_3259(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 77 1e-12
CP000554_2812(CP000554|pid:none) Prochlorococcus marinus str. MI... 77 1e-12
BX548175_2777(BX548175|pid:none) Prochlorococcus marinus MIT9313... 77 1e-12
AM999887_318(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 77 1e-12
CP000681_1360(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 77 2e-12
CT005253_88(CT005253|pid:none) Leishmania major strain Friedlin,... 76 2e-12
CP001601_1029(CP001601|pid:none) Corynebacterium aurimucosum ATC... 75 4e-12
CR380954_234(CR380954|pid:none) Candida glabrata strain CBS138 c... 75 4e-12
AE016817_55(AE016817|pid:none) Ashbya gossypii (= Eremothecium g... 75 4e-12
CP000806_1351(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 75 4e-12
CP000089_3839(CP000089|pid:none) Dechloromonas aromatica RCB, co... 75 4e-12
CP000943_867(CP000943|pid:none) Methylobacterium sp. 4-46, compl... 75 4e-12
AP008231_666(AP008231|pid:none) Synechococcus elongatus PCC 6301... 75 5e-12
CP001326_138(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 75 5e-12
AE000516_2223(AE000516|pid:none) Mycobacterium tuberculosis CDC1... 75 5e-12
AE017354_716(AE017354|pid:none) Legionella pneumophila subsp. pn... 75 5e-12
CP000717_2129(CP000717|pid:none) Mycobacterium tuberculosis F11,... 75 5e-12
AP009389_410(AP009389|pid:none) Pelotomaculum thermopropionicum ... 75 7e-12
FN357508_4(FN357508|pid:none) Schistosoma mansoni genome sequenc... 75 7e-12
FM992695_700(FM992695|pid:none) Candida dubliniensis CD36 chromo... 75 7e-12
CP001114_978(CP001114|pid:none) Deinococcus deserti VCD115, comp... 75 7e-12
CP001110_51(CP001110|pid:none) Pelodictyon phaeoclathratiforme B... 74 9e-12
AM420293_1574(AM420293|pid:none) Saccharopolyspora erythraea NRR... 74 9e-12
AP009152_1813(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 74 9e-12
CP000680_3217(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 74 9e-12
CP000058_1768(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 74 9e-12
AM181176_1524(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 74 9e-12
CP000249_2380(CP000249|pid:none) Frankia sp. CcI3, complete geno... 74 1e-11
AE016853_2062(AE016853|pid:none) Pseudomonas syringae pv. tomato... 74 1e-11
AF474993_1(AF474993|pid:none) Exophiala dermatitidis putative tr... 74 2e-11
CP000617_271(CP000617|pid:none) Burkholderia vietnamiensis G4 pl... 74 2e-11
CP000585_159(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 74 2e-11
CU928169_543(CU928169|pid:none) Kluyveromyces thermotolerans str... 74 2e-11
AP008957_2001(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 73 2e-11
CP000454_3772(CP000454|pid:none) Arthrobacter sp. FB24, complete... 73 2e-11
CP000094_3863(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 73 2e-11
AL451013_12(AL451013|pid:none) Neurospora crassa DNA linkage gro... 73 3e-11
AB168179_1(AB168179|pid:none) Macaca fascicularis testis cDNA cl... 73 3e-11
(Q9Y620) RecName: Full=DNA repair and recombination protein RAD5... 73 3e-11
CP000246_1119(CP000246|pid:none) Clostridium perfringens ATCC 13... 72 3e-11
CR382122_372(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 72 3e-11
CP000302_2211(CP000302|pid:none) Shewanella denitrificans OS217,... 72 3e-11
AM180252_168(AM180252|pid:none) Lawsonia intracellularis PHE/MN1... 72 3e-11
CP000312_958(CP000312|pid:none) Clostridium perfringens SM101, c... 72 3e-11
AP007150_297(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 72 3e-11
FJ168468_1(FJ168468|pid:none) Arabidopsis thaliana brahma varian... 72 4e-11
CP000510_113(CP000510|pid:none) Psychromonas ingrahamii 37, comp... 72 4e-11
AE010299_188(AE010299|pid:none) Methanosarcina acetivorans str. ... 72 6e-11
CP000447_1290(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 72 6e-11
AP008957_4070(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 71 8e-11
(A6QQR4) RecName: Full=DNA excision repair protein ERCC-6-like; ... 71 8e-11
FN392319_1509(FN392319|pid:none) Pichia pastoris GS115 chromosom... 71 8e-11

>AE014134_63(AE014134|pid:none) Drosophila melanogaster chromosome 2L,
complete sequence.
Length = 5517

Score = 240 bits (613), Expect = 7e-62
Identities = 115/226 (50%), Positives = 155/226 (68%)
Frame = +2

Query: 29 KQYLIKWKSISYSLSTWEYQDDFKDDLKIEQYYKLNEMPSKEELRDKPRPPRTAWKKIDQ 208
K YL+KWKS+ Y TWE ++D +D KIEQY + N++P + E + K RP WKK+++
Sbjct: 1961 KHYLVKWKSLPYEDCTWELEEDVDND-KIEQYLRFNKIPQRSEWKSKKRPHPELWKKLEK 2019

Query: 209 SPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILETLRKVHGIR 388
+P Y GN LRPYQLEGLNWL F W+ N IL DEMGLGKT+QS++ + ++ + +GIR
Sbjct: 2020 TPVY-KGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYE-YGIR 2077

Query: 389 GPFLVVAPLTTIPHWKREFENWTDMNALVYHDSGAGRPICRNYEFYLKDKDXXXXXXXXX 568
GPFLV+APL+TIP+W+REFE WTDMN +VYH S + + ++YE+Y K +
Sbjct: 2078 GPFLVIAPLSTIPNWQREFEGWTDMNVVVYHGSVTSKQMIQDYEYYYKTES-------GK 2130

Query: 569 XXXKITKFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSC 706
+ KFNVLITT+EM +TD L W+ VIDEAHRLKN++C
Sbjct: 2131 VLKEPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNC 2176

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,631,634,964
Number of extensions: 30404170
Number of successful extensions: 74617
Number of sequences better than 10.0: 1100
Number of HSP's gapped: 73372
Number of HSP's successfully gapped: 1221
Length of query: 445
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 313
Effective length of database: 618,001,159
Effective search space: 193434362767
Effective search space used: 193434362767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.61 gvh: 0.26 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U11109-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0