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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U01729-1
Contig ID Contig-U01729-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01729-1 (Contig-U01729-1Q) /CSM_Contig/Contig-U01729-1Q.Seq.d
AATATATACATAATGAATAATAACAACAACAGAAATAAATATTTATCTTC
TTCTAAAAAAAAAAATTGTCATAAAAAATAAAAAAAATAAAAAACATTTA
AATATCAATAGAATTTATAATACCAACTATTACAAAAATAATAATAATAA
AAATAATAACAA----------TAATAACAATAATATGAAATTAAATAAT
AACATCAACAATAATAATAATAATAACAACAACATTAGCTCAATTACTAT
TAACAATTACAGTTCTCCTTCTGTTGTAGGCCATTCTCTCTCAAGTGCTG
CCATGGTTCCTGATATGATGGAGTACAACTCTGATGCTTTCTCTTGCCCA
AATGCTCCAACCAATTATACCTCTTATTTAATTGGTTTATACCACCATAC
CTTGGATGAAGAGTACTCTTCCATGTTGCTAAATTATGACGAAAATGTTG
GCCATCTCAATAACTATGGCTCAATGTTTGAATTAATGAAAGGTAGTGAC
AACAATAGTATTCCTTCATCCCCTTCCTCTGCCTTGGTTTCCCTTTGTTC
AAGTTCCCAAACTGTACCATCTTTATAAGTTAATTTATTATATTTATTCA
TATAAACACCATATACATATATATATATCGACATTTTTTCGATTTCTCAA
TATTCAAAACATTTTATGTTGCGGTGGTGGAATAATTGGTATATAAACCG
ACAAAAAAAAAGAAAAAAAAAAAAATCGAAATCTCGATTCAAAACCTTCA
AGTTATTTTTTTTTTAGTTTTTTAATTTTTTCAATAGGATTGTTGAAAGA
AAAAAACTATTATTTGTACATAGTATCAAAAAAAAAGAAAAGAAAAAAAA
AAAAAAAAAAAATAATA
Gap gap included
Contig length 857
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5985968
End point 5985110
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U01729
List of clone(s) 

est1=SSF783F,1,163
est2=SSI143Z,164,695
est3=SSF783Z,196,859
Translated Amino Acid sequence 
iyt**IITTTEINIYLLLKKKIVIKNKKNKKHLNINRIYNTNYYKNNNNKNNN---

---NNNNMKLNNNINNNNNNNNNISSITINNYSSPSVVGHSLSSAAMVPDMMEYNSDAFS
CPNAPTNYTSYLIGLYHHTLDEEYSSMLLNYDENVGHLNNYGSMFELMKGSDNNSIPSSP
SSALVSLCSSSQTVPSL*vnllylfi*tpytyiyidifsisqyskhfmlrwwnnwyinrq
kkrkkkksksrfktfklfff*ffnffnriverkkllfvhsikkkekkkkkkknn
Translated Amino Acid sequence (All Frames) 
Frame A:
niyimnnnnnrnkylssskkknchkk*kk*ktfkyq*nl*yqllqk****k**q---

---**q*yeik**hqq*****qqh*lnyy*qlqfsfccrpfslkcchgs*ydgvql*cfl
lpkcsnqlyllfnwfippylg*rvlfhvakl*rkcwpsq*lwlnv*iner**qq*ysfip
flclgfplfkfpnctifis*fiifihintiyiyiyrhffdfsifktfyvavve*lvykpt
kkkkkkkieisiqnlqvifflvf*ffq*dc*kkktiict*yqkkrkekkkkkk*

Frame B:
iyt**IITTTEINIYLLLKKKIVIKNKKNKKHLNINRIYNTNYYKNNNNKNNN---

---NNNNMKLNNNINNNNNNNNNISSITINNYSSPSVVGHSLSSAAMVPDMMEYNSDAFS
CPNAPTNYTSYLIGLYHHTLDEEYSSMLLNYDENVGHLNNYGSMFELMKGSDNNSIPSSP
SSALVSLCSSSQTVPSL*vnllylfi*tpytyiyidifsisqyskhfmlrwwnnwyinrq
kkrkkkksksrfktfklfff*ffnffnriverkkllfvhsikkkekkkkkkknn

Frame C:
yihne**qqqk*ififf*kkkls*kikkikni*isiefiiptitkiiiikiit---

---itii*n*iitstiiiiitttlaqllltitvllll*ailsqvlpwfli*wsttlmlsl
aqmlqpiipli*lvyttipwmkstlpcc*imtkmlaisitmaqcln**kvvttivflhpl
plpwfpfvqvpklyhlykliyyiysykhhihiyistffrflniqnilccgggiigi*tdk
kkekkknrnldskpssyfffsflifsigllkeknyylyivskkkkrkkkkkkii
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01729-1 (Contig-U01729-1Q)
/CSM_Contig/Contig-U01729-1Q.Seq.d
         (867 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01729-1 (Contig-U01729-1Q) /CSM_Contig/Conti...   674  0.0
Contig-U11096-1 (Contig-U11096-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U01312-1 (Contig-U01312-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U12493-1 (Contig-U12493-1Q) /CSM_Contig/Conti...    34  0.34
Contig-U12367-1 (Contig-U12367-1Q) /CSM_Contig/Conti...    34  0.34
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    34  0.34
Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Conti...    34  0.34
Contig-U09220-1 (Contig-U09220-1Q) /CSM_Contig/Conti...    34  0.34
Contig-U06635-1 (Contig-U06635-1Q) /CSM_Contig/Conti...    34  0.34
Contig-U02322-1 (Contig-U02322-1Q) /CSM_Contig/Conti...    34  0.34

>Contig-U01729-1 (Contig-U01729-1Q) /CSM_Contig/Contig-U01729-1Q.Seq.d
          Length = 867

 Score =  674 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Plus

                                                                       
Query: 234 attagctcaattactattaacaattacagttctccttctgttgtaggccattctctctca 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 attagctcaattactattaacaattacagttctccttctgttgtaggccattctctctca 293

                                                                       
Query: 294 agtgctgccatggttcctgatatgatggagtacaactctgatgctttctcttgcccaaat 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agtgctgccatggttcctgatatgatggagtacaactctgatgctttctcttgcccaaat 353

                                                                       
Query: 354 gctccaaccaattatacctcttatttaattggtttataccaccataccttggatgaagag 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gctccaaccaattatacctcttatttaattggtttataccaccataccttggatgaagag 413

                                                                       
Query: 414 tactcttccatgttgctaaattatgacgaaaatgttggccatctcaataactatggctca 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tactcttccatgttgctaaattatgacgaaaatgttggccatctcaataactatggctca 473

                                                                       
Query: 474 atgtttgaattaatgaaaggtagtgacaacaatagtattccttcatccccttcctctgcc 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atgtttgaattaatgaaaggtagtgacaacaatagtattccttcatccccttcctctgcc 533

                                                   
Query: 534 ttggtttccctttgttcaagttcccaaactgtaccatctt 573
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttggtttccctttgttcaagttcccaaactgtaccatctt 573


 Score =  147 bits (74), Expect = 3e-35
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                       
Query: 629 cgacattttttcgatttctcaatattcaaaacattttatgttgcggtggtggaataattg 688
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cgacattttttcgatttctcaatattcaaaacattttatgttgcggtggtggaataattg 688

                         
Query: 689 gtatataaaccgac 702
           ||||||||||||||
Sbjct: 689 gtatataaaccgac 702


 Score =  107 bits (54), Expect = 3e-23
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                
Query: 1  aatatatacataatgaataataacaacaacagaaataaatatttatcttcttct 54
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aatatatacataatgaataataacaacaacagaaataaatatttatcttcttct 54


 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 782 caataggattgttgaaagaaaaaaactattatttgtacatagtatc 827
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 caataggattgttgaaagaaaaaaactattatttgtacatagtatc 827


 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 726 tcgaaatctcgattcaaaaccttcaagtta 755
           ||||||||||||||||||||||||||||||
Sbjct: 726 tcgaaatctcgattcaaaaccttcaagtta 755


 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 16  aataataacaacaaca 31
           ||||||||||||||||
Sbjct: 219 aataataacaacaaca 234


>Contig-U11096-1 (Contig-U11096-1Q) /CSM_Contig/Contig-U11096-1Q.Seq.d
          Length = 2277

 Score = 36.2 bits (18), Expect = 0.085
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  aataataacaacaacagaaata 37
           ||||||||||||||||| ||||
Sbjct: 338 aataataacaacaacagcaata 359


>Contig-U01312-1 (Contig-U01312-1Q) /CSM_Contig/Contig-U01312-1Q.Seq.d
          Length = 1238

 Score = 36.2 bits (18), Expect = 0.085
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 14  tgaataataacaacaaca 31
           ||||||||||||||||||
Sbjct: 767 tgaataataacaacaaca 784


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9706
Number of Sequences: 8361
Number of extensions: 9706
Number of successful extensions: 1061
Number of sequences better than 10.0: 128
length of query: 867
length of database: 7,895,291
effective HSP length: 16
effective length of query: 851
effective length of database: 7,761,515
effective search space: 6605049265
effective search space used: 6605049265
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 5
Homology vs DNA 
Query= Contig-U01729-1 (Contig-U01729-1Q) /CSM_Contig/Contig-U01729-1Q.Seq.d
         (867 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116551) Dictyostelium discoideum chromosome 2 map complem...   670   0.0    5
(C93084) Dictyostelium discoideum slug cDNA, clone SSF783.        670   0.0    5
(C90146) Dictyostelium discoideum slug cDNA, clone SSI143.        670   0.0    3
(AU073046) Dictyostelium discoideum slug cDNA, clone SSF783.      107   7e-19  1
(DQ213343) Taeniopygia guttata clone 0063P0009C07 mRNA seque...    52   0.036  1
(DV959298) SB03044A1G08.f1 Normalized subtracted Keck-Tagu L...    52   0.036  1
(FE732771) SB06011A1B03.f1 Normalized subtracted Keck-Tagu L...    52   0.036  1
(FE723409) SB05012A2D02.f1 Normalized subtracted Keck-Tagu L...    52   0.036  1
(CU695129) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.085  2
(CT274597) Sus scrofa genomic clone CH242-154N18, genomic su...    36   0.11   2
(AM467184) Vitis vinifera contig VV78X124538.5, whole genome...    50   0.14   1
(BX629347) Zebrafish DNA sequence from clone DKEY-103K21 in ...    48   0.57   1
(BX004874) Zebrafish DNA sequence from clone CH211-39E15 in ...    48   0.57   1
(AL844587) Zebrafish DNA sequence from clone DKEY-7E14 in li...    48   0.57   1
(AY309781) Zea mays clone rp1_Cuzcop3 rust resistance protei...    48   0.57   1
(AY309780) Zea mays clone rp1_Cuzcop2 rust resistance protei...    48   0.57   1
(AM484661) Vitis vinifera contig VV78X138635.31, whole genom...    48   0.57   1
(AF466932) Zea mays clone BAC 206C17, complete sequence.           48   0.57   1
(AF466931) Zea mays clone BAC 163K15, complete sequence.           48   0.57   1
(AC152495) Zea mays BAC clone Z486N13, complete sequence.          48   0.57   1
(AC152494) Zea mays BAC clone Z418K17, complete sequence.          48   0.57   1
(AC149833) Zea mays clone ZMMBBb0523A01, *** SEQUENCING IN P...    48   0.57   1
(AC206557) Zea mays chromosome 10 clone CH201-500B17; ZMMBBc...    48   0.57   1
(AC203921) Zea mays chromosome 10 clone CH201-7I19; ZMMBBc00...    48   0.57   1
(AC203569) Zea mays chromosome 10 clone CH201-540D24; ZMMBBc...    48   0.57   1
(AC193989) Zea mays chromosome 6 clone ZMMBBb-108J22; ZMMBBb...    48   0.57   1
(AC193453) Zea mays chromosome 10 clone CH201-418K17; ZMMBBc...    48   0.57   1
(AC186373) Zea mays chromosome 6 clone ZMMBBb-612C21; ZMMBBb...    48   0.57   1
(CG016316) ZUAB920TH ZM_3.0_4.0_KB Zea mays genomic clone ZM...    48   0.57   1
(BZ985727) PUGFM43TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   0.57   1
(BZ970397) PUCBK34TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   0.57   1
(ED533920) KBrB125P19F KBrB, Brassica rapa BamHI BAC library...    38   2.0    2
(BX248402) Zebrafish DNA sequence from clone CH211-226P14 in...    46   2.2    1
(AL844553) Mouse DNA sequence from clone RP23-255J15 on chro...    46   2.2    1
(AC153384) Mus musculus 6 BAC RP23-388D3 (Roswell Park Cance...    46   2.2    1
(AC100744) Mus musculus clone RP24-320J6, WORKING DRAFT SEQU...    46   2.2    1
(AC177007) Strongylocentrotus purpuratus clone R3-37E11, WOR...    46   2.2    1
(AC169876) Macaca mulatta clone CH250-107A2, *** SEQUENCING ...    46   2.2    1
(AZ069391) RPCI-23-435F8.TJ RPCI-23 Mus musculus genomic clo...    46   2.2    1
(AZ011449) RPCI-23-363D22.TJ RPCI-23 Mus musculus genomic cl...    46   2.2    1
(FH566090) CHO_OF4693xo19r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.2    1
(FH327240) CHO_OF4561xj04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.2    1
(ET763865) CHO_OF162xp11f1.ab1 CHO_OF Nicotiana tabacum geno...    46   2.2    1
(DY278271) IC0AAA46AF12RM1 CitNFL Citrus clementina cDNA 5',...    46   2.2    1
(GE441928) 294563876 Nasonia vitripennis Adult Female Nasoni...    46   2.2    1
(GE401016) 293787529 Nasonia vitripennis Female Pupae Nasoni...    46   2.2    1
(GE384234) 293424928 Nasonia vitripennis Female Pupae Nasoni...    46   2.2    1
(GE373930) 292311365 Nasonia vitripennis Male Pupae Nasonia ...    46   2.2    1
(FC880978) IC0AAA46AF12RM1 IVIA1 Citrus clementina cDNA clon...    46   2.2    1
(EY755088) CS12-C1-001-023-H04-CT.F Sweet orange leaf, field...    46   2.2    1
(AC172877) Brassica rapa subsp. campestris clone KBrH042F19,...    32   4.4    2
(AC199077) Zea mays chromosome 10 clone CH201-64G11; ZMMBBc0...    42   4.6    2
(AC084353) Homo sapiens BAC clone RP11-592K15 from 4, comple...    38   5.6    2
(EK364010) 1095469389609 Global-Ocean-Sampling_GS-31-01-01-1...    32   5.7    2
(AM451262) Vitis vinifera, whole genome shotgun sequence, co...    42   7.1    2
(CU693491) Zebrafish DNA sequence from clone CH73-239K17 in ...    44   7.7    3
(CU640433) Zebrafish DNA sequence from clone DKEY-151J17 in ...    44   8.9    1
(CR759887) Zebrafish DNA sequence from clone DKEY-80C24 in l...    44   8.9    1
(BX548162) Zebrafish DNA sequence from clone DKEYP-90D11 in ...    44   8.9    1
(AC159477) Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance...    44   8.9    1
(AC153623) Mus musculus 6 BAC RP23-459F14 (Roswell Park Canc...    44   8.9    1
(AC123809) Mus musculus BAC clone RP24-174M12 from chromosom...    44   8.9    1
(AC117809) Mus musculus chromosome 19, clone RP24-571N5, com...    44   8.9    1
(AC101689) Mus musculus chromosome 1, clone RP23-217C21, com...    44   8.9    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.9    1
(AP005444) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.9    1
(AP004395) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.9    1
(AM450134) Vitis vinifera contig VV78X270133.5, whole genome...    44   8.9    1
(AC026757) Arabidopsis thaliana chromosome 1 BAC F2H10 genom...    44   8.9    1
(AC010723) Homo sapiens BAC clone RP11-139C10 from Y, comple...    44   8.9    1
(AC152475) Dasypus novemcinctus clone VMRC5-321J3, WORKING D...    44   8.9    1
(AC127162) Rattus norvegicus clone CH230-140M12, *** SEQUENC...    44   8.9    1
(AC120923) Rattus norvegicus clone CH230-33J11, *** SEQUENCI...    44   8.9    1
(AC112822) Rattus norvegicus clone CH230-35C18, *** SEQUENCI...    44   8.9    1
(FP102030) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.9    1
(AC094033) Rattus norvegicus clone CH230-43N8, *** SEQUENCIN...    44   8.9    1
(AC084011) Homo sapiens chromosome UL clone RP11-76I22, WORK...    44   8.9    1
(AC079434) Mus musculus chromosome 16 clone RP23-95I8, WORKI...    44   8.9    1
(BX005160) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.9    1
(AP010168) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   8.9    1
(AC184721) Microcebus murinus clone CH257-358N10, WORKING DR...    44   8.9    1
(AC170044) Muntiacus reevesi clone CH245-15E6, WORKING DRAFT...    44   8.9    1
(AC170035) Muntiacus muntjak vaginalis clone CH244-165G16, W...    44   8.9    1
(AC168950) Muntiacus reevesi clone CH245-24F13, WORKING DRAF...    44   8.9    1
(AC167395) Bos taurus clone CH240-190O2, WORKING DRAFT SEQUE...    44   8.9    1
(EK336744) 1095467045040 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EK320700) 1095462428406 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EK138346) 1095454042046 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EI285722) GM_WBc0005E16.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(ED400291) AUAC-aas17g06.b1 Ascaris suum whole genome shotgu...    44   8.9    1
(CU316639) Flanking Sequence Tags of the ty1 copia retrotran...    44   8.9    1
(BZ942448) CH240_93F23.TV CHORI-240 Bos taurus genomic clone...    44   8.9    1
(CJ361933) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(CJ359400) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(CJ359214) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(CJ359213) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(CJ359000) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(CJ358566) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(CJ356562) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(CJ356272) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.9    1
(BY670565) Mus musculus 14.5 days embryo df/df Rathke's pouc...    44   8.9    1
(BQ081463) san24g04.y1 Gm-c1084 Glycine max cDNA clone SOYBE...    44   8.9    1
(FE726891) SB05022A2F12.f1 Normalized subtracted Keck-Tagu L...    44   8.9    1
(AC034159) Homo sapiens BAC clone RP11-344G13 from 4, comple...    42   9.5    4

>(AC116551) Dictyostelium discoideum chromosome 2 map
             complement(581327-427576) strain AX4, complete sequence.
          Length = 153751

 Score =  670 bits (338), Expect(5) = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus


Query: 235   ttagctcaattactattaacaattacagttctccttctgttgtaggccattctctctcaa 294
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82381 ttagctcaattactattaacaattacagttctccttctgttgtaggccattctctctcaa 82322


Query: 295   gtgctgccatggttcctgatatgatggagtacaactctgatgctttctcttgcccaaatg 354
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82321 gtgctgccatggttcctgatatgatggagtacaactctgatgctttctcttgcccaaatg 82262


Query: 355   ctccaaccaattatacctcttatttaattggtttataccaccataccttggatgaagagt 414
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82261 ctccaaccaattatacctcttatttaattggtttataccaccataccttggatgaagagt 82202


Query: 415   actcttccatgttgctaaattatgacgaaaatgttggccatctcaataactatggctcaa 474
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82201 actcttccatgttgctaaattatgacgaaaatgttggccatctcaataactatggctcaa 82142


Query: 475   tgtttgaattaatgaaaggtagtgacaacaatagtattccttcatccccttcctctgcct 534
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82141 tgtttgaattaatgaaaggtagtgacaacaatagtattccttcatccccttcctctgcct 82082


Query: 535   tggtttccctttgttcaagttcccaaactgtaccatct 572
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 82081 tggtttccctttgttcaagttcccaaactgtaccatct 82044

 Score =  147 bits (74), Expect(5) = 0.0
 Identities = 74/74 (100%)
 Strand = Plus / Minus


Query: 629   cgacattttttcgatttctcaatattcaaaacattttatgttgcggtggtggaataattg 688
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81987 cgacattttttcgatttctcaatattcaaaacattttatgttgcggtggtggaataattg 81928


Query: 689   gtatataaaccgac 702
             ||||||||||||||
Sbjct: 81927 gtatataaaccgac 81914

 Score =  107 bits (54), Expect(5) = 0.0
 Identities = 54/54 (100%)
 Strand = Plus / Minus


Query: 1     aatatatacataatgaataataacaacaacagaaataaatatttatcttcttct 54
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82745 aatatatacataatgaataataacaacaacagaaataaatatttatcttcttct 82692

 Score = 91.7 bits (46), Expect(5) = 0.0
 Identities = 46/46 (100%)
 Strand = Plus / Minus


Query: 782   caataggattgttgaaagaaaaaaactattatttgtacatagtatc 827
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81834 caataggattgttgaaagaaaaaaactattatttgtacatagtatc 81789

 Score = 60.0 bits (30), Expect(5) = 0.0
 Identities = 30/30 (100%)
 Strand = Plus / Minus


Query: 726   tcgaaatctcgattcaaaaccttcaagtta 755
             ||||||||||||||||||||||||||||||
Sbjct: 81890 tcgaaatctcgattcaaaaccttcaagtta 81861

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 727,839,603
Number of extensions: 47764734
Number of successful extensions: 3773059
Number of sequences better than 10.0: 105
Length of query: 867
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 843
Effective length of database: 99,340,224,878
Effective search space: 83743809572154
Effective search space used: 83743809572154
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01729-1 (Contig-U01729-1Q) /CSM_Contig/Contig-U01729-1Q.Seq.d
         (867 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 851,317,482
Number of extensions: 14727889
Number of successful extensions: 33080
Number of sequences better than 10.0: 0
Number of HSP's gapped: 33070
Number of HSP's successfully gapped: 0
Length of query: 289
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 162
Effective length of database: 640,137,871
Effective search space: 103702335102
Effective search space used: 103702335102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.09  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for Contig-U01729-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0