Contig-U11079-1 |
Contig ID |
Contig-U11079-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1510 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
4839803 |
End point |
4838293 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
4 |
Link to clone list |
U11079 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.22 |
Homology vs DNA |
Query= Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Contig-U11079-1Q.Seq.d (1520 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ350783) Dictyostelium discoideum cDNA clone:dda41c04, 3' ... 1584 0.0 1 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 1570 0.0 1 (BJ346223) Dictyostelium discoideum cDNA clone:dda30d08, 3' ... 1338 0.0 2 (BJ332970) Dictyostelium discoideum cDNA clone:dda41c04, 5' ... 347 0.0 3 (BJ328964) Dictyostelium discoideum cDNA clone:dda30d08, 5' ... 347 0.0 3 (FK059898) XABT123780.b1 Gateway compatible cien cDNA librar... 60 3e-04 1 (ES499786) BIG_AF_7602 Brine Shrimp diapaused embryos (cysts... 52 0.063 1 (FK181182) XABT199222.g1 Gateway compatible cien cDNA librar... 52 0.063 1 (AW224084) EST300895 tomato fruit red ripe, TAMU Solanum lyc... 36 0.19 2 (AC192740) Pan troglodytes BAC clone CH251-35A11 from chromo... 38 0.38 6 (BU904301) AGENCOURT_10172836 NICHD_XGC_Kid1 Xenopus laevis ... 46 0.39 2 (AM055459) Polyplastron multivesiculatum EST, clone Pm04_E11. 48 0.99 1 (AI977518) EST272112 Schistosoma mansoni male, Phil LoVerde/... 46 1.00 2 (EJ939386) 1093018856313 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.3 2 (DB159088) Homo sapiens cDNA clone THYMU3038750, 5' end, mRN... 36 1.7 3 (AM428997) Vitis vinifera contig VV78X265083.4, whole genome... 36 2.4 2 (DH469764) Monosiga ovata DNA, fosmid clone: MOF-014L03, gen... 34 2.7 2 (AM472622) Vitis vinifera contig VV78X048853.5, whole genome... 46 3.9 1 (AM444387) Vitis vinifera contig VV78X044181.9, whole genome... 46 3.9 1 (AM435004) Vitis vinifera contig VV78X089435.17, whole genom... 46 3.9 1 (AM431596) Vitis vinifera contig VV78X113440.10, whole genom... 46 3.9 1 (AL512444) Human DNA sequence from clone RP11-69E9 on chromo... 46 3.9 1 (AC162511) Bos taurus clone CH240-113F1, WORKING DRAFT SEQUE... 46 3.9 1 (AC013611) Homo sapiens clone RP11-10K8, WORKING DRAFT SEQUE... 46 3.9 1 (EK431541) 1095516156452 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1 (EJ176922) 1092344104630 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.9 1 (CT523359) A BAC library has been constructed from cultivar ... 46 3.9 1 (BW458565) Ciona intestinalis cDNA, clone:cijv029a06, 3'end,... 46 3.9 1 (BW434497) Ciona intestinalis cDNA, clone:cijv029a06, 5'end,... 46 3.9 1 (BW401782) Ciona intestinalis cDNA, clone:ciem837i03, 3'end,... 46 3.9 1 (BW390172) Ciona intestinalis cDNA, clone:ciem801m13, 3'end,... 46 3.9 1 (BW387480) Ciona intestinalis cDNA, clone:cidg845a06, 3'end,... 46 3.9 1 (BW384286) Ciona intestinalis cDNA, clone:cidg835m21, 3'end,... 46 3.9 1 (BW373348) Ciona intestinalis cDNA, clone:cidg801j04, 3'end,... 46 3.9 1 (BW311947) Ciona intestinalis cDNA, clone:ciht021h23, 5' end... 46 3.9 1 (BW181116) Ciona intestinalis cDNA, clone:rciht021h23, 3' en... 46 3.9 1 (BW149410) Ciona intestinalis cDNA, clone:rcign009g17, 3' en... 46 3.9 1 (BW133158) Ciona intestinalis cDNA, clone:rcign032m12, 3' en... 46 3.9 1 (FK915384) EST_lsal_evj_956292 lsalevj mixed_tissue_mixed_st... 46 3.9 1 (FK909556) EST_lsal_evj_949821 lsalevj mixed_tissue_mixed_st... 46 3.9 1 (FK909555) EST_lsal_evj_933693 lsalevj mixed_tissue_mixed_st... 46 3.9 1 (FK189356) XABT204292.g1 Gateway compatible cien cDNA librar... 46 3.9 1 (FK135868) XABT171372.g1 Gateway compatible cien cDNA librar... 46 3.9 1 (FK121040) XABT162460.g1 Gateway compatible cien cDNA librar... 46 3.9 1 (FF798831) XABT91999.rev Gateway compatible cien cDNA librar... 46 3.9 1 (FF790369) XABT86328.rev Gateway compatible cien cDNA librar... 46 3.9 1 (FF756696) XABT63587.rev Gateway compatible cien cDNA librar... 46 3.9 1 (FF750360) XABT59150.rev Gateway compatible cien cDNA librar... 46 3.9 1 (FF741543) XABT53081.rev Gateway compatible cien cDNA librar... 46 3.9 1 (FF740794) XABT52587.rev Gateway compatible cien cDNA librar... 46 3.9 1 (FF738096) XABT50767.rev Gateway compatible cien cDNA librar... 46 3.9 1 (FF690466) XABT103263.rev Gateway compatible cien cDNA libra... 46 3.9 1 (FC841947) CBHN1721.rev CBHN Metridium senile tentacle Metri... 46 3.9 1 (FC840154) CBHI8744.rev CBHI Metridium senile tentacle Metri... 46 3.9 1 (CP000141) Carboxydothermus hydrogenoformans Z-2901, complet... 46 3.9 1 (DY225052) ID0AAI4YK15RM1 ID0AEE Acyrthosiphon pisum cDNA cl... 36 4.1 2 (AZ534864) ENTCC36TR Entamoeba histolytica Sheared DNA Entam... 40 5.1 2 (AC125501) Takifugu rubripes clone 251J5, WORKING DRAFT SEQU... 32 7.4 2 (DR134504) 49234500 Drosophila pseudoobscura embryonic cDNA ... 32 9.6 2 (AB023032) Arabidopsis thaliana genomic DNA, chromosome 5, T... 38 9.6 6 (DQ345300) Vigna radiata clone GBSSR-MB13 microsatellite seq... 32 9.9 2 (AC171138) Helobdella robusta clone CH306-1A9, complete sequ... 34 9.9 7 (AF241823) Dictyostelium discoideum prespore protein MF12 ge... 32 10.0 5
>(BJ350783) Dictyostelium discoideum cDNA clone:dda41c04, 3' end, single read. Length = 841
Score = 1584 bits (799), Expect = 0.0 Identities = 799/799 (100%) Strand = Plus / Minus
Query: 681 caatttccaagtattataaaatgcccaaatacatggacagatgtagactcaatgaattat 740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 caatttccaagtattataaaatgcccaaatacatggacagatgtagactcaatgaattat 782
Query: 741 aaagaggttgatgtgaaaccacatgagaatgagttccaatggatgagtaaattatttagt 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 aaagaggttgatgtgaaaccacatgagaatgagttccaatggatgagtaaattatttagt 722
Query: 801 caaaccatttcaagtaatcataaaggtatgggtacattatcaccaattgttttcaatgat 860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 caaaccatttcaagtaatcataaaggtatgggtacattatcaccaattgttttcaatgat 662
Query: 861 ttaaaggttacccgtgttgttagagtgcaaaatccaatgttatgggttagttatcatgca 920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ttaaaggttacccgtgttgttagagtgcaaaatccaatgttatgggttagttatcatgca 602
Query: 921 agaaaacaaaagattctcgatgataacaatgggtcatgtccaccaattcatagtgttatc 980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 agaaaacaaaagattctcgatgataacaatgggtcatgtccaccaattcatagtgttatc 542
Query: 981 accaatattcctggtagtccggaattggataagaaagccaatgaattattcttattccat 1040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 accaatattcctggtagtccggaattggataagaaagccaatgaattattcttattccat 482
Query: 1041 ggtttaaacgtttcatcagttgctggtattgcaaagtttggtttcgatccaagattttgc 1100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ggtttaaacgtttcatcagttgctggtattgcaaagtttggtttcgatccaagattttgc 422
Query: 1101 tctttggatggtatgtttggtgctgggctttactttgcagagaattcatcaaaatcaaat 1160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tctttggatggtatgtttggtgctgggctttactttgcagagaattcatcaaaatcaaat 362
Query: 1161 caatattgtcatggaggtgcttgtacttgtagtggtttccaagctacctcttgtaaatgt 1220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 caatattgtcatggaggtgcttgtacttgtagtggtttccaagctacctcttgtaaatgt 302
Query: 1221 aaaccaagtgatgaagtttgtttattggtttgtcgtgtggttatgggtgattgcttggtt 1280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aaaccaagtgatgaagtttgtttattggtttgtcgtgtggttatgggtgattgcttggtt 242
Query: 1281 gaaaatgttttccgtggtaatggtcctggtcaattttggaatggtcgtagaactgaacca 1340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gaaaatgttttccgtggtaatggtcctggtcaattttggaatggtcgtagaactgaacca 182
Query: 1341 aagaaaccaaataatatcaatatttacaatagtgtcattggtgaatcaaaaccaaattat 1400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aagaaaccaaataatatcaatatttacaatagtgtcattggtgaatcaaaaccaaattat 122
Query: 1401 ggtccaaaagctgctttacaacttcgtgaatatattgtttatgaatcaagtcaagtattt 1460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggtccaaaagctgctttacaacttcgtgaatatattgtttatgaatcaagtcaagtattt 62
Query: 1461 gttgaatataaggtttatt 1479 ||||||||||||||||||| Sbjct: 61 gttgaatataaggtttatt 43
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,483,672,980 Number of extensions: 95302016 Number of successful extensions: 8245122 Number of sequences better than 10.0: 64 Length of query: 1520 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1496 Effective length of database: 97,308,875,965 Effective search space: 145574078443640 Effective search space used: 145574078443640 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |