Contig-U11079-1
Contig ID Contig-U11079-1
Contig update 2002.12.18
Contig sequence
>Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Contig-U11079-1Q.Seq.d
TGGAGTTTATAGAAAACAATAGAAATATATAATAATAATAATAATAATTT
TTGTTGAATTGGATAATAATAATAATAATAATAATAATAATAATAAATTA
AAAATTAAAAATTAAAAATTAAAAATTAAAATTAAATGCCACCAAAAAAG
AAACCAGTGACAGCATCAAATGCAGTTACACAGTCATCATCAGCAACAAC
AGCAATACCAACCACTATAAATATACCAGTTGCAGCAACAGCTGTTGTTG
CACAAAAAAAGATTCAATGGTGTTGGGCAGGTGATTCGGGAGTTGGAGCT
TCCCAAGATATTTTAGTAGAATATGATAGTAAATTAAATTCAGAGATCGA
ATCTCAATATCAAATGCATCTTTTGAAACCAAAAGTTTTAAAATATTTAA
GATTCAAACTTGATAAAGAAAGATATATAGATTTTAAAAAAATGGTTCAA
ACAAGATATGATGATTTAAATAAAATGAGAACTGTTGAAAGACAAGAAAT
TATACCAGGATCAACATTACCACCACCAACTACAAATGCAACATCAAAAA
GAAGAAGAAAAATAATAAGTAGTGATGATAGTGATACAGATAGTGAGAAT
AGTGATAGTAGTAGTGATAGTAGTGATAGTGATGTTAGTGATGATAGTGA
TGATGATGAAGATGATGAAG----------CAATTTCCAAGTATTATAAA
ATGCCCAAATACATGGACAGATGTAGACTCAATGAATTATAAAGAGGTTG
ATGTGAAACCACATGAGAATGAGTTCCAATGGATGAGTAAATTATTTAGT
CAAACCATTTCAAGTAATCATAAAGGTATGGGTACATTATCACCAATTGT
TTTCAATGATTTAAAGGTTACCCGTGTTGTTAGAGTGCAAAATCCAATGT
TATGGGTTAGTTATCATGCAAGAAAACAAAAGATTCTCGATGATAACAAT
GGGTCATGTCCACCAATTCATAGTGTTATCACCAATATTCCTGGTAGTCC
GGAATTGGATAAGAAAGCCAATGAATTATTCTTATTCCATGGTTTAAACG
TTTCATCAGTTGCTGGTATTGCAAAGTTTGGTTTCGATCCAAGATTTTGC
TCTTTGGATGGTATGTTTGGTGCTGGGCTTTACTTTGCAGAGAATTCATC
AAAATCAAATCAATATTGTCATGGAGGTGCTTGTACTTGTAGTGGTTTCC
AAGCTACCTCTTGTAAATGTAAACCAAGTGATGAAGTTTGTTTATTGGTT
TGTCGTGTGGTTATGGGTGATTGCTTGGTTGAAAATGTTTTCCGTGGTAA
TGGTCCTGGTCAATTTTGGAATGGTCGTAGAACTGAACCAAAGAAACCAA
ATAATATCAATATTTACAATAGTGTCATTGGTGAATCAAAACCAAATTAT
GGTCCAAAAGCTGCTTTACAACTTCGTGAATATATTGTTTATGAATCAAG
TCAAGTATTTGTTGAATATAAGGTTTATTTTAAAAGAGTTAAATAATAAA
AAAATTAAAAATTAAAAAAA

Gap gap included
Contig length 1510
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4839803
End point 4838293
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U11079
List of clone(s)

est1=AFO826F,1,645
est2=AHF210F,9,670
est3=AHF210Z,671,1511
est4=AFO826Z,757,1491
Translated Amino Acid sequence
wsl*ktieiynnnnnnfc*ig***********ikn*klkikn*n*MPPKKKPVTASNAVT
QSSSATTAIPTTINIPVAATAVVAQKKIQWCWAGDSGVGASQDILVEYDSKLNSEIESQY
QMHLLKPKVLKYLRFKLDKERYIDFKKMVQTRYDDLNKMRTVERQEIIPGSTLPPPTTNA
TSKRRRKIISSDDSDTDSENSDSSSDSSDSDVSDDSDDDEDDE---

---QFPSIIKCPNTWTDVDSMNYKEVDVKPHENEFQWMSKLFSQTISSNHKGMGTLSPIV
FNDLKVTRVVRVQNPMLWVSYHARKQKILDDNNGSCPPIHSVITNIPGSPELDKKANELF
LFHGLNVSSVAGIAKFGFDPRFCSLDGMFGAGLYFAENSSKSNQYCHGGACTCSGFQATS
CKCKPSDEVCLLVCRVVMGDCLVENVFRGNGPGQFWNGRRTEPKKPNNINIYNSVIGESK
PNYGPKAALQLREYIVYESSQVFVEYKVYFKRVK**kn*klkk


Translated Amino Acid sequence (All Frames)
Frame A:
wsl*ktieiynnnnnnfc*ig***********ikn*klkikn*n*MPPKKKPVTASNAVT
QSSSATTAIPTTINIPVAATAVVAQKKIQWCWAGDSGVGASQDILVEYDSKLNSEIESQY
QMHLLKPKVLKYLRFKLDKERYIDFKKMVQTRYDDLNKMRTVERQEIIPGSTLPPPTTNA
TSKRRRKIISSDDSDTDSENSDSSSDSSDSDVSDDSDDDEDDE---

---QFPSIIKCPNTWTDVDSMNYKEVDVKPHENEFQWMSKLFSQTISSNHKGMGTLSPIV
FNDLKVTRVVRVQNPMLWVSYHARKQKILDDNNGSCPPIHSVITNIPGSPELDKKANELF
LFHGLNVSSVAGIAKFGFDPRFCSLDGMFGAGLYFAENSSKSNQYCHGGACTCSGFQATS
CKCKPSDEVCLLVCRVVMGDCLVENVFRGNGPGQFWNGRRTEPKKPNNINIYNSVIGESK
PNYGPKAALQLREYIVYESSQVFVEYKVYFKRVK**kn*klkk

Frame B:
gvyrkq*kyiiiiiiifveldnnnnnnnnnnklkikn*klkikikchqkrnq*qhqmqlh
shhqqqqqyqpl*iyqlqqqlllhkkrfngvgqvirelelpkif**nmivn*iqrsnlni
kcif*nqkf*ni*dsnlikkdi*ilkkwfkqdmmi*ik*ellkdkklyqdqhyhhqlqmq
hqkeeek**vvmiviqivrivivvvivvivmlvmivmmmkmmk---

---nfqvl*naqihgqm*tq*iikrlm*nhmrmssng*vnylvkpfqviikvwvhyhqlf
smi*rlpvlleckiqcyglvimqenkrfsmitmghvhqfivlspiflvvrnwirkpmnys
ysmv*tfhqllvlqslvsiqdfalwmvclvlgftlqrihqnqinivmevlvlvvvsklpl
vnvnqvmkfvywfvvwlwviawlkmfsvvmvlvnfgmvvelnqrnqiisiftivslvnqn
qimvqkllynfvnilfmnqvkyllnirfilkelnnkkikn*k

Frame C:
efiennrni******fllnwiiiiiiiiiiin*klkikn*klklnatkketsdsikcsyt
viisnnsntnhykytscsnsccctkkdsmvlgr*fgswsfpryfsri***ikfrdrisis
nasfetksfkifkiqt**rkiyrf*kngsnki**fk*nenc*ktrnytrinitttnykcn
ikkkkknnk*****yr**e***********c********r**---

---iskyykmpkymdrcrlnel*rg*cett*e*vpmde*ii*snhfk*s*rygyiitncf
q*fkgypcc*saksnvmg*lsckktkdsr**qwvmstns*cyhqysw*sgig*esq*iil
ipwfkrfiscwyckvwfrskillfgwyvwcwallcrefikiksilswrclyl*wfpsyll
*m*tk**slfiglscgyg*llg*kcfpw*wswsilews*n*tketk*yqylq*chw*ikt
klwskscftts*iycl*ikssic*i*glf*ks*iikklkikk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11079-1 (Contig-U11079-1Q)
/CSM_Contig/Contig-U11079-1Q.Seq.d
(1520 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Conti... 1620 0.0
Contig-U11235-1 (Contig-U11235-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U10328-1 (Contig-U10328-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U09894-1 (Contig-U09894-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U08691-1 (Contig-U08691-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U03270-1 (Contig-U03270-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U11018-1 (Contig-U11018-1Q) /CSM_Contig/Conti... 36 0.11

>Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Contig-U11079-1Q.Seq.d
Length = 1520

Score = 1620 bits (817), Expect = 0.0
Identities = 817/817 (100%)
Strand = Plus / Plus


Query: 681 caatttccaagtattataaaatgcccaaatacatggacagatgtagactcaatgaattat 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caatttccaagtattataaaatgcccaaatacatggacagatgtagactcaatgaattat 740


Query: 741 aaagaggttgatgtgaaaccacatgagaatgagttccaatggatgagtaaattatttagt 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagaggttgatgtgaaaccacatgagaatgagttccaatggatgagtaaattatttagt 800


Query: 801 caaaccatttcaagtaatcataaaggtatgggtacattatcaccaattgttttcaatgat 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaaccatttcaagtaatcataaaggtatgggtacattatcaccaattgttttcaatgat 860


Query: 861 ttaaaggttacccgtgttgttagagtgcaaaatccaatgttatgggttagttatcatgca 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttaaaggttacccgtgttgttagagtgcaaaatccaatgttatgggttagttatcatgca 920


Query: 921 agaaaacaaaagattctcgatgataacaatgggtcatgtccaccaattcatagtgttatc 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agaaaacaaaagattctcgatgataacaatgggtcatgtccaccaattcatagtgttatc 980


Query: 981 accaatattcctggtagtccggaattggataagaaagccaatgaattattcttattccat 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 accaatattcctggtagtccggaattggataagaaagccaatgaattattcttattccat 1040


Query: 1041 ggtttaaacgtttcatcagttgctggtattgcaaagtttggtttcgatccaagattttgc 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ggtttaaacgtttcatcagttgctggtattgcaaagtttggtttcgatccaagattttgc 1100


Query: 1101 tctttggatggtatgtttggtgctgggctttactttgcagagaattcatcaaaatcaaat 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tctttggatggtatgtttggtgctgggctttactttgcagagaattcatcaaaatcaaat 1160


Query: 1161 caatattgtcatggaggtgcttgtacttgtagtggtttccaagctacctcttgtaaatgt 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 caatattgtcatggaggtgcttgtacttgtagtggtttccaagctacctcttgtaaatgt 1220


Query: 1221 aaaccaagtgatgaagtttgtttattggtttgtcgtgtggttatgggtgattgcttggtt 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 aaaccaagtgatgaagtttgtttattggtttgtcgtgtggttatgggtgattgcttggtt 1280


Query: 1281 gaaaatgttttccgtggtaatggtcctggtcaattttggaatggtcgtagaactgaacca 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 gaaaatgttttccgtggtaatggtcctggtcaattttggaatggtcgtagaactgaacca 1340


Query: 1341 aagaaaccaaataatatcaatatttacaatagtgtcattggtgaatcaaaaccaaattat 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 aagaaaccaaataatatcaatatttacaatagtgtcattggtgaatcaaaaccaaattat 1400


Query: 1401 ggtccaaaagctgctttacaacttcgtgaatatattgtttatgaatcaagtcaagtattt 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 ggtccaaaagctgctttacaacttcgtgaatatattgtttatgaatcaagtcaagtattt 1460


Query: 1461 gttgaatataaggtttattttaaaagagttaaataat 1497
|||||||||||||||||||||||||||||||||||||
Sbjct: 1461 gttgaatataaggtttattttaaaagagttaaataat 1497


Score = 749 bits (378), Expect = 0.0
Identities = 406/420 (96%)
Strand = Plus / Plus


Query: 150 gaaaccagtgacagcatcaaatgcagttacacagtcatcatcagcaacaacagcaatacc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gaaaccagtgacagcatcaaatgcagttacacagtcatcatcagcaacaacagcaatacc 209


Query: 210 aaccactataaatataccagttgcagcaacagctgttgttgcacnnnnnnngattcaatg 269
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 210 aaccactataaatataccagttgcagcaacagctgttgttgcacaaaaaaagattcaatg 269


Query: 270 gtgttgggcaggtgattcgggagttggagcttcccaagatattttagtagaatatgatag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtgttgggcaggtgattcgggagttggagcttcccaagatattttagtagaatatgatag 329


Query: 330 taaattaaattcagagatcgaatctcaatatcaaatgcatcttttgaaaccaaaagtttt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taaattaaattcagagatcgaatctcaatatcaaatgcatcttttgaaaccaaaagtttt 389


Query: 390 aaaatatttaagattcaaacttgataaagaaagatatatagattttnnnnnnntggttca 449
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 390 aaaatatttaagattcaaacttgataaagaaagatatatagattttaaaaaaatggttca 449


Query: 450 aacaagatatgatgatttaaataaaatgagaactgttgaaagacaagaaattataccagg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aacaagatatgatgatttaaataaaatgagaactgttgaaagacaagaaattataccagg 509


Query: 510 atcaacattaccaccaccaactacaaatgcaacatcaaaaagaagaagaaaaataataag 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atcaacattaccaccaccaactacaaatgcaacatcaaaaagaagaagaaaaataataag 569


Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 tggagtttatagaaaacaataga 23
|||||||||||||||||||||||
Sbjct: 1 tggagtttatagaaaacaataga 23


>Contig-U11235-1 (Contig-U11235-1Q) /CSM_Contig/Contig-U11235-1Q.Seq.d
Length = 2158

Score = 38.2 bits (19), Expect = 0.027
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 186 atcatcagcaacaacagcaatac 208
||||||| |||||||||||||||
Sbjct: 545 atcatcaacaacaacagcaatac 567


>Contig-U10328-1 (Contig-U10328-1Q) /CSM_Contig/Contig-U10328-1Q.Seq.d
Length = 1351

Score = 38.2 bits (19), Expect = 0.027
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1337 accaaagaaaccaaataat 1355
|||||||||||||||||||
Sbjct: 276 accaaagaaaccaaataat 294


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,594
Number of Sequences: 6905
Number of extensions: 20594
Number of successful extensions: 2269
Number of sequences better than 10.0: 271
length of query: 1520
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1504
effective length of database: 5,564,391
effective search space: 8368844064
effective search space used: 8368844064
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Contig-U11079-1Q.Seq.d
(1520 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ350783) Dictyostelium discoideum cDNA clone:dda41c04, 3' ... 1584 0.0 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 1570 0.0 1
(BJ346223) Dictyostelium discoideum cDNA clone:dda30d08, 3' ... 1338 0.0 2
(BJ332970) Dictyostelium discoideum cDNA clone:dda41c04, 5' ... 347 0.0 3
(BJ328964) Dictyostelium discoideum cDNA clone:dda30d08, 5' ... 347 0.0 3
(FK059898) XABT123780.b1 Gateway compatible cien cDNA librar... 60 3e-04 1
(ES499786) BIG_AF_7602 Brine Shrimp diapaused embryos (cysts... 52 0.063 1
(FK181182) XABT199222.g1 Gateway compatible cien cDNA librar... 52 0.063 1
(AW224084) EST300895 tomato fruit red ripe, TAMU Solanum lyc... 36 0.19 2
(AC192740) Pan troglodytes BAC clone CH251-35A11 from chromo... 38 0.38 6
(BU904301) AGENCOURT_10172836 NICHD_XGC_Kid1 Xenopus laevis ... 46 0.39 2
(AM055459) Polyplastron multivesiculatum EST, clone Pm04_E11. 48 0.99 1
(AI977518) EST272112 Schistosoma mansoni male, Phil LoVerde/... 46 1.00 2
(EJ939386) 1093018856313 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.3 2
(DB159088) Homo sapiens cDNA clone THYMU3038750, 5' end, mRN... 36 1.7 3
(AM428997) Vitis vinifera contig VV78X265083.4, whole genome... 36 2.4 2
(DH469764) Monosiga ovata DNA, fosmid clone: MOF-014L03, gen... 34 2.7 2
(AM472622) Vitis vinifera contig VV78X048853.5, whole genome... 46 3.9 1
(AM444387) Vitis vinifera contig VV78X044181.9, whole genome... 46 3.9 1
(AM435004) Vitis vinifera contig VV78X089435.17, whole genom... 46 3.9 1
(AM431596) Vitis vinifera contig VV78X113440.10, whole genom... 46 3.9 1
(AL512444) Human DNA sequence from clone RP11-69E9 on chromo... 46 3.9 1
(AC162511) Bos taurus clone CH240-113F1, WORKING DRAFT SEQUE... 46 3.9 1
(AC013611) Homo sapiens clone RP11-10K8, WORKING DRAFT SEQUE... 46 3.9 1
(EK431541) 1095516156452 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1
(EJ176922) 1092344104630 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.9 1
(CT523359) A BAC library has been constructed from cultivar ... 46 3.9 1
(BW458565) Ciona intestinalis cDNA, clone:cijv029a06, 3'end,... 46 3.9 1
(BW434497) Ciona intestinalis cDNA, clone:cijv029a06, 5'end,... 46 3.9 1
(BW401782) Ciona intestinalis cDNA, clone:ciem837i03, 3'end,... 46 3.9 1
(BW390172) Ciona intestinalis cDNA, clone:ciem801m13, 3'end,... 46 3.9 1
(BW387480) Ciona intestinalis cDNA, clone:cidg845a06, 3'end,... 46 3.9 1
(BW384286) Ciona intestinalis cDNA, clone:cidg835m21, 3'end,... 46 3.9 1
(BW373348) Ciona intestinalis cDNA, clone:cidg801j04, 3'end,... 46 3.9 1
(BW311947) Ciona intestinalis cDNA, clone:ciht021h23, 5' end... 46 3.9 1
(BW181116) Ciona intestinalis cDNA, clone:rciht021h23, 3' en... 46 3.9 1
(BW149410) Ciona intestinalis cDNA, clone:rcign009g17, 3' en... 46 3.9 1
(BW133158) Ciona intestinalis cDNA, clone:rcign032m12, 3' en... 46 3.9 1
(FK915384) EST_lsal_evj_956292 lsalevj mixed_tissue_mixed_st... 46 3.9 1
(FK909556) EST_lsal_evj_949821 lsalevj mixed_tissue_mixed_st... 46 3.9 1
(FK909555) EST_lsal_evj_933693 lsalevj mixed_tissue_mixed_st... 46 3.9 1
(FK189356) XABT204292.g1 Gateway compatible cien cDNA librar... 46 3.9 1
(FK135868) XABT171372.g1 Gateway compatible cien cDNA librar... 46 3.9 1
(FK121040) XABT162460.g1 Gateway compatible cien cDNA librar... 46 3.9 1
(FF798831) XABT91999.rev Gateway compatible cien cDNA librar... 46 3.9 1
(FF790369) XABT86328.rev Gateway compatible cien cDNA librar... 46 3.9 1
(FF756696) XABT63587.rev Gateway compatible cien cDNA librar... 46 3.9 1
(FF750360) XABT59150.rev Gateway compatible cien cDNA librar... 46 3.9 1
(FF741543) XABT53081.rev Gateway compatible cien cDNA librar... 46 3.9 1
(FF740794) XABT52587.rev Gateway compatible cien cDNA librar... 46 3.9 1
(FF738096) XABT50767.rev Gateway compatible cien cDNA librar... 46 3.9 1
(FF690466) XABT103263.rev Gateway compatible cien cDNA libra... 46 3.9 1
(FC841947) CBHN1721.rev CBHN Metridium senile tentacle Metri... 46 3.9 1
(FC840154) CBHI8744.rev CBHI Metridium senile tentacle Metri... 46 3.9 1
(CP000141) Carboxydothermus hydrogenoformans Z-2901, complet... 46 3.9 1
(DY225052) ID0AAI4YK15RM1 ID0AEE Acyrthosiphon pisum cDNA cl... 36 4.1 2
(AZ534864) ENTCC36TR Entamoeba histolytica Sheared DNA Entam... 40 5.1 2
(AC125501) Takifugu rubripes clone 251J5, WORKING DRAFT SEQU... 32 7.4 2
(DR134504) 49234500 Drosophila pseudoobscura embryonic cDNA ... 32 9.6 2
(AB023032) Arabidopsis thaliana genomic DNA, chromosome 5, T... 38 9.6 6
(DQ345300) Vigna radiata clone GBSSR-MB13 microsatellite seq... 32 9.9 2
(AC171138) Helobdella robusta clone CH306-1A9, complete sequ... 34 9.9 7
(AF241823) Dictyostelium discoideum prespore protein MF12 ge... 32 10.0 5

>(BJ350783) Dictyostelium discoideum cDNA clone:dda41c04, 3' end,
single read.
Length = 841

Score = 1584 bits (799), Expect = 0.0
Identities = 799/799 (100%)
Strand = Plus / Minus


Query: 681 caatttccaagtattataaaatgcccaaatacatggacagatgtagactcaatgaattat 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 caatttccaagtattataaaatgcccaaatacatggacagatgtagactcaatgaattat 782


Query: 741 aaagaggttgatgtgaaaccacatgagaatgagttccaatggatgagtaaattatttagt 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aaagaggttgatgtgaaaccacatgagaatgagttccaatggatgagtaaattatttagt 722


Query: 801 caaaccatttcaagtaatcataaaggtatgggtacattatcaccaattgttttcaatgat 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caaaccatttcaagtaatcataaaggtatgggtacattatcaccaattgttttcaatgat 662


Query: 861 ttaaaggttacccgtgttgttagagtgcaaaatccaatgttatgggttagttatcatgca 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttaaaggttacccgtgttgttagagtgcaaaatccaatgttatgggttagttatcatgca 602


Query: 921 agaaaacaaaagattctcgatgataacaatgggtcatgtccaccaattcatagtgttatc 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agaaaacaaaagattctcgatgataacaatgggtcatgtccaccaattcatagtgttatc 542


Query: 981 accaatattcctggtagtccggaattggataagaaagccaatgaattattcttattccat 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accaatattcctggtagtccggaattggataagaaagccaatgaattattcttattccat 482


Query: 1041 ggtttaaacgtttcatcagttgctggtattgcaaagtttggtttcgatccaagattttgc 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggtttaaacgtttcatcagttgctggtattgcaaagtttggtttcgatccaagattttgc 422


Query: 1101 tctttggatggtatgtttggtgctgggctttactttgcagagaattcatcaaaatcaaat 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctttggatggtatgtttggtgctgggctttactttgcagagaattcatcaaaatcaaat 362


Query: 1161 caatattgtcatggaggtgcttgtacttgtagtggtttccaagctacctcttgtaaatgt 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caatattgtcatggaggtgcttgtacttgtagtggtttccaagctacctcttgtaaatgt 302


Query: 1221 aaaccaagtgatgaagtttgtttattggtttgtcgtgtggttatgggtgattgcttggtt 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaccaagtgatgaagtttgtttattggtttgtcgtgtggttatgggtgattgcttggtt 242


Query: 1281 gaaaatgttttccgtggtaatggtcctggtcaattttggaatggtcgtagaactgaacca 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaatgttttccgtggtaatggtcctggtcaattttggaatggtcgtagaactgaacca 182


Query: 1341 aagaaaccaaataatatcaatatttacaatagtgtcattggtgaatcaaaaccaaattat 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaaaccaaataatatcaatatttacaatagtgtcattggtgaatcaaaaccaaattat 122


Query: 1401 ggtccaaaagctgctttacaacttcgtgaatatattgtttatgaatcaagtcaagtattt 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtccaaaagctgctttacaacttcgtgaatatattgtttatgaatcaagtcaagtattt 62


Query: 1461 gttgaatataaggtttatt 1479
|||||||||||||||||||
Sbjct: 61 gttgaatataaggtttatt 43

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,483,672,980
Number of extensions: 95302016
Number of successful extensions: 8245122
Number of sequences better than 10.0: 64
Length of query: 1520
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1496
Effective length of database: 97,308,875,965
Effective search space: 145574078443640
Effective search space used: 145574078443640
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Contig-U11079-1Q.Seq.d
(1520 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116956_27(AC116956|pid:none) Dictyostelium discoideum chromoso... 539 e-152
AE014297_3982(AE014297|pid:none) Drosophila melanogaster chromos... 91 1e-16
(Q9H2K2) RecName: Full=Tankyrase-2; Short=TANK2; ... 89 4e-16
AX062273_1(AX062273|pid:none) Sequence 132 from Patent WO0100849. 89 4e-16
AF305081_1(AF305081|pid:none) Homo sapiens tankyrase-related pro... 89 4e-16
AX062142_1(AX062142|pid:none) Sequence 1 from Patent WO0100849. ... 89 4e-16
AX076214_1(AX076214|pid:none) Sequence 4 from Patent WO0104326. 89 4e-16
AX062229_1(AX062229|pid:none) Sequence 88 from Patent WO0100849. 89 4e-16
AX062318_1(AX062318|pid:none) Sequence 177 from Patent WO0100849. 89 4e-16
AK023746_1(AK023746|pid:none) Homo sapiens cDNA FLJ13684 fis, cl... 87 2e-15
AK048860_1(AK048860|pid:none) Mus musculus 0 day neonate cerebel... 78 7e-13
BC057370_1(BC057370|pid:none) Mus musculus tankyrase, TRF1-inter... 78 7e-13
AF082556_1(AF082556|pid:none) Homo sapiens TRF1-interacting anky... 78 7e-13
AY142108_1(AY142108|pid:none) Gallus gallus tankyrase 1 mRNA, co... 78 1e-12
BC098394_1(BC098394|pid:none) Homo sapiens tankyrase, TRF1-inter... 77 1e-12
AK302534_1(AK302534|pid:none) Homo sapiens cDNA FLJ50918 complet... 77 2e-12
BC129510_1(BC129510|pid:none) Xenopus laevis hypothetical protei... 74 2e-11
BC099365_1(BC099365|pid:none) Xenopus laevis hypothetical protei... 74 2e-11
AX062186_1(AX062186|pid:none) Sequence 45 from Patent WO0100849. 71 9e-11
CR626874_1(CR626874|pid:none) Zebrafish DNA sequence from clone ... 66 3e-09
BC153346_1(BC153346|pid:none) Xenopus tropicalis TCDD-inducible ... 65 5e-09
BC172392_1(BC172392|pid:none) Synthetic construct Homo sapiens c... 64 1e-08
(Q460N5) RecName: Full=Poly [ADP-ribose] polymerase 14; ... 64 1e-08
DQ063584_1(DQ063584|pid:none) Homo sapiens B-aggressive lymphoma... 64 1e-08
CQ778409_1(CQ778409|pid:none) Sequence 1 from Patent WO2004014950. 64 1e-08
AY134858_1(AY134858|pid:none) Homo sapiens unknown mRNA. 64 1e-08
(Q8C1B2) RecName: Full=TCDD-inducible poly [ADP-ribose] polymera... 62 6e-08
JC7785(JC7785)TCDD-inducible poly(ADP-ribose) polymerase (EC 2.7... 61 9e-08
CR749647_1(CR749647|pid:none) Homo sapiens mRNA; cDNA DKFZp686P1... 60 2e-07
AK291261_1(AK291261|pid:none) Homo sapiens cDNA FLJ77540 complet... 60 2e-07
AB168771_1(AB168771|pid:none) Macaca fascicularis testis cDNA, c... 60 2e-07
AL080156_1(AL080156|pid:none) Homo sapiens mRNA; cDNA DKFZp434J2... 60 2e-07
BC034397_1(BC034397|pid:none) Homo sapiens TCDD-inducible poly(A... 59 5e-07
BC087316_1(BC087316|pid:none) Xenopus laevis hypothetical LOC495... 59 6e-07
BC120371_1(BC120371|pid:none) Bos taurus poly (ADP-ribose) polym... 58 8e-07
AK151393_1(AK151393|pid:none) Mus musculus bone marrow macrophag... 58 1e-06
(Q8CFF0) RecName: Full=Poly [ADP-ribose] polymerase 11; ... 58 1e-06
BC168466_1(BC168466|pid:none) Danio rerio poly (ADP-ribose) poly... 57 1e-06
BC133506_1(BC133506|pid:none) Bos taurus poly (ADP-ribose) polym... 57 1e-06
AK097916_1(AK097916|pid:none) Homo sapiens cDNA FLJ40597 fis, cl... 57 2e-06
BC143573_1(BC143573|pid:none) Homo sapiens poly (ADP-ribose) pol... 57 2e-06
(Q460N3) RecName: Full=Poly [ADP-ribose] polymerase 15; ... 57 2e-06
BX927072_2(BX927072|pid:none) Zebrafish DNA sequence from clone ... 57 2e-06
(Q9NR21) RecName: Full=Poly [ADP-ribose] polymerase 11; ... 56 3e-06
AK299372_1(AK299372|pid:none) Homo sapiens cDNA FLJ52860 complet... 56 3e-06
AC116960_36(AC116960|pid:none) Dictyostelium discoideum chromoso... 56 4e-06
BC028906_1(BC028906|pid:none) Mus musculus poly (ADP-ribose) pol... 53 3e-05
(Q8BZ20) RecName: Full=Poly [ADP-ribose] polymerase 12; ... 53 3e-05
AK156623_1(AK156623|pid:none) Mus musculus activated spleen cDNA... 53 3e-05
(Q9H0J9) RecName: Full=Poly [ADP-ribose] polymerase 12; ... 53 3e-05
AL137255_1(AL137255|pid:none) Homo sapiens mRNA; cDNA DKFZp434B1... 53 3e-05
BC021340_1(BC021340|pid:none) Mus musculus poly (ADP-ribose) pol... 53 3e-05
AK030559_1(AK030559|pid:none) Mus musculus adult male pituitary ... 52 6e-05
BC138874_1(BC138874|pid:none) Mus musculus poly (ADP-ribose) pol... 52 7e-05
AK220263_1(AK220263|pid:none) Mus musculus mRNA for mKIAA1268 pr... 52 7e-05
(Q2EMV9) RecName: Full=Poly [ADP-ribose] polymerase 14; ... 52 7e-05
DQ372930_1(DQ372930|pid:none) Mus musculus collaborator of STAT6... 52 7e-05
(O50017) RecName: Full=Poly [ADP-ribose] polymerase 2; ... 52 7e-05
AF483534_1(AF483534|pid:none) Oncorhynchus mykiss VHSV-induced p... 51 1e-04
(Q0JMY1) RecName: Full=Poly [ADP-ribose] polymerase 2-B; ... 50 2e-04
AP008207_1251(AP008207|pid:none) Oryza sativa (japonica cultivar... 50 2e-04
BT045151_1(BT045151|pid:none) Salmo salar clone ssal-rgf-513-196... 50 2e-04
AK028373_1(AK028373|pid:none) Mus musculus 18 days pregnant adul... 49 4e-04
AK046755_1(AK046755|pid:none) Mus musculus 4 days neonate thymus... 49 4e-04
BC023056_1(BC023056|pid:none) Mus musculus plectin 1, mRNA (cDNA... 49 4e-04
BC025608_1(BC025608|pid:none) Mus musculus plectin 1, mRNA (cDNA... 49 4e-04
BT034831_1(BT034831|pid:none) Zea mays full-length cDNA clone ZM... 49 5e-04
(Q9ZP54) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 46 0.003
(Q5Z8Q9) RecName: Full=Poly [ADP-ribose] polymerase 2-A; ... 46 0.003
BC103482_1(BC103482|pid:none) Danio rerio zgc:113527, mRNA (cDNA... 46 0.003
AP003258_10(AP003258|pid:none) Oryza sativa Japonica Group genom... 46 0.003
(P35875) RecName: Full=Poly [ADP-ribose] polymerase; Sh... 45 0.007
(Q9TXQ1) RecName: Full=Poly(ADP-ribose) polymerase pme-5; ... 45 0.007
AY118947_1(AY118947|pid:none) Drosophila melanogaster LD31274 fu... 45 0.007
(Q11208) RecName: Full=Poly [ADP-ribose] polymerase; Sh... 44 0.012
AK027370_1(AK027370|pid:none) Homo sapiens cDNA FLJ14464 fis, cl... 44 0.012
AM427768_1(AM427768|pid:none) Vitis vinifera contig VV78X161143.... 44 0.012
AF069298_14(AF069298|pid:none) Arabidopsis thaliana BAC T14P8. ... 44 0.012
(Q11207) RecName: Full=Poly [ADP-ribose] polymerase 2; ... 44 0.012
AY815284_1(AY815284|pid:none) Schistosoma japonicum SJCHGC00945 ... 44 0.016
AK128537_1(AK128537|pid:none) Homo sapiens cDNA FLJ46695 fis, cl... 44 0.016
BC132961_1(BC132961|pid:none) Homo sapiens poly (ADP-ribose) pol... 44 0.016
BC014229_1(BC014229|pid:none) Homo sapiens poly (ADP-ribose) pol... 44 0.016
(Q9UGN5) RecName: Full=Poly [ADP-ribose] polymerase 2; ... 44 0.016
BC019030_1(BC019030|pid:none) Homo sapiens poly (ADP-ribose) pol... 44 0.016
AY261883_1(AY261883|pid:none) Ciona intestinalis hypothetical pr... 44 0.020
AF085734_1(AF085734|pid:none) Homo sapiens NAD+ ADP-ribosyltrans... 44 0.020
CS434494_1(CS434494|pid:none) Sequence 12 from Patent WO20060456... 43 0.027
AF072521_1(AF072521|pid:none) Mus musculus poly-(ADPribosyl)-tra... 43 0.035
AP008207_1252(AP008207|pid:none) Oryza sativa (japonica cultivar... 43 0.035
AF499444_1(AF499444|pid:none) Caenorhabditis elegans poly ADP-ri... 43 0.035
(Q9N4H4) RecName: Full=Poly(ADP-ribose) polymerase pme-1; ... 43 0.035
BT045643_1(BT045643|pid:none) Salmo salar clone ssal-rgf-527-212... 42 0.059
T18600(T18600)hypothetical protein AC8.1 - Caenorhabditis elegans 42 0.059
AK290079_1(AK290079|pid:none) Homo sapiens cDNA FLJ75509 complet... 42 0.077
(Q9ZSV1) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 41 0.10
BT070007_1(BT070007|pid:none) Zea mays full-length cDNA clone ZM... 41 0.10
GM894209_1(GM894209|pid:none) Sequence 10 from Patent EP1997899. 41 0.10
AK300971_1(AK300971|pid:none) Homo sapiens cDNA FLJ58629 complet... 41 0.10
AJ222589_1(AJ222589|pid:none) Zea mays mRNA for poly(ADP-ribose)... 41 0.10
(Q7EYV7) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 41 0.13
EU643495_3(EU643495|pid:none) Adineta vaga clone 210B3 endo-xylo... 40 0.17
AK172907_1(AK172907|pid:none) Mus musculus mRNA for mKIAA0177 pr... 40 0.17
AK303340_1(AK303340|pid:none) Homo sapiens cDNA FLJ53442 complet... 40 0.22
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl... 40 0.22
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA... 40 0.22
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 40 0.22
(P31669) RecName: Full=Poly [ADP-ribose] polymerase; Sh... 40 0.22
AK159433_1(AK159433|pid:none) Mus musculus osteoclast-like cell ... 40 0.22
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF... 40 0.22
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym... 40 0.22
M18112_1(M18112|pid:none) Human poly(ADP-ribose) polymerase mRNA... 40 0.22
PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 40 0.22
X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 40 0.22
AB171818_1(AB171818|pid:none) Macaca fascicularis brain cDNA clo... 40 0.22
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 40 0.22
(P18493) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 40 0.22
DQ891636_1(DQ891636|pid:none) Synthetic construct clone IMAGE:10... 40 0.22
(P11103) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 40 0.22
AK169326_1(AK169326|pid:none) Mus musculus 17 days pregnant adul... 40 0.22
(P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 40 0.22
AK167699_1(AK167699|pid:none) Mus musculus 14 days pregnant adul... 40 0.22
AF126717_1(AF126717|pid:none) Mus musculus msPARP mRNA, complete... 40 0.22
AK030889_1(AK030889|pid:none) Mus musculus adult male thymus cDN... 40 0.22
BT071886_1(BT071886|pid:none) Salmo salar clone ssal-rgf-502-010... 40 0.29
DQ679800_1(DQ679800|pid:none) Trypanosoma brucei brucei poly(ADP... 39 0.38
AC104488_2(AC104488|pid:none) Trypanosoma brucei chromosome 5 cl... 39 0.38
AK166104_1(AK166104|pid:none) Mus musculus lung RCB-0558 LLC cDN... 39 0.38
AY347573_1(AY347573|pid:none) Emericella nidulans poly(ADP)-ribo... 39 0.38
AY349148_1(AY349148|pid:none) Emericella nidulans poly(ADP)-ribo... 39 0.38
DQ813662_32(DQ813662|pid:none) Anticarsia gemmatalis nucleopolyh... 39 0.50
BC076765_1(BC076765|pid:none) Xenopus laevis ADP-ribosyltransfer... 39 0.50
EF214849_1(EF214849|pid:none) Callithrix jacchus clone I02-40.3_... 38 0.85
FN357398_4(FN357398|pid:none) Schistosoma mansoni genome sequenc... 37 1.5
CU633446_48(CU633446|pid:none) Podospora anserina genomic DNA ch... 37 1.5
(Q7TN75) RecName: Full=Retrotransposon-derived protein PEG10; Al... 37 1.5
BC045935_1(BC045935|pid:none) Danio rerio poly (ADP-ribose) poly... 37 1.9
BT044952_1(BT044952|pid:none) Salmo salar clone ssal-rgf-508-136... 37 2.5
AX008896_1(AX008896|pid:none) Sequence 5 from Patent WO9964572. ... 36 3.2
AL050034_1(AL050034|pid:none) Homo sapiens mRNA; cDNA DKFZp566G0... 36 3.2
AX008894_1(AX008894|pid:none) Sequence 3 from Patent WO9964572. ... 36 3.2
AF083068_1(AF083068|pid:none) Homo sapiens NAD+ ADP-ribosyltrans... 36 3.2
DQ061295_1(DQ061295|pid:none) Trypanosoma cruzi poly(ADP-ribose)... 36 3.2
AX970253_1(AX970253|pid:none) Sequence 1056 from Patent EP1104808. 36 4.2
AX058340_1(AX058340|pid:none) Sequence 24 from Patent WO0077179.... 36 4.2
(P57740) RecName: Full=Nuclear pore complex protein Nup107; AltN... 36 4.2
BX901896_2(BX901896|pid:none) Zebrafish DNA sequence from clone ... 36 4.2
AF465273_1(AF465273|pid:none) Takifugu rubripes coagulation fact... 35 5.5
BC031073_1(BC031073|pid:none) Homo sapiens poly (ADP-ribose) pol... 35 5.5
AM920427_272(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 35 9.4
BC161791_1(BC161791|pid:none) Xenopus tropicalis hypothetical pr... 35 9.4

>AC116956_27(AC116956|pid:none) Dictyostelium discoideum chromosome 2
map 1418423-1684967 strain AX4, complete sequence.
Length = 610

Score = 539 bits (1389), Expect = e-152
Identities = 255/255 (100%), Positives = 255/255 (100%)
Frame = +3

Query: 690 SIIKCPNTWTDVDSMNYKEVDVKPHENEFQWMSKLFSQTISSNHKGMGTLSPIVFNDLKV 869
SIIKCPNTWTDVDSMNYKEVDVKPHENEFQWMSKLFSQTISSNHKGMGTLSPIVFNDLKV
Sbjct: 343 SIIKCPNTWTDVDSMNYKEVDVKPHENEFQWMSKLFSQTISSNHKGMGTLSPIVFNDLKV 402

Query: 870 TRVVRVQNPMLWVSYHARKQKILDDNNGSCPPIHSVITNIPGSPELDKKANELFLFHGLN 1049
TRVVRVQNPMLWVSYHARKQKILDDNNGSCPPIHSVITNIPGSPELDKKANELFLFHGLN
Sbjct: 403 TRVVRVQNPMLWVSYHARKQKILDDNNGSCPPIHSVITNIPGSPELDKKANELFLFHGLN 462

Query: 1050 VSSVAGIAKFGFDPRFCSLDGMFGAGLYFAENSSKSNQYCHGGACTCSGFQATSCKCKPS 1229
VSSVAGIAKFGFDPRFCSLDGMFGAGLYFAENSSKSNQYCHGGACTCSGFQATSCKCKPS
Sbjct: 463 VSSVAGIAKFGFDPRFCSLDGMFGAGLYFAENSSKSNQYCHGGACTCSGFQATSCKCKPS 522

Query: 1230 DEVCLLVCRVVMGDCLVENVFRGNGPGQFWNGRRTEPKKPNNINIYNSVIGESKPNYGPK 1409
DEVCLLVCRVVMGDCLVENVFRGNGPGQFWNGRRTEPKKPNNINIYNSVIGESKPNYGPK
Sbjct: 523 DEVCLLVCRVVMGDCLVENVFRGNGPGQFWNGRRTEPKKPNNINIYNSVIGESKPNYGPK 582

Query: 1410 AALQLREYIVYESSQ 1454
AALQLREYIVYESSQ
Sbjct: 583 AALQLREYIVYESSQ 597

Score = 218 bits (554), Expect = 6e-55
Identities = 112/137 (81%), Positives = 112/137 (81%)
Frame = +1

Query: 157 VTASNAVXXXXXXXXXXXXXXXXXXXXXXXXXQKKIQWCWAGDSGVGASQDILVEYDSKL 336
VTASNAV QKKIQWCWAGDSGVGASQDILVEYDSKL
Sbjct: 8 VTASNAVTQSSSATTAIPTTINIPVAATAVVAQKKIQWCWAGDSGVGASQDILVEYDSKL 67

Query: 337 NSEIESQYQMHLLKPKVLKYLRFKLDKERYIDFKKMVQTRYDDLNKMRTVERQEIIPGST 516
NSEIESQYQMHLLKPKVLKYLRFKLDKERYIDFKKMVQTRYDDLNKMRTVERQEIIPGST
Sbjct: 68 NSEIESQYQMHLLKPKVLKYLRFKLDKERYIDFKKMVQTRYDDLNKMRTVERQEIIPGST 127

Query: 517 LPPPTTNATSKRRRKII 567
LPPPTTNATSKRRRKII
Sbjct: 128 LPPPTTNATSKRRRKII 144

Score = 62.4 bits (150), Expect = 4e-08
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = +1

Query: 265 QWCWAGDSGVGAS-----QDILVEYDS-KLNSEIESQYQMHLLKPKVLKYLRFKLDKERY 426
+W WAGDSG G S QD+ VEYD + ++E + + K KV DKER+
Sbjct: 183 RWFWAGDSGGGPSKGGGHQDVWVEYDDMNMRKKLEKAFSIGKKKLKV--------DKERF 234

Query: 427 IDFKKMVQTRYDDLNKMRTVERQE 498
+DF+ M+Q RYDD +K R ++R++
Sbjct: 235 VDFQNMLQRRYDDESKRRNLKRED 258

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,006,706,530
Number of extensions: 40283610
Number of successful extensions: 123336
Number of sequences better than 10.0: 151
Number of HSP's gapped: 123003
Number of HSP's successfully gapped: 153
Length of query: 506
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 373
Effective length of database: 614,796,874
Effective search space: 229319234002
Effective search space used: 229319234002
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.88 gvh: 0.53 alm: 0.36 top: 0.33 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.26 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
20.0 %: mitochondrial
16.0 %: extracellular, including cell wall
8.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U11079-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0