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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11056-1
Contig ID Contig-U11056-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11056-1 (Contig-U11056-1Q) /CSM_Contig/Contig-U11056-1Q.Seq.d
ACACAAAAACATTAATGTTTTTCTCACCATTTTATCTTTGTATAAATTTT
TTTTATTTTTTTATTTTATTATATTATACTTCATATAAATAACTATCTCC
AAATGAAATTTTTATTAAAAATTAATTTATTGATCTTTTTTTTTGTGAAT
TCCTGTAACTCACATCACTATGTTGGTATTATCGATGACAATTCTATAAC
TCCAAACATGCAATGGTTTAACGATATTATGTTCATTAGAAGAAACGCCA
ATGGTGCCTGGCCTAGAGTTAATTCTTTTAATTGAAACGGGGTATACTTT
GTTTTCGGGAATATGGCTCCTCATGGATTGACCTTGCTGTATATAGGTAA
AGCATCCCATCAAGATGGGATGGGTTTGTACCACAGAGGTTACTCAGATA
TAGTTGGTCGCCCAAGGTTTTGGGGGACTCCAAATGCAAGACCACTAGAA
ATGGCAAATGCCCAAATTTTAATGTATTATAGAGGTTTTGATGGTCCAGT
TGCTGGTCATGCTGAGTGGTGGTTCCTTTCAGTATTTGGGTGTCCAGAAA
ATAGTTTCAACGAGGGTGGTTTAAGGACATCTGAACACAGTTATGGCGCA
GGTCAATGGAATTTTTTCCATGCAAATGCTCCCCCAGTTAATGTTCGTCA
ATATATTATAAATCAAGATCCATCCCCCGGTTTTTTTTTAGATTTCAAAA
CTATCCATCTGCTCCAAGTATTATAAGAAGAATTGTTGAATGTGAAACTG
AACGATTACACGCTGAAGGTCTTTCAGTTAAAGTTCCTGGTCTTCAAAAT
CAAGTGGTACATTTTCAAAATCAAGTGGTAAATCTTCAAAATGCAAACGA
ACTATTGACAAACTATAATGCTTATTTGGCTGCAGCTCTTCTTAATGCTA
TGCCTCAG----------AAGATGGGATGGGTTTGTACCACAGAGGTTAC
TCAGATATAGTTGGTCGCCCAAGGTTTTGGGGGACTCCAAATGCAAGACC
ACTAGAAATGGCAAATGCCCAAATTTTAATGTATTATAGAGGTTTTGATG
GTCCAGTTGCTGGTCATGCTGAGTGGTTCCTTTCAGTATTTGGGTGCCCA
GAAAATAGTTTCAACGAGGGTGGTTTAAAGGAATCTCAATTTTGTTATGG
TGCAGGTCAATGGAATTTTTTCCATGCAACTGCTCCCGCAGTTAATGTTT
GCCAATATATTATAAATCAAGATCCATCCCCTGGTCTTTTTTTTAGATAT
CCAAACTATCCATCTGCTCCAAGTATTATAAGAAGAATTGTTGATTGTGA
AACTGAACGATTACTCGCTGAAGGTCTTTCACTTCAAGTTCCTGGTCTTC
AAAATCAAGTGTTAAATCTTCAAAATCAAGTGGAAAATCTTCAAAATGCA
AACCAACTATTTGCAAACCCCAAACTTCATTACAACAAGAATCATTAAAA
TTACAATGTACATGCAAACCATTATAAAACAATCGAAAAGTATCGATGAA
GATTTGGTACAAGGAACTAAAAAATGGGAAGAAGCAAGAGAGAAGTATTC
TTTAACTGGAAGTAGATTAGCTGCTGCAATTGGAATTGATCCATACACTT
CACAACATGATTTAAAATTAATATTAGCGAAAAAGAAAACCCCATTCTTT
AGTGACTACTGTAAAAAGGCAATGGAACATGGTAAACACCAAGAACCAAT
AGCAAGAGAATTTTATTTTAATGAATTGGAGACTTCAATTATCGAAAAGG
GTATCTTTCCATTGCCAGGCGACAAAAGAATTGGATGTTCTCCTGATGGG
GTAATTTACACAACAGTACCTGGTAAAGATGGAGTTTTACAGCGTGAAGG
AGTTATTGAAATAAAATGTCCACTATCTACCACGAACTTCAGTGGCCTAA
AGAATGGTAGAAAACCTGATGCCTTAGCTAATGCTCAGAAAATACCTCTA
GATTACATTCCACAAATATTTGCAAACATGGCATGTACTGGGGCACAATG
GTGTGATTATATATGTTGGGTTCCAGGTGAGGTATACTTTTGTAGAAGGG
TATTCTTTGATACAAATGTATTCGTTAGCAAAATTATTTATAGATACACC
TTTAAATGAAATACCTTAAAGAATGAAAAAACATTAATAATAAATACATT
ACTCTTACAGAAACTTAAAGTTTTAAATCCACACCTAAATATTCATGTAC
GAACTAAATTATCATATAGAAAAAAAGTTATAAAAAAAAATAATAAAAAA
TTTCGTNNATTGGGGG
Gap gap included
Contig length 2256
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5957658
End point 5958662
Strand (PLUS/MINUS) PLUS
Number of clones 14
Number of EST 18
Link to clone list U11056
List of clone(s) 

est1=CHL386F,1,381
est2=SHA540F,63,439
est3=CFJ231F,68,637
est4=CFD588F,71,637
est5=AFN861F,73,597
est6=SFF131F,102,648
est7=CHD730F,168,546
est8=SFG383F,336,874
est9=CFA791F,339,906
est10=CHB224F,339,816
est11=SFF771F,345,909
est12=SFJ512E,910,2165
est13=CHD730Z,1409,2155
est14=AFN861Z,1445,2178
est15=SFF131Z,1550,2193
est16=AFC162Z,1560,2176
est17=CFJ231Z,1560,2258
est18=CHC128Z,1648,2176
Translated Amino Acid sequence 
tktlmffspfylcinffyffillyytsyk*lspneifikn*fidlffcefl*ltslcwyy
r*qfynskhamv*ryyvh*kkrqwcla*s*ff*lkrgilcfreygsswidlavyr*sips
rwdgfvpqrllryswspkvlgdskckttrngkcpnfnvl*rf*wsscwsc*vvvpfsiwv
srk*fqrgwfkdi*tqlwrrsmeffpckcsps*CSSIYYKSRSIPRFFFRFQNYPSAPSI
IRRIVECETERLHAEGLSVKVPGLQNQVVHFQNQVVNLQNANELLTNYNAYLAAALLNAM
PQ---

---DGMGLYHRGYSDIVGRPRFWGTPNARPLEMANAQILMYYRGFDGPVAGHAEWFLSVF
GCPENSFNEGGLKESQFCYGAGQWNFFHATAPAVNVCQYIINQDPSPGLFFRYPNYPSAP
SIIRRIVDCETERLLAEGLSLQVPGLQNQVLNLQNQVENLQNANQLFANPKLHYNKNH*n
ynvhanhyktiekyr*rfgtrn*kmgrskrevffnwk*isccnwn*sihftt*fkinise
kenpil**ll*kgngtw*tprtnskrilf**igdfnyrkgylsiarrqknwmfs*wgnlh
nstw*rwsfta*rsy*nkmstiyhelqwpkew*kt*cls*csentsrlhstnickhgmyw
gtmv*lymlgsr*gill*kgil*ykcir*qnyl*ihl*mkylke*kninnkyitltet*s
fkstpkysctn*iii*kksykkk**kisxig
Translated Amino Acid sequence (All Frames) 
Frame A:
tqkh*cfshhfifv*iffiflfyyiilhinnylqmkfllkinllifffvnscnshhyvgi
iddnsitpnmqwfndimfirrnangawprvnsfn*ngvyfvfgnmaphgltllyigkash
qdgmglyhrgysdivgrprfwgtpnarplemanaqilmyyrgfdgpvaghaewwflsvfg
cpensfnegglrtsehsygagqwnffhanappvnvrqyiinqdpspgffldfktihllqv
l*eellnvklndytlkvfqlkflvfkikwyifkikw*ifkmqtny*qtimliwlqlflml
cl---

---kmgwvcttevtqi*lvaqgfgglqmqdh*kwqmpkf*ciievlmvqllvmlsgsfqy
lgaqkivstrvv*rnlnfvmvqvngifsmqllpqlmfanil*ikihplvffldiqtihll
qvl*eellivklndyslkvfhfkflvfkikc*ifkikwkifkmqtnylqtpnfittriik
itmymqtiikqsksidedlvqgtkkweearekysltgsrlaaaigidpytsqhdlklila
kkktpffsdyckkamehgkhqepiarefyfneletsiiekgifplpgdkrigcspdgviy
ttvpgkdgvlqregvieikcplsttnfsglkngrkpdalanaqkipldyipqifanmact
gaqwcdyicwvpgevyfcrrvffdtnvfvskiiyrytfk*ntlknektliintlllqklk
vlnphlnihvrtklsyrkkvikknnkkfrxlg

Frame B:
hkninvfltilslykfflffyfiilyfi*itisk*nfy*kliy*sffl*ipvthitmlvl
smtil*lqtcngltilcsleetpmvpglelillietgytlfsgiwllmd*pcci*vkhpi
kmgwvcttevtqi*lvaqgfgglqmqdh*kwqmpkf*ciievlmvqllvmlsggsfqylg
vqkivstrvv*ghlntvmaqvngifsmqmlpqlmfvnil*ikihppvff*isklsicsky
ykknc*m*n*titr*rsfs*sswsskssgtfskssgksskckrtidkl*clfgcsss*cy
as---

---rwdgfvpqrllryswspkvlgdskckttrngkcpnfnvl*rf*wsscwsc*vvpfsi
wvprk*fqrgwfkgisillwcrsmeffpcncsrs*clpiyyksrsipwsff*isklsics
kyykknc*l*n*titr*rsftssswsskssvksskssgksskckptickpqtslqqeslk
lqctckpl*nnrkvsmkiwykelkngkkqersil*levd*llqlelihtlhnmi*n*y*r
krkphslvttvkrqwnmvntknq*qenfilmnwrlqlskrvsfhcqatkeldvllmg*ft
qqylvkmefysvkellk*nvhylprtsva*rmvenlmp*lmlrkyl*itfhkylqtwhvl
ghngviiyvgfqvrytfvegysliqmyslaklfidtplneip*rmkkh***ihysyrnlk
f*iht*ifmyelnyhiekkl*kkiiknfvxwg

Frame C:
tktlmffspfylcinffyffillyytsyk*lspneifikn*fidlffcefl*ltslcwyy
r*qfynskhamv*ryyvh*kkrqwcla*s*ff*lkrgilcfreygsswidlavyr*sips
rwdgfvpqrllryswspkvlgdskckttrngkcpnfnvl*rf*wsscwsc*vvvpfsiwv
srk*fqrgwfkdi*tqlwrrsmeffpckcsps*CSSIYYKSRSIPRFFFRFQNYPSAPSI
IRRIVECETERLHAEGLSVKVPGLQNQVVHFQNQVVNLQNANELLTNYNAYLAAALLNAM
PQ---

---DGMGLYHRGYSDIVGRPRFWGTPNARPLEMANAQILMYYRGFDGPVAGHAEWFLSVF
GCPENSFNEGGLKESQFCYGAGQWNFFHATAPAVNVCQYIINQDPSPGLFFRYPNYPSAP
SIIRRIVDCETERLLAEGLSLQVPGLQNQVLNLQNQVENLQNANQLFANPKLHYNKNH*n
ynvhanhyktiekyr*rfgtrn*kmgrskrevffnwk*isccnwn*sihftt*fkinise
kenpil**ll*kgngtw*tprtnskrilf**igdfnyrkgylsiarrqknwmfs*wgnlh
nstw*rwsfta*rsy*nkmstiyhelqwpkew*kt*cls*csentsrlhstnickhgmyw
gtmv*lymlgsr*gill*kgil*ykcir*qnyl*ihl*mkylke*kninnkyitltet*s
fkstpkysctn*iii*kksykkk**kisxig
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11056-1 (Contig-U11056-1Q)
/CSM_Contig/Contig-U11056-1Q.Seq.d
         (2266 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11056-1 (Contig-U11056-1Q) /CSM_Contig/Conti...  4052  0.0
Contig-U14170-1 (Contig-U14170-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U07993-1 (Contig-U07993-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U06280-1 (Contig-U06280-1Q) /CSM_Contig/Conti...    38  0.041
Contig-U09517-1 (Contig-U09517-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U06775-1 (Contig-U06775-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Conti...    34  0.64
Contig-U14847-1 (Contig-U14847-1Q) /CSM_Contig/Conti...    34  0.64
Contig-U11520-1 (Contig-U11520-1Q) /CSM_Contig/Conti...    30  10.0

>Contig-U11056-1 (Contig-U11056-1Q) /CSM_Contig/Contig-U11056-1Q.Seq.d
          Length = 2266

 Score = 4052 bits (2044), Expect = 0.0
 Identities = 2126/2152 (98%)
 Strand = Plus / Plus

                                                                        
Query: 68   attatattatacttcatataaataactatctccaaatgaaatttttattaaaaattaatt 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68   attatattatacttcatataaataactatctccaaatgaaatttttattaaaaattaatt 127

                                                                        
Query: 128  tattgatcnnnnnnnnngtgaattcctgtaactcacatcactatgttggtattatcgatg 187
            ||||||||         |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128  tattgatctttttttttgtgaattcctgtaactcacatcactatgttggtattatcgatg 187

                                                                        
Query: 188  acaattctataactccaaacatgcaatggtttaacgatattatgttcattagaagaaacg 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188  acaattctataactccaaacatgcaatggtttaacgatattatgttcattagaagaaacg 247

                                                                        
Query: 248  ccaatggtgcctggcctagagttaattcttttaattgaaacggggtatactttgttttcg 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248  ccaatggtgcctggcctagagttaattcttttaattgaaacggggtatactttgttttcg 307

                                                                        
Query: 308  ggaatatggctcctcatggattgaccttgctgtatataggtaaagcatcccatcaagatg 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308  ggaatatggctcctcatggattgaccttgctgtatataggtaaagcatcccatcaagatg 367

                                                                        
Query: 368  ggatgggtttgtaccacagaggttactcagatatagttggtcgcccaaggttttggggga 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368  ggatgggtttgtaccacagaggttactcagatatagttggtcgcccaaggttttggggga 427

                                                                        
Query: 428  ctccaaatgcaagaccactagaaatggcaaatgcccaaattttaatgtattatagaggtt 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428  ctccaaatgcaagaccactagaaatggcaaatgcccaaattttaatgtattatagaggtt 487

                                                                        
Query: 488  ttgatggtccagttgctggtcatgctgagtggtggttcctttcagtatttgggtgtccag 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488  ttgatggtccagttgctggtcatgctgagtggtggttcctttcagtatttgggtgtccag 547

                                                                        
Query: 548  aaaatagtttcaacgagggtggtttaaggacatctgaacacagttatggcgcaggtcaat 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548  aaaatagtttcaacgagggtggtttaaggacatctgaacacagttatggcgcaggtcaat 607

                                                                        
Query: 608  ggaattttttccatgcaaatgctcccccagttaatgttcgtcaatatattataaatcaag 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  ggaattttttccatgcaaatgctcccccagttaatgttcgtcaatatattataaatcaag 667

                                                                        
Query: 668  atccatcccccggnnnnnnnnnagatttcaaaactatccatctgctccaagtattataag 727
            |||||||||||||         ||||||||||||||||||||||||||||||||||||||
Sbjct: 668  atccatcccccggtttttttttagatttcaaaactatccatctgctccaagtattataag 727

                                                                        
Query: 728  aagaattgttgaatgtgaaactgaacgattacacgctgaaggtctttcagttaaagttcc 787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  aagaattgttgaatgtgaaactgaacgattacacgctgaaggtctttcagttaaagttcc 787

                                                                        
Query: 788  tggtcttcaaaatcaagtggtacattttcaaaatcaagtggtaaatcttcaaaatgcaaa 847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  tggtcttcaaaatcaagtggtacattttcaaaatcaagtggtaaatcttcaaaatgcaaa 847

                                                                        
Query: 848  cgaactattgacaaactataatgcttatttggctgcagctcttcttaatgctatgcctca 907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  cgaactattgacaaactataatgcttatttggctgcagctcttcttaatgctatgcctca 907

                                                                        
Query: 908  gnnnnnnnnnnaagatgggatgggtttgtaccacagaggttactcagatatagttggtcg 967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  gnnnnnnnnnnaagatgggatgggtttgtaccacagaggttactcagatatagttggtcg 967

                                                                        
Query: 968  cccaaggttttgggggactccaaatgcaagaccactagaaatggcaaatgcccaaatttt 1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  cccaaggttttgggggactccaaatgcaagaccactagaaatggcaaatgcccaaatttt 1027

                                                                        
Query: 1028 aatgtattatagaggttttgatggtccagttgctggtcatgctgagtggttcctttcagt 1087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 aatgtattatagaggttttgatggtccagttgctggtcatgctgagtggttcctttcagt 1087

                                                                        
Query: 1088 atttgggtgcccagaaaatagtttcaacgagggtggtttaaaggaatctcaattttgtta 1147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 atttgggtgcccagaaaatagtttcaacgagggtggtttaaaggaatctcaattttgtta 1147

                                                                        
Query: 1148 tggtgcaggtcaatggaattttttccatgcaactgctcccgcagttaatgtttgccaata 1207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 tggtgcaggtcaatggaattttttccatgcaactgctcccgcagttaatgtttgccaata 1207

                                                                        
Query: 1208 tattataaatcaagatccatcccctggtcnnnnnnnnagatatccaaactatccatctgc 1267
            |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 1208 tattataaatcaagatccatcccctggtcttttttttagatatccaaactatccatctgc 1267

                                                                        
Query: 1268 tccaagtattataagaagaattgttgattgtgaaactgaacgattactcgctgaaggtct 1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 tccaagtattataagaagaattgttgattgtgaaactgaacgattactcgctgaaggtct 1327

                                                                        
Query: 1328 ttcacttcaagttcctggtcttcaaaatcaagtgttaaatcttcaaaatcaagtggaaaa 1387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 ttcacttcaagttcctggtcttcaaaatcaagtgttaaatcttcaaaatcaagtggaaaa 1387

                                                                        
Query: 1388 tcttcaaaatgcaaaccaactatttgcaaaccccaaacttcattacaacaagaatcatta 1447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 tcttcaaaatgcaaaccaactatttgcaaaccccaaacttcattacaacaagaatcatta 1447

                                                                        
Query: 1448 aaattacaatgtacatgcaaaccattataaaacaatcgaaaagtatcgatgaagatttgg 1507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448 aaattacaatgtacatgcaaaccattataaaacaatcgaaaagtatcgatgaagatttgg 1507

                                                                        
Query: 1508 tacaaggaactaaaaaatgggaagaagcaagagagaagtattctttaactggaagtagat 1567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 tacaaggaactaaaaaatgggaagaagcaagagagaagtattctttaactggaagtagat 1567

                                                                        
Query: 1568 tagctgctgcaattggaattgatccatacacttcacaacatgatttaaaattaatattag 1627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 tagctgctgcaattggaattgatccatacacttcacaacatgatttaaaattaatattag 1627

                                                                        
Query: 1628 cgaaaaagaaaaccccattctttagtgactactgtaaaaaggcaatggaacatggtaaac 1687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1628 cgaaaaagaaaaccccattctttagtgactactgtaaaaaggcaatggaacatggtaaac 1687

                                                                        
Query: 1688 accaagaaccaatagcaagagaattttattttaatgaattggagacttcaattatcgaaa 1747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1688 accaagaaccaatagcaagagaattttattttaatgaattggagacttcaattatcgaaa 1747

                                                                        
Query: 1748 agggtatctttccattgccaggcgacaaaagaattggatgttctcctgatggggtaattt 1807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1748 agggtatctttccattgccaggcgacaaaagaattggatgttctcctgatggggtaattt 1807

                                                                        
Query: 1808 acacaacagtacctggtaaagatggagttttacagcgtgaaggagttattgaaataaaat 1867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1808 acacaacagtacctggtaaagatggagttttacagcgtgaaggagttattgaaataaaat 1867

                                                                        
Query: 1868 gtccactatctaccacgaacttcagtggcctaaagaatggtagaaaacctgatgccttag 1927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1868 gtccactatctaccacgaacttcagtggcctaaagaatggtagaaaacctgatgccttag 1927

                                                                        
Query: 1928 ctaatgctcagaaaatacctctagattacattccacaaatatttgcaaacatggcatgta 1987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1928 ctaatgctcagaaaatacctctagattacattccacaaatatttgcaaacatggcatgta 1987

                                                                        
Query: 1988 ctggggcacaatggtgtgattatatatgttgggttccaggtgaggtatacttttgtagaa 2047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1988 ctggggcacaatggtgtgattatatatgttgggttccaggtgaggtatacttttgtagaa 2047

                                                                        
Query: 2048 gggtattctttgatacaaatgtattcgttagcaaaattatttatagatacacctttaaat 2107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2048 gggtattctttgatacaaatgtattcgttagcaaaattatttatagatacacctttaaat 2107

                                                                        
Query: 2108 gaaataccttaaagaatgaaaaaacattaataataaatacattactcttacagaaactta 2167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2108 gaaataccttaaagaatgaaaaaacattaataataaatacattactcttacagaaactta 2167

                                                                
Query: 2168 aagttttaaatccacacctaaatattcatgtacgaactaaattatcatatag 2219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2168 aagttttaaatccacacctaaatattcatgtacgaactaaattatcatatag 2219


 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                        
Query: 1  acacaaaaacattaatgtttttctcaccattttatctttgtataaa 46
          ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acacaaaaacattaatgtttttctcaccattttatctttgtataaa 46


 Score = 36.2 bits (18), Expect = 0.16
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 5  aaaaacattaatgttttt 22
          ||||||||||||||||||
Sbjct: 22 aaaaacattaatgttttt 5


>Contig-U14170-1 (Contig-U14170-1Q) /CSM_Contig/Contig-U14170-1Q.Seq.d
          Length = 1167

 Score = 40.1 bits (20), Expect = 0.010
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 820 atcaagtggtaaatcttcaa 839
           ||||||||||||||||||||
Sbjct: 635 atcaagtggtaaatcttcaa 654


 Score = 32.2 bits (16), Expect = 2.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 1354 atcaagtgttaaatcttcaa 1373
            |||||||| |||||||||||
Sbjct: 635  atcaagtggtaaatcttcaa 654


>Contig-U07993-1 (Contig-U07993-1Q) /CSM_Contig/Contig-U07993-1Q.Seq.d
          Length = 1998

 Score = 40.1 bits (20), Expect = 0.010
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  tctccaaatgaaatttttat 115
           ||||||||||||||||||||
Sbjct: 583 tctccaaatgaaatttttat 564


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,504
Number of Sequences: 6905
Number of extensions: 26504
Number of successful extensions: 2518
Number of sequences better than 10.0: 232
length of query: 2266
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2250
effective length of database: 5,564,391
effective search space: 12519879750
effective search space used: 12519879750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U11056-1 (Contig-U11056-1Q) /CSM_Contig/Contig-U11056-1Q.Seq.d
         (2266 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ376654) Dictyostelium discoideum cDNA clone:ddc29l07, 3' ...  1405   0.0    2
(BJ345727) Dictyostelium discoideum cDNA clone:dda28j16, 3' ...  1405   0.0    1
(BJ401992) Dictyostelium discoideum cDNA clone:dds20g03, 3' ...  1378   0.0    2
(BJ375632) Dictyostelium discoideum cDNA clone:ddc19m08, 3' ...  1291   0.0    1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...  1132   0.0    4
(BJ398193) Dictyostelium discoideum cDNA clone:dds11m07, 3' ...  1124   0.0    3
(BJ341203) Dictyostelium discoideum cDNA clone:dda5k15, 3' e...  1086   0.0    2
(BJ389792) Dictyostelium discoideum cDNA clone:dds20g03, 5' ...   630   0.0    2
(BJ377892) Dictyostelium discoideum cDNA clone:ddc26g07, 3' ...  1001   0.0    1
(BJ360990) Dictyostelium discoideum cDNA clone:ddc8o21, 5' e...   745   0.0    4
(BJ361939) Dictyostelium discoideum cDNA clone:ddc19m08, 5' ...   729   0.0    4
(BJ386924) Dictyostelium discoideum cDNA clone:dds11m07, 5' ...   737   0.0    5
(BJ328554) Dictyostelium discoideum cDNA clone:dda28j16, 5' ...   739   0.0    3
(BJ387179) Dictyostelium discoideum cDNA clone:dds12n17, 5' ...   490   0.0    2
(BJ359829) Dictyostelium discoideum cDNA clone:ddc2f23, 5' e...   496   0.0    2
(BJ391422) Dictyostelium discoideum cDNA clone:dds13f21, 5' ...   502   0.0    2
(BJ362936) Dictyostelium discoideum cDNA clone:ddc24o06, 5' ...   496   0.0    2
(BJ363983) Dictyostelium discoideum cDNA clone:ddc29l07, 5' ...   611   e-178  2
(BJ391852) Dictyostelium discoideum cDNA clone:dds25o09, 5' ...   531   e-174  2
(BJ367940) Dictyostelium discoideum cDNA clone:ddc44l21, 5' ...   424   e-163  3
(AM442810) Vitis vinifera contig VV78X115880.4, whole genome...    54   0.024  1
(CT547390) A BAC library has been constructed from cultivar ...    54   0.024  1
(AC224640) Bos taurus clone CH240-479M3, WORKING DRAFT SEQUE...    40   0.024  9
(AM449429) Vitis vinifera contig VV78X145928.1, whole genome...    52   0.095  1
(AM428673) Vitis vinifera contig VV78X085159.8, whole genome...    52   0.095  1
(AM427156) Vitis vinifera contig VV78X221789.10, whole genom...    52   0.095  1
(DX516844) 763_5_14177422_16654_43717_008 Arachis hypogaea m...    52   0.095  1
(CU811821) A BAC library has been constructed from PN40024 g...    52   0.095  1
(CU753679) A BAC library has been constructed from PN40024 g...    52   0.095  1
(EA048112) Sequence 3 from patent US 7154021.                      50   0.37   1
(EA048111) Sequence 2 from patent US 7154021.                      50   0.37   1
(AX196296) Sequence 3 from Patent WO0151627.                       50   0.37   1
(AX196295) Sequence 2 from Patent WO0151627.                       50   0.37   1
(AC141184) Rattus norvegicus clone CH230-366F15, WORKING DRA...    50   0.37   1
(AC131199) Rattus norvegicus clone CH230-100C19, WORKING DRA...    50   0.37   1
(AC098228) Rattus norvegicus clone CH230-58K21, WORKING DRAF...    50   0.37   1
(AP010010) Lotus japonicus genomic DNA, clone: LjT33K05, TM0...    50   0.37   1
(BM181591) fw43h09.y1 Zebrafish SJD day 3 embryo Danio rerio...    42   0.49   2
(BM342642) fw46d04.y1 Zebrafish SJD day 3 embryo Danio rerio...    42   0.50   2
(BM341735) fw52b11.y1 Zebrafish SJD day 3 embryo Danio rerio...    42   0.50   2
(AL906599) Danio rerio EST sequence, clone 132-C09-1.              44   0.51   2
(BM532707) fx40e02.y1 Zebrafish SJD 15 day embryo Danio reri...    42   0.62   2
(EH581559) FDR306-P00009-DEPE-F_J10 FDR306 Danio rerio cDNA ...    42   0.69   2
(BM812086) fx14c03.y1 Zebrafish SJD day 3 embryo Danio rerio...    42   0.69   2
(EH479888) FDR103-P00062-DEPE-R_P09 FDR103 Danio rerio cDNA ...    42   0.71   2
(CN841022) AGENCOURT_24274229 NIH_ZGC_18 Danio rerio cDNA cl...    42   0.74   2
(AL906618) Danio rerio EST sequence, clone 023-A02-1.              42   0.91   2
(EE707837) AGENCOURT_90090100 NIH_ZGC_29 Danio rerio cDNA cl...    42   0.92   2
(AL906552) Danio rerio EST sequence, clone 197-B07-1.              42   0.92   2
(AL906571) Danio rerio EST sequence, clone 043-F12-1.              42   0.92   2
(AC217144) Solanum lycopersicum chromosome 9 clone C09SLm000...    36   1.0    8
(ER466341) 1092963924771 Global-Ocean-Sampling_GS-35-01-01-1...    38   1.1    3
(AL906629) Danio rerio EST sequence, clone 041-H11-1.              42   1.1    2
(AL906605) Danio rerio EST sequence, clone 126-E08-1.              42   1.1    2
(CT583676) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.2    6
(AL906574) Danio rerio EST sequence, clone 109-C11-1.              42   1.2    2
(AL906555) Danio rerio EST sequence, clone 095-C12-1.              42   1.2    2
(AL906575) Danio rerio EST sequence, clone 051-A09-1.              42   1.3    2
(AL906557) Danio rerio EST sequence, clone 104-G12-1.              42   1.3    2
(CK712889) ZF201-P00022-DEPE-F_M23 GISZF001_ma Danio rerio c...    42   1.3    2
(EB860676) 4298771 ZF03 Danio rerio cDNA clone 2094418, mRNA...    42   1.3    2
(EB986981) 15944439 ZF42 Danio rerio cDNA clone 4279861, mRN...    42   1.3    2
(AL906641) Danio rerio EST sequence, clone 038-H05-1.              42   1.3    2
(EE709948) AGENCOURT_89003777 NIH_ZGC_27 Danio rerio cDNA cl...    42   1.3    2
(AL906596) Danio rerio EST sequence, clone 032-G08-1.              42   1.4    2
(AL906591) Danio rerio EST sequence, clone 039-H08-1.              42   1.4    2
(AL906581) Danio rerio EST sequence, clone 058-D10-1.              42   1.4    2
(AL906584) Danio rerio EST sequence, clone 031-G12-1.              42   1.4    2
(AL906585) Danio rerio EST sequence, clone 095-F07-1.              42   1.4    2
(AL906578) Danio rerio EST sequence, clone 090-B10-1.              42   1.4    2
(AL906568) Danio rerio EST sequence, clone 089-B03-1.              42   1.4    2
(AL906580) Danio rerio EST sequence, clone 108-E01-1.              42   1.4    2
(EE685657) AGENCOURT_90006953 NIH_ZGC_29 Danio rerio cDNA cl...    42   1.4    2
(AL906565) Danio rerio EST sequence, clone 043-C10-1.              42   1.4    2
(AL906558) Danio rerio EST sequence, clone 103-B05-1.              42   1.4    2
(AL906556) Danio rerio EST sequence, clone 108-C05-1.              42   1.4    2
(BM533085) fx65g08.y1 Zebrafish SJD 5 day embryo Danio rerio...    42   1.4    2
(DY549212) AGENCOURT_69665378 NIH_ZGC_27 Danio rerio cDNA cl...    42   1.5    2
(EB869027) 6769522 ZF03 Danio rerio cDNA clone 2587640, mRNA...    42   1.5    2
(BM572585) fx55a09.y1 Zebrafish SJD 5 day embryo Danio rerio...    42   1.5    2
(CR318606) Zebrafish DNA sequence from clone CH211-207N1 in ...    48   1.5    1
(BX120011) Zebrafish DNA sequence from clone DKEY-18O5 in li...    48   1.5    1
(AX347045) Sequence 2116 from Patent WO0200928.                    48   1.5    1
(EU237485) Igernella notabilis mitochondrion, complete genome.     48   1.5    1
(AC151646) Dasypus novemcinctus clone VMRC5-242D2, WORKING D...    48   1.5    1
(CU183096) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   1.5    1
(AC182544) Dasypus novemcinctus clone VMRC5-132L2, WORKING D...    48   1.5    1
(AZ546997) ENTGD78TR Entamoeba histolytica Sheared DNA Entam...    48   1.5    1
(DU931795) 356033 Tomato EcoRI BAC Library Solanum lycopersi...    48   1.5    1
(CT953444) Equus caballus GSS, BAC clone CH241-29N8, SP6 end...    48   1.5    1
(EE706997) AGENCOURT_90073762 NIH_ZGC_29 Danio rerio cDNA cl...    42   1.5    2
(AL906604) Danio rerio EST sequence, clone 139-A06-1.              42   1.5    2
(AL906550) Danio rerio EST sequence, clone 016-B06-1.              42   1.5    2
(DY552202) AGENCOURT_69714666 NIH_ZGC_29 Danio rerio cDNA cl...    42   1.5    2
(AL906598) Danio rerio EST sequence, clone 142-A12-1.              42   1.5    2
(CK684955) ZF101-P00036-DEPE-F2_A15 GISZF001_ra Danio rerio ...    42   1.5    2
(AL906583) Danio rerio EST sequence, clone 090-D09-1.              42   1.5    2
(BM530618) fx51h07.y1 Zebrafish SJD 5 day embryo Danio rerio...    42   1.5    2
(EE696210) AGENCOURT_88917574 NIH_ZGC_28 Danio rerio cDNA cl...    42   1.5    2
(EE314675) AGENCOURT_85422354 NIH_ZGC_29 Danio rerio cDNA cl...    42   1.5    2

>(BJ376654) Dictyostelium discoideum cDNA clone:ddc29l07, 3' end,
            single read.
          Length = 746

 Score = 1405 bits (709), Expect(2) = 0.0
 Identities = 712/713 (99%)
 Strand = Plus / Minus


Query: 1418 ccccaaacttcattacaacaagaatcattaaaattacaatgtacatgcaaaccattataa 1477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746  ccccaaacttcattacaacaagaatcattaaaattacaatgtacatgcaaaccattataa 687


Query: 1478 aacaatcgaaaagtatcgatgaagatttggtacaaggaactaaaaaatgggaagaagcaa 1537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  aacaatcgaaaagtatcgatgaagatttggtacaaggaactaaaaaatgggaagaagcaa 627


Query: 1538 gagagaagtattctttaactggaagtagattagctgctgcaattggaattgatccataca 1597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  gagagaagtattctttaactggaagtagattagctgctgcaattggaattgatccataca 567


Query: 1598 cttcacaacatgatttaaaattaatattagcgaaaaagaaaaccccattctttagtgact 1657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  cttcacaacatgatttaaaattaatattagcgaaaaagaaaaccccattctttagtgact 507


Query: 1658 actgtaaaaaggcaatggaacatggtaaacaccaagaaccaatagcaagagaattttatt 1717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506  actgtaaaaaggcaatggaacatggtaaacaccaagaaccaatagcaagagaattttatt 447


Query: 1718 ttaatgaattggagacttcaattatcgaaaagggtatctttccattgccaggcgacaaaa 1777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446  ttaatgaattggagacttcaattatcgaaaagggtatctttccattgccaggcgacaaaa 387


Query: 1778 gaattggatgttctcctgatggggtaatttacacaacagtacctggtaaagatggagttt 1837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386  gaattggatgttctcctgatggggtaatttacacaacagtacctggtaaagatggagttt 327


Query: 1838 tacagcgtgaaggagttattgaaataaaatgtccactatctaccacgaacttcagtggcc 1897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326  tacagcgtgaaggagttattgaaataaaatgtccactatctaccacgaacttcagtggcc 267


Query: 1898 taaagaatggtagaaaacctgatgccttagctaatgctcagaaaatacctctagattaca 1957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266  taaagaatggtagaaaacctgatgccttagctaatgctcagaaaatacctctagattaca 207


Query: 1958 ttccacaaatatttgcaaacatggcatgtactggggcacaatggtgtgattatatatgtt 2017
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206  ttccacaaatatttgcaaacatggcatgtactggggcacaatggtgtgattatatatgtt 147


Query: 2018 gggttccaggtgaggtatacttttgtagaagggtattctttgatacaaatgtattcgtta 2077
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146  gggttccaggtgaggtatacttttgtagaagggtattctttgatacaaatgtattcgtta 87


Query: 2078 gcaaaattatttatagatacacctttaaatgaaataccttaaagaatgaaaaa 2130
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 86   gcaaaattatttatagatacacctttaaatgaaataccttaaagaataaaaaa 34

 Score = 71.9 bits (36), Expect(2) = 0.0
 Identities = 38/39 (97%)
 Strand = Plus / Minus


Query: 2126 aaaaaacattaataataaatacattactcttacagaaac 2164
            ||||||||||||||||||||||||||| |||||||||||
Sbjct: 39   aaaaaacattaataataaatacattacncttacagaaac 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,611,052,687
Number of extensions: 156268109
Number of successful extensions: 12529727
Number of sequences better than 10.0: 718
Length of query: 2266
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2242
Effective length of database: 97,308,875,965
Effective search space: 218166499913530
Effective search space used: 218166499913530
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11056-1 (Contig-U11056-1Q) /CSM_Contig/Contig-U11056-1Q.Seq.d
         (2266 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001154_1490(CP001154|pid:none) Laribacter hongkongensis HLHK9,...    75   1e-11
BX640412_161(BX640412|pid:none) Bordetella pertussis strain Toha...    72   7e-11
BX640443_240(BX640443|pid:none) Bordetella bronchiseptica strain...    72   7e-11
CP001349_3671(CP001349|pid:none) Methylobacterium nodulans ORS 2...    69   6e-10
CP001277_1425(CP001277|pid:none) Candidatus Hamiltonella defensa...    66   5e-09
CP001001_5658(CP001001|pid:none) Methylobacterium radiotolerans ...    65   1e-08
AP006628_71(AP006628|pid:none) Onion yellows phytoplasma OY-M DN...    64   2e-08
BX897699_671(BX897699|pid:none) Bartonella henselae strain Houst...    64   3e-08
BT061486_1(BT061486|pid:none) Zea mays full-length cDNA clone ZM...    62   7e-08
CP000061_182(CP000061|pid:none) Aster yellows witches'-broom phy...    62   1e-07
BX897699_370(BX897699|pid:none) Bartonella henselae strain Houst...    60   3e-07
AP006628_518(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    60   4e-07
DQ111953_6(DQ111953|pid:none) Phytoplasma sp. CPh FliA (fliA) ge...    60   4e-07
CP000061_223(CP000061|pid:none) Aster yellows witches'-broom phy...    58   1e-06
AP006628_391(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    58   1e-06
AP006628_345(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    58   1e-06
AM260525_507(AM260525|pid:none) Bartonella tribocorum CIP 105476...    57   2e-06
EF200535_4(EF200535|pid:none) Malaysian periwinkle yellows phyto...    57   2e-06
AM260525_1821(AM260525|pid:none) Bartonella tribocorum CIP 10547...    56   5e-06
AC068197_4(AC068197|pid:none) Genomic sequence for Arabidopsis t...    55   8e-06
AY735513_1(AY735513|pid:none) Arabidopsis thaliana hypothetical ...    55   8e-06
AP004705_7(AP004705|pid:none) Oryza sativa Japonica Group genomi...    55   1e-05
AP008214_566(AP008214|pid:none) Oryza sativa (japonica cultivar-...    55   1e-05
AM422018_328(AM422018|pid:none) Candidatus Phytoplasma australie...    55   1e-05
AM260525_332(AM260525|pid:none) Bartonella tribocorum CIP 105476...    54   2e-05
AL606623_20(AL606623|pid:none) Oryza sativa genomic DNA, chromos...    54   2e-05
CP000061_113(CP000061|pid:none) Aster yellows witches'-broom phy...    53   4e-05
AM260525_376(AM260525|pid:none) Bartonella tribocorum CIP 105476...    53   5e-05
CP000884_1908(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    51   2e-04
EU304328_144(EU304328|pid:none) Ostreococcus virus OsV5, complet...    49   6e-04
(Q5UQV1) RecName: Full=Uncharacterized protein R354;  &AY653733_...    47   0.003
DQ491002_214(DQ491002|pid:none) Paramecium bursaria Chlorella vi...    47   0.003
CU469464_63(CU469464|pid:none) Candidatus Phytoplasma mali strai...    47   0.004
DQ491003_200(DQ491003|pid:none) Paramecium bursaria Chlorella vi...    45   0.011
AK118996_1(AK118996|pid:none) Arabidopsis thaliana At1g67660 mRN...    45   0.011
CU469464_402(CU469464|pid:none) Candidatus Phytoplasma mali stra...    45   0.015
EU016565_31(EU016565|pid:none) Uncultured marine microorganism H...    44   0.025
CP001277_1786(CP001277|pid:none) Candidatus Hamiltonella defensa...    43   0.057
CP000926_3431(CP000926|pid:none) Pseudomonas putida GB-1, comple...    42   0.074
AM076770_92(AM076770|pid:none) Bacteriophage PY100.                    42   0.13
AP008957_2287(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    41   0.21
AE009442_967(AE009442|pid:none) Xylella fastidiosa Temecula1, co...    40   0.48
CU468230_934(CU468230|pid:none) Acinetobacter baumannii str. SDF...    39   0.82
CU468230_1673(CU468230|pid:none) Acinetobacter baumannii str. SD...    39   0.82
CU469464_249(CU469464|pid:none) Candidatus Phytoplasma mali stra...    39   1.1
AF165214_51(AF165214|pid:none) Bacteriophage D3, complete genome.      39   1.1
EF460875_62(EF460875|pid:none) Enterobacteria phage phiEcoM-GJ1,...    39   1.1
AJ970542_3(AJ970542|pid:none) Candidatus Phytoplasma solani sola...    38   1.8
AY954954_16(AY954954|pid:none) Bacteriophage 2638A, complete gen...    37   4.1
BX571868_267(BX571868|pid:none) Photorhabdus luminescens subsp. ...    36   5.3
CT005269_157(CT005269|pid:none) Leishmania major strain Friedlin...    36   5.3
CP001321_1062(CP001321|pid:none) Haemophilus parasuis SH0165, co...    36   5.3
AP000422_15(AP000422|pid:none) Enterobacteria phage VT2-Sakai ge...    36   6.9
AP000363_13(AP000363|pid:none) Enterobacteria phage VT2-Sakai pr...    36   6.9

>CP001154_1490(CP001154|pid:none) Laribacter hongkongensis HLHK9,
            complete genome.
          Length = 203

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 59/191 (30%), Positives = 87/191 (45%), Gaps = 10/191 (5%)
 Frame = +1

Query: 1510 QGTKKWEEAREKYSLTGSRLAAAI-----GIDPYTSQHDLKLILAKKKTPFFSDYCKKAM 1674
            Q T++W  AR    +T SR+A  +     G       +  +LI  +        +   AM
Sbjct: 3    QRTEEWFAARLG-KVTASRVADVMTKTKSGYAASRQNYMAELICQRLTGTQEIRFSNAAM 61

Query: 1675 EHGKHQEPIAREFYFNELETSIIEKGIFPLPGDKRIGCSPDGVIYTTVPGKDGVLQREGV 1854
            + G   EP AR  Y  E    + E G+   P     G SPDG++  T           G+
Sbjct: 62   QRGTELEPHARARYIIETGEIVTEVGLIDHPTIAGFGASPDGLVGDT-----------GL 110

Query: 1855 IEIKCPLSTTNFSGLKNGR-KPDALANAQKIPLDYIPQIFANMACTGAQWCDYICW---V 2022
            IEIKCP + T+   +K G+ KP+           YI Q+   MACTG QWCD++ +   +
Sbjct: 111  IEIKCPNTWTHIETIKTGKPKPE-----------YIKQMQTQMACTGRQWCDFVSYDDRL 159

Query: 2023 PGEV-YFCRRV 2052
            P ++ YFC R+
Sbjct: 160  PDDMQYFCTRI 170

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,880,819,510
Number of extensions: 85940844
Number of successful extensions: 174830
Number of sequences better than 10.0: 55
Number of HSP's gapped: 174721
Number of HSP's successfully gapped: 56
Length of query: 755
Length of database: 1,040,966,779
Length adjustment: 136
Effective length of query: 619
Effective length of database: 605,184,019
Effective search space: 374608907761
Effective search space used: 374608907761
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.65  gvh: 0.34  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.54  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U11056-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 4
CH (FL, L) 4
CF (FL, S) 3
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0