Contig-U11045-1 |
Contig ID |
Contig-U11045-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1898 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
3364214 |
End point |
3362305 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
25 |
Number of EST |
27 |
Link to clone list |
U11045 |
List of clone(s) |
est1=VFD209F,1,644 est2=AFL368F,68,649 est3=VFD209Z,650,1406 est4=AFO383Z,688,1374 est5=CFJ196Z,689,1400 est6=AFI670Z,848,1445 est7=AFL368Z,879,1556 est8=AHL419Z,1173,1864 est9=VHI443Z,1187,1900 est10=CHF893Z,1189,1815 est11=CHS353Z,1199,1830 est12=AHQ619Z,1219,1923 est13=CHP634Z,1219,1905 est14=CHH123Z,1220,1878 est15=CHG403Z,1221,1811 est16=CHF184Z,1222,1865 est17=AHH552Z,1223,1923 est18=CHD808Z,1226,1797 est19=AHL431Z,1237,1858 est20=CFF560Z,1239,1867 est21=CFJ750Z,1239,1800 est22=CHI525Z,1271,1799 est23=CHP174Z,1278,1871 est24=VFB111Z,1283,1800 est25=CHR886Z,1360,1759 est26=CHK215Z,1454,1896 est27=CFJ850Z,1582,1760
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Translated Amino Acid sequence |
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Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.22 |
Homology vs DNA |
Query= Contig-U11045-1 (Contig-U11045-1Q) /CSM_Contig/Contig-U11045-1Q.Seq.d (1908 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ430358) Dictyostelium discoideum cDNA clone:ddv7a04, 3' e... 1403 0.0 3 (BJ375783) Dictyostelium discoideum cDNA clone:ddc19o23, 3' ... 1346 0.0 1 (BJ346013) Dictyostelium discoideum cDNA clone:dda29f21, 3' ... 1322 0.0 1 (BJ345406) Dictyostelium discoideum cDNA clone:dda23h17, 3' ... 1178 0.0 1 (BJ344170) Dictyostelium discoideum cDNA clone:dda18k18, 3' ... 1011 0.0 2 (BJ441628) Dictyostelium discoideum cDNA clone:ddv47f12, 3' ... 569 0.0 3 (BJ354263) Dictyostelium discoideum cDNA clone:dda53f06, 3' ... 603 0.0 2 (BJ412107) Dictyostelium discoideum cDNA clone:ddv7a04, 5' e... 749 0.0 3 (BJ383502) Dictyostelium discoideum cDNA clone:ddc53c10, 3' ... 504 0.0 3 (BJ357596) Dictyostelium discoideum cDNA clone:dda64e06, 3' ... 511 0.0 3 (BJ378783) Dictyostelium discoideum cDNA clone:ddc32g21, 3' ... 505 0.0 2 (BJ352384) Dictyostelium discoideum cDNA clone:dda46g13, 3' ... 504 0.0 4 (BJ372427) Dictyostelium discoideum cDNA clone:ddc12g15, 3' ... 464 0.0 2 (BJ354379) Dictyostelium discoideum cDNA clone:dda53n08, 3' ... 476 0.0 2 (BJ346824) Dictyostelium discoideum cDNA clone:dda25n02, 3' ... 430 0.0 3 (BJ379132) Dictyostelium discoideum cDNA clone:ddc33j24, 3' ... 571 0.0 3 (BJ328276) Dictyostelium discoideum cDNA clone:dda23h17, 5' ... 747 0.0 3 (BJ379844) Dictyostelium discoideum cDNA clone:ddc36m05, 3' ... 396 0.0 4 (BJ386551) Dictyostelium discoideum cDNA clone:ddc58j13, 3' ... 551 0.0 3 (BJ383359) Dictyostelium discoideum cDNA clone:ddc52c19, 3' ... 426 0.0 2 (BJ379189) Dictyostelium discoideum cDNA clone:ddc34f02, 3' ... 507 0.0 2 (BJ376601) Dictyostelium discoideum cDNA clone:ddc29p02, 3' ... 498 0.0 3 (BJ375915) Dictyostelium discoideum cDNA clone:ddc20d13, 3' ... 472 0.0 3 (BJ380759) Dictyostelium discoideum cDNA clone:ddc39a07, 3' ... 408 e-171 4 (BJ429312) Dictyostelium discoideum cDNA clone:ddv3e03, 3' e... 305 e-168 4 (BJ381635) Dictyostelium discoideum cDNA clone:ddc42m04, 3' ... 283 e-124 3 (BJ386341) Dictyostelium discoideum cDNA clone:ddc57l22, 3' ... 206 1e-81 3 (BJ375916) Dictyostelium discoideum cDNA clone:ddc20d14, 3' ... 196 2e-45 1 (DB587608) Halocynthia roretzi cDNA clone:ma329j24, 5' end. 54 7e-08 3 (BC063910) Xenopus tropicalis protein phosphatase 2, regulat... 50 4e-07 2 (CR848574) Xenopus tropicalis finished cDNA, clone TEgg007l21. 50 4e-07 2 (BX717069) Xenopus tropicalis EST, clone TTpA026e19 3'. 50 4e-07 2 (CX328653) JGI_XZT67714.fwd NIH_XGC_tropTad5 Xenopus (Silura... 50 4e-07 2 (DT429512) JGI_CABJ8039.fwd NIH_XGC_tropSki1 Xenopus (Silura... 50 4e-07 2 (CR409600) Xenopus tropicalis EST, clone TTbA004j13 5'. 50 4e-07 2 (CX974588) JGI_CAAP8649.fwd NIH_XGC_tropInt1 Xenopus (Silura... 50 4e-07 2 (DN062330) JGI_CABD662.fwd NIH_XGC_tropLun1 Xenopus (Siluran... 50 4e-07 2 (DN098411) JGI_CABE7922.fwd NIH_XGC_tropOva1 Xenopus (Silura... 50 4e-07 2 (CX903558) JGI_CAAM14347.fwd NIH_XGC_tropTe3 Xenopus (Silura... 50 4e-07 2 (BX737829) Xenopus tropicalis EST, clone TTpA060a17 5'. 50 4e-07 2 (BX733413) Xenopus tropicalis EST, clone TTpA052i12 5'. 50 4e-07 2 (AL848473) Xenopus tropicalis EST, clone TEgg004k06 5'. 50 4e-07 2 (AL679728) Xenopus tropicalis EST, clone TNeu051k23 5'. 50 4e-07 2 (CT673126) Danio rerio EST, clone ZF_mu_148e16 5'. 40 7e-07 4 (FE048651) LV_ES_RA10M10f Litopenaeus vannamei eyestalk cDNA... 52 3e-06 2 (BC165741) Danio rerio protein phosphatase 2, regulatory sub... 40 4e-06 4 (BC048034) Danio rerio protein phosphatase 2, regulatory sub... 40 7e-06 4 (AY150215) Danio rerio protein phosphatase 2A B' regulatory ... 40 1e-05 4 (BC081028) Xenopus laevis MGC81679 protein, mRNA (cDNA clone... 64 2e-05 1 (BC045057) Xenopus laevis MGC81679 protein, mRNA (cDNA clone... 64 2e-05 1 (CF286662) AGENCOURT_15188758 NICHD_XGC_Emb4 Xenopus laevis ... 64 2e-05 1 (CD254489) AGENCOURT_14214995 NICHD_XGC_Eye1 Xenopus laevis ... 64 2e-05 1 (BJ064623) Xenopus laevis cDNA clone:XL080d12, 5' end, singl... 64 2e-05 1 (BJ036922) Xenopus laevis cDNA clone:XL037n24, 5' end, singl... 64 2e-05 1 (BG944163) ax47c04.x1 Hembase; Erythroid Progenitor Cells (L... 38 2e-05 3 (DB002168) Homo sapiens cDNA clone TBAES2004274, 5' end, mRN... 38 3e-05 3 (BP239423) Homo sapiens cDNA clone: HEP06930, Sugano cDNA li... 38 3e-05 3 (DN401405) LIB4004-011-Q1-K1-G8 LIB4004 Canis lupus familiar... 38 3e-05 3 (BV179199) sqnm104280 Human DNA (Sequenom) Homo sapiens STS ... 38 4e-05 3 (CN786476) 4120474 BARC 8BOV Bos taurus cDNA clone 8BOV_29B1... 38 4e-05 3 (CD640732) AGENCOURT_14542108 NIH_MGC_191 Homo sapiens cDNA ... 38 5e-05 3 (EE813334) 010914ONDC153012HT ONDC Ovis aries cDNA, mRNA seq... 38 5e-05 3 (DN425557) LIB4216-050-R1-K1-E4 LIB4216 Canis lupus familiar... 38 6e-05 3 (CX625532) H17_B7 Spermophilus tridecemlineatus hibernating ... 38 6e-05 3 (EE357783) LB02960.CR_C15 GC_BGC-29 Bos taurus cDNA clone IM... 38 6e-05 3 (EH126421) LB01131.CR_E03 GC_BGC-11 Bos taurus cDNA clone IM... 38 7e-05 3 (AU141220) Homo sapiens cDNA clone:THYRO1000222, 5' end, exp... 38 7e-05 3 (BQ722117) AGENCOURT_8232544 Lupski_sympathetic_trunk Homo s... 38 7e-05 3 (CR537764) Pongo abelii mRNA; EST DKFZp459D1011_r1 (from clo... 38 7e-05 3 (BI254213) 602974870F1 NIH_MGC_12 Homo sapiens cDNA clone IM... 38 8e-05 3 (BQ945738) AGENCOURT_8949008 NIH_MGC_71 Homo sapiens cDNA cl... 38 8e-05 3 (CF219748) AGENCOURT_15040442 NICHD_XGC_Emb5 Xenopus (Silura... 42 8e-05 2 (DQ895568) Synthetic construct Homo sapiens clone IMAGE:1000... 38 2e-04 3 (DQ892361) Synthetic construct clone IMAGE:100004991; FLH185... 38 2e-04 3 (AM904037) Carica papaya EST, clone Cpap_007B04.g_030.ab1. 42 2e-04 3 (FC817353) Sr_pAMT7_08k16_T7 S. ratti mixed stage pAMP Stron... 46 2e-04 3 (AK312530) Homo sapiens cDNA, FLJ92899, Homo sapiens protein... 38 3e-04 3 (AM559016) Paracentrotus lividus EST, clone MPMGp1172I1567Q,... 60 3e-04 1 (EX271903) 1452226_5_A16_064 PY06 Carica papaya cDNA, mRNA s... 42 4e-04 3 (BC022474) Homo sapiens protein phosphatase 2, regulatory su... 38 6e-04 3 (BC110883) Homo sapiens protein phosphatase 2, regulatory su... 38 6e-04 3 (EA063433) Sequence 1258 from patent US 7171311. 38 8e-04 3 (DD415923) Diagnosis and Prognosis of Breast Cancer Patients. 38 8e-04 3 (DD130672) Diagnosis and Prognosis of Breast Cancer Patients. 38 8e-04 3 (CQ871626) Sequence 117 from Patent WO2004078783. 38 8e-04 3 (AX210654) Sequence 296 from Patent WO0157058. 38 8e-04 3 (AR270487) Sequence 1050 from patent US 6500938. 38 8e-04 3 (L42373) Homo sapiens phosphatase 2A B56-alpha (PP2A) mRNA, ... 38 8e-04 3 (CQ726792) Sequence 12726 from Patent WO02068579. 38 8e-04 3 (DJ033363) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION. 38 8e-04 3 (BC133482) Bos taurus protein phosphatase 2, regulatory subu... 38 8e-04 3 (BD134488) Human nucleic acid sequence originating in mammar... 38 8e-04 3 (AX525092) Sequence 154 from Patent EP1236799. 38 8e-04 3 (AX017388) Sequence 154 from Patent WO9947669. 38 8e-04 3 (EE830781) 020605ONLN103037HT ONLN Ovis aries cDNA, mRNA seq... 38 8e-04 3 (BM551386) AGENCOURT_6544845 NIH_MGC_72 Homo sapiens cDNA cl... 38 0.002 3 (BE541192) 601064053F1 NIH_MGC_10 Homo sapiens cDNA clone IM... 38 0.002 3 (CF661324) CcLM09a34l10f1 Carp muscle library 1 Cyprinus car... 40 0.003 3 (FC469035) CAXH4761.fwd CAXH Mnemiopsis leidyi whole animal ... 52 0.003 3 (DC033181) Xenopus laevis NBRP cDNA clone:xlk52e05ex, 5' end. 46 0.004 2
>(BJ430358) Dictyostelium discoideum cDNA clone:ddv7a04, 3' end, single read. Length = 754
Score = 1404 bits (708), Expect(3) = 0.0 Identities = 711/712 (99%) Strand = Plus / Minus
Query: 659 ccacacattcaagttgtctacgaagtattattaagatttatagattcacccactttcaat 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 ccacacattcaagttgtctacgaagtattattaagatttatagattcacccactttcaat 695
Query: 719 acacacattgcaaaaaactatgtcgacgatcgatttgtattacaaatgttggatcttttc 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acacacattgcaaaaaactatgtcgacgatcgatttgtattacaaatgttggatcttttc 635
Query: 779 gatagtgaagatccaagagagagagattacctcaagaccacattacacagaatctatgga 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gatagtgaagatccaagagagagagattacctcaagaccacattacacagaatctatgga 575
Query: 839 aagtttttaggactcagaggtttcattagaaccgcaattagaaatttgttttgtaccttt 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 aagtttttaggactcagaggtttcattagaaccgcaattagaaatttgttttgtaccttt 515
Query: 899 gtctatgaatcccatcagcataatggcatttcagagattttagaggtgttgggaagtatc 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 514 gtctatgaatcccatcagcataatggcatttcagagattttagaggtgttgggaagtatc 455
Query: 959 atcaatgggttcctcgttccattgaaagatgaacataaacaatttctcatcaaagtttta 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 atcaatgggttcctcgttccattgaaagatgaacataaacaatttctcatcaaagtttta 395
Query: 1019 ataccattacataaaccaaaatcatattcagtctattgttcccatttgggttattgtatg 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 ataccattacataaaccaaaatcatattcagtctattgttcccatttgggttattgtatg 335
Query: 1079 tcacaattcatcgagaaggaaccatcattggctgaaccaatctttaaatcaattcttaga 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 tcacaattcatcgagaaggaaccatcattggctgaaccaatctttaaatcaattcttaga 275
Query: 1139 ctttggccatgtggtaatagtcaaaaggaggttttattcctctctgagatggaggatcta 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 ctttggccatgtggtaatagtcaaaaggaggttttattcctctctgagatggaggatcta 215
Query: 1199 ttgggattggtaagtgatgaacaatttgctaaatttagaaatcaattcttccgtcaaatg 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 ttgggattggtaagtgatgaacaatttgctaaatttagaaatcaattcttccgtcaaatg 155
Query: 1259 acaaaatgtttccaaagtgaacactttcaagttgctgaaagagctctctatctctttagt 1318 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 154 acaaaatgtttccaaagtgaacactttcaaattgctgaaagagctctctatctctttagt 95
Query: 1319 aatgaaaatatagttttattaatagcttcaaaaaataatttcactttagctt 1370 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94 aatgaaaatatagttttattaatagcttcaaaaaataatttcactttagctt 43
Score = 52.0 bits (26), Expect(3) = 0.0 Identities = 26/26 (100%) Strand = Plus / Minus
Query: 1370 ttggaaactttttataaaccattaca 1395 |||||||||||||||||||||||||| Sbjct: 44 ttggaaactttttataaaccattaca 19
Score = 34.2 bits (17), Expect(3) = 0.0 Identities = 17/17 (100%) Strand = Plus / Minus
Query: 1398 aaaattcaatttcgcat 1414 ||||||||||||||||| Sbjct: 17 aaaattcaatttcgcat 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,973,427,792 Number of extensions: 134181631 Number of successful extensions: 9508985 Number of sequences better than 10.0: 328 Length of query: 1908 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1884 Effective length of database: 97,308,875,965 Effective search space: 183329922318060 Effective search space used: 183329922318060 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.29 |
Homology vs Protein |
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PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
2 |
AH (FL, L) |
4 |
AF (FL, S) |
3 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
11 |
CF (FL, S) |
4 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |