Contig-U11045-1
Contig ID Contig-U11045-1
Contig update 2002.12.18
Contig sequence
>Contig-U11045-1 (Contig-U11045-1Q) /CSM_Contig/Contig-U11045-1Q.Seq.d
AATATTCATTCGAAACCTCAATTTTATAGGATCATATAAATTATCAACAA
AACTTATCACAGTCACCAATTTTAAATTCTAATAAAAATCAAACCCAACA
AAACCAACAACAACAACAACAACAACAACAACAAAACCCACAACAACAAC
AACAATTTCAACATCAACAAGTACCACAATTATCACCACAACAAATACCA
TTTAGTGAACCATTAAAAAATAATTTAACATTACAACATCAACAACAACA
ACAACAACATCAACAATTAGCAGGTGGACAACATGGTAGTTTATTAAGAA
AGAGTTATTCTAGTCGTTTTCATGAGAAACCACAAGGTGAACTTACTAAA
ATAGCCAACTTTCAAGATGTTTCACCAGAGGAAAGACCATCATTATTTCT
TCTCAAGTTGAAACAATGTTGTTATGTGTATGATTTCTCGGACAATACGT
ATATGGTATCAAAAGGTGTTAAACAAGAGGCACTTTTACAATGTGTTAAT
TTTTTATCAACAAATGATCAACCTCTCCATGAGAGTATTTACAAGATGGT
ATTTGAAATGGTGGCAGTCAATCTTTTTAGACCACTTCCACCAAGAATCA
ATCCCTATGGTGTAATGTATGATCCAGAGGAGGATGAACCCATTTTAG--
--------CCACACATTCAAGTTGTCTACGAAGTATTATTAAGATTTATA
GATTCACCCACTTTCAATACACACATTGCAAAAAACTATGTCGACGATCG
ATTTGTATTACAAATGTTGGATCTTTTCGATAGTGAAGATCCAAGAGAGA
GAGATTACCTCAAGACCACATTACACAGAATCTATGGAAAGTTTTTAGGA
CTCAGAGGTTTCATTAGAACCGCAATTAGAAATTTGTTTTGTACCTTTGT
CTATGAATCCCATCAGCATAATGGCATTTCAGAGATTTTAGAGGTGTTGG
GAAGTATCATCAATGGGTTCCTCGTTCCATTGAAAGATGAACATAAACAA
TTTCTCATCAAAGTTTTAATACCATTACATAAACCAAAATCATATTCAGT
CTATTGTTCCCATTTGGGTTATTGTATGTCACAATTCATCGAGAAGGAAC
CATCATTGGCTGAACCAATCTTTAAATCAATTCTTAGACTTTGGCCATGT
GGTAATAGTCAAAAGGAGGTTTTATTCCTCTCTGAGATGGAGGATCTATT
GGGATTGGTAAGTGATGAACAATTTGCTAAATTTAGAAATCAATTCTTCC
GTCAAATGACAAAATGTTTCCAAAGTGAACACTTTCAAGTTGCTGAAAGA
GCTCTCTATCTCTTTAGTAATGAAAATATAGTTTTATTAATAGCTTCAAA
AAATAATTTCACTTTAGCTTTGGAAACTTTTTATAAACCATTACATGAAA
ATTCAATTTCGCATTGGAATAGATCAATTAGAAATTTATCAATTAGTTCA
TTAAAATTATTTATGGAAATTGATATGGATTTATTTAATAAAATTAGTGA
AAAATATAAAGAAAGTAAAAAGAAACAACAACAAATACAACAACGTGAAA
AATTCAAACAAAATGCGCCAGAAACTCAAAAATCTAAACAAATTAACCAA
AACAACAATAATAATAATAATAATATCAACAACAACAACAACAACAATAA
TAATAATAATGGTTCAACCGAAACTAAAGCTGATAAACCATCAATGATAA
GAAGAAAATCATTATTACCAGTTGATCCTTCAACGATCGCTGCTTTATCT
TCTCATCGTTCACTTGAAGATATTATGTCAACAAATAGTAATAGCGGTAA
TGATGACGATGATGAAAATAATCATACCAATCATGATTCTGAAATTGAAA
ATGAAGTTAAAGAAGATTTTAGGGTACCTGTAAATAATCGTTACACCTTA
CCTGAAAG

Gap gap included
Contig length 1898
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3364214
End point 3362305
Strand (PLUS/MINUS) MINUS
Number of clones 25
Number of EST 27
Link to clone list U11045
List of clone(s)

est1=VFD209F,1,644
est2=AFL368F,68,649
est3=VFD209Z,650,1406
est4=AFO383Z,688,1374
est5=CFJ196Z,689,1400
est6=AFI670Z,848,1445
est7=AFL368Z,879,1556
est8=AHL419Z,1173,1864
est9=VHI443Z,1187,1900
est10=CHF893Z,1189,1815
est11=CHS353Z,1199,1830
est12=AHQ619Z,1219,1923
est13=CHP634Z,1219,1905
est14=CHH123Z,1220,1878
est15=CHG403Z,1221,1811
est16=CHF184Z,1222,1865
est17=AHH552Z,1223,1923
est18=CHD808Z,1226,1797
est19=AHL431Z,1237,1858
est20=CFF560Z,1239,1867
est21=CFJ750Z,1239,1800
est22=CHI525Z,1271,1799
est23=CHP174Z,1278,1871
est24=VFB111Z,1283,1800
est25=CHR886Z,1360,1759
est26=CHK215Z,1454,1896
est27=CFJ850Z,1582,1760
Translated Amino Acid sequence
ysfetsil*DHINYQQNLSQSPILNSNKNQTQQNQQQQQQQQQQNPQQQQQFQHQQVPQL
SPQQIPFSEPLKNNLTLQHQQQQQQHQQLAGGQHGSLLRKSYSSRFHEKPQGELTKIANF
QDVSPEERPSLFLLKLKQCCYVYDFSDNTYMVSKGVKQEALLQCVNFLSTNDQPLHESIY
KMVFEMVAVNLFRPLPPRINPYGVMYDPEEDEPIL---

---PHIQVVYEVLLRFIDSPTFNTHIAKNYVDDRFVLQMLDLFDSEDPRERDYLKTTLHR
IYGKFLGLRGFIRTAIRNLFCTFVYESHQHNGISEILEVLGSIINGFLVPLKDEHKQFLI
KVLIPLHKPKSYSVYCSHLGYCMSQFIEKEPSLAEPIFKSILRLWPCGNSQKEVLFLSEM
EDLLGLVSDEQFAKFRNQFFRQMTKCFQSEHFQVAERALYLFSNENIVLLIASKNNFTLA
LETFYKPLHENSISHWNRSIRNLSISSLKLFMEIDMDLFNKISEKYKESKKKQQQIQQRE
KFKQNAPETQKSKQINQNNNNNNNNINNNNNNNNNNNGSTETKADKPSMIRRKSLLPVDP
STIAALSSHRSLEDIMSTNSNSGNDDDDENNHTNHDSEIENEVKEDFRVPVNNRYTLPE


Translated Amino Acid sequence (All Frames)
Frame A:
nihskpqfyrii*iinktyhshqf*ilikikpnktnnnnnnnnnkthnnnnnfninkyhn
yhhnkyhlvnh*kii*hyninnnnnninn*qvdnmvvy*ervilvvfmrnhkvnllk*pt
fkmfhqrkdhhyffss*nnvvmcmisrtiriwyqkvlnkrhfynvlifyqqminlsmrvf
trwylkwwqsifldhfhqesipmv*cmiqrrmnpf*---

---PHIQVVYEVLLRFIDSPTFNTHIAKNYVDDRFVLQMLDLFDSEDPRERDYLKTTLHR
IYGKFLGLRGFIRTAIRNLFCTFVYESHQHNGISEILEVLGSIINGFLVPLKDEHKQFLI
KVLIPLHKPKSYSVYCSHLGYCMSQFIEKEPSLAEPIFKSILRLWPCGNSQKEVLFLSEM
EDLLGLVSDEQFAKFRNQFFRQMTKCFQSEHFQVAERALYLFSNENIVLLIASKNNFTLA
LETFYKPLHENSISHWNRSIRNLSISSLKLFMEIDMDLFNKISEKYKESKKKQQQIQQRE
KFKQNAPETQKSKQINQNNNNNNNNINNNNNNNNNNNGSTETKADKPSMIRRKSLLPVDP
STIAALSSHRSLEDIMSTNSNSGNDDDDENNHTNHDSEIENEVKEDFRVPVNNRYTLPE

Frame B:
ifirnlnfigsyklstklitvtnfkf**ksnptkptttttttttkptttttistststti
itttnti**tikk*fnittsttttttstisrwttw*fikkelf*sfs*ettr*ty*nsql
srcftrgktiiissqvetmllcv*flgqyvygikrc*trgtftmc*ffink*stsp*eyl
qdgi*nggsqsf*ttstknqslwcnv*srgg*thf---

---htfklstkyy*dl*ihplsihtlqktmstidlyykcwifsivkiqereitsrphyte
smesf*dsevslepqleicfvplsmnpisimafqrf*rcwevssmgssfh*kmninnfss
kf*yhyinqnhiqsivpiwvivchnssrrnhhwlnqslnqfldfghvvivkrrfysslrw
riywdw*vmnnllnleinssvk*qnvskvntfkllkelsislvmki*fy**lqkiisl*l
wklfinhymkiqfrigidqleiyqlvh*nylwkliwiyliklvknikkvkrnnnkynnvk
nsnkmrqklknlnkltkttiiiiiisttttttiiiimvqpklklinhq**eenhyyqlil
qrsllyllivhlkilcqqiviavmmtmmkiiipimilklkmklkkilgyl*iivtpylk

Frame C:
ysfetsil*DHINYQQNLSQSPILNSNKNQTQQNQQQQQQQQQQNPQQQQQFQHQQVPQL
SPQQIPFSEPLKNNLTLQHQQQQQQHQQLAGGQHGSLLRKSYSSRFHEKPQGELTKIANF
QDVSPEERPSLFLLKLKQCCYVYDFSDNTYMVSKGVKQEALLQCVNFLSTNDQPLHESIY
KMVFEMVAVNLFRPLPPRINPYGVMYDPEEDEPIL---

---thssclrsiikiyrfthfqythckklcrrsicitnvgsfr**rskrerlpqdhitqn
lwkvfrtqrfh*nrn*kfvlylcl*ipsa*whfrdfrgvgkyhqwvprsier*t*tishq
sfntit*tkiifsllfpfgllyvtihregtiig*tnl*ins*tlamw**skggfipl*dg
gsigigk**tic*i*ksilpsndkmfpk*tlssc*ksslsl***kysfinsfkk*fhfsf
gnfl*tit*kfnfale*in*kfin*fikiiygn*ygfi**n**ki*rk*ketttnttt*k
iqtkcarnski*tn*pkqq*****yqqqqqqq****wfnrn*s**tindkkkiiits*sf
ndrcfifssft*ryyvnk***r***r**k*syqs*f*n*k*s*rrf*gtck*slhlt*k

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11045-1 (Contig-U11045-1Q)
/CSM_Contig/Contig-U11045-1Q.Seq.d
(1908 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11045-1 (Contig-U11045-1Q) /CSM_Contig/Conti... 2397 0.0
Contig-U11939-1 (Contig-U11939-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U05579-1 (Contig-U05579-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U10770-1 (Contig-U10770-1Q) /CSM_Contig/Conti... 38 0.034
Contig-U09520-1 (Contig-U09520-1Q) /CSM_Contig/Conti... 38 0.034
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U12851-1 (Contig-U12851-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U12085-1 (Contig-U12085-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U11718-1 (Contig-U11718-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U11392-1 (Contig-U11392-1Q) /CSM_Contig/Conti... 36 0.14

>Contig-U11045-1 (Contig-U11045-1Q) /CSM_Contig/Contig-U11045-1Q.Seq.d
Length = 1908

Score = 2397 bits (1209), Expect = 0.0
Identities = 1239/1239 (100%)
Strand = Plus / Plus


Query: 267 ttagcaggtggacaacatggtagtttattaagaaagagttattctagtcgttttcatgag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttagcaggtggacaacatggtagtttattaagaaagagttattctagtcgttttcatgag 326


Query: 327 aaaccacaaggtgaacttactaaaatagccaactttcaagatgtttcaccagaggaaaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaccacaaggtgaacttactaaaatagccaactttcaagatgtttcaccagaggaaaga 386


Query: 387 ccatcattatttcttctcaagttgaaacaatgttgttatgtgtatgatttctcggacaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccatcattatttcttctcaagttgaaacaatgttgttatgtgtatgatttctcggacaat 446


Query: 447 acgtatatggtatcaaaaggtgttaaacaagaggcacttttacaatgtgttaatttttta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acgtatatggtatcaaaaggtgttaaacaagaggcacttttacaatgtgttaatttttta 506


Query: 507 tcaacaaatgatcaacctctccatgagagtatttacaagatggtatttgaaatggtggca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcaacaaatgatcaacctctccatgagagtatttacaagatggtatttgaaatggtggca 566


Query: 567 gtcaatctttttagaccacttccaccaagaatcaatccctatggtgtaatgtatgatcca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtcaatctttttagaccacttccaccaagaatcaatccctatggtgtaatgtatgatcca 626


Query: 627 gaggaggatgaacccattttagnnnnnnnnnnccacacattcaagttgtctacgaagtat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaggaggatgaacccattttagnnnnnnnnnnccacacattcaagttgtctacgaagtat 686


Query: 687 tattaagatttatagattcacccactttcaatacacacattgcaaaaaactatgtcgacg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tattaagatttatagattcacccactttcaatacacacattgcaaaaaactatgtcgacg 746


Query: 747 atcgatttgtattacaaatgttggatcttttcgatagtgaagatccaagagagagagatt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atcgatttgtattacaaatgttggatcttttcgatagtgaagatccaagagagagagatt 806


Query: 807 acctcaagaccacattacacagaatctatggaaagtttttaggactcagaggtttcatta 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 acctcaagaccacattacacagaatctatggaaagtttttaggactcagaggtttcatta 866


Query: 867 gaaccgcaattagaaatttgttttgtacctttgtctatgaatcccatcagcataatggca 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaaccgcaattagaaatttgttttgtacctttgtctatgaatcccatcagcataatggca 926


Query: 927 tttcagagattttagaggtgttgggaagtatcatcaatgggttcctcgttccattgaaag 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tttcagagattttagaggtgttgggaagtatcatcaatgggttcctcgttccattgaaag 986


Query: 987 atgaacataaacaatttctcatcaaagttttaataccattacataaaccaaaatcatatt 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 atgaacataaacaatttctcatcaaagttttaataccattacataaaccaaaatcatatt 1046


Query: 1047 cagtctattgttcccatttgggttattgtatgtcacaattcatcgagaaggaaccatcat 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cagtctattgttcccatttgggttattgtatgtcacaattcatcgagaaggaaccatcat 1106


Query: 1107 tggctgaaccaatctttaaatcaattcttagactttggccatgtggtaatagtcaaaagg 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 tggctgaaccaatctttaaatcaattcttagactttggccatgtggtaatagtcaaaagg 1166


Query: 1167 aggttttattcctctctgagatggaggatctattgggattggtaagtgatgaacaatttg 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 aggttttattcctctctgagatggaggatctattgggattggtaagtgatgaacaatttg 1226


Query: 1227 ctaaatttagaaatcaattcttccgtcaaatgacaaaatgtttccaaagtgaacactttc 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 ctaaatttagaaatcaattcttccgtcaaatgacaaaatgtttccaaagtgaacactttc 1286


Query: 1287 aagttgctgaaagagctctctatctctttagtaatgaaaatatagttttattaatagctt 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 aagttgctgaaagagctctctatctctttagtaatgaaaatatagttttattaatagctt 1346


Query: 1347 caaaaaataatttcactttagctttggaaactttttataaaccattacatgaaaattcaa 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 caaaaaataatttcactttagctttggaaactttttataaaccattacatgaaaattcaa 1406


Query: 1407 tttcgcattggaatagatcaattagaaatttatcaattagttcattaaaattatttatgg 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 tttcgcattggaatagatcaattagaaatttatcaattagttcattaaaattatttatgg 1466


Query: 1467 aaattgatatggatttatttaataaaattagtgaaaaat 1505
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 aaattgatatggatttatttaataaaattagtgaaaaat 1505


Score = 492 bits (248), Expect = e-139
Identities = 248/248 (100%)
Strand = Plus / Plus


Query: 1661 ggttcaaccgaaactaaagctgataaaccatcaatgataagaagaaaatcattattacca 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 ggttcaaccgaaactaaagctgataaaccatcaatgataagaagaaaatcattattacca 1720


Query: 1721 gttgatccttcaacgatcgctgctttatcttctcatcgttcacttgaagatattatgtca 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 gttgatccttcaacgatcgctgctttatcttctcatcgttcacttgaagatattatgtca 1780


Query: 1781 acaaatagtaatagcggtaatgatgacgatgatgaaaataatcataccaatcatgattct 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 acaaatagtaatagcggtaatgatgacgatgatgaaaataatcataccaatcatgattct 1840


Query: 1841 gaaattgaaaatgaagttaaagaagattttagggtacctgtaaataatcgttacacctta 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 gaaattgaaaatgaagttaaagaagattttagggtacctgtaaataatcgttacacctta 1900


Query: 1901 cctgaaag 1908
||||||||
Sbjct: 1901 cctgaaag 1908


Score = 176 bits (89), Expect = 6e-44
Identities = 89/89 (100%)
Strand = Plus / Plus


Query: 1 aatattcattcgaaacctcaattttataggatcatataaattatcaacaaaacttatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatattcattcgaaacctcaattttataggatcatataaattatcaacaaaacttatcac 60


Query: 61 agtcaccaattttaaattctaataaaaat 89
|||||||||||||||||||||||||||||
Sbjct: 61 agtcaccaattttaaattctaataaaaat 89


Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Plus


Query: 1564 tgcgccagaaactcaaaaatctaaacaaattaaccaa 1600
|||||||||||||||||||||||||||||||||||||
Sbjct: 1564 tgcgccagaaactcaaaaatctaaacaaattaaccaa 1600


Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 193 aaataccatttagtgaaccattaaaaaataattt 226
||||||||||||||||||||||||||||||||||
Sbjct: 193 aaataccatttagtgaaccattaaaaaataattt 226


>Contig-U11939-1 (Contig-U11939-1Q) /CSM_Contig/Contig-U11939-1Q.Seq.d
Length = 1969

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1104 cattggctgaaccaatctttaaa 1126
|||||||||||||||||||||||
Sbjct: 1175 cattggctgaaccaatctttaaa 1197


>Contig-U05579-1 (Contig-U05579-1Q) /CSM_Contig/Contig-U05579-1Q.Seq.d
Length = 704

Score = 40.1 bits (20), Expect = 0.009
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 1422 gatcaattagaaatttatcaatta 1445
||||||||||||| ||||||||||
Sbjct: 45 gatcaattagaaaattatcaatta 68


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,429
Number of Sequences: 6905
Number of extensions: 23429
Number of successful extensions: 2561
Number of sequences better than 10.0: 341
length of query: 1908
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1892
effective length of database: 5,564,391
effective search space: 10527827772
effective search space used: 10527827772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U11045-1 (Contig-U11045-1Q) /CSM_Contig/Contig-U11045-1Q.Seq.d
(1908 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ430358) Dictyostelium discoideum cDNA clone:ddv7a04, 3' e... 1403 0.0 3
(BJ375783) Dictyostelium discoideum cDNA clone:ddc19o23, 3' ... 1346 0.0 1
(BJ346013) Dictyostelium discoideum cDNA clone:dda29f21, 3' ... 1322 0.0 1
(BJ345406) Dictyostelium discoideum cDNA clone:dda23h17, 3' ... 1178 0.0 1
(BJ344170) Dictyostelium discoideum cDNA clone:dda18k18, 3' ... 1011 0.0 2
(BJ441628) Dictyostelium discoideum cDNA clone:ddv47f12, 3' ... 569 0.0 3
(BJ354263) Dictyostelium discoideum cDNA clone:dda53f06, 3' ... 603 0.0 2
(BJ412107) Dictyostelium discoideum cDNA clone:ddv7a04, 5' e... 749 0.0 3
(BJ383502) Dictyostelium discoideum cDNA clone:ddc53c10, 3' ... 504 0.0 3
(BJ357596) Dictyostelium discoideum cDNA clone:dda64e06, 3' ... 511 0.0 3
(BJ378783) Dictyostelium discoideum cDNA clone:ddc32g21, 3' ... 505 0.0 2
(BJ352384) Dictyostelium discoideum cDNA clone:dda46g13, 3' ... 504 0.0 4
(BJ372427) Dictyostelium discoideum cDNA clone:ddc12g15, 3' ... 464 0.0 2
(BJ354379) Dictyostelium discoideum cDNA clone:dda53n08, 3' ... 476 0.0 2
(BJ346824) Dictyostelium discoideum cDNA clone:dda25n02, 3' ... 430 0.0 3
(BJ379132) Dictyostelium discoideum cDNA clone:ddc33j24, 3' ... 571 0.0 3
(BJ328276) Dictyostelium discoideum cDNA clone:dda23h17, 5' ... 747 0.0 3
(BJ379844) Dictyostelium discoideum cDNA clone:ddc36m05, 3' ... 396 0.0 4
(BJ386551) Dictyostelium discoideum cDNA clone:ddc58j13, 3' ... 551 0.0 3
(BJ383359) Dictyostelium discoideum cDNA clone:ddc52c19, 3' ... 426 0.0 2
(BJ379189) Dictyostelium discoideum cDNA clone:ddc34f02, 3' ... 507 0.0 2
(BJ376601) Dictyostelium discoideum cDNA clone:ddc29p02, 3' ... 498 0.0 3
(BJ375915) Dictyostelium discoideum cDNA clone:ddc20d13, 3' ... 472 0.0 3
(BJ380759) Dictyostelium discoideum cDNA clone:ddc39a07, 3' ... 408 e-171 4
(BJ429312) Dictyostelium discoideum cDNA clone:ddv3e03, 3' e... 305 e-168 4
(BJ381635) Dictyostelium discoideum cDNA clone:ddc42m04, 3' ... 283 e-124 3
(BJ386341) Dictyostelium discoideum cDNA clone:ddc57l22, 3' ... 206 1e-81 3
(BJ375916) Dictyostelium discoideum cDNA clone:ddc20d14, 3' ... 196 2e-45 1
(DB587608) Halocynthia roretzi cDNA clone:ma329j24, 5' end. 54 7e-08 3
(BC063910) Xenopus tropicalis protein phosphatase 2, regulat... 50 4e-07 2
(CR848574) Xenopus tropicalis finished cDNA, clone TEgg007l21. 50 4e-07 2
(BX717069) Xenopus tropicalis EST, clone TTpA026e19 3'. 50 4e-07 2
(CX328653) JGI_XZT67714.fwd NIH_XGC_tropTad5 Xenopus (Silura... 50 4e-07 2
(DT429512) JGI_CABJ8039.fwd NIH_XGC_tropSki1 Xenopus (Silura... 50 4e-07 2
(CR409600) Xenopus tropicalis EST, clone TTbA004j13 5'. 50 4e-07 2
(CX974588) JGI_CAAP8649.fwd NIH_XGC_tropInt1 Xenopus (Silura... 50 4e-07 2
(DN062330) JGI_CABD662.fwd NIH_XGC_tropLun1 Xenopus (Siluran... 50 4e-07 2
(DN098411) JGI_CABE7922.fwd NIH_XGC_tropOva1 Xenopus (Silura... 50 4e-07 2
(CX903558) JGI_CAAM14347.fwd NIH_XGC_tropTe3 Xenopus (Silura... 50 4e-07 2
(BX737829) Xenopus tropicalis EST, clone TTpA060a17 5'. 50 4e-07 2
(BX733413) Xenopus tropicalis EST, clone TTpA052i12 5'. 50 4e-07 2
(AL848473) Xenopus tropicalis EST, clone TEgg004k06 5'. 50 4e-07 2
(AL679728) Xenopus tropicalis EST, clone TNeu051k23 5'. 50 4e-07 2
(CT673126) Danio rerio EST, clone ZF_mu_148e16 5'. 40 7e-07 4
(FE048651) LV_ES_RA10M10f Litopenaeus vannamei eyestalk cDNA... 52 3e-06 2
(BC165741) Danio rerio protein phosphatase 2, regulatory sub... 40 4e-06 4
(BC048034) Danio rerio protein phosphatase 2, regulatory sub... 40 7e-06 4
(AY150215) Danio rerio protein phosphatase 2A B' regulatory ... 40 1e-05 4
(BC081028) Xenopus laevis MGC81679 protein, mRNA (cDNA clone... 64 2e-05 1
(BC045057) Xenopus laevis MGC81679 protein, mRNA (cDNA clone... 64 2e-05 1
(CF286662) AGENCOURT_15188758 NICHD_XGC_Emb4 Xenopus laevis ... 64 2e-05 1
(CD254489) AGENCOURT_14214995 NICHD_XGC_Eye1 Xenopus laevis ... 64 2e-05 1
(BJ064623) Xenopus laevis cDNA clone:XL080d12, 5' end, singl... 64 2e-05 1
(BJ036922) Xenopus laevis cDNA clone:XL037n24, 5' end, singl... 64 2e-05 1
(BG944163) ax47c04.x1 Hembase; Erythroid Progenitor Cells (L... 38 2e-05 3
(DB002168) Homo sapiens cDNA clone TBAES2004274, 5' end, mRN... 38 3e-05 3
(BP239423) Homo sapiens cDNA clone: HEP06930, Sugano cDNA li... 38 3e-05 3
(DN401405) LIB4004-011-Q1-K1-G8 LIB4004 Canis lupus familiar... 38 3e-05 3
(BV179199) sqnm104280 Human DNA (Sequenom) Homo sapiens STS ... 38 4e-05 3
(CN786476) 4120474 BARC 8BOV Bos taurus cDNA clone 8BOV_29B1... 38 4e-05 3
(CD640732) AGENCOURT_14542108 NIH_MGC_191 Homo sapiens cDNA ... 38 5e-05 3
(EE813334) 010914ONDC153012HT ONDC Ovis aries cDNA, mRNA seq... 38 5e-05 3
(DN425557) LIB4216-050-R1-K1-E4 LIB4216 Canis lupus familiar... 38 6e-05 3
(CX625532) H17_B7 Spermophilus tridecemlineatus hibernating ... 38 6e-05 3
(EE357783) LB02960.CR_C15 GC_BGC-29 Bos taurus cDNA clone IM... 38 6e-05 3
(EH126421) LB01131.CR_E03 GC_BGC-11 Bos taurus cDNA clone IM... 38 7e-05 3
(AU141220) Homo sapiens cDNA clone:THYRO1000222, 5' end, exp... 38 7e-05 3
(BQ722117) AGENCOURT_8232544 Lupski_sympathetic_trunk Homo s... 38 7e-05 3
(CR537764) Pongo abelii mRNA; EST DKFZp459D1011_r1 (from clo... 38 7e-05 3
(BI254213) 602974870F1 NIH_MGC_12 Homo sapiens cDNA clone IM... 38 8e-05 3
(BQ945738) AGENCOURT_8949008 NIH_MGC_71 Homo sapiens cDNA cl... 38 8e-05 3
(CF219748) AGENCOURT_15040442 NICHD_XGC_Emb5 Xenopus (Silura... 42 8e-05 2
(DQ895568) Synthetic construct Homo sapiens clone IMAGE:1000... 38 2e-04 3
(DQ892361) Synthetic construct clone IMAGE:100004991; FLH185... 38 2e-04 3
(AM904037) Carica papaya EST, clone Cpap_007B04.g_030.ab1. 42 2e-04 3
(FC817353) Sr_pAMT7_08k16_T7 S. ratti mixed stage pAMP Stron... 46 2e-04 3
(AK312530) Homo sapiens cDNA, FLJ92899, Homo sapiens protein... 38 3e-04 3
(AM559016) Paracentrotus lividus EST, clone MPMGp1172I1567Q,... 60 3e-04 1
(EX271903) 1452226_5_A16_064 PY06 Carica papaya cDNA, mRNA s... 42 4e-04 3
(BC022474) Homo sapiens protein phosphatase 2, regulatory su... 38 6e-04 3
(BC110883) Homo sapiens protein phosphatase 2, regulatory su... 38 6e-04 3
(EA063433) Sequence 1258 from patent US 7171311. 38 8e-04 3
(DD415923) Diagnosis and Prognosis of Breast Cancer Patients. 38 8e-04 3
(DD130672) Diagnosis and Prognosis of Breast Cancer Patients. 38 8e-04 3
(CQ871626) Sequence 117 from Patent WO2004078783. 38 8e-04 3
(AX210654) Sequence 296 from Patent WO0157058. 38 8e-04 3
(AR270487) Sequence 1050 from patent US 6500938. 38 8e-04 3
(L42373) Homo sapiens phosphatase 2A B56-alpha (PP2A) mRNA, ... 38 8e-04 3
(CQ726792) Sequence 12726 from Patent WO02068579. 38 8e-04 3
(DJ033363) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION. 38 8e-04 3
(BC133482) Bos taurus protein phosphatase 2, regulatory subu... 38 8e-04 3
(BD134488) Human nucleic acid sequence originating in mammar... 38 8e-04 3
(AX525092) Sequence 154 from Patent EP1236799. 38 8e-04 3
(AX017388) Sequence 154 from Patent WO9947669. 38 8e-04 3
(EE830781) 020605ONLN103037HT ONLN Ovis aries cDNA, mRNA seq... 38 8e-04 3
(BM551386) AGENCOURT_6544845 NIH_MGC_72 Homo sapiens cDNA cl... 38 0.002 3
(BE541192) 601064053F1 NIH_MGC_10 Homo sapiens cDNA clone IM... 38 0.002 3
(CF661324) CcLM09a34l10f1 Carp muscle library 1 Cyprinus car... 40 0.003 3
(FC469035) CAXH4761.fwd CAXH Mnemiopsis leidyi whole animal ... 52 0.003 3
(DC033181) Xenopus laevis NBRP cDNA clone:xlk52e05ex, 5' end. 46 0.004 2

>(BJ430358) Dictyostelium discoideum cDNA clone:ddv7a04, 3' end,
single read.
Length = 754

Score = 1404 bits (708), Expect(3) = 0.0
Identities = 711/712 (99%)
Strand = Plus / Minus


Query: 659 ccacacattcaagttgtctacgaagtattattaagatttatagattcacccactttcaat 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ccacacattcaagttgtctacgaagtattattaagatttatagattcacccactttcaat 695


Query: 719 acacacattgcaaaaaactatgtcgacgatcgatttgtattacaaatgttggatcttttc 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acacacattgcaaaaaactatgtcgacgatcgatttgtattacaaatgttggatcttttc 635


Query: 779 gatagtgaagatccaagagagagagattacctcaagaccacattacacagaatctatgga 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gatagtgaagatccaagagagagagattacctcaagaccacattacacagaatctatgga 575


Query: 839 aagtttttaggactcagaggtttcattagaaccgcaattagaaatttgttttgtaccttt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aagtttttaggactcagaggtttcattagaaccgcaattagaaatttgttttgtaccttt 515


Query: 899 gtctatgaatcccatcagcataatggcatttcagagattttagaggtgttgggaagtatc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtctatgaatcccatcagcataatggcatttcagagattttagaggtgttgggaagtatc 455


Query: 959 atcaatgggttcctcgttccattgaaagatgaacataaacaatttctcatcaaagtttta 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atcaatgggttcctcgttccattgaaagatgaacataaacaatttctcatcaaagtttta 395


Query: 1019 ataccattacataaaccaaaatcatattcagtctattgttcccatttgggttattgtatg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ataccattacataaaccaaaatcatattcagtctattgttcccatttgggttattgtatg 335


Query: 1079 tcacaattcatcgagaaggaaccatcattggctgaaccaatctttaaatcaattcttaga 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcacaattcatcgagaaggaaccatcattggctgaaccaatctttaaatcaattcttaga 275


Query: 1139 ctttggccatgtggtaatagtcaaaaggaggttttattcctctctgagatggaggatcta 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctttggccatgtggtaatagtcaaaaggaggttttattcctctctgagatggaggatcta 215


Query: 1199 ttgggattggtaagtgatgaacaatttgctaaatttagaaatcaattcttccgtcaaatg 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttgggattggtaagtgatgaacaatttgctaaatttagaaatcaattcttccgtcaaatg 155


Query: 1259 acaaaatgtttccaaagtgaacactttcaagttgctgaaagagctctctatctctttagt 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 154 acaaaatgtttccaaagtgaacactttcaaattgctgaaagagctctctatctctttagt 95


Query: 1319 aatgaaaatatagttttattaatagcttcaaaaaataatttcactttagctt 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aatgaaaatatagttttattaatagcttcaaaaaataatttcactttagctt 43

Score = 52.0 bits (26), Expect(3) = 0.0
Identities = 26/26 (100%)
Strand = Plus / Minus


Query: 1370 ttggaaactttttataaaccattaca 1395
||||||||||||||||||||||||||
Sbjct: 44 ttggaaactttttataaaccattaca 19

Score = 34.2 bits (17), Expect(3) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 1398 aaaattcaatttcgcat 1414
|||||||||||||||||
Sbjct: 17 aaaattcaatttcgcat 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,973,427,792
Number of extensions: 134181631
Number of successful extensions: 9508985
Number of sequences better than 10.0: 328
Length of query: 1908
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1884
Effective length of database: 97,308,875,965
Effective search space: 183329922318060
Effective search space used: 183329922318060
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11045-1 (Contig-U11045-1Q) /CSM_Contig/Contig-U11045-1Q.Seq.d
(1908 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE017348_115(AE017348|pid:none) Cryptococcus neoformans var. neo... 324 e-112
BC139635_1(BC139635|pid:none) Danio rerio protein phosphatase 2,... 329 e-110
CR381646_9(CR381646|pid:none) Zebrafish DNA sequence from clone ... 329 e-110
BC063910_1(BC063910|pid:none) Xenopus tropicalis protein phospha... 328 e-110
AE014297_2532(AE014297|pid:none) Drosophila melanogaster chromos... 336 e-110
AJ277140_1(AJ277140|pid:none) Drosophila melanogaster mRNA for r... 336 e-110
AE014297_2533(AE014297|pid:none) Drosophila melanogaster chromos... 336 e-110
AE014297_2531(AE014297|pid:none) Drosophila melanogaster chromos... 336 e-110
AE014297_2535(AE014297|pid:none) Drosophila melanogaster chromos... 336 e-110
AM920436_1549(AM920436|pid:none) Penicillium chrysogenum Wiscons... 322 e-109
AB055636_1(AB055636|pid:none) Mus musculus PP2A B56 gamma 2 mRNA... 337 e-109
AE014297_2537(AE014297|pid:none) Drosophila melanogaster chromos... 336 e-109
BC099800_1(BC099800|pid:none) Rattus norvegicus protein phosphat... 329 e-108
(Q14738) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 329 e-108
(Q28653) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 329 e-108
U38195_1(U38195|pid:none) Oryctolagus cuniculus protein phosphat... 329 e-108
AY052369_2(AY052369|pid:none) Homo sapiens PP2A B56 gamma gene, ... 332 e-108
BC093238_1(BC093238|pid:none) Danio rerio hypothetical protein L... 328 e-108
AP007162_313(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 315 e-108
(Q28651) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 329 e-107
U37770_1(U37770|pid:none) Oryctolagus cuniculus protein phosphat... 329 e-107
U38190_1(U38190|pid:none) Oryctolagus cuniculus protein phosphat... 329 e-107
U38192_1(U38192|pid:none) Oryctolagus cuniculus protein phosphat... 329 e-107
AY052369_3(AY052369|pid:none) Homo sapiens PP2A B56 gamma gene, ... 329 e-107
AJ851724_1(AJ851724|pid:none) Gallus gallus mRNA for hypothetica... 329 e-107
(Q60996) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 329 e-107
BC003979_1(BC003979|pid:none) Mus musculus protein phosphatase 2... 329 e-107
AB053464_1(AB053464|pid:none) Mus musculus mRNA for protein phos... 327 e-107
AB074009_1(AB074009|pid:none) Mus musculus ppp2r5d, mea1, peas g... 327 e-107
BC123756_1(BC123756|pid:none) Bos taurus protein phosphatase 2, ... 327 e-107
U37353_1(U37353|pid:none) Mus musculus protein phosphatase 2A B'... 329 e-106
U59418_1(U59418|pid:none) Mus musculus protein phosphatase 2A B'... 329 e-105
AK129042_1(AK129042|pid:none) Mus musculus mRNA for mKIAA0044 pr... 310 e-105
T19241(T19241) hypothetical protein C13G3.3a - Caenorhabditis el... 316 e-104
AK290604_1(AK290604|pid:none) Homo sapiens cDNA FLJ75651 complet... 329 e-103
AB000635_1(AB000635|pid:none) Homo sapiens mRNA for protein phos... 329 e-103
Z92817_4(Z92817|pid:none) Caenorhabditis elegans Cosmid W08G11, ... 317 e-101
BC048034_1(BC048034|pid:none) Danio rerio protein phosphatase 2,... 315 e-101
AB209811_1(AB209811|pid:none) Homo sapiens mRNA for epsilon isof... 316 e-100
BC092477_1(BC092477|pid:none) Homo sapiens protein phosphatase 2... 316 e-100
(Q61151) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 316 e-100
(Q16537) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 316 e-100
BC143234_1(BC143234|pid:none) Homo sapiens protein phosphatase 2... 316 e-100
BC048305_1(BC048305|pid:none) Homo sapiens protein phosphatase 2... 316 e-100
BC063927_1(BC063927|pid:none) Xenopus tropicalis protein phospha... 315 e-100
CU640366_1263(CU640366|pid:none) Podospora anserina genomic DNA ... 292 e-100
BC022474_1(BC022474|pid:none) Homo sapiens protein phosphatase 2... 306 e-100
CR382131_3(CR382131|pid:none) Yarrowia lipolytica strain CLIB122... 304 e-100
(Q15172) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 306 e-100
AB451233_1(AB451233|pid:none) Homo sapiens PPP2R5E mRNA for seri... 316 e-100
AF298157_1(AF298157|pid:none) Xenopus laevis protein phosphatase... 314 e-100
AK299520_1(AK299520|pid:none) Homo sapiens cDNA FLJ60843 complet... 313 e-100
T26292(T26292)hypothetical protein W08G11.4 - Caenorhabditis ele... 311 e-99
BC133482_1(BC133482|pid:none) Bos taurus protein phosphatase 2, ... 305 e-99
BT045739_1(BT045739|pid:none) Salmo salar clone ssal-rgf-530-049... 313 e-99
AK145397_1(AK145397|pid:none) Mus musculus cDNA, RIKEN full-leng... 304 1e-99
EU307104_1(EU307104|pid:none) Xenopus laevis phosphatase regulat... 308 1e-99
AY813849_1(AY813849|pid:none) Schistosoma japonicum SJCHGC06302 ... 283 2e-99
FN357369_70(FN357369|pid:none) Schistosoma mansoni genome sequen... 284 2e-99
CR861200_1(CR861200|pid:none) Pongo abelii mRNA; cDNA DKFZp459H0... 332 5e-99
AE014297_4308(AE014297|pid:none) Drosophila melanogaster chromos... 312 2e-98
CR860408_1(CR860408|pid:none) Pongo abelii mRNA; cDNA DKFZp459B2... 329 2e-98
BC084241_1(BC084241|pid:none) Xenopus laevis hypothetical LOC495... 315 3e-98
CR380952_49(CR380952|pid:none) Candida glabrata strain CBS138 ch... 277 4e-98
AL513466_12(AL513466|pid:none) Neurospora crassa DNA linkage gro... 279 4e-98
AY150214_1(AY150214|pid:none) Danio rerio protein phosphatase 2A... 307 5e-98
BC121566_1(BC121566|pid:none) Xenopus tropicalis PPP2R5E protein... 302 9e-98
BC075466_1(BC075466|pid:none) Xenopus tropicalis PPP2R5E protein... 302 9e-98
AB209861_1(AB209861|pid:none) Homo sapiens mRNA for delta isofor... 292 1e-97
(O04376) RecName: Full=Serine/threonine protein phosphatase 2A 5... 301 4e-97
CR382138_74(CR382138|pid:none) Debaryomyces hansenii strain CBS7... 279 5e-96
BX510324_1(BX510324|pid:none) Zebrafish DNA sequence from clone ... 294 8e-96
CP000499_459(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 278 1e-95
S79635_1(S79635|pid:none) SCS1=SCS1 product [Saccharomyces cerev... 273 1e-95
(P38903) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 273 1e-95
U06630_1(U06630|pid:none) Saccharomyces cerevisiae ROX3 suppress... 273 2e-95
AE016818_13(AE016818|pid:none) Ashbya gossypii (= Eremothecium g... 274 2e-95
AK171041_1(AK171041|pid:none) Mus musculus NOD-derived CD11c +ve... 303 1e-94
(Q28647) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 302 2e-94
CU928168_120(CU928168|pid:none) Kluyveromyces thermotolerans str... 272 6e-94
CU928179_50(CU928179|pid:none) Zygosaccharomyces rouxii strain C... 272 1e-93
CR382126_351(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 272 1e-93
AY085069_1(AY085069|pid:none) Arabidopsis thaliana clone 126195 ... 300 1e-93
AM432194_3(AM432194|pid:none) Vitis vinifera contig VV78X256140.... 293 6e-93
AJ312315_1(AJ312315|pid:none) Oryza sativa putative B'teta gene ... 301 4e-92
BT054059_1(BT054059|pid:none) Zea mays full-length cDNA clone ZM... 301 2e-91
BT085827_1(BT085827|pid:none) Zea mays full-length cDNA clone ZM... 298 3e-91
AL161541_18(AL161541|pid:none) Arabidopsis thaliana DNA chromoso... 293 4e-91
BT067893_1(BT067893|pid:none) Zea mays full-length cDNA clone ZM... 305 4e-91
AY940683_1(AY940683|pid:none) Zea mays protein phosphatase 2A re... 299 4e-91
EF147545_1(EF147545|pid:none) Populus trichocarpa clone WS0123_F... 289 6e-91
(P78759) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 276 1e-90
AC087412_3(AC087412|pid:none) Oryza sativa chromosome 3 BAC OSJN... 305 1e-90
CR954207_422(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 288 1e-90
(Q9LVE2) RecName: Full=Serine/threonine protein phosphatase 2A 5... 293 2e-90
AY093761_1(AY093761|pid:none) Arabidopsis thaliana AT4g15410/dl3... 291 2e-90
(O04375) RecName: Full=Serine/threonine protein phosphatase 2A 5... 289 4e-90
AL442114_3(AL442114|pid:none) Oryza sativa genomic DNA, chromoso... 295 5e-90
AK103052_1(AK103052|pid:none) Oryza sativa Japonica Group cDNA c... 295 6e-90
AK316430_1(AK316430|pid:none) Homo sapiens cDNA, FLJ79329 comple... 313 2e-89
EU961577_1(EU961577|pid:none) Zea mays clone 236679 transposon p... 288 2e-89
BT065064_1(BT065064|pid:none) Zea mays full-length cDNA clone ZM... 287 3e-89
BT063147_1(BT063147|pid:none) Zea mays full-length cDNA clone ZM... 287 3e-89
BT041831_1(BT041831|pid:none) Zea mays full-length cDNA clone ZM... 294 3e-88
BT053972_1(BT053972|pid:none) Zea mays full-length cDNA clone ZM... 300 4e-88
BT054503_1(BT054503|pid:none) Zea mays full-length cDNA clone ZM... 284 1e-87
AC146722_21(AC146722|pid:none) Medicago truncatula clone mth2-23... 286 2e-87
(Q93YV6) RecName: Full=Serine/threonine protein phosphatase 2A 5... 290 2e-87
AC144738_18(AC144738|pid:none) Oryza sativa (japonica cultivar-g... 293 2e-86
D89107_1(D89107|pid:none) Schizosaccharomyces pombe mRNA, partia... 276 5e-86
AB173675_1(AB173675|pid:none) Macaca fascicularis brain cDNA clo... 253 3e-84
(Q9ZQY6) RecName: Full=Serine/threonine protein phosphatase 2A 5... 281 8e-82
AM456538_3(AM456538|pid:none) Vitis vinifera contig VV78X145138.... 300 2e-79
CR940347_1073(CR940347|pid:none) Theileria annulata strain Ankar... 260 5e-78
AP008211_1900(AP008211|pid:none) Oryza sativa (japonica cultivar... 248 2e-76
U49728_1(U49728|pid:none) Mus musculus protein phosphatase 2A su... 289 3e-76
EU330419_1(EU330419|pid:none) Carassius auratus protein phosphat... 281 6e-74
BX248254_1(BX248254|pid:none) human full-length cDNA clone CS0DF... 276 1e-72
FN357585_14(FN357585|pid:none) Schistosoma mansoni genome sequen... 238 2e-72
AM470887_2(AM470887|pid:none) Vitis vinifera contig VV78X145148.... 227 6e-66
AB209289_1(AB209289|pid:none) Homo sapiens mRNA for beta isoform... 160 7e-52
AB173815_1(AB173815|pid:none) Macaca fascicularis brain cDNA clo... 160 1e-47
BT022344_1(BT022344|pid:none) Drosophila melanogaster IP11306 fu... 138 8e-31
AE014298_2583(AE014298|pid:none) Drosophila melanogaster chromos... 132 6e-29
AP008207_459(AP008207|pid:none) Oryza sativa (japonica cultivar-... 120 2e-25
AB168931_1(AB168931|pid:none) Macaca fascicularis testis cDNA, c... 95 4e-24
DQ148953_1(DQ148953|pid:none) Sus scrofa protein phosphatase 2A ... 110 6e-24
BX510320_4(BX510320|pid:none) Zebrafish DNA sequence from clone ... 112 5e-23
AB170581_1(AB170581|pid:none) Macaca fascicularis brain cDNA clo... 110 2e-22
AC096782_1(AC096782|pid:none) Oryza sativa chromosome 10 BAC OSJ... 104 1e-20
(Q28654) RecName: Full=Serine/threonine-protein phosphatase 2A 5... 77 2e-14
AY389498_1(AY389498|pid:none) Mus musculus protein phosphatase 2... 78 1e-12
AJ821837_1(AJ821837|pid:none) Guillardia theta partial mRNA for ... 77 2e-12
EU217367_1(EU217367|pid:none) Drosophila melanogaster strain ZW1... 77 2e-12
EU217378_1(EU217378|pid:none) Drosophila melanogaster strain ZW1... 76 4e-12
EU183213_1(EU183213|pid:none) Caenorhabditis remanei protein pho... 76 5e-12
AJ272423_1(AJ272423|pid:none) Oryza sativa partial mRNA for puta... 70 2e-10
CT025862_2(CT025862|pid:none) Zebrafish DNA sequence from clone ... 70 4e-10
AM475345_1(AM475345|pid:none) Vitis vinifera contig VV78X041966.... 49 6e-04
CP000685_4555(CP000685|pid:none) Flavobacterium johnsoniae UW101... 40 0.39
AC091122_15(AC091122|pid:none) Oryza sativa chromosome 10 BAC OS... 39 0.51
BC009163_1(BC009163|pid:none) Mus musculus protein phosphatase 2... 38 1.1
AC079736_1(AC079736|pid:none) Oryza sativa (japonica cultivar-gr... 36 4.3
FJ392643_1(FJ392643|pid:none) Danio rerio protein phosphatase 2 ... 36 5.6

>AE017348_115(AE017348|pid:none) Cryptococcus neoformans var.
neoformans JEC21 chromosome 8, complete sequence.
Length = 705

Score = 324 bits (831), Expect(2) = e-112
Identities = 152/276 (55%), Positives = 207/276 (75%)
Frame = +2

Query: 659 PHIQVVYEVLLRFIDSPTFNTHIAKNYVDDRFVLQMLDLFDSEDPRERDYLKTTLHRIYG 838
PH+Q+VYE LRF++SP FNT+I K Y+D FVLQ+L+LFDSEDPRERD+LKTTLHRIYG
Sbjct: 267 PHLQIVYEFFLRFVESPDFNTNIGKRYIDQSFVLQLLELFDSEDPRERDFLKTTLHRIYG 326

Query: 839 KFLGLRGFIRTAIRNLFCTFVYESHQHNGISEILEVLGSIINGFLVPLKDEHKQFLIKVL 1018
KFL LR FIR +I ++F FVYE+ +HNGI+E+LE+LGSIINGF +PLK+EHK FL + L
Sbjct: 327 KFLNLRAFIRRSISHVFFQFVYETERHNGIAELLEILGSIINGFALPLKEEHKTFLTRAL 386

Query: 1019 IPLHKPKSYSVYCSHLGYCMSQFIEKEPSLAEPIFKSILRLWPCGNSQKEVLFLSEMEDL 1198
IPLHK KS ++Y L YC+ QF+EK+P+L E + +LR WP NS KEV+FL+E+E++
Sbjct: 387 IPLHKAKSLALYHPQLAYCVVQFLEKDPALTEEVVLGLLRYWPKVNSPKEVMFLNEVEEI 446

Query: 1199 LGLVSDEQFAKFRNQFFRQMTKCFQSEHFQVAERALYLFSNENIVLLIASKNNFTLALET 1378
L ++ +F K F Q+ +C S HFQVAERALY ++NE IV L+ + ++ L
Sbjct: 447 LDVIEHNEFIKIMQPLFVQLARCINSAHFQVAERALYYWNNEYIVNLMG--EHISIILPI 504

Query: 1379 FYKPLHENSISHWNRSIRNLSISSLKLFMEIDMDLF 1486
+ L++NS +HWNR+I + ++LKLFMEI+ ++F
Sbjct: 505 VFPALYQNSKTHWNRTIHGMVYNALKLFMEINQEVF 540

Score = 105 bits (263), Expect(2) = e-112
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +3

Query: 297 RKSYSSRFHEKPQGELTKIANFQDVSPEERPSLFLLKLKQCCYVYDFSD-NTYMVSKGVK 473
RK SSRF+ + E+ K+ NF DV PE+R LF+ KL+QC V+DF+D ++ + K +K
Sbjct: 145 RKQRSSRFYVTEKVEIEKLPNFADVRPEQRNELFVQKLQQCRVVFDFNDASSDLEGKQIK 204

Query: 474 QEALLQCVNFLSTNDQPLHESIYKMVFEMVAVNLFRPLPPRINPYGVMYDPEEDEPIL 647
+ L + + ++++ + ESIY V M A NLFR +PP++NP G +DPEEDEP+L
Sbjct: 205 SQTLHEMLEYITSQRGVITESIYPEVVSMFATNLFRSIPPQVNPTGDAFDPEEDEPVL 262

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,526,485,125
Number of extensions: 47980025
Number of successful extensions: 111003
Number of sequences better than 10.0: 144
Number of HSP's gapped: 110729
Number of HSP's successfully gapped: 275
Length of query: 636
Length of database: 1,040,966,779
Length adjustment: 135
Effective length of query: 501
Effective length of database: 608,388,304
Effective search space: 304802540304
Effective search space used: 304802540304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.26 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.16
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for Contig-U11045-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 2
AH (FL, L) 4
AF (FL, S) 3
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 11
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0