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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11012-1
Contig ID Contig-U11012-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11012-1 (Contig-U11012-1Q) /CSM_Contig/Contig-U11012-1Q.Seq.d
AATTAACATGTACATAAAAAATAATTATAGTGGGTGTATTAATTAATATT
TGAATATTTATTAAAAAGTTATCATTAAAAATTTTGTATATAGGAAAAAA
AAAAAAAATAAATAATAAAAAAAAAATAATAATAAAAACAATAACAACAA
TTAAGTAAAATCGCAATTGTATATAGTAATAATAATATCATTATAGTTAT
ATTTAAATTTATTTTTTAAACAAAAAAATAAAAAAAAAAAAAATTATATG
ATTGAAACTGAAAATTCATCCAAAACAATGTTCCAACAAAGAACTAAATT
GGAACAAAAATTAGTGAAAAAAAGAAAAGAAGATAAAGAAAAAAACAATG
AAAAAGTATCAATTGAATCATCAACATCAAAAACAACATCAACTTTCAAA
GTAAAAAAAGGTGGATTTGATGATGATAAAAGCTCAATTGGTGAACCACC
TCATTCACCATCATTAGACAGATTCTCATCAACTTCAAAACCAAGAGAAA
GTATTTTAACTACACCACAAACTGATATTG----------TATGATTGCT
CCAACATTAGTATTTGAAACTCAATTCCCAAGAACAAAATCAATTAGATA
CTCTTATATTTTAAAGGAAACTTTAGCTGCAACTGGTGCATTTTTAATGT
TTTATGTTGTTTTATGTAAAACAGGACCAATTTATAAACAAATTGATTCA
TTACCATTAATAATTTTATTATTAAAATTATCATTACCATCAATGAGTTT
ATGGATGTTAGGATTTTATGGAGTATTTCATTGTTTATTGAATATATTTG
CAGAAGTAACAAGATATGCAGATCGTGAATTTTATCAAGATTGGTGGAAT
GCTACAACTTTTGATATGTGGTGGAGAAAATGGAATAGACCAGTTCATAA
ATGGATGTTACGTCATGTATATAGAGATTCAATGCACACTGTAAAATTAA
ATAAATTTGGTGCACTATTTTCAACTTTTCTATTATCAGCATTACTTCAT
GAATTTGTAATGATCATATCATTTAGATTCATTAGACCAATTTTATCAAC
AACAATGTTATTACAAATTGGTTTAGTAAATTTCACACAATTAGATATTT
TACAAAAAACCAGATTTGGTAATGTTGTAATGTGGATAACTGTATTCGTA
GGTCAACCTCTTGTTCAATTATTATATTCAACTCAATACAGTGCTTTAGT
TTGGAATAATGGTCCATAAAAAAAGTTTGGAATAATAGTCAATAAATATT
ATTTTTAATAATAATAATAATAATAAATATTAAAATAAAATAAAAATAAA
ATAAAAAGCAATTGTTTAAATAT
Gap gap included
Contig length 1313
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5501873
End point 5503196
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 10
Link to clone list U11012
List of clone(s) 

est1=VHN630F,1,104
est2=SSC678F,17,407
est3=SLD465F,78,395
est4=AFK391F,131,239
est5=SLG473F,230,531
est6=AFK391Z,532,1276
est7=AFI702Z,617,1215
est8=SFJ891Z,617,1237
est9=SSC678Z,781,1229
est10=SLD465Z,812,1315
Translated Amino Acid sequence 
inmyiknnysgcin*ylniy*kviiknfvyrkkkknk**kknnnknnnnn*vksqlyivi
iisl*LYLNLFFKQKNKKKKNYMIETENSSKTMFQQRTKLEQKLVKKRKEDKEKNNEKVS
IESSTSKTTSTFKVKKGGFDDDKSSIGEPPHSPSLDRFSSTSKPRESILTTPQTDI---

---MIAPTLVFETQFPRTKSIRYSYILKETLAATGAFLMFYVVLCKTGPIYKQIDSLPLI
ILLLKLSLPSMSLWMLGFYGVFHCLLNIFAEVTRYADREFYQDWWNATTFDMWWRKWNRP
VHKWMLRHVYRDSMHTVKLNKFGALFSTFLLSALLHEFVMIISFRFIRPILSTTMLLQIG
LVNFTQLDILQKTRFGNVVMWITVFVGQPLVQLLYSTQYSALVWNNGP*kkfgiivnkyy
f*******ilk*nknkiksncln
Translated Amino Acid sequence (All Frames) 
Frame A:
n*hvhkk*l*wvy*lifeyllksyh*kfci*ekkkk*iikkk***kq*qqlskiaivysn
nniiivifkfif*tkk*kkkklyd*n*kfiqnnvptkn*igtkisekkkrr*rkkq*ksi
n*iiniknninfqskkrwi****klnw*ttsftiirqilinfktkrkyfnyttn*y---

---ydcsnisi*nsipknkin*illyfkgnfscnwcifnvlccfm*nrtnl*tn*fitin
nfiikiiitinefmdvrilwsislfieyicrsnkicrs*ilsrlvecynf*yvvekme*t
ss*mdvtsci*rfnahckik*iwctifnfsiisits*icndhii*ih*tnfinnnvitnw
fskfhtiryftknqiw*ccnvdncirrstscsiiifnsiqcfsle*wsikkvwnnsq*il
fliiiiiinikik*k*nkkqlfky

Frame B:
inmyiknnysgcin*ylniy*kviiknfvyrkkkknk**kknnnknnnnn*vksqlyivi
iisl*LYLNLFFKQKNKKKKNYMIETENSSKTMFQQRTKLEQKLVKKRKEDKEKNNEKVS
IESSTSKTTSTFKVKKGGFDDDKSSIGEPPHSPSLDRFSSTSKPRESILTTPQTDI---

---MIAPTLVFETQFPRTKSIRYSYILKETLAATGAFLMFYVVLCKTGPIYKQIDSLPLI
ILLLKLSLPSMSLWMLGFYGVFHCLLNIFAEVTRYADREFYQDWWNATTFDMWWRKWNRP
VHKWMLRHVYRDSMHTVKLNKFGALFSTFLLSALLHEFVMIISFRFIRPILSTTMLLQIG
LVNFTQLDILQKTRFGNVVMWITVFVGQPLVQLLYSTQYSALVWNNGP*kkfgiivnkyy
f*******ilk*nknkiksncln

Frame C:
ltct*kiiivgvlini*ifikklslkilyigkkkkinnkkkiiiktittik*nrnci***
*yhysyi*iyflnkkikkkkii*lklkihpkqcsnkelnwnkn**kkekkikkktmkkyq
lnhqhqkqhqlsk*kkvdlmmikaqlvnhlihhh*tdshqlqnqekvf*lhhklil---

---*llqh*ylklnsqeqnqldtlif*rkl*lqlvhf*cfmlfyvkqdqfinklihyh**
fyy*nyhyhq*vygc*dfmeyfivy*iylqk*qdmqivnfikiggmlqllicggengidq
fingcyvmyieiqctl*n*inlvhyfqlfyyqhyfmnl**syhldsldqfyqqqcyyklv
**ishn*ifykkpdlvml*cg*lys*vnllfnyyiqlntvl*fgimvhkksle**sinii
fnnnnnnky*nkikik*kaiv*i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11012-1 (Contig-U11012-1Q)
/CSM_Contig/Contig-U11012-1Q.Seq.d
         (1323 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11012-1 (Contig-U11012-1Q) /CSM_Contig/Conti...  1628  0.0
Contig-U10419-1 (Contig-U10419-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U09415-1 (Contig-U09415-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09165-1 (Contig-U09165-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U04524-1 (Contig-U04524-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U01366-1 (Contig-U01366-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14800-1 (Contig-U14800-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13393-1 (Contig-U13393-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12323-1 (Contig-U12323-1Q) /CSM_Contig/Conti...    38  0.024

>Contig-U11012-1 (Contig-U11012-1Q) /CSM_Contig/Contig-U11012-1Q.Seq.d
          Length = 1323

 Score = 1628 bits (821), Expect = 0.0
 Identities = 865/872 (99%)
 Strand = Plus / Plus

                                                                        
Query: 346  caatgaaaaagtatcaattgaatcatcaacatcaaaaacaacatcaactttcaaagtnnn 405
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 346  caatgaaaaagtatcaattgaatcatcaacatcaaaaacaacatcaactttcaaagtaaa 405

                                                                        
Query: 406  nnnnggtggatttgatgatgataaaagctcaattggtgaaccacctcattcaccatcatt 465
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406  aaaaggtggatttgatgatgataaaagctcaattggtgaaccacctcattcaccatcatt 465

                                                                        
Query: 466  agacagattctcatcaacttcaaaaccaagagaaagtattttaactacaccacaaactga 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466  agacagattctcatcaacttcaaaaccaagagaaagtattttaactacaccacaaactga 525

                                                                        
Query: 526  tattgnnnnnnnnnntatgattgctccaacattagtatttgaaactcaattcccaagaac 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526  tattgnnnnnnnnnntatgattgctccaacattagtatttgaaactcaattcccaagaac 585

                                                                        
Query: 586  aaaatcaattagatactcttatattttaaaggaaactttagctgcaactggtgcattttt 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  aaaatcaattagatactcttatattttaaaggaaactttagctgcaactggtgcattttt 645

                                                                        
Query: 646  aatgttttatgttgttttatgtaaaacaggaccaatttataaacaaattgattcattacc 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  aatgttttatgttgttttatgtaaaacaggaccaatttataaacaaattgattcattacc 705

                                                                        
Query: 706  attaataattttattattaaaattatcattaccatcaatgagtttatggatgttaggatt 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  attaataattttattattaaaattatcattaccatcaatgagtttatggatgttaggatt 765

                                                                        
Query: 766  ttatggagtatttcattgtttattgaatatatttgcagaagtaacaagatatgcagatcg 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  ttatggagtatttcattgtttattgaatatatttgcagaagtaacaagatatgcagatcg 825

                                                                        
Query: 826  tgaattttatcaagattggtggaatgctacaacttttgatatgtggtggagaaaatggaa 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  tgaattttatcaagattggtggaatgctacaacttttgatatgtggtggagaaaatggaa 885

                                                                        
Query: 886  tagaccagttcataaatggatgttacgtcatgtatatagagattcaatgcacactgtaaa 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  tagaccagttcataaatggatgttacgtcatgtatatagagattcaatgcacactgtaaa 945

                                                                        
Query: 946  attaaataaatttggtgcactattttcaacttttctattatcagcattacttcatgaatt 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  attaaataaatttggtgcactattttcaacttttctattatcagcattacttcatgaatt 1005

                                                                        
Query: 1006 tgtaatgatcatatcatttagattcattagaccaattttatcaacaacaatgttattaca 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tgtaatgatcatatcatttagattcattagaccaattttatcaacaacaatgttattaca 1065

                                                                        
Query: 1066 aattggtttagtaaatttcacacaattagatattttacaaaaaaccagatttggtaatgt 1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 aattggtttagtaaatttcacacaattagatattttacaaaaaaccagatttggtaatgt 1125

                                                                        
Query: 1126 tgtaatgtggataactgtattcgtaggtcaacctcttgttcaattattatattcaactca 1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 tgtaatgtggataactgtattcgtaggtcaacctcttgttcaattattatattcaactca 1185

                                            
Query: 1186 atacagtgctttagtttggaataatggtccat 1217
            ||||||||||||||||||||||||||||||||
Sbjct: 1186 atacagtgctttagtttggaataatggtccat 1217


 Score =  186 bits (94), Expect = 4e-47
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aattaacatgtacataaaaaataattatagtgggtgtattaattaatatttgaatattta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aattaacatgtacataaaaaataattatagtgggtgtattaattaatatttgaatattta 60

                                            
Query: 61 ttaaaaagttatcattaaaaattttgtatatagg 94
          ||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaaaaagttatcattaaaaattttgtatatagg 94


 Score =  165 bits (83), Expect = 2e-40
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                       
Query: 139 caataacaacaattaagtaaaatcgcaattgtatatagtaataataatatcattatagtt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 caataacaacaattaagtaaaatcgcaattgtatatagtaataataatatcattatagtt 198

                                  
Query: 199 atatttaaatttattttttaaac 221
           |||||||||||||||||||||||
Sbjct: 199 atatttaaatttattttttaaac 221


 Score =  125 bits (63), Expect = 1e-28
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                       
Query: 244 ttatatgattgaaactgaaaattcatccaaaacaatgttccaacaaagaactaaattgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttatatgattgaaactgaaaattcatccaaaacaatgttccaacaaagaactaaattgga 303

              
Query: 304 aca 306
           |||
Sbjct: 304 aca 306


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1308 gcaattgtttaaatat 1323
            ||||||||||||||||
Sbjct: 1308 gcaattgtttaaatat 1323


>Contig-U10419-1 (Contig-U10419-1Q) /CSM_Contig/Contig-U10419-1Q.Seq.d
          Length = 622

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 476 tcatcaacttcaaaaccaagagaaa 500
           |||| ||||||||||||||||||||
Sbjct: 550 tcattaacttcaaaaccaagagaaa 526


>Contig-U09415-1 (Contig-U09415-1Q) /CSM_Contig/Contig-U09415-1Q.Seq.d
          Length = 839

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 712 aattttattattaaaattat 731
           ||||||||||||||||||||
Sbjct: 25  aattttattattaaaattat 44


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 169 gtatatagtaataataata 187
           ||||||| |||||||||||
Sbjct: 52  gtatataataataataata 70


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,026
Number of Sequences: 6905
Number of extensions: 40026
Number of successful extensions: 4714
Number of sequences better than 10.0: 754
length of query: 1323
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1307
effective length of database: 5,564,391
effective search space: 7272659037
effective search space used: 7272659037
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U11012-1 (Contig-U11012-1Q) /CSM_Contig/Contig-U11012-1Q.Seq.d
         (1323 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ345163) Dictyostelium discoideum cDNA clone:dda21f23, 3' ...  1342   0.0    1
(BJ344289) Dictyostelium discoideum cDNA clone:dda18d01, 3' ...  1158   0.0    1
(BJ402201) Dictyostelium discoideum cDNA clone:dds20f24, 3' ...  1142   0.0    1
(BJ346527) Dictyostelium discoideum cDNA clone:dda24a09, 3' ...   850   0.0    1
(C85038) Dictyostelium discoideum slug cDNA, clone SSC678.        835   0.0    1
(AU052522) Dictyostelium discoideum slug cDNA, clone SLD465.      787   0.0    2
(AU061883) Dictyostelium discoideum slug cDNA, clone SLG473.      238   1e-76  2
(AU061169) Dictyostelium discoideum slug cDNA, clone SLD465.       88   3e-27  2
(AU071879) Dictyostelium discoideum slug cDNA, clone SSC678.       68   3e-13  3
(CV090396) CA1362 cDNA cold acclimated Bluecrop library Vacc...    46   7e-08  2
(EL364803) CCEM9322.b1_D03.ab1 CCE(LMS) endive Cichorium end...    58   3e-07  2
(BJ329223) Dictyostelium discoideum cDNA clone:dda24a09, 5' ...    68   9e-07  1
(BJ327798) Dictyostelium discoideum cDNA clone:dda21f23, 5' ...    68   9e-07  1
(EF653276) Vernonia galamensis type 1 diaclyglycerol acyltra...    56   1e-06  2
(EL379992) CFFM17185.b1_B02.ab1 CFF(LMS) safflower Carthamus...    48   2e-04  2
(EY402985) pOP-CNH02674_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb...    48   2e-04  2
(AF251794) Brassica napus putative diacylglycerol acyltransf...    40   8e-04  2
(DQ016107) Brassica juncea diacylglycerol acyltransferase DG...    40   8e-04  2
(CO485885) GQ02010.B7_J23 GQ020: Clean ROOTS systems -Diurna...    40   8e-04  2
(DC220685) Plasmodium berghei strain ANKA cDNA clone:MZ00302...    44   8e-04  2
(EX443240) GQ04107.B7_L15 GQ041 - Shoot tip - Dormant (Norma...    40   8e-04  2
(EE403376) 16ACDHDS_UP_022_C10_26OCT2004_076 Brassica napus ...    40   8e-04  2
(FG578278) BN24DYSC_UP_090_E05_8FEB2008_039 BN24DYSC Brassic...    40   8e-04  2
(DY974522) CLSM8197.b1_J09.ab1 CLS(LMS) lettuce sativa Lactu...    58   9e-04  1
(BJ426255) Dictyostelium discoideum cDNA clone:ddv58k08, 5' ...    58   9e-04  1
(FG486808) 021106KAUB001951HT (KAUB) Actinidia chinensis CK5...    44   0.003  2
(AL034559) Plasmodium falciparum MAL3P7.                           36   0.009  9
(AY054480) Arabidopsis thaliana diacylglycerol O-acyltransfe...    40   0.011  2
(AJ131831) Arabidopsis thaliana mRNA for diacylglycerol O-ac...    40   0.011  2
(EA496729) Sequence 23 from patent US 7355097.                     40   0.011  2
(AR800098) Sequence 23 from patent US 7015373.                     40   0.011  2
(EA053345) Sequence 42 from patent US 7157619.                     40   0.011  2
(EA053342) Sequence 38 from patent US 7157619.                     40   0.011  2
(DI052739) PLANT STEROL ACYLTRANSFERASES.                          40   0.011  2
(DI016788) PLANT STEROL ACYLTRANSFERASES.                          40   0.011  2
(BD298884) Plant sterol acyltransferases.                          40   0.011  2
(BD298881) Plant sterol acyltransferases.                          40   0.011  2
(BD241844) Acyl CoA:cholesterol acyltransferase related nucl...    40   0.011  2
(AX090349) Sequence 42 from Patent WO0116308.                      40   0.011  2
(AX090345) Sequence 38 from Patent WO0116308.                      40   0.011  2
(AR875720) Sequence 1 from patent US 7041872.                      40   0.011  2
(AR227739) Sequence 1 from patent US 6444876.                      40   0.011  2
(AJ238008) Arabidopsis thaliana mRNA for diacylglycerol acyl...    40   0.011  2
(EA496715) Sequence 1 from patent US 7355097.                      40   0.011  2
(AR800084) Sequence 1 from patent US 7015373.                      40   0.011  2
(AF051849) Arabidopsis thaliana diacylglycerol acyltransfera...    40   0.011  2
(BT008883) Arabidopsis thaliana At2g19450 mRNA, complete cds.      40   0.011  2
(EF653277) Vernonia galamensis type 1 diaclyglycerol acyltra...    52   0.039  2
(EV171792) 0152897 Brassica napus Etiolated seedlings (Uni-Z...    36   0.044  2
(EV171810) 0152976 Brassica napus Etiolated seedlings (Uni-Z...    36   0.044  2
(DT466441) GH_CHX18O02.f GH_CHX Gossypium hirsutum cDNA clon...    38   0.044  2
(EV208041) 0176748 Brassica napus Leaf - drought Brassica na...    36   0.044  2
(EV219804) 0134912 Brassica napus Root - drought Brassica na...    36   0.044  2
(EV131312) 0163828 Brassica napus Flower Brassica napus cDNA...    36   0.044  2
(ER793512) PPTIG56TR Solanum tuberosum RHPOTKEY BAC ends Sol...    34   0.050  3
(CU861552) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.055  1
(CV511786) kc48a07.y11 Xiphinema index CSEQDA01 Xiphinema in...    52   0.055  1
(BI502783) BB170007B20G02.5 Bee Brain Normalized/Subtracted ...    52   0.055  1
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co...    34   0.066  6
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   0.088  11
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   0.11   11
(Z98551) Plasmodium falciparum MAL3P6.                             46   0.12   8
(CC964005) BOIFC73TF BO_1.4_1.6_KB_nuc Brassica oleracea gen...    40   0.16   2
(AY858584) Oryza sativa (japonica cultivar-group) diacylglyc...    34   0.16   2
(CB660599) OSJNEd02I18.f OSJNEd Oryza sativa Japonica Group ...    34   0.16   2
(CB660636) OSJNEd02J19.f OSJNEd Oryza sativa Japonica Group ...    34   0.16   2
(CB660600) OSJNEd02I18.r OSJNEd Oryza sativa Japonica Group ...    34   0.16   2
(CB619078) OSIIEa03G07.r OSIIEa Oryza sativa Indica Group cD...    34   0.16   2
(CB651490) OSJNEb16H13.f OSJNEb Oryza sativa Japonica Group ...    34   0.16   2
(FD952257) RS3GJ94JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    36   0.16   2
(CB651491) OSJNEb16H13.r OSJNEb Oryza sativa Japonica Group ...    34   0.16   2
(EI507873) MUGQ_CH252P226P17T7_CN379_065 CHORI-252 Vervet Mo...    34   0.16   2
(CB646515) OSJNEb09A21.r OSJNEb Oryza sativa Japonica Group ...    34   0.16   2
(EL431447) CHCS5925.b1_J17.ab1 CHC(LMS) Texas blueweed Helia...    40   0.16   2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    40   0.17   19
(EU365382) Solanum pimpinellifolium cultivar LA1589 CRT bind...    32   0.19   6
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.20   14
(AY456264) Schistosoma mansoni Ftz-F1 interacting protein mR...    50   0.22   1
(EK349130) 1095467737270 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.22   1
(EJ967691) 1093022055521 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.22   1
(EJ941653) 1093018870172 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.22   1
(EI484196) PV_GBa0097N16.f PV_GBa Phaseolus vulgaris genomic...    50   0.22   1
(CD199187) MS1-0108U-D293-B07-U.B MS1-0108 Schistosoma manso...    50   0.22   1
(CR954246) Pseudoalteromonas haloplanktis str. TAC125 chromo...    50   0.22   1
(CP000425) Lactococcus lactis subsp. cremoris SK11, complete...    50   0.22   1
(AM406671) Lactococcus lactis subsp. cremoris MG1363, comple...    50   0.22   1
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   0.22   12
(AP009358) Solanum lycopersicum genomic DNA, chromosome 8, c...    38   0.22   7
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   0.23   12
(EK286043) 1095462313342 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.27   2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.29   13
(CU606971) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.39   6
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.39   12
(AM475600) Vitis vinifera contig VV78X167275.3, whole genome...    42   0.40   3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.42   13
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.42   16
(AC196741) Citrus sinensis clone CSRBBa-002G12, WORKING DRAF...    38   0.43   6
(CR391961) Zebrafish DNA sequence from clone DKEY-44G17 in l...    36   0.46   2
(AC027221) Homo sapiens clone RP11-23F1, *** SEQUENCING IN P...    34   0.47   2
(AC011958) Homo sapiens chromosome 18 clone RP11-223G18 map ...    34   0.47   2

>(BJ345163) Dictyostelium discoideum cDNA clone:dda21f23, 3' end,
            single read.
          Length = 745

 Score = 1342 bits (677), Expect = 0.0
 Identities = 677/677 (100%)
 Strand = Plus / Minus


Query: 541  tatgattgctccaacattagtatttgaaactcaattcccaagaacaaaatcaattagata 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  tatgattgctccaacattagtatttgaaactcaattcccaagaacaaaatcaattagata 686


Query: 601  ctcttatattttaaaggaaactttagctgcaactggtgcatttttaatgttttatgttgt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  ctcttatattttaaaggaaactttagctgcaactggtgcatttttaatgttttatgttgt 626


Query: 661  tttatgtaaaacaggaccaatttataaacaaattgattcattaccattaataattttatt 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  tttatgtaaaacaggaccaatttataaacaaattgattcattaccattaataattttatt 566


Query: 721  attaaaattatcattaccatcaatgagtttatggatgttaggattttatggagtatttca 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565  attaaaattatcattaccatcaatgagtttatggatgttaggattttatggagtatttca 506


Query: 781  ttgtttattgaatatatttgcagaagtaacaagatatgcagatcgtgaattttatcaaga 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505  ttgtttattgaatatatttgcagaagtaacaagatatgcagatcgtgaattttatcaaga 446


Query: 841  ttggtggaatgctacaacttttgatatgtggtggagaaaatggaatagaccagttcataa 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445  ttggtggaatgctacaacttttgatatgtggtggagaaaatggaatagaccagttcataa 386


Query: 901  atggatgttacgtcatgtatatagagattcaatgcacactgtaaaattaaataaatttgg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385  atggatgttacgtcatgtatatagagattcaatgcacactgtaaaattaaataaatttgg 326


Query: 961  tgcactattttcaacttttctattatcagcattacttcatgaatttgtaatgatcatatc 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325  tgcactattttcaacttttctattatcagcattacttcatgaatttgtaatgatcatatc 266


Query: 1021 atttagattcattagaccaattttatcaacaacaatgttattacaaattggtttagtaaa 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265  atttagattcattagaccaattttatcaacaacaatgttattacaaattggtttagtaaa 206


Query: 1081 tttcacacaattagatattttacaaaaaaccagatttggtaatgttgtaatgtggataac 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205  tttcacacaattagatattttacaaaaaaccagatttggtaatgttgtaatgtggataac 146


Query: 1141 tgtattcgtaggtcaacctcttgttcaattattatattcaactcaatacagtgctttagt 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145  tgtattcgtaggtcaacctcttgttcaattattatattcaactcaatacagtgctttagt 86


Query: 1201 ttggaataatggtccat 1217
            |||||||||||||||||
Sbjct: 85   ttggaataatggtccat 69

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,296,592,579
Number of extensions: 87693305
Number of successful extensions: 8135497
Number of sequences better than 10.0: 266
Length of query: 1323
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1299
Effective length of database: 97,308,875,965
Effective search space: 126404229878535
Effective search space used: 126404229878535
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11012-1 (Contig-U11012-1Q) /CSM_Contig/Contig-U11012-1Q.Seq.d
         (1323 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017346_115(AE017346|pid:none) Cryptococcus neoformans var. neo...   129   3e-28
AM920428_546(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   126   2e-27
BC160415_1(BC160415|pid:none) Xenopus tropicalis hypothetical pr...   125   3e-27
BC077916_1(BC077916|pid:none) Xenopus laevis sterol O-acyltransf...   125   3e-27
CR450721_1(CR450721|pid:none) Zebrafish DNA sequence from clone ...   122   4e-26
BC169163_1(BC169163|pid:none) Xenopus tropicalis cDNA clone MGC:...   119   2e-25
(P53629) RecName: Full=Sterol O-acyltransferase 2;          EC=2...   119   2e-25
AY562995_1(AY562995|pid:none) Toxoplasma gondii acyl-CoA:cholest...   119   2e-25
(Q10269) RecName: Full=Probable sterol O-acyltransferase 1;     ...   119   3e-25
U55383_1(U55383|pid:none) Saccharomyces cerevisiae acyl-coA:ster...   118   4e-25
DQ460707_1(DQ460707|pid:none) Schistosoma mansoni acyl-CoA: chol...   118   5e-25
AB062759_1(AB062759|pid:none) Rattus norvegicus DGAT mRNA for di...   118   5e-25
AB075946_1(AB075946|pid:none) Rattus norvegicus mRNA for AcylCoA...   115   3e-24
(Q7TQM4) RecName: Full=Sterol O-acyltransferase 2;          EC=2...   115   5e-24
EU178818_1(EU178818|pid:none) Ovis aries diacylglycerol acyltran...   114   6e-24
(Q61263) RecName: Full=Sterol O-acyltransferase 1;          EC=2...   114   6e-24
AK142486_1(AK142486|pid:none) Mus musculus 13 days embryo stomac...   114   6e-24
DQ903181_1(DQ903181|pid:none) Mus musculus sterol O-acyltransfer...   114   6e-24
AK052299_1(AK052299|pid:none) Mus musculus 13 days embryo heart ...   114   6e-24
(Q9GMF1) RecName: Full=Diacylglycerol O-acyltransferase 1;      ...   114   8e-24
BC006263_1(BC006263|pid:none) Homo sapiens diacylglycerol O-acyl...   114   1e-23
AF354623_1(AF354623|pid:none) Pongo pygmaeus cholesterol acyltra...   114   1e-23
CS340699_1(CS340699|pid:none) Sequence 1 from Patent WO2006067071.    114   1e-23
BC118146_1(BC118146|pid:none) Bos taurus diacylglycerol O-acyltr...   114   1e-23
(O75907) RecName: Full=Diacylglycerol O-acyltransferase 1;      ...   114   1e-23
(Q8MK44) RecName: Full=Diacylglycerol O-acyltransferase 1;      ...   114   1e-23
AB282595_1(AB282595|pid:none) Eukaryotic synthetic construct pla...   114   1e-23
EU301803_1(EU301803|pid:none) Ovis aries acylcoenzyme A:diacylgl...   113   1e-23
(Q60457) RecName: Full=Sterol O-acyltransferase 1;          EC=2...   113   1e-23
AF221132_1(AF221132|pid:none) Caenorhabditis elegans diacylglyce...   113   2e-23
T19027(T19027;T23106) probable sterol O-acyltransferase (EC 2.3....   113   2e-23
(O77761) RecName: Full=Sterol O-acyltransferase 1;          EC=2...   113   2e-23
(O77760) RecName: Full=Sterol O-acyltransferase 1;          EC=2...   113   2e-23
A48026(A59038;A48026) sterol O-acyltransferase (EC 2.3.1.26) - h...   112   2e-23
AK300551_1(AK300551|pid:none) Homo sapiens cDNA FLJ50223 complet...   112   2e-23
AK290659_1(AK290659|pid:none) Homo sapiens cDNA FLJ75659 complet...   112   2e-23
DQ891807_1(DQ891807|pid:none) Synthetic construct clone IMAGE:10...   112   2e-23
AK294047_1(AK294047|pid:none) Homo sapiens cDNA FLJ50124 complet...   112   2e-23
CR380959_462(CR380959|pid:none) Candida glabrata strain CBS138 c...   112   4e-23
DQ356679_1(DQ356679|pid:none) Vernicia fordii type 1 diacylglyce...   111   5e-23
CR382132_284(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   111   5e-23
CP000500_594(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...   111   5e-23
AY858584_1(AY858584|pid:none) Oryza sativa (japonica cultivar-gr...   111   7e-23
AK316401_1(AK316401|pid:none) Homo sapiens cDNA, FLJ79300 comple...   111   7e-23
BC025931_1(BC025931|pid:none) Mus musculus sterol O-acyltransfer...   111   7e-23
AJ318490_1(AJ318490|pid:none) Bos taurus dgat gene for Acyl-CoA:...   111   7e-23
AY652765_1(AY652765|pid:none) Glycine max acyl CoA:diacylglycero...   110   9e-23
AY093657_1(AY093657|pid:none) Sus scrofa diacylglycerol acyltran...   110   9e-23
BC063970_1(BC063970|pid:none) Danio rerio diacylglycerol O-acylt...   110   9e-23
AC174465_3(AC174465|pid:none) Medicago truncatula chromosome 2 c...   110   1e-22
CU633455_32(CU633455|pid:none) Podospora anserina genomic DNA ch...   110   1e-22
AM920428_440(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   110   1e-22
AY859489_1(AY859489|pid:none) Lotus japonicus diacylglycerol acy...   109   2e-22
BC096090_1(BC096090|pid:none) Homo sapiens sterol O-acyltransfer...   109   2e-22
CU928165_255(CU928165|pid:none) Kluyveromyces thermotolerans str...   108   6e-22
AY144991_1(AY144991|pid:none) Saccharomyces kluyveri clone Conti...   108   6e-22
BC151492_1(BC151492|pid:none) Bos taurus sterol O-acyltransferas...   108   6e-22
(O77759) RecName: Full=Sterol O-acyltransferase 2;          EC=2...   107   7e-22
AY144910_1(AY144910|pid:none) Saccharomyces castellii clone Cont...   107   7e-22
CR382138_1048(CR382138|pid:none) Debaryomyces hansenii strain CB...   107   1e-21
AY310912_1(AY310912|pid:none) Candida albicans acyl-CoA:sterol a...   107   1e-21
(P84285) RecName: Full=Sterol O-acyltransferase 2;          EC=2...   107   1e-21
DQ016106_1(DQ016106|pid:none) Brassica juncea diacylglycerol acy...   106   2e-21
DQ016107_1(DQ016107|pid:none) Brassica juncea diacylglycerol acy...   106   2e-21
AF298815_1(AF298815|pid:none) Perilla frutescens diacylglycerol ...   105   5e-21
AY751297_1(AY751297|pid:none) Euonymus alatus 1,2-diacyl-sn-glyc...   105   5e-21
(Q876L3) RecName: Full=Sterol O-acyltransferase 1;          EC=2...   104   8e-21
AY366496_1(AY366496|pid:none) Ricinus communis diacylglycerol ac...   104   8e-21
EF653276_1(EF653276|pid:none) Vernonia galamensis type 1 diaclyg...   104   8e-21
DQ380250_1(DQ380250|pid:none) Capra hircus acyl-coenzyme A:diacy...   104   8e-21
AB426893_1(AB426893|pid:none) Kluyveromyces lactis SAT gene for ...   103   1e-20
AM433916_3(AM433916|pid:none) Vitis vinifera contig VV78X101351....   103   1e-20
AE014134_2877(AE014134|pid:none) Drosophila melanogaster chromos...   103   1e-20
AE014134_2878(AE014134|pid:none) Drosophila melanogaster chromos...   103   1e-20
AF468649_1(AF468649|pid:none) Drosophila melanogaster clone 12 a...   103   1e-20
FM992689_625(FM992689|pid:none) Candida dubliniensis CD36 chromo...   103   1e-20
CR382138_1049(CR382138|pid:none) Debaryomyces hansenii strain CB...   103   2e-20
AF251794_1(AF251794|pid:none) Brassica napus putative diacylglyc...   103   2e-20
FN357307_6(FN357307|pid:none) Schistosoma mansoni genome sequenc...   101   5e-20
EF653277_1(EF653277|pid:none) Vernonia galamensis type 1 diaclyg...   101   5e-20
AY812442_1(AY812442|pid:none) Schistosoma japonicum SJCHGC04421 ...   101   5e-20
FN392321_482(FN392321|pid:none) Pichia pastoris GS115 chromosome...   101   5e-20
AL590449_29(AL590449|pid:none) chromosome X of strain GB-M1 of E...    99   4e-19
AB257589_1(AB257589|pid:none) Glycine max GmDGAT1a mRNA for diac...    99   4e-19
AP007171_737(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    97   1e-18
AE016814_251(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    96   4e-18
AP008211_497(AP008211|pid:none) Oryza sativa (japonica cultivar-...    90   2e-16
T01294(T01294)sterol O-acyltransferase homolog F27F23.26 - Arabi...    90   2e-16
BC154253_1(BC154253|pid:none) Danio rerio hypothetical LOC564868...    90   2e-16
AY327327_1(AY327327|pid:none) Toxoplasma gondii acyl-CoA:diacylg...    87   1e-15
AL513463_13(AL513463|pid:none) Neurospora crassa DNA linkage gro...    86   2e-15
(Q9UU82) RecName: Full=Probable sterol O-acyltransferase 2;     ...    85   5e-15
AM883145_1(AM883145|pid:none) Cairina moschata partial mRNA for ...    79   5e-13
CR940347_928(CR940347|pid:none) Theileria annulata strain Ankara...    77   1e-12
AM883124_1(AM883124|pid:none) Anas platyrhynchos partial mRNA fo...    77   2e-12
AP007150_408(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...    76   3e-12
AP008212_1355(AP008212|pid:none) Oryza sativa (japonica cultivar...    66   3e-09
AC116961_1(AC116961|pid:none) Dictyostelium discoideum chromosom...    61   1e-07
DQ016105_1(DQ016105|pid:none) Brassica juncea diacylglycerol acy...    48   7e-04
DQ460708_1(DQ460708|pid:none) Schistosoma mansoni acyl-CoA: chol...    35   4.6

>AE017346_115(AE017346|pid:none) Cryptococcus neoformans var.
            neoformans JEC21 chromosome 6, complete sequence.
          Length = 600

 Score =  129 bits (323), Expect = 3e-28
 Identities = 67/211 (31%), Positives = 113/211 (53%), Gaps = 3/211 (1%)
 Frame = +2

Query: 542  MIAPTLVFETQFPRTKSIRYSYILKETLAATGAFLMFYVVLCK--TGPIYKQIDXXXXXX 715
            M  PTLV++ ++PRT ++R   ++++ +A  G F + Y +        +  + D
Sbjct: 390  MFFPTLVYQLEYPRTDTMRPLVVVEKIIATFGTFSLIYTITEHYIMPLLPTEGDTKSLVK 449

Query: 716  XXXXXXXXXXXXXXXGFYGVFHCLLNIFAEVTRYADREFYQDWWNATTFDMWWRKWNRPV 895
                            FY +F C+   FAE++ +ADREFYQDWWN+T++D + RKWN+PV
Sbjct: 450  SYISLAGPMLLNYLLIFYIIFECVCTGFAELSYFADREFYQDWWNSTSWDEFARKWNKPV 509

Query: 896  HKWMLRHVYRDSMHTVKLNKFGXXXXXXXXXXXXHEFVMIISFRFIRPILSTTMLLQIGL 1075
            H ++LRHVY  +M T++L +              HE VM +  + IRP L    + Q+ +
Sbjct: 510  HTFLLRHVYASTMTTLQLTRTSAAFVTFLLSALCHELVMAVVTKKIRPYLFLMQMAQLPM 569

Query: 1076 VNFTQLDILQKTR-FGNVVMWITVFVGQPLV 1165
            +   +L I+++ +  GN+V W+ +  G PL+
Sbjct: 570  IALGRLPIVRRNKTIGNIVFWMGLMAGFPLL 600

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,412,358,298
Number of extensions: 21954178
Number of successful extensions: 50936
Number of sequences better than 10.0: 100
Number of HSP's gapped: 50818
Number of HSP's successfully gapped: 122
Length of query: 441
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 309
Effective length of database: 618,001,159
Effective search space: 190962358131
Effective search space used: 190962358131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.32  gvh: 0.10  alm: 0.31  top: 0.40  tms: 0.27  mit: 0.31  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U11012-1 is pla
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0