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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11007-1
Contig ID Contig-U11007-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Contig-U11007-1Q.Seq.d
TGACACTAATATAAATACCATTAATGATAACAACAACAATAATAATAACA
ACAATAATAATAACAATAACTCTGTTAATAATAATTTACTTAGTATGTGT
CAAGACCCAACTTTAATCTTACAAATACAACAATTATTATTACAACAACA
ATTGTTACAACAAGCTCAACAACAATCTGTACCATTAAATATTCAAGTAC
CTACAACCACAACACCAATTAATCAACAACATCAAGCTTTATTGGTTCCA
CAACAAAAACAATTTTATGGTAATGTCTCTGATAATTCATCACCAGAAAC
CAATTTTTCATATGCAAGTCCATCTTCACCAAGTTCTACACAACCACAAT
CCTCACCATATGAACAACAACCACTCTCACCAAATCCAACTATATCTTTA
TCATCTAGTATCTCTGTCACTGCTACTACTACCACTAGACCAAATGCCAC
AGAAAAGACTAAAGAATCTTCCTTAAAATCAAAATCTAAATCTAATGAAA
AAGATAAAGAAAGGGAAGATGAAGAAGAAGATGATGATGATAGACCAAAG
AAAAGAAAGAAATTTGATAAAAATGTTTATAAGGGTGTTGATTTAGGTGA
TGAACTATTAGAAATCACTAGTGAAGAATTTCAAGCTTATAAAAATAATT
TCTTTGCAAATGCCAGTGACAAGAAAACTGTTAGTGCTTTAAATTATCAA
TTTAGAAAAATTAAAAATAGAGAAAGTGCTAGAAGATCAAGAGAAAGAAA
AGCAACACATGTTGATGAATTAGAGGCAAAGATTGCAGAAATTGAAAAAG
AAAGAGATAATTATAAAAAAGAGAATGAAAGATTAAGAATGGAATTGGAT
CAATATAAATTACAAGAAAAACAAAAATCAGCTGGTAGTATCTTTGATTA
TATTTCAATTGGTTCACCAACTACTCAAAACTTTAGTAAAAACTTTGGTA
TCATTCTTTTCCTCTTTTTG----------TGCTTCGCCAGCGCGCATTA
CCCCTCCCTAAGGGGACAAGGCTGGGTCCCGGCCCCCCCTCGGGGTCGGC
CCCGCGCCGGATCCATTGGAATTGGGCCACTTTACCACAAAATAGTGTTG
CCTCTCTTTCTTTTGAAAAAGATAACGCTCTCAAAACAATTGAAAATGCA
AATCTTGATAACCTCAAAACATAATGTCATTTCAAATTTAAATCAACTTC
AACAACAACAACCATCATCTGATGAATTAATGATTGACCAAAAAGAAGAA
AAGAATTGTAATAATAATAATGAAAATAATAATAATAATGACAATAATAA
AAATAGTGATGATGAAAAAGGTAAAGAAATTGAAGAAATTAAAAGAAAAT
CAACAACAACAACCATTTCACCAACTCGTTATGTAAATAATTCAACTATT
AGTTTATTAGTTAATCCAACATCGGTAATTGGTGATATACCAGATGATTT
GATGAAAAATTCAAATGTTACTACTTTTGGTGAAAACTCTTCTTTCAAGT
TTAATTTCTTGATTGACACTCAAAATTTCCCAAATGGTTCTAATGATATT
TCAAAAGCATTCTTTGATAATGAAAATCAACAAATGACTGTCACCTCTGT
TATTATTGCAATTCAAAAATCACCTAAAACTCCTTCTCAGCAACCATCAA
CCAAATAATTTTTTTTTAAAAAAATAATTTTTTTATTTTCTATCAATTTT
TCTATTTTTTTATTTATCTTTTTTTTAAAACAAATAATAATAATAAAAAA
AAAAAAAAAAAAACAAAATTCTTTTTCCAAAAATAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1790
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2020122
End point 2018313
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 9
Link to clone list U11007
List of clone(s) 

est1=AFK160F,1,982
est2=SFH101F,222,582
est3=VFO825F,400,970
est4=SSL649Z,983,1803
est5=AFK160Z,994,1704
est6=VFO825Z,1060,1702
est7=SSL649F,1061,1747
est8=VHI629Z,1116,1637
est9=CHF875Z,1168,1637
Translated Amino Acid sequence 
DTNINTINDNNNNNNNNNNNNNNSVNNNLLSMCQDPTLILQIQQLLLQQQLLQQAQQQSV
PLNIQVPTTTTPINQQHQALLVPQQKQFYGNVSDNSSPETNFSYASPSSPSSTQPQSSPY
EQQPLSPNPTISLSSSISVTATTTTRPNATEKTKESSLKSKSKSNEKDKEREDEEEDDDD
RPKKRKKFDKNVYKGVDLGDELLEITSEEFQAYKNNFFANASDKKTVSALNYQFRKIKNR
ESARRSRERKATHVDELEAKIAEIEKERDNYKKENERLRMELDQYKLQEKQKSAGSIFDY
ISIGSPTTQNFSKNFGIILFLFL---

---CFASAHYPSLRGQGWVPAPPRGRPRAGSIGIGPLYHKIVLPLFLLKKITLSKQLKMQ
ILITSKHNVISNLNQLQQQQPSSDELMIDQKEEKNCNNNNENNNNNDNNKNSDDEKGKEI
EEIKRKSTTTTISPTRYVNNSTISLLVNPTSVIGDIPDDLMKNSNVTTFGENSSFKFNFL
IDTQNFPNGSNDISKAFFDNENQQMTVTSVIIAIQKSPKTPSQQPSTK*fffkkiiflfs
infsiflfifflkqiiiikkkkkkqnsfsknkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
*h*ykyh***qqq***qq***q*lc***ft*yvsrpnfnltnttiiitttivttssttic
tikysstynhntn*sttssfigsttktilw*cl**fitrnqfficksiftkfytttilti
*ttttltksnyifii*ylchcyyyh*tkchrkd*riflkiki*i**kr*rkgr*rrr***
*tkekkei**kcl*gc*fr**tirnh**rissl*k*flckcq*qenc*cfklsi*kn*k*
rkc*kikrkksntc**irgkdcrn*krkr*l*kre*kikngigsi*itrktkisw*yl*l
yfnwftnyskl**klwyhsfplf---

---CFASAHYPSLRGQGWVPAPPRGRPRAGSIGIGPLYHKIVLPLFLLKKITLSKQLKMQ
ILITSKHNVISNLNQLQQQQPSSDELMIDQKEEKNCNNNNENNNNNDNNKNSDDEKGKEI
EEIKRKSTTTTISPTRYVNNSTISLLVNPTSVIGDIPDDLMKNSNVTTFGENSSFKFNFL
IDTQNFPNGSNDISKAFFDNENQQMTVTSVIIAIQKSPKTPSQQPSTK*fffkkiiflfs
infsiflfifflkqiiiikkkkkkqnsfsknkkkkk

Frame B:
DTNINTINDNNNNNNNNNNNNNNSVNNNLLSMCQDPTLILQIQQLLLQQQLLQQAQQQSV
PLNIQVPTTTTPINQQHQALLVPQQKQFYGNVSDNSSPETNFSYASPSSPSSTQPQSSPY
EQQPLSPNPTISLSSSISVTATTTTRPNATEKTKESSLKSKSKSNEKDKEREDEEEDDDD
RPKKRKKFDKNVYKGVDLGDELLEITSEEFQAYKNNFFANASDKKTVSALNYQFRKIKNR
ESARRSRERKATHVDELEAKIAEIEKERDNYKKENERLRMELDQYKLQEKQKSAGSIFDY
ISIGSPTTQNFSKNFGIILFLFL---

---asparitpp*gdkagsrpplgvgpapdplelghfttk*cclsff*kr*rsqnn*kck
s**pqnimsfqi*infnnnnhhlmn**ltkkkkriviiimkiiiimtiikivmmkkvkkl
kklkenqqqqpfhqlvm*iiqllvy*liqhr*lviyqmi**kiqmllllvktllsslis*
ltlkisqmvlmifqkhslimkink*lspllllqfknhlklllsnhqpnnfflkk*ffyfl
siflffylsff*nk****kkkkknkilfpkikkkkk

Frame C:
tli*iplmitttiiittiiititlliiiylvcvktql*sykynnyyynnncynklnnnly
h*ifkylqpqhqlinniklywfhnknnfmvmsliihhqkpifhmqvhlhqvlhnhnphhm
nnnhshqiqlylyhlvslsllllpldqmpqkrlknlp*nqnlnlmkkikkgkmkkkmmmi
dqrkernlikmfirvli*vmny*kslvknfklikiislqmpvtrkllvl*iinleklkie
kvledqekekqhmlmn*rqrlqklkkkeiiikkrmkd*ewnwininykknknqlvvslii
fqlvhqllktlvktlvsffssf---

---lrqralplpkgtrlgpgppsgsaprrihwnwatlpqnsvaslsfekdnalktienan
ldnlkt*chfkfkststtttii**ind*pkrrkel*****k*****q**k****kr*rn*
rn*kkinnnnhftnslck*fny*fis*snignw*ytr*fdekfkcyyfw*klffqv*fld
*hskfpkwf**yfksil***kstndchlcyycnskit*nsfsatinqiiff*knnffify
qffyffiylffktnnnnkkkkkktkfffqk*kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11007-1 (Contig-U11007-1Q)
/CSM_Contig/Contig-U11007-1Q.Seq.d
         (1800 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Conti...   743  0.0
Contig-U14684-1 (Contig-U14684-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U05561-1 (Contig-U05561-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U06034-1 (Contig-U06034-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U14885-1 (Contig-U14885-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U13905-1 (Contig-U13905-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti...    38  0.032

>Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Contig-U11007-1Q.Seq.d
          Length = 1800

 Score =  743 bits (375), Expect = 0.0
 Identities = 419/426 (98%)
 Strand = Plus / Plus

                                                                        
Query: 833  ttaagaatggaattggatcaatataaattacaagaaaaacaaaaatcagctggtagtatc 892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  ttaagaatggaattggatcaatataaattacaagaaaaacaaaaatcagctggtagtatc 892

                                                                        
Query: 893  tttgattatatttcaattggttcaccaactactcaaaactttagtaaaaactttggtatc 952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  tttgattatatttcaattggttcaccaactactcaaaactttagtaaaaactttggtatc 952

                                                                        
Query: 953  attcttttcctctttttgnnnnnnnnnntgcttcgccagcgcgcattacccctccctaag 1012
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  attcttttcctctttttgnnnnnnnnnntgcttcgccagcgcgcattacccctccctaag 1012

                                                                        
Query: 1013 gggacaaggctgggtcccggnnnnnnntcggggtcggccccgcgccggatccattggaat 1072
            ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 1013 gggacaaggctgggtcccggccccccctcggggtcggccccgcgccggatccattggaat 1072

                                                                        
Query: 1073 tgggccactttaccacaaaatagtgttgcctctctttcttttgaaaaagataacgctctc 1132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 tgggccactttaccacaaaatagtgttgcctctctttcttttgaaaaagataacgctctc 1132

                                                                        
Query: 1133 aaaacaattgaaaatgcaaatcttgataacctcaaaacataatgtcatttcaaatttaaa 1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 aaaacaattgaaaatgcaaatcttgataacctcaaaacataatgtcatttcaaatttaaa 1192

                                                                        
Query: 1193 tcaacttcaacaacaacaaccatcatctgatgaattaatgattgaccaaaaagaagaaaa 1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 tcaacttcaacaacaacaaccatcatctgatgaattaatgattgaccaaaaagaagaaaa 1252

                  
Query: 1253 gaattg 1258
            ||||||
Sbjct: 1253 gaattg 1258


 Score =  609 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1351 caacaacaacaaccatttcaccaactcgttatgtaaataattcaactattagtttattag 1410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 caacaacaacaaccatttcaccaactcgttatgtaaataattcaactattagtttattag 1410

                                                                        
Query: 1411 ttaatccaacatcggtaattggtgatataccagatgatttgatgaaaaattcaaatgtta 1470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 ttaatccaacatcggtaattggtgatataccagatgatttgatgaaaaattcaaatgtta 1470

                                                                        
Query: 1471 ctacttttggtgaaaactcttctttcaagtttaatttcttgattgacactcaaaatttcc 1530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 ctacttttggtgaaaactcttctttcaagtttaatttcttgattgacactcaaaatttcc 1530

                                                                        
Query: 1531 caaatggttctaatgatatttcaaaagcattctttgataatgaaaatcaacaaatgactg 1590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 caaatggttctaatgatatttcaaaagcattctttgataatgaaaatcaacaaatgactg 1590

                                                                        
Query: 1591 tcacctctgttattattgcaattcaaaaatcacctaaaactccttctcagcaaccatcaa 1650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 tcacctctgttattattgcaattcaaaaatcacctaaaactccttctcagcaaccatcaa 1650

                   
Query: 1651 ccaaata 1657
            |||||||
Sbjct: 1651 ccaaata 1657


 Score =  543 bits (274), Expect = e-154
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 176 tctgtaccattaaatattcaagtacctacaaccacaacaccaattaatcaacaacatcaa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tctgtaccattaaatattcaagtacctacaaccacaacaccaattaatcaacaacatcaa 235

                                                                       
Query: 236 gctttattggttccacaacaaaaacaattttatggtaatgtctctgataattcatcacca 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gctttattggttccacaacaaaaacaattttatggtaatgtctctgataattcatcacca 295

                                                                       
Query: 296 gaaaccaatttttcatatgcaagtccatcttcaccaagttctacacaaccacaatcctca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaaaccaatttttcatatgcaagtccatcttcaccaagttctacacaaccacaatcctca 355

                                                                       
Query: 356 ccatatgaacaacaaccactctcaccaaatccaactatatctttatcatctagtatctct 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccatatgaacaacaaccactctcaccaaatccaactatatctttatcatctagtatctct 415

                                             
Query: 416 gtcactgctactactaccactagaccaaatgcca 449
           ||||||||||||||||||||||||||||||||||
Sbjct: 416 gtcactgctactactaccactagaccaaatgcca 449


 Score =  404 bits (204), Expect = e-112
 Identities = 204/204 (100%)
 Strand = Plus / Plus

                                                                       
Query: 574 tgtttataagggtgttgatttaggtgatgaactattagaaatcactagtgaagaatttca 633
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgtttataagggtgttgatttaggtgatgaactattagaaatcactagtgaagaatttca 633

                                                                       
Query: 634 agcttataaaaataatttctttgcaaatgccagtgacaagaaaactgttagtgctttaaa 693
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agcttataaaaataatttctttgcaaatgccagtgacaagaaaactgttagtgctttaaa 693

                                                                       
Query: 694 ttatcaatttagaaaaattaaaaatagagaaagtgctagaagatcaagagaaagaaaagc 753
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttatcaatttagaaaaattaaaaatagagaaagtgctagaagatcaagagaaagaaaagc 753

                                   
Query: 754 aacacatgttgatgaattagaggc 777
           ||||||||||||||||||||||||
Sbjct: 754 aacacatgttgatgaattagaggc 777


 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 86  ttacttagtatgtgtcaagacccaactttaatcttacaaatac 128
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ttacttagtatgtgtcaagacccaactttaatcttacaaatac 128


 Score = 36.2 bits (18), Expect = 0.13
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1727 aaaacaaataataataat 1744
            ||||||||||||||||||
Sbjct: 1727 aaaacaaataataataat 1744


 Score = 34.2 bits (17), Expect = 0.51
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1199 tcaacaacaacaaccat 1215
            |||||||||||||||||
Sbjct: 1350 tcaacaacaacaaccat 1366


 Score = 32.2 bits (16), Expect = 2.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1351 caacaacaacaaccat 1366
            ||||||||||||||||
Sbjct: 1200 caacaacaacaaccat 1215


>Contig-U14684-1 (Contig-U14684-1Q) /CSM_Contig/Contig-U14684-1Q.Seq.d
          Length = 1466

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 857 aaattacaagaaaaacaaaaat 878
           ||||||||||||||||||||||
Sbjct: 793 aaattacaagaaaaacaaaaat 814


>Contig-U05561-1 (Contig-U05561-1Q) /CSM_Contig/Contig-U05561-1Q.Seq.d
          Length = 873

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1198 ttcaacaacaacaaccatcat 1218
            |||||||||||||||||||||
Sbjct: 626  ttcaacaacaacaaccatcat 646


 Score = 32.2 bits (16), Expect = 2.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1351 caacaacaacaaccat 1366
            ||||||||||||||||
Sbjct: 628  caacaacaacaaccat 643


 Score = 30.2 bits (15), Expect = 7.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1200 caacaacaacaacca 1214
            |||||||||||||||
Sbjct: 667  caacaacaacaacca 681


 Score = 30.2 bits (15), Expect = 7.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1351 caacaacaacaacca 1365
            |||||||||||||||
Sbjct: 667  caacaacaacaacca 681


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,240
Number of Sequences: 6905
Number of extensions: 51240
Number of successful extensions: 12820
Number of sequences better than 10.0: 694
length of query: 1800
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1784
effective length of database: 5,564,391
effective search space: 9926873544
effective search space used: 9926873544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Contig-U11007-1Q.Seq.d
         (1800 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93725) Dictyostelium discoideum slug cDNA, clone SSL649.        601   0.0    6
(BJ345089) Dictyostelium discoideum cDNA clone:dda21g15, 3' ...   605   0.0    3
(BJ436174) Dictyostelium discoideum cDNA clone:ddv30b08, 3' ...   599   0.0    3
(BJ327735) Dictyostelium discoideum cDNA clone:dda21g15, 5' ...   543   0.0    3
(BJ441951) Dictyostelium discoideum cDNA clone:ddv48i08, 3' ...   252   e-171  4
(BJ379111) Dictyostelium discoideum cDNA clone:ddc33f20, 3' ...   504   e-162  3
(BJ417330) Dictyostelium discoideum cDNA clone:ddv30b08, 5' ...   254   e-158  4
(BJ391076) Dictyostelium discoideum cDNA clone:dds15a01, 5' ...   442   e-119  1
(AU074715) Dictyostelium discoideum slug cDNA, clone SSL649.      182   2e-68  2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    44   0.003  9
(BZ569309) pacs2-164_8339.y2 pacs2-164 Pseudomonas aeruginos...    54   0.011  2
(BZ569481) pacs2-164_8392.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569461) pacs2-164_8387.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569435) pacs2-164_8378.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569423) pacs2-164_8376.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569381) pacs2-164_8364.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569377) pacs2-164_8362.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569373) pacs2-164_8361.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569365) pacs2-164_8359.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569361) pacs2-164_8357.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569352) pacs2-164_8353.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569344) pacs2-164_8350.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569339) pacs2-164_8348.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569337) pacs2-164_8347.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569331) pacs2-164_8345.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569328) pacs2-164_8344.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569288) pacs2-164_8331.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569286) pacs2-164_8330.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569283) pacs2-164_8329.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ569230) pacs2-164_8308.y2 pacs2-164 Pseudomonas aeruginos...    54   0.019  1
(BZ557927) pacs1-60_6777.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557915) pacs1-60_6774.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557895) pacs1-60_6768.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557876) pacs1-60_6760.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557852) pacs1-60_6754.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557827) pacs1-60_6744.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557824) pacs1-60_6743.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557748) pacs1-60_6718.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557735) pacs1-60_6714.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557715) pacs1-60_6706.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557706) pacs1-60_6703.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(BZ557704) pacs1-60_6702.y2 pacs1-60 Pseudomonas aeruginosa ...    54   0.019  1
(EA207690) Sequence 72005 from patent US 7214786.                  36   0.028  3
(BQ240315) TaE05019C05R TaE05 Triticum aestivum cDNA clone T...    36   0.028  3
(BZ569479) pacs2-164_8391.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569459) pacs2-164_8386.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569444) pacs2-164_8382.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569401) pacs2-164_8371.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569349) pacs2-164_8352.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569341) pacs2-164_8349.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569325) pacs2-164_8343.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569318) pacs2-164_8341.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569299) pacs2-164_8335.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569251) pacs2-164_8317.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569243) pacs2-164_8313.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569239) pacs2-164_8312.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569232) pacs2-164_8309.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ569228) pacs2-164_8307.y2 pacs2-164 Pseudomonas aeruginos...    52   0.075  1
(BZ557977) pacs1-60_6792.y2 pacs1-60 Pseudomonas aeruginosa ...    52   0.075  1
(BZ557897) pacs1-60_6769.y2 pacs1-60 Pseudomonas aeruginosa ...    52   0.075  1
(BZ557891) pacs1-60_6767.y2 pacs1-60 Pseudomonas aeruginosa ...    52   0.075  1
(BZ557783) pacs1-60_6730.y2 pacs1-60 Pseudomonas aeruginosa ...    52   0.075  1
(BZ557761) pacs1-60_6722.y2 pacs1-60 Pseudomonas aeruginosa ...    52   0.075  1
(BZ557721) pacs1-60_6708.y2 pacs1-60 Pseudomonas aeruginosa ...    52   0.075  1
(BZ557708) pacs1-60_6704.y2 pacs1-60 Pseudomonas aeruginosa ...    52   0.075  1
(AK082095) Mus musculus 0 day neonate cerebellum cDNA, RIKEN...    46   0.080  2
(BZ569277) pacs2-164_8326.y2 pacs2-164 Pseudomonas aeruginos...    50   0.15   2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    34   0.23   10
(BJ375011) Dictyostelium discoideum cDNA clone:ddc17i01, 3' ...    36   0.24   3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.26   11
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.29   9
(AL445985) Human DNA sequence from clone RP11-45B20 on chrom...    50   0.30   1
(BZ569416) pacs2-164_8375.y2 pacs2-164 Pseudomonas aeruginos...    50   0.30   1
(BZ569396) pacs2-164_8369.y2 pacs2-164 Pseudomonas aeruginos...    50   0.30   1
(BZ569335) pacs2-164_8346.y2 pacs2-164 Pseudomonas aeruginos...    50   0.30   1
(BZ569307) pacs2-164_8338.y2 pacs2-164 Pseudomonas aeruginos...    50   0.30   1
(BZ569281) pacs2-164_8328.y2 pacs2-164 Pseudomonas aeruginos...    50   0.30   1
(BZ569279) pacs2-164_8327.y2 pacs2-164 Pseudomonas aeruginos...    50   0.30   1
(BZ557918) pacs1-60_6775.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(BZ557871) pacs1-60_6759.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(BZ557860) pacs1-60_6757.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(BZ557840) pacs1-60_6749.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(BZ557816) pacs1-60_6741.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(BZ557798) pacs1-60_6736.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(BZ557772) pacs1-60_6727.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(BZ557729) pacs1-60_6711.y2 pacs1-60 Pseudomonas aeruginosa ...    50   0.30   1
(CF410018) CH3#064_B08MR Canine heart normalized cDNA Librar...    50   0.30   1
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    36   0.32   8
(AY484461) Dictyostelium discoideum kinesin family member 6 ...    34   0.36   4
(AC116919) Dictyostelium discoideum chromosome 2 map complem...    32   0.44   6
(U64830) Dictyostelium discoideum AX2 protein tyrosine kinas...    42   0.47   4
(AC027145) Homo sapiens chromosome 2 clone RP11-111A8 map 2,...    42   0.50   5
(AU071970) Dictyostelium discoideum slug cDNA, clone SSC871.       32   0.54   3
(AU071598) Dictyostelium discoideum slug cDNA, clone SSB864.       32   0.54   3
(AF241823) Dictyostelium discoideum prespore protein MF12 ge...    34   0.56   4
(AY831786) Triticum aestivum clone TaE15025G11 low molecular...    38   0.60   2
(DQ121055) Hucho taimen clone ZA-5 microsatellite sequence.        32   0.72   3
(AF153362) Dictyostelium discoideum adenylyl cyclase (acrA) ...    32   0.74   6
(C23822) Dictyostelium discoideum gamete cDNA, clone FCL-AB24.     32   0.74   4
(C93963) Dictyostelium discoideum slug cDNA, clone SSC862.         32   0.76   3

>(C93725) Dictyostelium discoideum slug cDNA, clone SSL649.
          Length = 875

 Score =  601 bits (303), Expect(6) = 0.0
 Identities = 306/307 (99%)
 Strand = Plus / Plus


Query: 1351 caacaacaacaaccatttcaccaactcgttatgtaaataattcaactattagtttattag 1410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425  caacaacaacaaccatttcaccaactcgttatgtaaataattcaactattagtttattag 484


Query: 1411 ttaatccaacatcggtaattggtgatataccagatgatttgatgaaaaattcaaatgtta 1470
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 485  ttaatccaacatcggtaattggtgatataccggatgatttgatgaaaaattcaaatgtta 544


Query: 1471 ctacttttggtgaaaactcttctttcaagtttaatttcttgattgacactcaaaatttcc 1530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  ctacttttggtgaaaactcttctttcaagtttaatttcttgattgacactcaaaatttcc 604


Query: 1531 caaatggttctaatgatatttcaaaagcattctttgataatgaaaatcaacaaatgactg 1590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  caaatggttctaatgatatttcaaaagcattctttgataatgaaaatcaacaaatgactg 664


Query: 1591 tcacctctgttattattgcaattcaaaaatcacctaaaactccttctcagcaaccatcaa 1650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  tcacctctgttattattgcaattcaaaaatcacctaaaactccttctcagcaaccatcaa 724


Query: 1651 ccaaata 1657
            |||||||
Sbjct: 725  ccaaata 731

 Score =  161 bits (81), Expect(6) = 0.0
 Identities = 81/81 (100%)
 Strand = Plus / Plus


Query: 1139 attgaaaatgcaaatcttgataacctcaaaacataatgtcatttcaaatttaaatcaact 1198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214  attgaaaatgcaaatcttgataacctcaaaacataatgtcatttcaaatttaaatcaact 273


Query: 1199 tcaacaacaacaaccatcatc 1219
            |||||||||||||||||||||
Sbjct: 274  tcaacaacaacaaccatcatc 294

 Score =  103 bits (52), Expect(6) = 0.0
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 981  tgcttcgccagcgcgcattacccctccctaaggggacaaggctgggtcccgg 1032
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   tgcttcgccagcgcgcattacccctccctaaggggacaaggctgggtcccgg 111

 Score =  101 bits (51), Expect(6) = 0.0
 Identities = 57/59 (96%)
 Strand = Plus / Plus


Query: 1040 tcggggtcggccccgcgccggatccattggaattgggccactttaccacaaaatagtgt 1098
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 119  tcggggtcggccccgcgccggatccattggaattgggccactttcccacaaaatggtgt 177

 Score = 50.1 bits (25), Expect(6) = 0.0
 Identities = 25/25 (100%)
 Strand = Plus / Plus


Query: 1099 tgcctctctttcttttgaaaaagat 1123
            |||||||||||||||||||||||||
Sbjct: 177  tgcctctctttcttttgaaaaagat 201

 Score = 36.2 bits (18), Expect(6) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus


Query: 1727 aaaacaaataataataat 1744
            ||||||||||||||||||
Sbjct: 801  aaaacaaataataataat 818

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,478,002,944
Number of extensions: 108685489
Number of successful extensions: 11369365
Number of sequences better than 10.0: 220
Length of query: 1800
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1776
Effective length of database: 97,308,875,965
Effective search space: 172820563713840
Effective search space used: 172820563713840
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Contig-U11007-1Q.Seq.d
         (1800 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533423_1(CR533423|pid:none) Paramecium tetraurelia, complete g...    36   4.0

>CR533423_1(CR533423|pid:none) Paramecium tetraurelia, complete gene.
          Length = 1598

 Score = 36.2 bits (82), Expect = 4.0
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +3

Query: 1383 VNNSTISLLVNPTSVIGDIPDDLMKNSNVTTFGENSSFKFNFLIDTQNFPNGSNDISKAF 1562
            +N++T  + +NP  +   +  ++MK   +  F +N      +L+D Q   N + +I+K F
Sbjct: 538  LNDNTTVMYINPIEIQRQLKQEIMKGCQL--FKKNPDKGIKYLLDAQIIQNDAKEIAKFF 595

Query: 1563 FDNENQ 1580
             +N+ Q
Sbjct: 596  RENQQQ 601

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,648,711,721
Number of extensions: 26744688
Number of successful extensions: 74273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74194
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 466
Effective length of database: 611,592,589
Effective search space: 285002146474
Effective search space used: 285002146474
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.73  alm: 0.32  top: 0.63  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.33  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U11007-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0