Contig-U10996-1
Contig ID Contig-U10996-1
Contig update 2002.12.18
Contig sequence
>Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Contig-U10996-1Q.Seq.d
TGGCCTACTGGTAAAAAAAATTCTAATTTTATTAAAACCCTTTTATTTGT
TTAATAAACATAATTTAAATAAACTTCAATAATGTCAGATAATGAACAAG
AAGAATCATCACAAGTAGTATTAAAGGAGGATAAAACCTTTGTTACATTT
TTTCAAAGTTTAGTATCCTCTAATGAAGATACAGACACAATTAGATTATT
TGATAGAAAAGGATATTACTCAATTCATGGTGAAGATGCAGTATTTGTAG
CAATGATGCATTTTAAATCAAAGAAATCATTAAAATATTGGAGTATTAGT
GATCCAAATCCAAAAAAGAAAATTAAAATTGATAATGATGGTTCATTAAC
AACAACTGCATCATCATCCCAACAACAACAACAAGAATTAGGATTAGCGG
TATTAACAATTAGACAAGGTTATGAATTTGAAAATATAGTTAAAGAATTA
TTAGATGAAAAGAAAAAGATTGAAATTTGGTCAATGAAACCAAATAGTAA
ACAACAATGGGAACTAATTAAAAAAGGCTCACCAGGTAATACACAAATGT
TTGAAGATGTTTTATTGAATGGTAATTGTGAAGGATCAGTTATGATGGCA
TTAAAAGTCACAAGAGAGAAAGGTTCAATCGTATTTGGTATATCATTTGG
TGATGCTACTTTCAAGACAATTGGTGTTTCACAATTTATGGATAATGATA
ATCTATCGAATCTTTCAAGTTTTATAATGCAAATGAGTGTAAAGGAATGC
TTGTTATGTTGTGATCAAAAGAATTATGATTATCAAAAAGTTAAAGAGAA
ATTATCAGATGCAGGTATACCATTCACAGAATTACCAAAATCAGATTTCT
CCTCAAAGAATGCCGAACAAGATTTAACTCGTTTATTGGGTTCCGTTAAA
AATAATTTACCAGATATCGAACAAGAGCATGCCATTCAGTCTGCTAGTTG
CTTAATTAAACATTTGGATTTACTTTCAAATCCAAATTATTTTGGTAAAT
TCAAATTGGAAAAATATGATTTAGATAGATATATGAAATTAGATTCTTCA
TCATTTAAAGGTTTACATATTATTGATTTAAAAGATTCTTCAGTTAGTGC
AGCAGCAGGTGGTGGTGGTGCAGGTGGAGCATCATCTAGTTCAAATAAAG
ATCAAAGTTTATATAATTTATTAAATCAATGTAATACACCAATGGGATCA
AGATTATTATTACAATGGGTAAAGCAACCATTATTAAATGCAGAGGAAAT
CGAAGCAAGATTAAATTTTGTAGAGGCATTTTATAATGATTTGGAGTTAC
GTCAATCTTTAAGATCAAATGATTTGAAGAAAATTGGTGATTTAGATAGA
TTATCAAAGAAATTGCATGGTCAAAAGGCTACATTGGAGGATTGTGTCAA
TTTGTATGGTATTGTCACTAGATTACCAGTGGTATTGCAATCATTGAATA
ATCATAGTAGTATACATCAAGAGTTGATTAAAGTTAATTTCATAGAGAGT
TTAGAGTCTATTATATCAGATTTTGCTAAATTCTGTGCAATGGTTGAAAA
AACCATCGATTTAGATTTGGCCAATGACAAACATGAATATGTTATTAGAT
CAAGTTTCGATGAGACATTACGTGGTATTCAATTGAAGAAAGATCAAATT
TCAAATAAAATCGAACGATTTAGAGTTGACATTGCTGATGATTTGAATTT
AGATGAAGCAAAAGTTAAATTACATTATAGTGAAAAGGATATGTTTTTAT
TGAGAATCTCAAGAAAGGATGAGGTTGCAATTAGAGATAAAAAGAAATAC
ATTGTTCATGCAACCGCTAAAGATGGTGTAAGATTTGCCACTAGAGAAAT
CGATACTCTAAATGAAGCCTATAAGAAATGGTCA----------TTTGAT
TGAAGATTTATCATCATTAATTGCAACATTGGATGTATTTGTAACTTTAA
GTCATGTATCTTCAATTGCACCAATCCCATTCATTAGACCAGAGATTATA
CCATTAGGTAGTGATGAAAATGGTGCTGGGCACTGTTATTATTGGTGGTC
GTCATCCATGTGTAGAAATTCAAGATAATGTTAATTTCATTGCAAATGAT
ATTGATTTAACTCGTGGTCAATCCCAATTTCAAATTATAACAGGACCAAA
TATGGGTGGTAAATCAACATTTATTCGTCAAGTTGGATTAATAGTATTAA
TGGCACAAATTGGTTGTTTTGTACCAGCACAAAAAGCAACAATTGCAGTT
GTCGATTGTATTTTATCAAGAGTTGGTGCAGGTGATAGTCAATTACGTGG
TGTTTCAACATTTATGGCAGAAATGTTAGAGACATCTTACATTTTAAAGG
TTGCAACTAAAAATTCTTTAATCATTATTGATGAACTTGGTAGAGGTACT
TCAACATATGATGGTTTTGGTTTAGCTTGGGGTATTGCAGAGTATATTTG
TAATCAAATTGGTGGTTTCTGTCTATTTGCAACTCATTTCCATGAATTGA
CAATTCTATCAGATTTACTTCCAATGGTTAAAAATTTACATGTTTCAGCT
TCAACCCAAAACAATACTTTTACTTTACTCTATAAAGTTGAACAAGGTCC
TTGTGATCAAAGTTTTGGTATTCATGTTGCAATTTTAGCAAATTTCCCTT
CACAAGTTATTGAAAATGCAAAACAAAAAGCAAAAGAATTGGAATCTTTT
GAATCAAATACACTTAAACAAAATCATAATAAATTTTTGGAAGAATTTAA
AGAAATTAATTTCAATTCAAATGATGTAGAAAAATCATTAAGTTTAGTTA
ATAGTTTATTAAATAAATATTCAATAGATATCAATTAATAAAATATGAAA
TTTCTACTAAAAATATCCCCCTTCCCCAATTTTTTTTATTTTTTTTGTTA
TTTTTCATATGAAATTTAAAAATATCTATTTTATTGGGTGAATAATAAAG
CATTTCATAATTATTAATAGTTTTAATACTATTTATAATGTATTGTTAAG
GCAAAAATAAAAAAAAAAGNAAAAAAA

Gap gap included
Contig length 3017
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5488454
End point 5485454
Strand (PLUS/MINUS) MINUS
Number of clones 41
Number of EST 76
Link to clone list U10996
List of clone(s)

est1=AHQ747F,-2,612
est2=VHB348F,1,605
est3=AHL270F,8,616
est4=AHB392F,9,620
est5=AHC409F,9,584
est6=AHK412F,9,582
est7=SHD665F,13,573
est8=SHF543F,13,613
est9=AHE763F,15,618
est10=AHA696F,16,620
est11=AHC623F,16,583
est12=AHF711F,16,615
est13=SHH735F,16,581
est14=AHQ336F,17,616
est15=AHB251F,18,579
est16=VHJ343F,18,614
est17=AHN893F,24,611
est18=SHJ505F,27,608
est19=AHF319F,29,669
est20=AHI606F,31,616
est21=AHB369F,34,620
est22=CHG289F,43,513
est23=AHJ673F,49,616
est24=AHL244F,49,668
est25=CHQ636F,49,667
est26=CHQ653F,49,664
est27=AHC758F,53,616
est28=AHD346F,56,720
est29=AHI795F,56,669
est30=CHR180F,56,617
est31=SHA287F,61,666
est32=AHQ433F,119,771
est33=SHK763F,210,799
est34=AHH746F,236,391
est35=AHA546F,521,1174
est36=AFJ753F,725,1346
est37=VHH217F,1257,1884
est38=AHL244Z,1885,2651
est39=CHI416Z,1965,2368
est40=AHL270Z,2041,2840
est41=CHG289Z,2047,2853
est42=CHQ653Z,2048,2835
est43=CHR180Z,2048,2835
est44=AHD346Z,2051,2840
est45=AHC623Z,2053,2840
est46=AHI795Z,2053,2789
est47=VHB348Z,2054,2853
est48=VHJ343Z,2056,2816
est49=SHA287Z,2061,2835
est50=AHF319Z,2062,2840
est51=AHF711Z,2062,2840
est52=AHE763Z,2064,2840
est53=AHB251Z,2105,2840
est54=AHA696Z,2108,2840
est55=AHC409Z,2109,2846
est56=AHH746Z,2109,2857
est57=SHJ505Z,2112,2852
est58=AHB369Z,2113,2840
est59=SHD665Z,2113,2853
est60=AHK412Z,2115,2840
est61=AHA546Z,2116,2841
est62=AHJ673Z,2117,2830
est63=AHN893Z,2117,2857
est64=SHD351Z,2118,2853
est65=AHQ433Z,2128,2840
est66=SHK866Z,2202,2968
est67=AHQ336Z,2203,2824
est68=AFJ753Z,2211,2839
est69=AHC758Z,2212,2840
est70=AHI606Z,2226,2927
est71=AHB392Z,2228,2840
est72=AHP192Z,2257,2840
est73=CHQ636Z,2328,2986
est74=SHF543Z,2464,3018
est75=AHQ747Z,2469,3041
est76=VHH217Z,2515,2960
Translated Amino Acid sequence
wptgkknsnfiktllfv**t*fk*TSIMSDNEQEESSQVVLKEDKTFVTFFQSLVSSNED
TDTIRLFDRKGYYSIHGEDAVFVAMMHFKSKKSLKYWSISDPNPKKKIKIDNDGSLTTTA
SSSQQQQQELGLAVLTIRQGYEFENIVKELLDEKKKIEIWSMKPNSKQQWELIKKGSPGN
TQMFEDVLLNGNCEGSVMMALKVTREKGSIVFGISFGDATFKTIGVSQFMDNDNLSNLSS
FIMQMSVKECLLCCDQKNYDYQKVKEKLSDAGIPFTELPKSDFSSKNAEQDLTRLLGSVK
NNLPDIEQEHAIQSASCLIKHLDLLSNPNYFGKFKLEKYDLDRYMKLDSSSFKGLHIIDL
KDSSVSAAAGGGGAGGASSSSNKDQSLYNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEAR
LNFVEAFYNDLELRQSLRSNDLKKIGDLDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQ
SLNNHSSIHQELIKVNFIESLESIISDFAKFCAMVEKTIDLDLANDKHEYVIRSSFDETL
RGIQLKKDQISNKIERFRVDIADDLNLDEAKVKLHYSEKDMFLLRISRKDEVAIRDKKKY
IVHATAKDGVRFATREIDTLNEAYKKWS---

---LIEDLSSLIATLDVFVTLSHVSSIAPIPFIRPEIIPLGSDENGAGHCYYWWSSSMCR
NSR*c*fhck*y*fnswsipisnynrtkygw*iniyssswinsingtnwlfctstksnnc
scrlyfikswcr**sitwcfniygrnvrdilhfkgcn*kffnhy**tw*ryfni*wfwfs
lgycrvyl*snwwflsicnsfp*idnsirftsng*kftcfsfnpkqyfyftl*s*trsl*
skfwysccnfskfpftsy*kcktkskrigif*ikyt*tks**ifgri*rn*fqfk*crki
ikfs**fik*ifnryqlikyeistkniplpqfflffllffi*nlkisillge**sis*ll
ivlilfimyc*gknkkkxkk


Translated Amino Acid sequence (All Frames)
Frame A:
wptgkknsnfiktllfv**t*fk*TSIMSDNEQEESSQVVLKEDKTFVTFFQSLVSSNED
TDTIRLFDRKGYYSIHGEDAVFVAMMHFKSKKSLKYWSISDPNPKKKIKIDNDGSLTTTA
SSSQQQQQELGLAVLTIRQGYEFENIVKELLDEKKKIEIWSMKPNSKQQWELIKKGSPGN
TQMFEDVLLNGNCEGSVMMALKVTREKGSIVFGISFGDATFKTIGVSQFMDNDNLSNLSS
FIMQMSVKECLLCCDQKNYDYQKVKEKLSDAGIPFTELPKSDFSSKNAEQDLTRLLGSVK
NNLPDIEQEHAIQSASCLIKHLDLLSNPNYFGKFKLEKYDLDRYMKLDSSSFKGLHIIDL
KDSSVSAAAGGGGAGGASSSSNKDQSLYNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEAR
LNFVEAFYNDLELRQSLRSNDLKKIGDLDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQ
SLNNHSSIHQELIKVNFIESLESIISDFAKFCAMVEKTIDLDLANDKHEYVIRSSFDETL
RGIQLKKDQISNKIERFRVDIADDLNLDEAKVKLHYSEKDMFLLRISRKDEVAIRDKKKY
IVHATAKDGVRFATREIDTLNEAYKKWS---

---fd*rfiiincnigcicnfkscifnctnpih*trdytir***kwcwallllvvvihv*
kfkimlislqmili*lvvnpnfkl*qdqiwvvnqhlfvkld**y*whklvvlyqhkkqql
qlsivfyqelvqvivnyvvfqhlwqkc*rhltf*rlqlkil*sllmnlvevlqhmmvlv*
lgvlqsifviklvvsvylqlismn*qfyqiyfqwlkiymfqlqpktilllysiklnkvlv
ikvlvfmlqf*qislhkllkmqnkkqknwnllnqihlnkiiinfwknlkklisiqmm*kn
h*v*livy*iniq*isinki*nfy*kyppspiffiffvifhmkfkniyfig*iikhfiii
nsfntiynvllrqk*kkkxk

Frame B:
gllvkkilillkpfylfnkhnlnklq*cqimnkknhhk*y*rrikpllhffkv*yplmki
qtqldyliekditqfmvkmqyl*q*cilnqrnh*nigvlviqiqkrklklimmvh*qqlh
hhpnnnnkn*d*ry*qldkvmnlki*lkny*mkrkrlkfgq*nqivnnngn*lkkahqvi
hkclkmfy*mvivkdql*wh*ksqerkvqsylvyhlvmllsrqlvfhnlwimiiyrifqv
l*ck*v*rnacyvvikrimiikklkrnyqmqvyhsqnyqnqispqrmpnki*lvywvplk
iiyqisnksmpfsllva*lniwiyfqiqiilvnsnwknmi*idi*n*ilhhlkvyilli*
kilqlvqqqvvvvqvehhlvqikikvyiiy*invihqwdqdyyyng*snhy*mqrkskqd
*il*rhfimiwsyvnl*dqmi*rklvi*idyqrncmvkrlhwrivsicmvlsldyqwycn
h*iiivvyiks*lklis*rv*sllyqillnsvqwlkkpsi*iwpmtnmnmlldqvsmrhy
vvfn*rkikfqiksndleltllmi*i*mkqklnyiivkricfy*esqermrlqleikrnt
lfmqplkmv*dlpleksil*mkpirng---

---LIEDLSSLIATLDVFVTLSHVSSIAPIPFIRPEIIPLGSDENGAGHCYYWWSSSMCR
NSR*c*fhck*y*fnswsipisnynrtkygw*iniyssswinsingtnwlfctstksnnc
scrlyfikswcr**sitwcfniygrnvrdilhfkgcn*kffnhy**tw*ryfni*wfwfs
lgycrvyl*snwwflsicnsfp*idnsirftsng*kftcfsfnpkqyfyftl*s*trsl*
skfwysccnfskfpftsy*kcktkskrigif*ikyt*tks**ifgri*rn*fqfk*crki
ikfs**fik*ifnryqlikyeistkniplpqfflffllffi*nlkisillge**sis*ll
ivlilfimyc*gknkkkxkk

Frame C:
ayw*kkf*fy*npficlinii*infnnvr**trriitssikgg*nlcyifskfsil**ry
rhn*ii**krillnsw*rcsicsndaf*ikeiikiley**skskken*n***wfinnnci
iipttttririsginn*trl*i*kys*riir*kekd*nlvnetk**ttmgtn*krltr*y
tnv*rcfiew*l*risydgikshkrerfnriwyiiw*cyfqdnwcftiyg***siesfkf
ynaneckgmlvml*skel*lsks*reiircrytihritkirfllkecrtrfnsfigfr*k
*ftryrtrachsvc*lln*tfgftfksklfw*iqigki*fr*iyeirffii*rftyy*fk
rffs*cssrwwwcrwsii*fk*rskfi*fiksm*ytngikiiitmgkatiikcrgnrski
kfcrgil**fgvtsifkik*feenw*fr*iikeiawskgyigglcqfvwych*itsgiai
ie*s**ytsrvd*s*fhrefrvyyirfc*ilcng*knhrfrfgq*qt*icy*ikfr*dit
wysieersnfk*nrti*s*hc**fefr*sks*itl**kgyvfienlkkg*gcn*r*keih
cscnr*rwckich*rnrysk*sl*emv---

---*lkiyhh*lqhwmyl*l*vmylqlhqshsldqrlyh*vvmkmvlgtviiggrhpcve
iqdnvnfiandidltrgqsqfqiitgpnmggkstfirqvglivlmaqigcfvpaqkatia
vvdcilsrvgagdsqlrgvstfmaemletsyilkvatknsliiidelgrgtstydgfgla
wgiaeyicnqiggfclfathfheltilsdllpmvknlhvsastqnntftllykveqgpcd
qsfgihvailanfpsqvienakqkakelesfesntlkqnhnkfleefkeinfnsndveks
lslvnsllnkysidin**nmkfllkispfpnffyffcyfsyei*kylfywvnnkafhny*
*f*yyl*civkakikkkxkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10996-1 (Contig-U10996-1Q)
/CSM_Contig/Contig-U10996-1Q.Seq.d
(3027 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Conti... 5608 0.0
Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti... 48 6e-05
Contig-U09043-1 (Contig-U09043-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U13432-1 (Contig-U13432-1Q) /CSM_Contig/Conti... 44 9e-04
Contig-U10752-1 (Contig-U10752-1Q) /CSM_Contig/Conti... 44 9e-04
Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Conti... 44 9e-04
Contig-U11290-1 (Contig-U11290-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U08552-1 (Contig-U08552-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U10914-1 (Contig-U10914-1Q) /CSM_Contig/Conti... 40 0.014
Contig-U05425-1 (Contig-U05425-1Q) /CSM_Contig/Conti... 40 0.014

>Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Contig-U10996-1Q.Seq.d
Length = 3027

Score = 5608 bits (2829), Expect = 0.0
Identities = 2859/2859 (100%)
Strand = Plus / Plus


Query: 21 ttctaattttattaaaacccttttatttgtttaataaacataatttaaataaacttcaat 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 ttctaattttattaaaacccttttatttgtttaataaacataatttaaataaacttcaat 80


Query: 81 aatgtcagataatgaacaagaagaatcatcacaagtagtattaaaggaggataaaacctt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aatgtcagataatgaacaagaagaatcatcacaagtagtattaaaggaggataaaacctt 140


Query: 141 tgttacattttttcaaagtttagtatcctctaatgaagatacagacacaattagattatt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgttacattttttcaaagtttagtatcctctaatgaagatacagacacaattagattatt 200


Query: 201 tgatagaaaaggatattactcaattcatggtgaagatgcagtatttgtagcaatgatgca 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatagaaaaggatattactcaattcatggtgaagatgcagtatttgtagcaatgatgca 260


Query: 261 ttttaaatcaaagaaatcattaaaatattggagtattagtgatccaaatccaaaaaagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaatcaaagaaatcattaaaatattggagtattagtgatccaaatccaaaaaagaa 320


Query: 321 aattaaaattgataatgatggttcattaacaacaactgcatcatcatcccaacaacaaca 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaaattgataatgatggttcattaacaacaactgcatcatcatcccaacaacaaca 380


Query: 381 acaagaattaggattagcggtattaacaattagacaaggttatgaatttgaaaatatagt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagaattaggattagcggtattaacaattagacaaggttatgaatttgaaaatatagt 440


Query: 441 taaagaattattagatgaaaagaaaaagattgaaatttggtcaatgaaaccaaatagtaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagaattattagatgaaaagaaaaagattgaaatttggtcaatgaaaccaaatagtaa 500


Query: 501 acaacaatgggaactaattaaaaaaggctcaccaggtaatacacaaatgtttgaagatgt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaacaatgggaactaattaaaaaaggctcaccaggtaatacacaaatgtttgaagatgt 560


Query: 561 tttattgaatggtaattgtgaaggatcagttatgatggcattaaaagtcacaagagagaa 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttattgaatggtaattgtgaaggatcagttatgatggcattaaaagtcacaagagagaa 620


Query: 621 aggttcaatcgtatttggtatatcatttggtgatgctactttcaagacaattggtgtttc 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggttcaatcgtatttggtatatcatttggtgatgctactttcaagacaattggtgtttc 680


Query: 681 acaatttatggataatgataatctatcgaatctttcaagttttataatgcaaatgagtgt 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaatttatggataatgataatctatcgaatctttcaagttttataatgcaaatgagtgt 740


Query: 741 aaaggaatgcttgttatgttgtgatcaaaagaattatgattatcaaaaagttaaagagaa 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaggaatgcttgttatgttgtgatcaaaagaattatgattatcaaaaagttaaagagaa 800


Query: 801 attatcagatgcaggtataccattcacagaattaccaaaatcagatttctcctcaaagaa 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attatcagatgcaggtataccattcacagaattaccaaaatcagatttctcctcaaagaa 860


Query: 861 tgccgaacaagatttaactcgtttattgggttccgttaaaaataatttaccagatatcga 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgccgaacaagatttaactcgtttattgggttccgttaaaaataatttaccagatatcga 920


Query: 921 acaagagcatgccattcagtctgctagttgcttaattaaacatttggatttactttcaaa 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 acaagagcatgccattcagtctgctagttgcttaattaaacatttggatttactttcaaa 980


Query: 981 tccaaattattttggtaaattcaaattggaaaaatatgatttagatagatatatgaaatt 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tccaaattattttggtaaattcaaattggaaaaatatgatttagatagatatatgaaatt 1040


Query: 1041 agattcttcatcatttaaaggtttacatattattgatttaaaagattcttcagttagtgc 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 agattcttcatcatttaaaggtttacatattattgatttaaaagattcttcagttagtgc 1100


Query: 1101 agcagcaggtggtggtggtgcaggtggagcatcatctagttcaaataaagatcaaagttt 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 agcagcaggtggtggtggtgcaggtggagcatcatctagttcaaataaagatcaaagttt 1160


Query: 1161 atataatttattaaatcaatgtaatacaccaatgggatcaagattattattacaatgggt 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 atataatttattaaatcaatgtaatacaccaatgggatcaagattattattacaatgggt 1220


Query: 1221 aaagcaaccattattaaatgcagaggaaatcgaagcaagattaaattttgtagaggcatt 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 aaagcaaccattattaaatgcagaggaaatcgaagcaagattaaattttgtagaggcatt 1280


Query: 1281 ttataatgatttggagttacgtcaatctttaagatcaaatgatttgaagaaaattggtga 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 ttataatgatttggagttacgtcaatctttaagatcaaatgatttgaagaaaattggtga 1340


Query: 1341 tttagatagattatcaaagaaattgcatggtcaaaaggctacattggaggattgtgtcaa 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 tttagatagattatcaaagaaattgcatggtcaaaaggctacattggaggattgtgtcaa 1400


Query: 1401 tttgtatggtattgtcactagattaccagtggtattgcaatcattgaataatcatagtag 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 tttgtatggtattgtcactagattaccagtggtattgcaatcattgaataatcatagtag 1460


Query: 1461 tatacatcaagagttgattaaagttaatttcatagagagtttagagtctattatatcaga 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 tatacatcaagagttgattaaagttaatttcatagagagtttagagtctattatatcaga 1520


Query: 1521 ttttgctaaattctgtgcaatggttgaaaaaaccatcgatttagatttggccaatgacaa 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 ttttgctaaattctgtgcaatggttgaaaaaaccatcgatttagatttggccaatgacaa 1580


Query: 1581 acatgaatatgttattagatcaagtttcgatgagacattacgtggtattcaattgaagaa 1640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 acatgaatatgttattagatcaagtttcgatgagacattacgtggtattcaattgaagaa 1640


Query: 1641 agatcaaatttcaaataaaatcgaacgatttagagttgacattgctgatgatttgaattt 1700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 agatcaaatttcaaataaaatcgaacgatttagagttgacattgctgatgatttgaattt 1700


Query: 1701 agatgaagcaaaagttaaattacattatagtgaaaaggatatgtttttattgagaatctc 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 agatgaagcaaaagttaaattacattatagtgaaaaggatatgtttttattgagaatctc 1760


Query: 1761 aagaaaggatgaggttgcaattagagataaaaagaaatacattgttcatgcaaccgctaa 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 aagaaaggatgaggttgcaattagagataaaaagaaatacattgttcatgcaaccgctaa 1820


Query: 1821 agatggtgtaagatttgccactagagaaatcgatactctaaatgaagcctataagaaatg 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1821 agatggtgtaagatttgccactagagaaatcgatactctaaatgaagcctataagaaatg 1880


Query: 1881 gtcannnnnnnnnntttgattgaagatttatcatcattaattgcaacattggatgtattt 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1881 gtcannnnnnnnnntttgattgaagatttatcatcattaattgcaacattggatgtattt 1940


Query: 1941 gtaactttaagtcatgtatcttcaattgcaccaatcccattcattagaccagagattata 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941 gtaactttaagtcatgtatcttcaattgcaccaatcccattcattagaccagagattata 2000


Query: 2001 ccattaggtagtgatgaaaatggtgctgggcactgttattattggtggtcgtcatccatg 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2001 ccattaggtagtgatgaaaatggtgctgggcactgttattattggtggtcgtcatccatg 2060


Query: 2061 tgtagaaattcaagataatgttaatttcattgcaaatgatattgatttaactcgtggtca 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2061 tgtagaaattcaagataatgttaatttcattgcaaatgatattgatttaactcgtggtca 2120


Query: 2121 atcccaatttcaaattataacaggaccaaatatgggtggtaaatcaacatttattcgtca 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 atcccaatttcaaattataacaggaccaaatatgggtggtaaatcaacatttattcgtca 2180


Query: 2181 agttggattaatagtattaatggcacaaattggttgttttgtaccagcacaaaaagcaac 2240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2181 agttggattaatagtattaatggcacaaattggttgttttgtaccagcacaaaaagcaac 2240


Query: 2241 aattgcagttgtcgattgtattttatcaagagttggtgcaggtgatagtcaattacgtgg 2300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2241 aattgcagttgtcgattgtattttatcaagagttggtgcaggtgatagtcaattacgtgg 2300


Query: 2301 tgtttcaacatttatggcagaaatgttagagacatcttacattttaaaggttgcaactaa 2360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2301 tgtttcaacatttatggcagaaatgttagagacatcttacattttaaaggttgcaactaa 2360


Query: 2361 aaattctttaatcattattgatgaacttggtagaggtacttcaacatatgatggttttgg 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2361 aaattctttaatcattattgatgaacttggtagaggtacttcaacatatgatggttttgg 2420


Query: 2421 tttagcttggggtattgcagagtatatttgtaatcaaattggtggtttctgtctatttgc 2480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2421 tttagcttggggtattgcagagtatatttgtaatcaaattggtggtttctgtctatttgc 2480


Query: 2481 aactcatttccatgaattgacaattctatcagatttacttccaatggttaaaaatttaca 2540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2481 aactcatttccatgaattgacaattctatcagatttacttccaatggttaaaaatttaca 2540


Query: 2541 tgtttcagcttcaacccaaaacaatacttttactttactctataaagttgaacaaggtcc 2600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2541 tgtttcagcttcaacccaaaacaatacttttactttactctataaagttgaacaaggtcc 2600


Query: 2601 ttgtgatcaaagttttggtattcatgttgcaattttagcaaatttcccttcacaagttat 2660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2601 ttgtgatcaaagttttggtattcatgttgcaattttagcaaatttcccttcacaagttat 2660


Query: 2661 tgaaaatgcaaaacaaaaagcaaaagaattggaatcttttgaatcaaatacacttaaaca 2720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2661 tgaaaatgcaaaacaaaaagcaaaagaattggaatcttttgaatcaaatacacttaaaca 2720


Query: 2721 aaatcataataaatttttggaagaatttaaagaaattaatttcaattcaaatgatgtaga 2780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2721 aaatcataataaatttttggaagaatttaaagaaattaatttcaattcaaatgatgtaga 2780


Query: 2781 aaaatcattaagtttagttaatagtttattaaataaatattcaatagatatcaattaata 2840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2781 aaaatcattaagtttagttaatagtttattaaataaatattcaatagatatcaattaata 2840


Query: 2841 aaatatgaaatttctactaaaaatatcccccttccccaa 2879
|||||||||||||||||||||||||||||||||||||||
Sbjct: 2841 aaatatgaaatttctactaaaaatatcccccttccccaa 2879


Score = 210 bits (106), Expect = 7e-54
Identities = 106/106 (100%)
Strand = Plus / Plus


Query: 2897 gttatttttcatatgaaatttaaaaatatctattttattgggtgaataataaagcatttc 2956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 gttatttttcatatgaaatttaaaaatatctattttattgggtgaataataaagcatttc 2956


Query: 2957 ataattattaatagttttaatactatttataatgtattgttaaggc 3002
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 ataattattaatagttttaatactatttataatgtattgttaaggc 3002


>Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Contig-U12480-1Q.Seq.d
Length = 1160

Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 359 catcatcatcccaacaacaacaacaaga 386
|||||||||| |||||||||||||||||
Sbjct: 1077 catcatcatcacaacaacaacaacaaga 1104


>Contig-U09043-1 (Contig-U09043-1Q) /CSM_Contig/Contig-U09043-1Q.Seq.d
Length = 1341

Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 370 caacaacaacaacaagaattaggatta 396
||||||||||||||||| |||||||||
Sbjct: 373 caacaacaacaacaagatttaggatta 399


Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 369 ccaacaacaacaacaa 384
||||||||||||||||
Sbjct: 342 ccaacaacaacaacaa 357


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,865
Number of Sequences: 6905
Number of extensions: 66865
Number of successful extensions: 11936
Number of sequences better than 10.0: 502
length of query: 3027
length of database: 5,674,871
effective HSP length: 17
effective length of query: 3010
effective length of database: 5,557,486
effective search space: 16728032860
effective search space used: 16728032860
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Contig-U10996-1Q.Seq.d
(3027 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116960) Dictyostelium discoideum chromosome 2 map complem... 3085 0.0 1
(BJ354445) Dictyostelium discoideum cDNA clone:dda53k18, 3' ... 1566 0.0 1
(BJ379396) Dictyostelium discoideum cDNA clone:ddc34a24, 3' ... 1554 0.0 2
(BJ437185) Dictyostelium discoideum cDNA clone:ddv33p11, 3' ... 1550 0.0 2
(BJ385631) Dictyostelium discoideum cDNA clone:ddc55i14, 3' ... 1540 0.0 1
(BJ351104) Dictyostelium discoideum cDNA clone:dda42f03, 3' ... 1534 0.0 1
(BJ350797) Dictyostelium discoideum cDNA clone:dda41f05, 3' ... 1534 0.0 1
(BJ350681) Dictyostelium discoideum cDNA clone:dda40n15, 3' ... 1522 0.0 1
(BJ403373) Dictyostelium discoideum cDNA clone:dds24m22, 3' ... 1509 0.0 1
(BJ354347) Dictyostelium discoideum cDNA clone:dda53g12, 3' ... 1489 0.0 1
(BJ442254) Dictyostelium discoideum cDNA clone:ddv49f11, 3' ... 1453 0.0 1
(BJ348535) Dictyostelium discoideum cDNA clone:dda33e14, 3' ... 1451 0.0 1
(BJ348350) Dictyostelium discoideum cDNA clone:dda32o24, 3' ... 1445 0.0 1
(BJ348985) Dictyostelium discoideum cDNA clone:dda35b04, 3' ... 1443 0.0 1
(BJ407610) Dictyostelium discoideum cDNA clone:dds43i01, 3' ... 1435 0.0 1
(BJ405379) Dictyostelium discoideum cDNA clone:dds31a18, 3' ... 1433 0.0 2
(BJ348167) Dictyostelium discoideum cDNA clone:dda32k11, 3' ... 1431 0.0 1
(BJ355988) Dictyostelium discoideum cDNA clone:dda58j24, 3' ... 1427 0.0 2
(BJ348562) Dictyostelium discoideum cDNA clone:dda33j17, 3' ... 1427 0.0 1
(BJ405083) Dictyostelium discoideum cDNA clone:dds30f13, 3' ... 1423 0.0 2
(BJ353683) Dictyostelium discoideum cDNA clone:dda51h04, 3' ... 1423 0.0 1
(BJ386033) Dictyostelium discoideum cDNA clone:ddc56o19, 3' ... 1376 0.0 2
(BJ352331) Dictyostelium discoideum cDNA clone:dda46l11, 3' ... 1376 0.0 3
(BJ349712) Dictyostelium discoideum cDNA clone:dda37l11, 3' ... 1376 0.0 3
(BJ357340) Dictyostelium discoideum cDNA clone:dda63b10, 3' ... 1344 0.0 2
(BJ353090) Dictyostelium discoideum cDNA clone:dda48n23, 3' ... 1330 0.0 3
(BJ408354) Dictyostelium discoideum cDNA clone:dds45d18, 3' ... 1324 0.0 2
(BJ353581) Dictyostelium discoideum cDNA clone:dda50a20, 3' ... 1318 0.0 3
(BJ330682) Dictyostelium discoideum cDNA clone:dda32k11, 5' ... 1294 0.0 1
(BJ422139) Dictyostelium discoideum cDNA clone:ddv45a06, 5' ... 1245 0.0 1
(BJ357369) Dictyostelium discoideum cDNA clone:dda63h09, 3' ... 1231 0.0 1
(BJ327486) Dictyostelium discoideum cDNA clone:dda20j13, 5' ... 1225 0.0 1
(BJ352849) Dictyostelium discoideum cDNA clone:dda48k02, 3' ... 1219 0.0 3
(BJ348635) Dictyostelium discoideum cDNA clone:dda33h23, 3' ... 1215 0.0 1
(BJ349449) Dictyostelium discoideum cDNA clone:dda36d15, 3' ... 1189 0.0 2
(BJ356906) Dictyostelium discoideum cDNA clone:dda61g23, 3' ... 1158 0.0 1
(BJ344823) Dictyostelium discoideum cDNA clone:dda20j13, 3' ... 1118 0.0 3
(BJ385547) Dictyostelium discoideum cDNA clone:ddc55g10, 3' ... 989 0.0 2
(BJ349335) Dictyostelium discoideum cDNA clone:dda36m06, 3' ... 892 0.0 2
(BJ338847) Dictyostelium discoideum cDNA clone:dda63b10, 5' ... 860 0.0 3
(BJ331882) Dictyostelium discoideum cDNA clone:dda37l11, 5' ... 765 0.0 2
(BJ335102) Dictyostelium discoideum cDNA clone:dda48n23, 5' ... 672 0.0 2
(BJ370767) Dictyostelium discoideum cDNA clone:ddc55g10, 5' ... 672 0.0 2
(BJ370833) Dictyostelium discoideum cDNA clone:ddc55i14, 5' ... 666 0.0 2
(BJ397265) Dictyostelium discoideum cDNA clone:dds45n15, 5' ... 934 0.0 2
(BJ332982) Dictyostelium discoideum cDNA clone:dda41f05, 5' ... 664 0.0 2
(BJ336274) Dictyostelium discoideum cDNA clone:dda53g12, 5' ... 662 0.0 2
(BJ391717) Dictyostelium discoideum cDNA clone:dds24m22, 5' ... 670 0.0 2
(BJ331025) Dictyostelium discoideum cDNA clone:dda33j17, 5' ... 575 0.0 2
(BJ330845) Dictyostelium discoideum cDNA clone:dda32o24, 5' ... 575 0.0 2
(BJ331087) Dictyostelium discoideum cDNA clone:dda33h23, 5' ... 575 0.0 2
(BJ371172) Dictyostelium discoideum cDNA clone:ddc56o19, 5' ... 573 0.0 2
(BJ332744) Dictyostelium discoideum cDNA clone:dda40n15, 5' ... 571 0.0 2
(BJ334877) Dictyostelium discoideum cDNA clone:dda48k02, 5' ... 567 0.0 2
(BJ423469) Dictyostelium discoideum cDNA clone:ddv49f11, 5' ... 567 0.0 2
(BJ338877) Dictyostelium discoideum cDNA clone:dda63h09, 5' ... 567 0.0 2
(BJ336366) Dictyostelium discoideum cDNA clone:dda53k18, 5' ... 567 0.0 2
(BJ394478) Dictyostelium discoideum cDNA clone:dds35e11, 5' ... 565 0.0 2
(BJ339184) Dictyostelium discoideum cDNA clone:dda64n11, 5' ... 559 0.0 2
(BJ339656) Dictyostelium discoideum cDNA clone:dda58j24, 5' ... 557 0.0 2
(BJ396558) Dictyostelium discoideum cDNA clone:dds43i01, 5' ... 555 0.0 2
(BJ331652) Dictyostelium discoideum cDNA clone:dda36d15, 5' ... 567 0.0 2
(BJ333265) Dictyostelium discoideum cDNA clone:dda42f03, 5' ... 557 0.0 2
(BJ418631) Dictyostelium discoideum cDNA clone:ddv33p11, 5' ... 549 0.0 2
(BJ335564) Dictyostelium discoideum cDNA clone:dda50a20, 5' ... 567 0.0 3
(BJ395556) Dictyostelium discoideum cDNA clone:dds39f09, 5' ... 502 0.0 2
(BJ331814) Dictyostelium discoideum cDNA clone:dda36m06, 5' ... 502 0.0 2
(BJ331356) Dictyostelium discoideum cDNA clone:dda35b04, 5' ... 504 0.0 2
(BJ331006) Dictyostelium discoideum cDNA clone:dda33e14, 5' ... 494 0.0 2
(BJ393487) Dictyostelium discoideum cDNA clone:dds31a18, 5' ... 486 0.0 2
(BJ335651) Dictyostelium discoideum cDNA clone:dda51h04, 5' ... 446 0.0 3
(BJ357706) Dictyostelium discoideum cDNA clone:dda64n11, 3' ... 718 0.0 2
(BJ406453) Dictyostelium discoideum cDNA clone:dds35e11, 3' ... 670 0.0 3
(BJ380456) Dictyostelium discoideum cDNA clone:ddc38p04, 3' ... 686 0.0 2
(BJ365269) Dictyostelium discoideum cDNA clone:ddc34a24, 5' ... 367 0.0 2
(BJ440872) Dictyostelium discoideum cDNA clone:ddv45a06, 3' ... 601 e-167 1
(BJ334441) Dictyostelium discoideum cDNA clone:dda46l11, 5' ... 123 1e-33 2
(CA302967) taa01d08.y1 Hydra cDNA library Hydra magnipapilla... 76 5e-23 5
(BY949890) Physcomitrella patens subsp. patens cDNA clone: P... 72 4e-22 5
(CS480546) Sequence 1 from Patent WO2006134496. 72 7e-21 5
(CS458932) Sequence 1 from Patent EP1734125. 72 7e-21 5
(CX054860) taj02h05.y2 Hydra EST UCI 5 ALP Hydra magnipapill... 76 5e-20 3
(BY949900) Physcomitrella patens subsp. patens cDNA clone: P... 72 2e-19 5
(BH165037) ENTTE68TR Entamoeba histolytica Sheared DNA Entam... 64 3e-18 6
(DQ117988) Physcomitrella patens DNA mismatch repair protein... 70 1e-17 6
(CS480548) Sequence 3 from Patent WO2006134496. 70 1e-17 6
(CS458934) Sequence 3 from Patent EP1734125. 70 1e-17 6
(BH136983) ENTNM86TF Entamoeba histolytica Sheared DNA Entam... 64 4e-17 6
(DR914248) EST1105787 Aquilegia cDNA library Aquilegia formo... 70 3e-16 3
(DT733860) EST1167710 Aquilegia cDNA library Aquilegia formo... 70 1e-14 3
(EE008107) ROE00013444 Rhizopus oryzae Company Rhizopus oryz... 46 3e-14 4
(CX574123) TTE00022649 Amplicon Express - Conjugative Form T... 52 1e-13 4
(CX580476) TTE00023385 Amplicon Express - Conjugative Form T... 52 2e-13 4
(CX580660) TTE00033470 Amplicon Express - Conjugative Form T... 52 2e-13 4
(EF058885) Synthetic construct Saccharomyces cerevisiae clon... 48 3e-13 5
(EA376886) Sequence 25709 from patent US 7314974. 48 3e-13 5
(Z74832) S.cerevisiae chromosome XV reading frame ORF YOL090w. 48 5e-13 5
(EF015608) Tetrahymena thermophila putative mismatch repair ... 52 6e-13 5
(M84170) S.cerevisiae homologue of bacterial MutS protein (M... 48 6e-13 6
(EA247811) Sequence 1 from patent US 7229755. 48 6e-13 6

>(AC116960) Dictyostelium discoideum chromosome 2 map
complement(1004496-821614) strain AX4, complete sequence.
Length = 182870

Score = 3085 bits (1556), Expect = 0.0
Identities = 1556/1556 (100%)
Strand = Plus / Minus


Query: 329 ttgataatgatggttcattaacaacaactgcatcatcatcccaacaacaacaacaagaat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12131 ttgataatgatggttcattaacaacaactgcatcatcatcccaacaacaacaacaagaat 12072


Query: 389 taggattagcggtattaacaattagacaaggttatgaatttgaaaatatagttaaagaat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12071 taggattagcggtattaacaattagacaaggttatgaatttgaaaatatagttaaagaat 12012


Query: 449 tattagatgaaaagaaaaagattgaaatttggtcaatgaaaccaaatagtaaacaacaat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12011 tattagatgaaaagaaaaagattgaaatttggtcaatgaaaccaaatagtaaacaacaat 11952


Query: 509 gggaactaattaaaaaaggctcaccaggtaatacacaaatgtttgaagatgttttattga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11951 gggaactaattaaaaaaggctcaccaggtaatacacaaatgtttgaagatgttttattga 11892


Query: 569 atggtaattgtgaaggatcagttatgatggcattaaaagtcacaagagagaaaggttcaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11891 atggtaattgtgaaggatcagttatgatggcattaaaagtcacaagagagaaaggttcaa 11832


Query: 629 tcgtatttggtatatcatttggtgatgctactttcaagacaattggtgtttcacaattta 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11831 tcgtatttggtatatcatttggtgatgctactttcaagacaattggtgtttcacaattta 11772


Query: 689 tggataatgataatctatcgaatctttcaagttttataatgcaaatgagtgtaaaggaat 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11771 tggataatgataatctatcgaatctttcaagttttataatgcaaatgagtgtaaaggaat 11712


Query: 749 gcttgttatgttgtgatcaaaagaattatgattatcaaaaagttaaagagaaattatcag 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11711 gcttgttatgttgtgatcaaaagaattatgattatcaaaaagttaaagagaaattatcag 11652


Query: 809 atgcaggtataccattcacagaattaccaaaatcagatttctcctcaaagaatgccgaac 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11651 atgcaggtataccattcacagaattaccaaaatcagatttctcctcaaagaatgccgaac 11592


Query: 869 aagatttaactcgtttattgggttccgttaaaaataatttaccagatatcgaacaagagc 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11591 aagatttaactcgtttattgggttccgttaaaaataatttaccagatatcgaacaagagc 11532


Query: 929 atgccattcagtctgctagttgcttaattaaacatttggatttactttcaaatccaaatt 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11531 atgccattcagtctgctagttgcttaattaaacatttggatttactttcaaatccaaatt 11472


Query: 989 attttggtaaattcaaattggaaaaatatgatttagatagatatatgaaattagattctt 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11471 attttggtaaattcaaattggaaaaatatgatttagatagatatatgaaattagattctt 11412


Query: 1049 catcatttaaaggtttacatattattgatttaaaagattcttcagttagtgcagcagcag 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11411 catcatttaaaggtttacatattattgatttaaaagattcttcagttagtgcagcagcag 11352


Query: 1109 gtggtggtggtgcaggtggagcatcatctagttcaaataaagatcaaagtttatataatt 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11351 gtggtggtggtgcaggtggagcatcatctagttcaaataaagatcaaagtttatataatt 11292


Query: 1169 tattaaatcaatgtaatacaccaatgggatcaagattattattacaatgggtaaagcaac 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11291 tattaaatcaatgtaatacaccaatgggatcaagattattattacaatgggtaaagcaac 11232


Query: 1229 cattattaaatgcagaggaaatcgaagcaagattaaattttgtagaggcattttataatg 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11231 cattattaaatgcagaggaaatcgaagcaagattaaattttgtagaggcattttataatg 11172


Query: 1289 atttggagttacgtcaatctttaagatcaaatgatttgaagaaaattggtgatttagata 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11171 atttggagttacgtcaatctttaagatcaaatgatttgaagaaaattggtgatttagata 11112


Query: 1349 gattatcaaagaaattgcatggtcaaaaggctacattggaggattgtgtcaatttgtatg 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11111 gattatcaaagaaattgcatggtcaaaaggctacattggaggattgtgtcaatttgtatg 11052


Query: 1409 gtattgtcactagattaccagtggtattgcaatcattgaataatcatagtagtatacatc 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11051 gtattgtcactagattaccagtggtattgcaatcattgaataatcatagtagtatacatc 10992


Query: 1469 aagagttgattaaagttaatttcatagagagtttagagtctattatatcagattttgcta 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10991 aagagttgattaaagttaatttcatagagagtttagagtctattatatcagattttgcta 10932


Query: 1529 aattctgtgcaatggttgaaaaaaccatcgatttagatttggccaatgacaaacatgaat 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10931 aattctgtgcaatggttgaaaaaaccatcgatttagatttggccaatgacaaacatgaat 10872


Query: 1589 atgttattagatcaagtttcgatgagacattacgtggtattcaattgaagaaagatcaaa 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10871 atgttattagatcaagtttcgatgagacattacgtggtattcaattgaagaaagatcaaa 10812


Query: 1649 tttcaaataaaatcgaacgatttagagttgacattgctgatgatttgaatttagatgaag 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10811 tttcaaataaaatcgaacgatttagagttgacattgctgatgatttgaatttagatgaag 10752


Query: 1709 caaaagttaaattacattatagtgaaaaggatatgtttttattgagaatctcaagaaagg 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10751 caaaagttaaattacattatagtgaaaaggatatgtttttattgagaatctcaagaaagg 10692


Query: 1769 atgaggttgcaattagagataaaaagaaatacattgttcatgcaaccgctaaagatggtg 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10691 atgaggttgcaattagagataaaaagaaatacattgttcatgcaaccgctaaagatggtg 10632


Query: 1829 taagatttgccactagagaaatcgatactctaaatgaagcctataagaaatggtca 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10631 taagatttgccactagagaaatcgatactctaaatgaagcctataagaaatggtca 10576

Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Minus


Query: 2142 aggaccaaatatgggtggtaaatcaacatttattcgtcaagttggattaatagtattaat 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10186 aggaccaaatatgggtggtaaatcaacatttattcgtcaagttggattaatagtattaat 10127


Query: 2202 ggcacaaattggttgttttgtaccagcacaaaaagcaacaattgcagttgtcgattgtat 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10126 ggcacaaattggttgttttgtaccagcacaaaaagcaacaattgcagttgtcgattgtat 10067


Query: 2262 tttatcaagagttggtgcaggtgatagtcaattacgtggtgtttcaacatttatggcaga 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10066 tttatcaagagttggtgcaggtgatagtcaattacgtggtgtttcaacatttatggcaga 10007


Query: 2322 aatgttagagacatcttacattttaaaggttgcaactaaaaattctttaatcattattga 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10006 aatgttagagacatcttacattttaaaggttgcaactaaaaattctttaatcattattga 9947


Query: 2382 tgaacttggtagaggtacttcaacatatgatggttttggtttagcttggggtattgcaga 2441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9946 tgaacttggtagaggtacttcaacatatgatggttttggtttagcttggggtattgcaga 9887


Query: 2442 gtatatttgtaatcaaattggtggtttctgtctatttgcaactcatttccatgaattgac 2501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9886 gtatatttgtaatcaaattggtggtttctgtctatttgcaactcatttccatgaattgac 9827


Query: 2502 aattctatcagatttacttccaatggttaaaaatttacatgtttcagcttcaacccaaaa 2561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9826 aattctatcagatttacttccaatggttaaaaatttacatgtttcagcttcaacccaaaa 9767


Query: 2562 caatacttttactttactctataaagttgaacaaggtccttgtgatcaaagttttggtat 2621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9766 caatacttttactttactctataaagttgaacaaggtccttgtgatcaaagttttggtat 9707


Query: 2622 tcatgttgcaattttagcaaatttcccttcacaagttattgaaaatgcaaaacaaaaagc 2681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9706 tcatgttgcaattttagcaaatttcccttcacaagttattgaaaatgcaaaacaaaaagc 9647


Query: 2682 aaaagaattggaatcttttgaatcaaat 2709
||||||||||||||||||||||||||||
Sbjct: 9646 aaaagaattggaatcttttgaatcaaat 9619

Score = 337 bits (170), Expect(7) = 0.0
Identities = 170/170 (100%)
Strand = Plus / Minus


Query: 2710 acacttaaacaaaatcataataaatttttggaagaatttaaagaaattaatttcaattca 2769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432 acacttaaacaaaatcataataaatttttggaagaatttaaagaaattaatttcaattca 9373


Query: 2770 aatgatgtagaaaaatcattaagtttagttaatagtttattaaataaatattcaatagat 2829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9372 aatgatgtagaaaaatcattaagtttagttaatagtttattaaataaatattcaatagat 9313


Query: 2830 atcaattaataaaatatgaaatttctactaaaaatatcccccttccccaa 2879
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9312 atcaattaataaaatatgaaatttctactaaaaatatcccccttccccaa 9263

Score = 274 bits (138), Expect(7) = 0.0
Identities = 138/138 (100%)
Strand = Plus / Minus


Query: 74 cttcaataatgtcagataatgaacaagaagaatcatcacaagtagtattaaaggaggata 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12471 cttcaataatgtcagataatgaacaagaagaatcatcacaagtagtattaaaggaggata 12412


Query: 134 aaacctttgttacattttttcaaagtttagtatcctctaatgaagatacagacacaatta 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12411 aaacctttgttacattttttcaaagtttagtatcctctaatgaagatacagacacaatta 12352


Query: 194 gattatttgatagaaaag 211
||||||||||||||||||
Sbjct: 12351 gattatttgatagaaaag 12334

Score = 268 bits (135), Expect(7) = 0.0
Identities = 135/135 (100%)
Strand = Plus / Minus


Query: 1895 tttgattgaagatttatcatcattaattgcaacattggatgtatttgtaactttaagtca 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10507 tttgattgaagatttatcatcattaattgcaacattggatgtatttgtaactttaagtca 10448


Query: 1955 tgtatcttcaattgcaccaatcccattcattagaccagagattataccattaggtagtga 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10447 tgtatcttcaattgcaccaatcccattcattagaccagagattataccattaggtagtga 10388


Query: 2015 tgaaaatggtgctgg 2029
|||||||||||||||
Sbjct: 10387 tgaaaatggtgctgg 10373

Score = 230 bits (116), Expect(7) = 0.0
Identities = 116/116 (100%)
Strand = Plus / Minus


Query: 2029 ggcactgttattattggtggtcgtcatccatgtgtagaaattcaagataatgttaatttc 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10374 ggcactgttattattggtggtcgtcatccatgtgtagaaattcaagataatgttaatttc 10315


Query: 2089 attgcaaatgatattgatttaactcgtggtcaatcccaatttcaaattataacagg 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10314 attgcaaatgatattgatttaactcgtggtcaatcccaatttcaaattataacagg 10259

Score = 188 bits (95), Expect(7) = 0.0
Identities = 95/95 (100%)
Strand = Plus / Minus


Query: 2906 catatgaaatttaaaaatatctattttattgggtgaataataaagcatttcataattatt 2965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9236 catatgaaatttaaaaatatctattttattgggtgaataataaagcatttcataattatt 9177


Query: 2966 aatagttttaatactatttataatgtattgttaag 3000
|||||||||||||||||||||||||||||||||||
Sbjct: 9176 aatagttttaatactatttataatgtattgttaag 9142

Score = 107 bits (54), Expect(7) = 0.0
Identities = 54/54 (100%)
Strand = Plus / Minus


Query: 211 ggatattactcaattcatggtgaagatgcagtatttgtagcaatgatgcatttt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12249 ggatattactcaattcatggtgaagatgcagtatttgtagcaatgatgcatttt 12196

Score = 28.2 bits (14), Expect(7) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 1338 tgatttagatagat 1351
||||||||||||||
Sbjct: 11443 tgatttagatagat 11430

Score = 48.1 bits (24), Expect = 2.0
Identities = 27/28 (96%)
Strand = Plus / Minus


Query: 359 catcatcatcccaacaacaacaacaaga 386
|||||||||| |||||||||||||||||
Sbjct: 133531 catcatcatcacaacaacaacaacaaga 133504

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 3,783,553,274
Number of extensions: 244060234
Number of successful extensions: 24569507
Number of sequences better than 10.0: 966
Length of query: 3027
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 3002
Effective length of database: 97,216,030,006
Effective search space: 291842522078012
Effective search space used: 291842522078012
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Contig-U10996-1Q.Seq.d
(3027 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116960_5(AC116960|pid:none) Dictyostelium discoideum chromosom... 1044 0.0
(Q5XXB5) RecName: Full=DNA mismatch repair protein Msh2; AltName... 622 e-176
BC161846_1(BC161846|pid:none) Rattus norvegicus mutS homolog 2 (... 621 e-176
CR861269_1(CR861269|pid:none) Pongo abelii mRNA; cDNA DKFZp459K0... 617 e-175
(P43246) RecName: Full=DNA mismatch repair protein Msh2; AltName... 617 e-175
U21011_1(U21011|pid:none) Mus musculus MutS homolog 2 (mMSH2) mR... 617 e-174
AK223284_1(AK223284|pid:none) Homo sapiens mRNA for mutS homolog... 616 e-174
AK222860_1(AK222860|pid:none) Homo sapiens mRNA for mutS homolog... 615 e-174
BC050897_1(BC050897|pid:none) Mus musculus mutS homolog 2 (E. co... 615 e-174
(P43247) RecName: Full=DNA mismatch repair protein Msh2; AltName... 615 e-174
S53609(S53609)DNA mismatch repair protein MSH2 - African clawed ... 609 e-172
(P54275) RecName: Full=DNA mismatch repair protein Msh2; AltName... 607 e-171
AM270365_12(AM270365|pid:none) Aspergillus niger contig An16c013... 312 e-170
AB104853_1(AB104853|pid:none) Gallus gallus cMSH2 mRNA for hypot... 601 e-170
DQ863303_1(DQ863303|pid:none) Penicillium marneffei MSH2-like pr... 305 e-169
AP007151_1075(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 310 e-169
BC044370_1(BC044370|pid:none) Danio rerio mutS homolog 2 (E. col... 595 e-168
BC165693_1(BC165693|pid:none) Danio rerio mutS homolog 2 (E. col... 593 e-167
AF412833_1(AF412833|pid:none) Danio rerio mismatch repair protei... 591 e-167
AE017341_740(AE017341|pid:none) Cryptococcus neoformans var. neo... 572 e-161
AK297763_1(AK297763|pid:none) Homo sapiens cDNA FLJ50998 complet... 567 e-160
CR380955_328(CR380955|pid:none) Candida glabrata strain CBS138 c... 300 e-152
AY650007_1(AY650007|pid:none) Petunia x hybrida DNA mismatch rep... 291 e-152
L47580_1(L47580|pid:none) Homo sapiens DNA mismatch repair prote... 524 e-147
CR382126_116(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 293 e-146
AB364512_1(AB364512|pid:none) Mesocricetus auratus MSH2 mRNA for... 515 e-144
AK296831_1(AK296831|pid:none) Homo sapiens cDNA FLJ57316 complet... 514 e-144
FN392319_1433(FN392319|pid:none) Pichia pastoris GS115 chromosom... 293 e-143
CP000581_81(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ... 274 e-140
AE016819_836(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 501 e-140
CU928174_258(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 493 e-137
CR954210_211(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 278 e-137
AF109243_1(AF109243|pid:none) Arabidopsis thaliana mismatch repa... 484 e-134
AP008211_698(AP008211|pid:none) Oryza sativa (japonica cultivar-... 479 e-133
EU327761_1(EU327761|pid:none) Hartmannella vermiformis strain CD... 475 e-132
AB179432_1(AB179432|pid:none) Macaca fascicularis testis cDNA cl... 442 e-122
(P43248) RecName: Full=DNA mismatch repair protein spellchecker ... 424 e-116
CR382134_678(CR382134|pid:none) Debaryomyces hansenii strain CBS... 251 e-114
CP000501_375(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 395 e-108
FN357680_2(FN357680|pid:none) Schistosoma mansoni genome sequenc... 391 e-107
FM992691_629(FM992691|pid:none) Candida dubliniensis CD36 chromo... 385 e-105
AM502251_41(AM502251|pid:none) Leishmania infantum chromosome 33. 209 8e-96
AY026905_1(AY026905|pid:none) Trypanosoma brucei putative mismat... 215 4e-95
AM910995_231(AM910995|pid:none) Plasmodium knowlesi strain H chr... 352 6e-95
AM494970_40(AM494970|pid:none) Leishmania braziliensis chromosom... 206 2e-94
BT055046_1(BT055046|pid:none) Zea mays full-length cDNA clone ZM... 344 1e-92
CT005270_55(CT005270|pid:none) Leishmania major strain Friedlin,... 207 1e-92
AF106587_1(AF106587|pid:none) Caenorhabditis elegans fosmid H26D... 194 5e-92
AL844506_74(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 332 4e-89
L47579_1(L47579|pid:none) Homo sapiens DNA mismatch repair prote... 304 1e-80
DQ321769_1(DQ321769|pid:none) Trichomonas vaginalis strain NIH-C... 297 1e-78
AE014134_2579(AE014134|pid:none) Drosophila melanogaster chromos... 297 1e-78
AL031786_12(AL031786|pid:none) S.pombe chromosome II cosmid c24C6. 278 8e-73
(A4XL47) RecName: Full=DNA mismatch repair protein mutS; &CP000... 278 1e-72
(B1IM68) RecName: Full=DNA mismatch repair protein mutS; &CP000... 276 2e-72
(Q8RA71) RecName: Full=DNA mismatch repair protein mutS; &AE008... 275 5e-72
CP001393_1432(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 275 5e-72
(A7GE45) RecName: Full=DNA mismatch repair protein mutS; &CP000... 272 5e-71
CP001581_1819(CP001581|pid:none) Clostridium botulinum A2 str. K... 272 5e-71
(B1KSA3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 271 8e-71
CP000924_1155(CP000924|pid:none) Thermoanaerobacter pseudethanol... 270 2e-70
(A0Q0M6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 269 4e-70
AP008971_743(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 266 3e-69
(A7GR99) RecName: Full=DNA mismatch repair protein mutS; &CP000... 264 2e-68
(B7HLA3) RecName: Full=DNA mismatch repair protein mutS; &CP001... 261 8e-68
(A0RHE1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 261 8e-68
(Q81WR3) RecName: Full=DNA mismatch repair protein mutS; &AE016... 261 8e-68
(Q6HF46) RecName: Full=DNA mismatch repair protein mutS; &AE017... 261 8e-68
(B7HDP4) RecName: Full=DNA mismatch repair protein mutS; &CP001... 261 1e-67
(Q636Q7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 261 1e-67
AP009484_890(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 260 2e-67
(B7ITM1) RecName: Full=DNA mismatch repair protein mutS; &CP001... 260 2e-67
CP000922_1502(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 260 2e-67
(A8FST7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 259 3e-67
(Q8TTB4) RecName: Full=DNA mismatch repair protein mutS; &AE010... 259 3e-67
AL009126_1761(AL009126|pid:none) Bacillus subtilis subsp. subtil... 259 5e-67
(A8H1T4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 258 7e-67
(A8F164) RecName: Full=DNA mismatch repair protein mutS; &CP000... 257 2e-66
(B0TK13) RecName: Full=DNA mismatch repair protein mutS; &CP000... 257 2e-66
(Q4UM86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 257 2e-66
(A8GMX2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 256 3e-66
(Q086A1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 256 3e-66
(A6WR19) RecName: Full=DNA mismatch repair protein mutS; &CP000... 256 3e-66
(A9VS13) RecName: Full=DNA mismatch repair protein mutS; &CP000... 256 3e-66
(A3QC86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 256 5e-66
(Q46CE2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 256 5e-66
CP001227_536(CP001227|pid:none) Rickettsia peacockii str. Rustic... 255 8e-66
(A6LLR1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 254 1e-65
EU652258_1(EU652258|pid:none) Vibrio parahaemolyticus strain J-C... 254 2e-65
CP001252_1214(CP001252|pid:none) Shewanella baltica OS223, compl... 254 2e-65
EU652259_1(EU652259|pid:none) Vibrio parahaemolyticus strain J-C... 254 2e-65
(A3D786) RecName: Full=DNA mismatch repair protein mutS; &CP000... 254 2e-65
EU652253_1(EU652253|pid:none) Vibrio parahaemolyticus strain ATC... 254 2e-65
(A1S4E6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 254 2e-65
(Q87LQ9) RecName: Full=DNA mismatch repair protein mutS; &BA000... 253 2e-65
FM954972_2463(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 253 4e-65
(A5CDU2) RecName: Full=DNA mismatch repair protein mutS; &AM494... 252 5e-65
(Q5M1Z0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 252 5e-65
(Q03MY4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 252 6e-65
(Q8PWA7) RecName: Full=DNA mismatch repair protein mutS; &AE008... 251 8e-65
(A4W4J7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 251 8e-65
(Q68X73) RecName: Full=DNA mismatch repair protein mutS; &AE017... 251 1e-64
(A8GX86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 250 2e-64
AF091119_1(AF091119|pid:none) Lactococcus lactis DNA mismatch re... 249 4e-64
AP008981_431(AP008981|pid:none) Orientia tsutsugamushi str. Iked... 249 4e-64
(Q8EBR9) RecName: Full=DNA mismatch repair protein mutS; &AE014... 249 4e-64
(A1RHG2) RecName: Full=DNA mismatch repair protein mutS; &(A4Y9... 249 4e-64
L47577_1(L47577|pid:none) Homo sapiens DNA mismatch repair prote... 249 6e-64
CP001485_53(CP001485|pid:none) Vibrio cholerae MJ-1236 chromosom... 249 6e-64
(A0KU91) RecName: Full=DNA mismatch repair protein mutS; &CP000... 249 6e-64
(Q7MHR2) RecName: Full=DNA mismatch repair protein mutS; 248 7e-64
AM946015_1742(AM946015|pid:none) Streptococcus uberis 0140J comp... 248 7e-64
(A3CR17) RecName: Full=DNA mismatch repair protein mutS; &CP000... 248 7e-64
CP001098_1154(CP001098|pid:none) Halothermothrix orenii H 168, c... 248 7e-64
(Q9CDK9) RecName: Full=DNA mismatch repair protein mutS; &AE005... 248 7e-64
BA000037_2807(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 248 7e-64
(A8FDH3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 248 7e-64
CP000853_1527(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 248 9e-64
(A8EZG1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 248 1e-63
CP001615_102(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 248 1e-63
(Q15QR9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 247 2e-63
(Q0HL63) RecName: Full=DNA mismatch repair protein mutS; &CP000... 247 2e-63
(Q03VV4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 247 2e-63
(Q1J489) RecName: Full=DNA mismatch repair protein mutS; &CP000... 247 2e-63
(A8GRI6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 247 2e-63
(Q02VS3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 246 3e-63
(Q92IL9) RecName: Full=DNA mismatch repair protein mutS; &A9775... 246 5e-63
(A2RP10) RecName: Full=DNA mismatch repair protein mutS; &AM406... 245 6e-63
CP001612_324(CP001612|pid:none) Rickettsia africae ESF-5, comple... 245 6e-63
FM204883_2064(FM204883|pid:none) Streptococcus equi subsp. equi ... 245 8e-63
CP001129_1820(CP001129|pid:none) Streptococcus equi subsp. zooep... 245 8e-63
FM204884_1891(FM204884|pid:none) Streptococcus equi subsp. zooep... 245 8e-63
(B0UWV7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 244 1e-62
(A4IMI0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 244 2e-62
(A0L7L5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 243 2e-62
CP001091_1664(CP001091|pid:none) Actinobacillus pleuropneumoniae... 243 2e-62
(Q12PY3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 243 3e-62
(Q1JEH0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 243 4e-62
(Q2SBR5) RecName: Full=DNA mismatch repair protein mutS; 243 4e-62
CP000155_4989(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 243 4e-62
(Q1J9C1) RecName: Full=DNA mismatch repair protein mutS; &(Q1JJ... 242 5e-62
(Q8K5J5) RecName: Full=DNA mismatch repair protein mutS; &AE014... 242 5e-62
CU468135_2694(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 242 5e-62
(Q48QT6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 242 5e-62
(Q99XL8) RecName: Full=DNA mismatch repair protein mutS; &AE004... 242 7e-62
CP001336_2691(CP001336|pid:none) Desulfitobacterium hafniense DC... 241 9e-62
DQ423216_1(DQ423216|pid:none) Haemophilus influenzae strain 11P6... 241 9e-62
(Q82ZA2) RecName: Full=DNA mismatch repair protein mutS; &AE016... 241 9e-62
(Q1WT15) RecName: Full=DNA mismatch repair protein mutS; &CP000... 241 1e-61
(A5UE20) RecName: Full=DNA mismatch repair protein mutS; &CP000... 241 1e-61
(P44834) RecName: Full=DNA mismatch repair protein mutS; &G6408... 241 1e-61
(B0BRS8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 241 1e-61
(Q5E7G7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 240 2e-61
(Q65QA9) RecName: Full=DNA mismatch repair protein mutS; &AE016... 240 2e-61
(Q5QUB6) RecName: Full=DNA mismatch repair protein mutS; 240 3e-61
(A8AZU4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 240 3e-61
(Q5WFY3) RecName: Full=DNA mismatch repair protein mutS; &AP006... 240 3e-61
CP001102_713(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 240 3e-61
(Q89AD3) RecName: Full=DNA mismatch repair protein mutS; &AE016... 239 3e-61
CP000817_1607(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 239 4e-61
AJ783431_1(AJ783431|pid:none) Pseudomonas stutzeri mutS gene for... 239 4e-61
AY568596_1(AY568596|pid:none) Haemophilus influenzae isolate R46... 239 6e-61
(Q6D8C1) RecName: Full=DNA mismatch repair protein mutS; &BX950... 239 6e-61
(Q8RFK2) RecName: Full=DNA mismatch repair protein mutS; &AE009... 239 6e-61
(Q38YR4) RecName: Full=DNA mismatch repair protein mutS; &CR936... 238 1e-60
(Q2S254) RecName: Full=DNA mismatch repair protein mutS; &CP000... 238 1e-60
(Q82U08) RecName: Full=DNA mismatch repair protein mutS; &AL954... 238 1e-60
(A6VL76) RecName: Full=DNA mismatch repair protein mutS; &CP000... 238 1e-60
(Q03EQ7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 238 1e-60
AM980469_1(AM980469|pid:none) Staphylococcus aureus subsp. aureu... 237 2e-60
(Q6AQ04) RecName: Full=DNA mismatch repair protein mutS; &CR522... 237 2e-60
(Q0TEC9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 237 2e-60
(Q8FEL3) RecName: Full=DNA mismatch repair protein mutS; &AE014... 237 2e-60
CP000921_1883(CP000921|pid:none) Streptococcus pneumoniae Taiwan... 237 2e-60
CU928162_3109(CU928162|pid:none) Escherichia coli ED1a chromosom... 237 2e-60
(Q4QML2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 237 2e-60
(B7LWH8) RecName: Full=DNA mismatch repair protein mutS; &(B7N6... 237 2e-60
AL021839_1(AL021839|pid:none) S.pombe chromosome II cosmid c19G7. 237 2e-60
CP001600_3128(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 236 3e-60
AE007317_1885(AE007317|pid:none) Streptococcus pneumoniae R6, co... 236 3e-60
(Q5FLX5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 236 3e-60
CP000930_2497(CP000930|pid:none) Heliobacterium modesticaldum Ic... 236 3e-60
(P0A3R3) RecName: Full=DNA mismatch repair protein hexA; &(P0A3... 236 3e-60
AY568593_1(AY568593|pid:none) Haemophilus influenzae isolate C24... 236 3e-60
(Q4KHE3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 236 4e-60
(A4SIL2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 235 6e-60
(Q88UZ7) RecName: Full=DNA mismatch repair protein mutS; &AL935... 235 8e-60
(B6I6B9) RecName: Full=DNA mismatch repair protein mutS; &AP009... 235 8e-60
(Q7VKA1) RecName: Full=DNA mismatch repair protein mutS; &AE017... 235 8e-60
CP001015_1945(CP001015|pid:none) Streptococcus pneumoniae G54, c... 235 8e-60
(A7ZQH3) RecName: Full=DNA mismatch repair protein mutS; 234 1e-59
U69873_1(U69873|pid:none) Escherichia coli DNA mismatch repair p... 234 1e-59
AE005174_3608(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 234 1e-59
(B5Z397) RecName: Full=DNA mismatch repair protein mutS; &(B7LX... 234 1e-59
AF440200_1(AF440200|pid:none) Escherichia coli strain B MutS (mu... 234 1e-59
CP000970_2767(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 234 1e-59
(A8A3L2) RecName: Full=DNA mismatch repair protein mutS; &(B1IU... 234 1e-59
DQ489736_1297(DQ489736|pid:none) Leuconostoc citreum KM20, compl... 234 1e-59
(Q8DWW1) RecName: Full=DNA mismatch repair protein mutS; &(Q8E2... 233 2e-59
(Q32CJ6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 233 3e-59
AY150295_1(AY150295|pid:none) Enterococcus faecium strain E0013 ... 233 4e-59
(A7FLX1) RecName: Full=DNA mismatch repair protein mutS; &(Q66E... 232 5e-59
(Q1LTQ0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 232 5e-59
(A1JJU1) RecName: Full=DNA mismatch repair protein mutS; &AM286... 232 7e-59
(A4TQ04) RecName: Full=DNA mismatch repair protein mutS; &(Q1CL... 232 7e-59
CP001357_1111(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 232 7e-59
CP001321_1328(CP001321|pid:none) Haemophilus parasuis SH0165, co... 232 7e-59
(B1YMD7) RecName: Full=DNA mismatch repair protein mutS; &CP001... 231 1e-58
CP001277_1460(CP001277|pid:none) Candidatus Hamiltonella defensa... 231 1e-58
(Q3JYM3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 231 1e-58
AY150298_1(AY150298|pid:none) Enterococcus faecium strain C1 Mut... 231 1e-58
AJ783432_1(AJ783432|pid:none) Pseudomonas stutzeri mutS gene for... 231 2e-58
(B0KSD2) RecName: Full=DNA mismatch repair protein mutS; 229 3e-58
AM181176_1138(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 229 5e-58
(Q47WN0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 229 6e-58
CP001097_1643(CP001097|pid:none) Chlorobium limicola DSM 245, co... 229 6e-58
(A6W1Q6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 229 6e-58
(A4G717) RecName: Full=DNA mismatch repair protein mutS; &CU207... 227 2e-57
CP001161_392(CP001161|pid:none) Buchnera aphidicola str. 5A (Acy... 227 2e-57
CP001158_390(CP001158|pid:none) Buchnera aphidicola str. Tuc7 (A... 227 2e-57
(P57504) RecName: Full=DNA mismatch repair protein mutS; &BA000... 227 2e-57
CP001071_338(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 227 2e-57
(B7GW85) RecName: Full=DNA mismatch repair protein mutS; &(B7IB... 226 4e-57
(A4VJN9) RecName: Full=DNA mismatch repair protein mutS; 226 5e-57
AY705787_1(AY705787|pid:none) Canis familiaris mutS-like protein... 210 6e-57
CP000969_1099(CP000969|pid:none) Thermotoga sp. RQ2, complete ge... 225 9e-57
CU466930_904(CU466930|pid:none) Candidatus Cloacamonas acidamino... 224 1e-56
(Q6LMU0) RecName: Full=DNA mismatch repair protein mutS; &CR378... 224 2e-56
(O83348) RecName: Full=DNA mismatch repair protein mutS; &AE000... 224 2e-56
(A5W816) RecName: Full=DNA mismatch repair protein mutS; &CP000... 223 3e-56
CP000951_174(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 223 3e-56
BA000022_1243(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 223 4e-56
(Q88ME7) RecName: Full=DNA mismatch repair protein mutS; &AE015... 223 4e-56
(Q3M892) RecName: Full=DNA mismatch repair protein mutS; &CP000... 222 6e-56
(Q9Z6W5) RecName: Full=DNA mismatch repair protein mutS; &AE002... 222 7e-56
CP000675_1894(CP000675|pid:none) Legionella pneumophila str. Cor... 221 9e-56
(B2KB17) RecName: Full=DNA mismatch repair protein mutS; &CP001... 221 1e-55
(A6V1G8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 221 2e-55
AF400583_1(AF400583|pid:none) Acinetobacter sp. 93A2 mismatch re... 221 2e-55
(Q60BA1) RecName: Full=DNA mismatch repair protein mutS; &AE017... 220 2e-55
(A6TR79) RecName: Full=DNA mismatch repair protein mutS; &CP000... 220 2e-55
(Q5UZG9) RecName: Full=DNA mismatch repair protein mutS 1; 220 3e-55
(Q3IDC8) RecName: Full=DNA mismatch repair protein mutS; &CR954... 220 3e-55
AY596297_2248(AY596297|pid:none) Haloarcula marismortui ATCC 430... 220 3e-55
(Q9HY08) RecName: Full=DNA mismatch repair protein mutS; &AE004... 219 4e-55
CU694395_37(CU694395|pid:none) Ralstonia solanacearum strain Mol... 219 5e-55
(Q6FC54) RecName: Full=DNA mismatch repair protein mutS; &CR543... 219 5e-55
CU914168_1704(CU914168|pid:none) Ralstonia solanacearum strain I... 219 5e-55
AF400582_3(AF400582|pid:none) Acinetobacter sp. ADP1 mismatch re... 219 5e-55
CP000237_321(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 219 5e-55
(Q5X4B2) RecName: Full=DNA mismatch repair protein mutS; &CR628... 219 6e-55
CP001154_372(CP001154|pid:none) Laribacter hongkongensis HLHK9, ... 218 8e-55
(Q3KH79) RecName: Full=DNA mismatch repair protein mutS; &CP000... 218 8e-55
AP010656_384(AP010656|pid:none) Candidatus Azobacteroides pseudo... 218 1e-54
CP001096_510(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 218 1e-54
AF220055_1(AF220055|pid:none) Pseudomonas aeruginosa mismatch re... 218 1e-54
(Q8Y093) RecName: Full=DNA mismatch repair protein mutS; &AL646... 218 1e-54
(Q30ZX3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 217 2e-54
CP001175_1147(CP001175|pid:none) Listeria monocytogenes HCC23, c... 217 2e-54
(A6WV86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 217 2e-54
CP001068_974(CP001068|pid:none) Ralstonia pickettii 12J chromoso... 217 2e-54
AY268717_1(AY268717|pid:none) Salmonella enterica strain SARB71 ... 216 3e-54
AF383974_1(AF383974|pid:none) Salmonella enterica strain S2980 m... 216 4e-54
(A9MF43) RecName: Full=DNA mismatch repair protein mutS; &CP000... 216 4e-54
(A0B976) RecName: Full=DNA mismatch repair protein mutS; &CP000... 216 4e-54
(Q045Q5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 216 5e-54
(Q0VNJ1) RecName: Full=DNA mismatch repair protein mutS; &AM286... 216 5e-54
(Q7V9M5) RecName: Full=DNA mismatch repair protein mutS; &AE017... 216 5e-54
(A0AIK5) RecName: Full=DNA mismatch repair protein mutS; &AM263... 215 7e-54
(B1JB25) RecName: Full=DNA mismatch repair protein mutS; &CP000... 215 7e-54
(Q0A8K3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 215 9e-54
AY268716_1(AY268716|pid:none) Salmonella enterica strain SARB17 ... 215 9e-54
(Q92BV3) RecName: Full=DNA mismatch repair protein mutS; &AG161... 215 9e-54
CP001229_6(CP001229|pid:none) Sulfurihydrogenibium azorense Az-F... 215 9e-54
CP001108_1551(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 215 9e-54
(A7NPT5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 215 9e-54
(A5UZK7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 215 9e-54
AM933172_2737(AM933172|pid:none) Salmonella enterica subsp. ente... 214 1e-53
CP001127_2849(CP001127|pid:none) Salmonella enterica subsp. ente... 214 1e-53
AY268715_1(AY268715|pid:none) Salmonella enterica strain SARB57 ... 214 1e-53
(Q8CXG6) RecName: Full=DNA mismatch repair protein mutS; &BA000... 214 1e-53
(B7J0P3) RecName: Full=DNA mismatch repair protein mutS; &(O517... 214 1e-53
FJ539011_1(FJ539011|pid:none) Salmonella enterica subsp. enteric... 214 1e-53
(Q5L0E5) RecName: Full=DNA mismatch repair protein mutS; &BA000... 214 1e-53
FM200053_2709(FM200053|pid:none) Salmonella enterica subsp. ente... 214 1e-53
CP000857_2849(CP000857|pid:none) Salmonella enterica subsp. ente... 214 1e-53
(Q5PEE6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 214 1e-53
(A9N1F8) RecName: Full=DNA mismatch repair protein mutS; &(P0A1... 214 1e-53
(Q1QZX5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 214 1e-53
CP001144_2921(CP001144|pid:none) Salmonella enterica subsp. ente... 214 1e-53
AY268734_1(AY268734|pid:none) Salmonella enterica strain SARB12 ... 214 1e-53
CP001113_2922(CP001113|pid:none) Salmonella enterica subsp. ente... 214 1e-53
(Q21LB1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 214 2e-53
AY268735_1(AY268735|pid:none) Salmonella enterica strain SARB55 ... 214 2e-53
(A5N8I5) RecName: Full=DNA mismatch repair protein mutS; &AP009... 214 2e-53
(A1K764) RecName: Full=DNA mismatch repair protein mutS; 214 2e-53
AY268750_1(AY268750|pid:none) Salmonella enterica strain SARB61 ... 214 2e-53
(Q5WVP6) RecName: Full=DNA mismatch repair protein mutS; &CR628... 213 3e-53
(Q1IN52) RecName: Full=DNA mismatch repair protein mutS; &CP000... 213 3e-53
(Q07V29) RecName: Full=DNA mismatch repair protein mutS; &CP000... 213 3e-53
AY268700_1(AY268700|pid:none) Salmonella enterica strain SARB32 ... 213 3e-53
CP000521_1342(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 213 4e-53
(Q0AYB5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 212 7e-53
AF383975_1(AF383975|pid:none) Salmonella enterica strain S2983 m... 211 1e-52
EU723250_1(EU723250|pid:none) Francisella philomiragia subsp. no... 211 1e-52
EU682972_1(EU682972|pid:none) Francisella philomiragia subsp. no... 211 1e-52
(B5XV49) RecName: Full=DNA mismatch repair protein mutS; &CP000... 211 1e-52
(Q2NVL9) RecName: Full=DNA mismatch repair protein mutS; &AP008... 211 1e-52
(A6TD24) RecName: Full=DNA mismatch repair protein mutS; &AP006... 211 1e-52
CP000386_287(CP000386|pid:none) Rubrobacter xylanophilus DSM 994... 211 1e-52
(Q8KCC0) RecName: Full=DNA mismatch repair protein mutS; &AE006... 211 2e-52
CP001339_1263(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 211 2e-52
EU682969_1(EU682969|pid:none) Francisella philomiragia subsp. ph... 210 2e-52
(B8FJL5) RecName: Full=DNA mismatch repair protein mutS; &CP001... 210 2e-52
(Q01X96) RecName: Full=DNA mismatch repair protein mutS; &CP000... 210 2e-52
(A5FJ63) RecName: Full=DNA mismatch repair protein mutS; 210 3e-52
(A0Q809) RecName: Full=DNA mismatch repair protein mutS; &CP000... 210 3e-52
CP001275_1061(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 210 3e-52
(Q8Y789) RecName: Full=DNA mismatch repair protein mutS; &AC125... 210 3e-52
FM872307_807(FM872307|pid:none) Chlamydia trachomatis B/TZ1A828/... 210 3e-52
EU682965_1(EU682965|pid:none) Francisella philomiragia subsp. ph... 209 4e-52
L47576_1(L47576|pid:none) Homo sapiens DNA mismatch repair prote... 209 4e-52
(Q3KKQ0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 209 4e-52
CP000934_2294(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 209 4e-52
(A9WFZ9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 209 4e-52
EU682968_1(EU682968|pid:none) Francisella philomiragia subsp. ph... 209 4e-52
CU633749_1161(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 209 6e-52
(A5ILG0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 209 6e-52
AM884176_161(AM884176|pid:none) Chlamydia trachomatis strain L2/... 209 6e-52
CP000806_2150(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 209 6e-52
FM242711_1386(FM242711|pid:none) Listeria monocytogenes Clip8145... 208 1e-51
EU682970_1(EU682970|pid:none) Francisella noatunensis subsp. ori... 207 1e-51
EU682967_1(EU682967|pid:none) Francisella philomiragia subsp. ph... 207 1e-51
CP001230_748(CP001230|pid:none) Persephonella marina EX-H1, comp... 207 1e-51
(Q12VC9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 207 1e-51
CP001107_1683(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 207 2e-51
CP001348_1660(CP001348|pid:none) Clostridium cellulolyticum H10,... 207 2e-51
AM778956_116(AM778956|pid:none) Microcystis aeruginosa PCC 7806 ... 207 2e-51
(A6GWN3) RecName: Full=DNA mismatch repair protein mutS; &AM398... 207 2e-51
(Q2RJG2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 206 3e-51
(A1VLZ6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 206 3e-51
(Q0BNM7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 206 4e-51
(A9GIM9) RecName: Full=DNA mismatch repair protein mutS; &AM746... 206 4e-51
(Q46IE5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 206 5e-51
(Q5NYP9) RecName: Full=DNA mismatch repair protein mutS; &CR555... 206 5e-51
CP001078_1605(CP001078|pid:none) Clostridium botulinum E3 str. A... 206 5e-51
CP001056_1751(CP001056|pid:none) Clostridium botulinum B str. Ek... 205 7e-51
(A9KG24) RecName: Full=DNA mismatch repair protein mutS; 205 7e-51
(Q5HBQ7) RecName: Full=DNA mismatch repair protein mutS; &CR767... 205 9e-51
(Q5FHE8) RecName: Full=DNA mismatch repair protein mutS; &CR925... 204 1e-50
(Q3SJP0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 204 1e-50
CP001390_2732(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 204 2e-50
(A4SFT1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 204 2e-50
(Q3A4F1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 203 3e-50
(Q2N5V9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 203 3e-50
AM982525_1(AM982525|pid:none) Pseudomonas avellanae partial mutS... 203 3e-50
(Q0KCC0) RecName: Full=DNA mismatch repair protein mutS; &AM260... 203 3e-50
AY814227_1(AY814227|pid:none) Schistosoma japonicum SJCHGC00949 ... 203 3e-50
(Q2KWZ4) RecName: Full=DNA mismatch repair protein mutS; &AM167... 203 3e-50
(Q48F92) RecName: Full=DNA mismatch repair protein mutS; &CP000... 202 5e-50
(P61666) RecName: Full=DNA mismatch repair protein mutS; &AE017... 202 5e-50
(P27345) RecName: Full=DNA mismatch repair protein mutS; &A5329... 202 5e-50
(A1VDD9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 202 5e-50
(A9ILT1) RecName: Full=DNA mismatch repair protein mutS; &AM260... 202 6e-50
(Q83CQ2) RecName: Full=DNA mismatch repair protein mutS; 202 6e-50
CP001344_3540(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 202 6e-50
(A9NCN3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 202 6e-50
(Q7NRW7) RecName: Full=DNA mismatch repair protein mutS; &AE016... 202 8e-50
(Q5NL79) RecName: Full=DNA mismatch repair protein mutS; &AE008... 202 8e-50
(Q255T1) RecName: Full=DNA mismatch repair protein mutS; &AP006... 201 1e-49
(A5FQC0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 201 1e-49
(Q3Z767) RecName: Full=DNA mismatch repair protein mutS; &CP000... 201 1e-49
(Q7NLT8) RecName: Full=DNA mismatch repair protein mutS; &BA000... 201 1e-49
CP001100_93(CP001100|pid:none) Chloroherpeton thalassium ATCC 35... 201 2e-49
(A7HC64) RecName: Full=DNA mismatch repair protein mutS; &CP000... 201 2e-49
(A9KL10) RecName: Full=DNA mismatch repair protein mutS; &CP000... 201 2e-49
(Q1I659) RecName: Full=DNA mismatch repair protein mutS; &CT573... 200 2e-49
AP009153_3911(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 200 2e-49
AB039965_2(AB039965|pid:none) Pseudomonas putida icd, mutS, fdxA... 200 2e-49
CP000875_4058(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 200 3e-49
CP000941_1125(CP000941|pid:none) Xylella fastidiosa M12, complet... 200 3e-49
(Q8K9D2) RecName: Full=DNA mismatch repair protein mutS; &AE013... 200 3e-49
CP001001_605(CP001001|pid:none) Methylobacterium radiotolerans J... 200 3e-49
CP001196_121(CP001196|pid:none) Oligotropha carboxidovorans OM5 ... 199 4e-49
CP000248_3279(CP000248|pid:none) Novosphingobium aromaticivorans... 199 4e-49
(Q13ED0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 199 4e-49
(Q2KD76) RecName: Full=DNA mismatch repair protein mutS; &CP000... 199 5e-49
(Q9PCR2) RecName: Full=DNA mismatch repair protein mutS; 199 5e-49
(Q6MBV4) RecName: Full=DNA mismatch repair protein mutS; &BX908... 199 5e-49
(A7HMG4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 199 5e-49
(Q8YES6) RecName: Full=DNA mismatch repair protein mutS; 199 7e-49
CP000356_2770(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 199 7e-49
CP000908_4222(CP000908|pid:none) Methylobacterium extorquens PA1... 199 7e-49
CP001488_135(CP001488|pid:none) Brucella melitensis ATCC 23457 c... 199 7e-49
AC3477(AC3477) DNA mismatch repair protein mutS [imported] - Bru... 199 7e-49
AM980462_1(AM980462|pid:none) Staphylococcus aureus subsp. aureu... 198 9e-49
AF245440_4(AF245440|pid:none) Pseudomonas fluorescens lipoprotei... 198 9e-49
(Q7UZL6) RecName: Full=DNA mismatch repair protein mutS; &BX548... 198 9e-49
CP001029_4699(CP001029|pid:none) Methylobacterium populi BJ001, ... 198 9e-49
(Q49X88) RecName: Full=DNA mismatch repair protein mutS; &AP008... 198 1e-48
(A6LG92) RecName: Full=DNA mismatch repair protein mutS; &CP000... 198 1e-48
(Q2FYZ9) RecName: Full=DNA mismatch repair protein mutS; &AF378... 198 1e-48
(A1AMW9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 198 1e-48
CP000301_359(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 197 1e-48
(Q21CE8) RecName: Full=DNA mismatch repair protein mutS; 197 1e-48
(Q67NK1) RecName: Full=DNA mismatch repair protein mutS; &AP006... 197 2e-48
CP001280_2272(CP001280|pid:none) Methylocella silvestris BL2, co... 197 2e-48
CP000633_325(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 197 2e-48
(Q2LUL3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 197 2e-48
CP001281_2220(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 197 2e-48
CP000628_483(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 197 2e-48
(A3PFD3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 197 2e-48
(A1KWM6) RecName: Full=DNA mismatch repair protein mutS; &AM421... 196 3e-48
(Q8PMX2) RecName: Full=DNA mismatch repair protein mutS; &AE008... 196 3e-48
(O66652) RecName: Full=DNA mismatch repair protein mutS; &AE000... 196 3e-48
(Q9JX94) RecName: Full=DNA mismatch repair protein mutS; &A8100... 196 3e-48
(A5GQ22) RecName: Full=DNA mismatch repair protein mutS; &CT978... 196 3e-48
CP000090_1107(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 196 3e-48
CP001111_1166(CP001111|pid:none) Stenotrophomonas maltophilia R5... 196 3e-48
(A4JFW7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 196 4e-48
CP000967_3186(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 196 6e-48
(A5VA00) RecName: Full=DNA mismatch repair protein mutS; &CP000... 196 6e-48
CP001408_2699(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 196 6e-48
CP000572_2580(CP000572|pid:none) Burkholderia pseudomallei 1106a... 196 6e-48
(Q3BVY0) RecName: Full=DNA mismatch repair protein mutS; &AM039... 196 6e-48
(A1UU95) RecName: Full=DNA mismatch repair protein mutS; &CP000... 196 6e-48
(A3NWZ4) RecName: Full=DNA mismatch repair protein mutS; 196 6e-48
(Q5H2C5) RecName: Full=DNA mismatch repair protein mutS; &AE013... 196 6e-48
(Q5F5J4) RecName: Full=DNA mismatch repair protein mutS; &AE004... 195 7e-48
(Q1QQJ4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 195 7e-48
(Q0BDU3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 195 7e-48
CP001025_1976(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 195 7e-48
(Q55GU9) RecName: Full=DNA mismatch repair protein Msh6; 195 9e-48
(A1V5I2) RecName: Full=DNA mismatch repair protein mutS; &(A2SA... 195 9e-48
CP000526_2129(CP000526|pid:none) Burkholderia mallei SAVP1 chrom... 195 9e-48
(Q63SR9) RecName: Full=DNA mismatch repair protein mutS; &BX571... 195 9e-48
DQ465631_1(DQ465631|pid:none) Neisseria meningitidis strain Z126... 194 1e-47
(Q9JWT7) RecName: Full=DNA mismatch repair protein mutS; &AL157... 194 1e-47
CP000270_2800(CP000270|pid:none) Burkholderia xenovorans LB400 c... 194 1e-47
(Q13X51) RecName: Full=DNA mismatch repair protein mutS; 194 1e-47
(Q64MG7) RecName: Full=DNA mismatch repair protein mutS; &AP006... 194 2e-47
(Q47DJ8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 194 2e-47
(Q5L7B7) RecName: Full=DNA mismatch repair protein mutS; &CR626... 194 2e-47
(Q87CI8) RecName: Full=DNA mismatch repair protein mutS; &AE009... 194 2e-47
CP001011_1116(CP001011|pid:none) Xylella fastidiosa M23, complet... 194 2e-47
(A8I275) RecName: Full=DNA mismatch repair protein mutS; &AP009... 194 2e-47
CP001503_2300(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 193 3e-47
(A2BTM6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 193 4e-47
CP001050_2322(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945... 193 4e-47
(Q2UT70) RecName: Full=DNA mismatch repair protein msh3; AltName... 193 4e-47
(Q8A334) RecName: Full=DNA mismatch repair protein mutS; &AE015... 193 4e-47
CP001392_1064(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 192 5e-47
AP009385_2024(AP009385|pid:none) Burkholderia multivorans ATCC 1... 192 5e-47
AE017321_254(AE017321|pid:none) Wolbachia endosymbiont strain TR... 192 6e-47
CP001131_2141(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 192 8e-47
(P61673) RecName: Full=DNA mismatch repair protein mutS; 192 8e-47
AE017196_167(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 192 8e-47
(Q7W880) RecName: Full=DNA mismatch repair protein mutS; 191 1e-46
AM270298_35(AM270298|pid:none) Aspergillus niger contig An13c004... 191 1e-46
BX640429_310(BX640429|pid:none) Bordetella parapertussis strain ... 191 1e-46
(Q1MRT4) RecName: Full=DNA mismatch repair protein mutS; &AM180... 191 1e-46
(Q39EX8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 191 1e-46
(Q5LWH0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 191 2e-46
(P74926) RecName: Full=DNA mismatch repair protein mutS; &AE000... 191 2e-46
(A4WVX8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 191 2e-46
AY187681_3(AY187681|pid:none) Vibrio vulnificus lipoprotein D (n... 191 2e-46
CP001101_799(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 190 2e-46
(Q89VX1) RecName: Full=DNA mismatch repair protein mutS; &BA000... 190 2e-46
CU459003_3291(CU459003|pid:none) Magnetospirillum gryphiswaldens... 190 2e-46
(A0K8L2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 190 3e-46
(Q2RNG0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 190 3e-46
CP000958_2087(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 190 3e-46
(Q1BHQ1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 190 3e-46
BX640442_21(BX640442|pid:none) Bordetella bronchiseptica strain ... 189 4e-46
(A1BHN5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 189 4e-46
(A6U5G0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 189 5e-46
(Q3AQZ8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 189 5e-46
CP000613_2835(CP000613|pid:none) Rhodospirillum centenum SW, com... 189 5e-46
(P56883) RecName: Full=DNA mismatch repair protein mutS; &AL591... 189 7e-46
AF227730_1(AF227730|pid:none) Sinorhizobium meliloti mismatch re... 189 7e-46
CP001150_2616(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 189 7e-46
(Q1DQ73) RecName: Full=DNA mismatch repair protein MSH3; AltName... 189 7e-46
(Q3IYI5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 189 7e-46
CP000975_109(CP000975|pid:none) Methylacidiphilum infernorum V4,... 189 7e-46
AM999887_388(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 188 9e-46
(A3PNR5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 188 1e-45
(Q11YS6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 187 2e-45
CP000786_813(CP000786|pid:none) Leptospira biflexa serovar Patoc... 187 2e-45
CP000777_788(CP000777|pid:none) Leptospira biflexa serovar Patoc... 187 2e-45
(A6R7S1) RecName: Full=DNA mismatch repair protein MSH3; AltName... 187 2e-45
CP000254_3127(CP000254|pid:none) Methanospirillum hungatei JF-1,... 187 3e-45
CU062463_8(CU062463|pid:none) Onchocerca Wolbachia Sequence Frag... 187 3e-45
(Q9PLD0) RecName: Full=DNA mismatch repair protein mutS; &AE002... 186 3e-45
(Q16D05) RecName: Full=DNA mismatch repair protein mutS; &CP000... 186 3e-45
(Q7MXR7) RecName: Full=DNA mismatch repair protein mutS; &AE015... 186 3e-45
CP001074_420(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 186 3e-45
AP009380_2041(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 186 3e-45
CP000943_6202(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 186 4e-45
(A7HZ64) RecName: Full=DNA mismatch repair protein mutS; &CP000... 186 4e-45
(Q1GCK9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 185 7e-45

>AC116960_5(AC116960|pid:none) Dictyostelium discoideum chromosome 2
map complement(1004496-821614) strain AX4, complete
sequence.
Length = 916

Score = 1044 bits (2700), Expect(2) = 0.0
Identities = 541/601 (90%), Positives = 541/601 (90%)
Frame = +1

Query: 82 MSDNEQEESSQVVLKEDKTFVTFFQSLVSSNEDTDTIRLFDRKGYYSIHGEDAVFVAMMH 261
MSDNEQEESSQVVLKEDKTFVTFFQSLVSSNEDTDTIRLFDRK
Sbjct: 1 MSDNEQEESSQVVLKEDKTFVTFFQSLVSSNEDTDTIRLFDRK----------------- 43

Query: 262 FKSKKSLKYWSISDPNPKKKIKIDNDGSLTTTAXXXXXXXXELGLAVLTIRQGYEFENIV 441
KSLKYWSISDPNPKKKIKIDNDGSLTTTA ELGLAVLTIRQGYEFENIV
Sbjct: 44 ----KSLKYWSISDPNPKKKIKIDNDGSLTTTASSSQQQQQELGLAVLTIRQGYEFENIV 99

Query: 442 XXXXXXXXXXXXWSMKPNSKQQWELIKKGSPGNTQMFEDVLLNGNCEGSVMMALKVTREK 621
WSMKPNSKQQWELIKKGSPGNTQMFEDVLLNGNCEGSVMMALKVTREK
Sbjct: 100 KELLDEKKKIEIWSMKPNSKQQWELIKKGSPGNTQMFEDVLLNGNCEGSVMMALKVTREK 159

Query: 622 GSIVFGISFGDATFKTIGVSQFMDNDNLSNLSSFIMQMSVKECLLCCDQKNYDYQKVKEK 801
GSIVFGISFGDATFKTIGVSQFMDNDNLSNLSSFIMQMSVKECLLCCDQKNYDYQKVKEK
Sbjct: 160 GSIVFGISFGDATFKTIGVSQFMDNDNLSNLSSFIMQMSVKECLLCCDQKNYDYQKVKEK 219

Query: 802 LSDAGIPFTELPKSDFSSKNAEQDLTRLLGSVKNNLPDIEQEHAIQSASCLIKHLDLLSN 981
LSDAGIPFTELPKSDFSSKNAEQDLTRLLGSVKNNLPDIEQEHAIQSASCLIKHLDLLSN
Sbjct: 220 LSDAGIPFTELPKSDFSSKNAEQDLTRLLGSVKNNLPDIEQEHAIQSASCLIKHLDLLSN 279

Query: 982 PNYFGKFKLEKYDLDRYMKLDSSSFKGLHIIDLKDXXXXXXXXXXXXXXXXXXXNKDQSL 1161
PNYFGKFKLEKYDLDRYMKLDSSSFKGLHIIDLKD NKDQSL
Sbjct: 280 PNYFGKFKLEKYDLDRYMKLDSSSFKGLHIIDLKDSSVSAAAGGGGAGGASSSSNKDQSL 339

Query: 1162 YNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIGD 1341
YNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIGD
Sbjct: 340 YNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIGD 399

Query: 1342 LDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQSLNNHSSIHQELIKVNFIESLESIISD 1521
LDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQSLNNHSSIHQELIKVNFIESLESIISD
Sbjct: 400 LDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQSLNNHSSIHQELIKVNFIESLESIISD 459

Query: 1522 FAKFCAMVEKTIDLDLANDKHEYVIRSSFDETLRGIQLKKDQISNKIERFRVDIADDLNL 1701
FAKFCAMVEKTIDLDLANDKHEYVIRSSFDETLRGIQLKKDQISNKIERFRVDIADDLNL
Sbjct: 460 FAKFCAMVEKTIDLDLANDKHEYVIRSSFDETLRGIQLKKDQISNKIERFRVDIADDLNL 519

Query: 1702 DEAKVKLHYSEKDMFLLRISRKDEVAIRDKKKYIVHATAKDGVRFATREIDTLNEAYKKW 1881
DEAKVKLHYSEKDMFLLRISRKDEVAIRDKKKYIVHATAKDGVRFATREIDTLNEAYKKW
Sbjct: 520 DEAKVKLHYSEKDMFLLRISRKDEVAIRDKKKYIVHATAKDGVRFATREIDTLNEAYKKW 579

Query: 1882 S 1884
S
Sbjct: 580 S 580

Score = 89.4 bits (220), Expect(2) = 0.0
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +3

Query: 1896 LIEDLSSLIATLDVFVTLSHVSSIAPIPFIRPEIIPLGSDENGAG 2030
LIEDLSSLIATLDVFVTLSHVSSIAPIPFIRPEIIPLGSDENGAG
Sbjct: 604 LIEDLSSLIATLDVFVTLSHVSSIAPIPFIRPEIIPLGSDENGAG 648

Score = 504 bits (1298), Expect = e-141
Identities = 255/269 (94%), Positives = 255/269 (94%)
Frame = +1

Query: 2029 GTVIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQ 2208
GTVIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQ
Sbjct: 648 GTVIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQ 707

Query: 2209 IGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDEL 2388
IGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDEL
Sbjct: 708 IGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDEL 767

Query: 2389 GRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNT 2568
GRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNT
Sbjct: 768 GRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNT 827

Query: 2569 FTLLYKVEQGPCDQSFGIHVAILANFPSQVIENAKQKAKELESFESNTLKQNHNKFLEEF 2748
FTLLYKVEQGPCDQSFGIHVAILANFPSQVIENAKQKAKELESFESNTLKQNHNKFLEEF
Sbjct: 828 FTLLYKVEQGPCDQSFGIHVAILANFPSQVIENAKQKAKELESFESNTLKQNHNKFLEEF 887

Query: 2749 KEINFNSNDVEXXXXXXXXXXXXXXIDIN 2835
KEINFNSNDVE IDIN
Sbjct: 888 KEINFNSNDVEKSLSLVNSLLNKYSIDIN 916

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 4,118,217,276
Number of extensions: 76563404
Number of successful extensions: 200960
Number of sequences better than 10.0: 1228
Number of HSP's gapped: 199562
Number of HSP's successfully gapped: 1904
Length of query: 1009
Length of database: 1,040,966,779
Length adjustment: 139
Effective length of query: 870
Effective length of database: 595,571,164
Effective search space: 518146912680
Effective search space used: 518146912680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.48 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.20 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U10996-1 is nuc

VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 24
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 8
SF (FL, S) 0
CH (FL, L) 5
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0