Contig-U10979-1 |
Contig ID |
Contig-U10979-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1382 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
4931309 |
End point |
4930036 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
7 |
Number of EST |
9 |
Link to clone list |
U10979 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.22 |
Homology vs DNA |
Query= Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Contig-U10979-1Q.Seq.d (1392 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ433827) Dictyostelium discoideum cDNA clone:ddv23e06, 3' ... 1308 0.0 1 (BJ413834) Dictyostelium discoideum cDNA clone:ddv17j03, 5' ... 1051 0.0 1 (BJ418572) Dictyostelium discoideum cDNA clone:ddv33b07, 5' ... 920 0.0 3 (BJ415590) Dictyostelium discoideum cDNA clone:ddv23e06, 5' ... 862 0.0 3 (BJ327116) Dictyostelium discoideum cDNA clone:dda19p04, 5' ... 773 0.0 3 (BJ423972) Dictyostelium discoideum cDNA clone:ddv51b03, 5' ... 771 0.0 3 (BJ426200) Dictyostelium discoideum cDNA clone:ddv58p05, 5' ... 529 e-171 3 (BJ422893) Dictyostelium discoideum cDNA clone:ddv47k09, 5' ... 371 e-129 3 (BJ344415) Dictyostelium discoideum cDNA clone:dda19p04, 3' ... 113 2e-20 1 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 46 8e-06 10 (FE235222) CAPG3244.rev CAPG Naegleria gruberi amoeba stage ... 52 0.058 1 (CD824711) BN25.058I08F011029 BN25 Brassica napus cDNA clone... 50 0.067 2 (AC034154) Homo sapiens BAC clone RP11-242D9 from 4, complet... 38 0.13 2 (DQ445139) Beta vulgaris chromosome 9 clone BAC132 genomic s... 38 0.15 2 (AC230151) Bos taurus clone CH240-519O14, WORKING DRAFT SEQU... 46 0.19 4 (AC172870) Brassica rapa subsp. pekinensis clone KBrH004A06,... 50 0.23 1 (AC117080) Dictyostelium discoideum chromosome 2 map complem... 50 0.23 1 (AC189620) Brassica rapa subsp. pekinensis clone KBrH117O12,... 50 0.23 1 (DE628104) Bombyx mori genomic DNA, Fosmid clone:GBMFno370_m... 50 0.23 1 (EV102758) 0095081 Brassica napus Leaf library Brassica napu... 50 0.23 1 (EV102599) 0094922 Brassica napus Leaf library Brassica napu... 50 0.23 1 (FK124092) XABT164291.g1 Gateway compatible cien cDNA librar... 50 0.23 1 (FF774740) XABT75715.rev Gateway compatible cien cDNA librar... 50 0.23 1 (FF756353) XABT63353.rev Gateway compatible cien cDNA librar... 50 0.23 1 (EX125613) BR109443 etiolated mature leaf cDNA library KHLW ... 50 0.23 1 (AC023087) Homo sapiens chromosome 12 clone RP11-558D8 map 1... 40 0.26 6 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.28 8 (DX542586) GH_MBb0048C12f GH_MBb Gossypium hirsutum genomic ... 42 0.37 2 (CU695212) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.50 2 (Z97348) Plasmodium falciparum MAL3P1. 38 0.67 5 (AM440723) Vitis vinifera contig VV78X053436.9, whole genome... 48 0.90 1 (AC214277) Populus trichocarpa clone ACSB1145-L17, complete ... 48 0.90 1 (L15420) Dictyostelium discoideum protein tyrosine phosphata... 48 0.90 1 (AC192613) Trichinella spiralis BAC clone TS195-33H12 from c... 48 0.90 1 (AC114741) Homo sapiens BAC clone RP11-62N21 from 4, complet... 48 0.90 1 (AC021429) Homo sapiens chromosome 4 clone RP11-471K8 map 4,... 48 0.90 1 (DE596709) Bombyx mori genomic DNA, Fosmid clone:GBMFno253_k... 48 0.90 1 (DE571645) Bombyx mori genomic DNA, Fosmid clone:GBMFno217_b... 48 0.90 1 (DE563177) Bombyx mori genomic DNA, Fosmid clone:GBMFno204_o... 48 0.90 1 (DE531308) Bombyx mori genomic DNA, Fosmid clone:GBMFno155_b... 48 0.90 1 (DE486295) Bombyx mori genomic DNA, Fosmid clone:GBMFno92_d0... 48 0.90 1 (DE452764) Bombyx mori genomic DNA, Fosmid clone:GBMFno45_p2... 48 0.90 1 (DE440971) Bombyx mori genomic DNA, Fosmid clone:GBMFno29_k0... 48 0.90 1 (DE434082) Bombyx mori genomic DNA, Fosmid clone:GBMFno19_p2... 48 0.90 1 (DE352398) Bombyx mori genomic DNA, BAC clone:BET_070_E01. 48 0.90 1 (DE350869) Bombyx mori genomic DNA, BAC clone:BET_065_J10. 48 0.90 1 (DE346142) Bombyx mori genomic DNA, BAC clone:BET_051_B13. 48 0.90 1 (DE345952) Bombyx mori genomic DNA, BAC clone:BET_050_I24. 48 0.90 1 (DE341159) Bombyx mori genomic DNA, BAC clone:BET_036_B11. 48 0.90 1 (DE335387) Bombyx mori genomic DNA, BAC clone:BET_018_G22. 48 0.90 1 (DE334802) Bombyx mori genomic DNA, BAC clone:BET_016_H02. 48 0.90 1 (DE313054) Bombyx mori genomic DNA, BAC clone:BES_095_B23. 48 0.90 1 (DE302327) Bombyx mori genomic DNA, BAC clone:BES_060_K05. 48 0.90 1 (DE174876) Bombyx mori genomic DNA, Fosmid clone:RO0325-H13_F. 48 0.90 1 (DE164706) Bombyx mori genomic DNA, Fosmid clone:RO0311-A22_F. 48 0.90 1 (AG773584) Macaca fuscata fuscata DNA, clone: MSB2-250D06_R,... 48 0.90 1 (CC224105) CH261-114I14_Sp6.1 CH261 Gallus gallus genomic cl... 48 0.90 1 (BZ445159) BONCB61TR BO_1.6_2_KB_tot Brassica oleracea genom... 48 0.90 1 (BZ060202) lle74g07.b1 B.oleracea002 Brassica oleracea genom... 48 0.90 1 (CV756995) sjl7-006_B04_sjl7-006B04-T7_031.ab1 SJL Schistoso... 48 0.90 1 (FF715353) XABT34393.rev Gateway compatible cien cDNA librar... 48 0.90 1 (U06920) Drosophila melanogaster HeT-A non-LTR retrotranspos... 44 0.94 3 (CR848791) Zebrafish DNA sequence from clone CH211-217N8 in ... 36 2.1 5 (AC192792) Gallus gallus BAC clone CH261-4K19 from chromosom... 40 2.2 6 (CR848713) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.5 5 (CU041342) Zebrafish DNA sequence from clone CH211-218P16 in... 36 2.6 4 (DH196118) Oryzias latipes Fosmid clone:GOLWFno484_d01, reve... 32 2.7 3 (AC183588) Canis familiaris chromosome 9, clone XX-11G10, co... 38 3.1 5 (AL844509) Plasmodium falciparum chromosome 13. 40 3.2 3 (CR383669) Zebrafish DNA sequence from clone DKEY-25O1 in li... 46 3.6 1 (AL732508) Mouse DNA sequence from clone RP23-270A11 on chro... 46 3.6 1 (AC122830) Mus musculus BAC clone RP23-224I23 from 8, comple... 46 3.6 1 (AC117185) Mus musculus BAC clone RP23-37M7 from 8, complete... 46 3.6 1 (EU643487) Adineta vaga clone 136D10 retrotransposons Athena... 46 3.6 1 (EF104907) Fergusonina turneri 28S ribosomal RNA gene, parti... 46 3.6 1 (CR382399) Plasmodium falciparum chromosome 6, complete sequ... 46 3.6 1 (AK113972) Ciona intestinalis cDNA, clone:cicl019j15, full i... 46 3.6 1 (AF345571) Fergusonina sp. FD-2001 28S ribosomal RNA gene, p... 46 3.6 1 (AF345570) Fergusonina sp. FD-2001 28S ribosomal RNA gene, p... 46 3.6 1 (AF345569) Fergusonina sp. FD-2001 28S ribosomal RNA gene, p... 46 3.6 1 (AE014297) Drosophila melanogaster chromosome 3R, complete s... 46 3.6 1 (AE001572) Drosophila melanogaster Antennapedia complex (ANT... 46 3.6 1 (AC095014) Drosophila melanogaster, chromosome 3R, region 83... 46 3.6 1 (AC095013) Drosophila melanogaster, chromosome 3R, region 83... 46 3.6 1 (AC001652) Drosophila melanogaster DNA sequence (P1 DS00004 ... 46 3.6 1 (AL121898) Human DNA sequence from clone RP11-430K20 on chro... 46 3.6 1 (AC123559) Rattus norvegicus clone CH230-363B24, *** SEQUENC... 46 3.6 1 (AC120663) Rattus norvegicus clone CH230-35A10, WORKING DRAF... 46 3.6 1 (CR762403) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.6 1 (AC230149) Bos taurus clone CH240-519N16, WORKING DRAFT SEQU... 46 3.6 1 (AC208259) Saimiri boliviensis boliviensis clone CH254-118C7... 46 3.6 1 (AC182910) Bos taurus clone CH240-308K10, WORKING DRAFT SEQU... 46 3.6 1 (AC172898) Bos taurus clone CH240-528B6, WORKING DRAFT SEQUE... 46 3.6 1 (AC172886) Brassica rapa subsp. pekinensis clone KBrS002B15,... 46 3.6 1 (AC020259) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 3.6 1 (FH361343) CHO_OF4276xn07f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.6 1 (ED800158) MG__Ba0075M13r MG__Ba Mimulus guttatus genomic, g... 46 3.6 1 (ED711934) GM_WBb0059I18.r GM_WBb Glycine max genomic clone ... 46 3.6 1 (DX155590) OR_ABa0008B12.f OR_ABa Oryza ridleyi genomic clon... 46 3.6 1 (DH003665) Oryzias latipes Fosmid clone:GOLWFno83_e06, forwa... 46 3.6 1
>(BJ433827) Dictyostelium discoideum cDNA clone:ddv23e06, 3' end, single read. Length = 673
Score = 1308 bits (660), Expect = 0.0 Identities = 672/672 (100%) Strand = Plus / Minus
Query: 585 ttggatattgtaccattcgatgaggatgtgctctctttagagttggcatcatcctatagg 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 ttggatattgtaccattcgatgaggatgtgctctctttagagttggcatcatcctatagg 614
Query: 645 gagtatttattagatggtgatagaacttcgttatttcatgtagctaaatcattgatgaag 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 613 gagtatttattagatggtgatagaacttcgttatttcatgtagctaaatcattgatgaag 554
Query: 705 ttacaagctatgtttggcaccattccgatagttaagggtaaaggtcactgttcgcgtcta 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 ttacaagctatgtttggcaccattccgatagttaagggtaaaggtcactgttcgcgtcta 494
Query: 765 gtcatggatatgattgtgcgtatgagaaaggaaatgggtgaagagtgtacagtgccacca 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 gtcatggatatgattgtgcgtatgagaaaggaaatgggtgaagagtgtacagtgccacca 434
Query: 825 gagatcgattcattgattctcttggacagagatatcgataccattacaccaatgtgtact 884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 gagatcgattcattgattctcttggacagagatatcgataccattacaccaatgtgtact 374
Query: 885 caattaacttatgaagatttaaatgaacaatcaccaaatgatatagcttatacgtatagt 944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 caattaacttatgaagatttaaatgaacaatcaccaaatgatatagcttatacgtatagt 314
Query: 945 ggttatgctccattatcagttagattggttcaatcagcaattaaaccaaatgggtggaga 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 ggttatgctccattatcagttagattggttcaatcagcaattaaaccaaatgggtggaga 254
Query: 1005 caaatcgatgatatcttaaaacaattacctggcccaacctttgaagagattcaaccactt 1064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 caaatcgatgatatcttaaaacaattacctggcccaacctttgaagagattcaaccactt 194
Query: 1065 ccacaaggtgcaactacaaatgtaaaaagtgatcgtaaaccaattacattggtttacttt 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 ccacaaggtgcaactacaaatgtaaaaagtgatcgtaaaccaattacattggtttacttt 134
Query: 1125 attggtggtgttactttctctgaaatttctgcacttcgtttcctctcaagacaagatcaa 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 attggtggtgttactttctctgaaatttctgcacttcgtttcctctcaagacaagatcaa 74
Query: 1185 gctaatcgtnatttcatcattttaacaacaaaacttataaaggtaatacaanatnataat 1244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 gctaatcgtnatttcatcattttaacaacaaaacttataaaggtaatacaanatnataat 14
Query: 1245 ttaatnaagttt 1256 |||||||||||| Sbjct: 13 ttaatnaagttt 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,415,606,569 Number of extensions: 92206403 Number of successful extensions: 11234586 Number of sequences better than 10.0: 160 Length of query: 1392 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1368 Effective length of database: 97,308,875,965 Effective search space: 133118542320120 Effective search space used: 133118542320120 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.28 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
4 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |