Contig-U10979-1
Contig ID Contig-U10979-1
Contig update 2002.12.18
Contig sequence
>Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Contig-U10979-1Q.Seq.d
ATTTTTTTTCAATTTATTTTATTTTGATTTAAATAAATAAATATAAATAA
AAAAAAAAGATGTTTAAAAAACCAGCATCACAAGCACCTGGTGGTAAACC
AGCGGCTCAACAACAACAACAAGCAAAACAACAACAACAACCACAACCAT
TAAAACCAATAGTATTATCACAAATTCCAAATATTTCAAGTAAAGTTTTA
AATTTAACATCGATTAGAGATCAAAGTAAATTAGAGTTAGGTGCAGCAAT
TAGTACACTCAAAGGTTCAAAAGCATTAGTTATGGATCCAAAATTAATTG
GTTTATTAAATTTATTAGCTGATCCAACATTTTTATCTAATTGTGGAGCA
GATAGAAGATATGAATTAAAACCAGAGATTAATACAGATAGTAAGAATAT
AGTTTATATAGTTAGACCAGAAGTTAAATATATGCATTGGATAACTGAAC
ATGTTAAACAACATGCAGAGAAAGGGTTAAAGAAAGAGTATTCAATTGTA
TTTGTACCAAGAGCAACCATTTTATGTCAACGTGTTTTAGAGGAACAGGG
TGTGATGGGTAATTTTGTAATTAGTGATTTCCCATTGGATATTGTACCAT
TCGATGAGGATGTGCTCTCTTTAGAGTTGGCATCATCCTATAGGGAGTAT
TTATTAGATGGTGATAGAACTTCGTTATTTCATGTAGCTAAATCATTGAT
GAAGTTACAAGCTATGTTTGGCACCATTCCGATAGTTAAGGGTAAAGGTC
ACTGTTCGCGTCTAGTCATGGATATGATTGTGCGTATGAGAAAGGAAATG
GGTGAAGAGTGTACAGTGCCACCAGAGATCGATTCATTGATTCTCTTGGA
CAGAGATATCGATACCATTACACCAATGTGTACTCAATTAACTTATGAAG
ATTTAAATGAACAATCACCAAATGATATAGCTTATACGTATAGTGGTTAT
GCTCCATTATCAGTTAGATTGGTTCAATCAGCAATTAAACCAAATGGGTG
GAGACAAATCGATGATATCTTAAAACAATTACCTGGCCCAACCTTTGAAG
AGATTCAACCACTTCCACAAGGTGCAACTACAAATGTAAAAAGTGATCGT
AAACCAATTACATTGGTTTACTTTATTGGTGGTGTTACTTTCTCTGAAAT
TTCTGCACTTCGTTTCCTCTCAAGACAAGATCAAGCTAATCGTNATTTCA
TCATTTTAACAACAAAACTTATAAAGGTAATACAANATNATAATTTAATN
AAGTTT----------AAACCTATGGTTGNAGNNAAANTTTCACTCNCCC
CAATTTGGANAAATTAGNANTNATTTGTAAAACANATTTGNAACNTANAN
TCCCANCNATTCGNAAAAANNTTNATTTAANCANTGNGGATT

Gap gap included
Contig length 1382
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4931309
End point 4930036
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 9
Link to clone list U10979
List of clone(s)

est1=AFJ416F,1,537
est2=VHI138F,1,346
est3=VHK309F,4,539
est4=VFL219F,6,582
est5=VHB325F,16,611
est6=VHN724F,18,414
est7=VFI313F,373,978
est8=VFL219Z,585,1257
est9=AFJ416Z,1258,1384
Translated Amino Acid sequence
ffsiyfili*inkyk*KKKMFKKPASQAPGGKPAAQQQQQAKQQQQPQPLKPIVLSQIPN
ISSKVLNLTSIRDQSKLELGAAISTLKGSKALVMDPKLIGLLNLLADPTFLSNCGADRRY
ELKPEINTDSKNIVYIVRPEVKYMHWITEHVKQHAEKGLKKEYSIVFVPRATILCQRVLE
EQGVMGNFVISDFPLDIVPFDEDVLSLELASSYREYLLDGDRTSLFHVAKSLMKLQAMFG
TIPIVKGKGHCSRLVMDMIVRMRKEMGEECTVPPEIDSLILLDRDIDTITPMCTQLTYED
LNEQSPNDIAYTYSGYAPLSVRLVQSAIKPNGWRQIDDILKQLPGPTFEEIQPLPQGATT
NVKSDRKPITLVYFIGGVTFSEISALRFLSRQDQANRXFIILTTKLIKVIQXXNLXKF--
-

---TYGXXXXFTXPNLXKLXXICKTXLXXXXPXIRKXXXLXXXD


Translated Amino Acid sequence (All Frames)
Frame A:
iffqfilf*fk*ininkkkrclknqhhkhlvvnqrlnnnnkqnnnnnhnh*nq*yyhkfq
ifqvkf*i*hrleikvn*s*vqqlvhskvqkh*lwiqn*lvy*iy*liqhfyliveqied
mn*nqrliqivri*fi*ldqklnicig*lnmlnnmqrkg*rksiqlylyqeqpfyvnvf*
rnrv*wvil*lvishwilyhsmrmcsl*swhhpigsiy*mvielryfm*lnh**syklcl
apfr*lrvkvtvrv*swi*lcv*erkwvksvqchqrsih*fswteisiplhqcvln*lmk
i*mnnhqmi*lirivvmlhyqldwfnqqlnqmggdksmis*nnylaqplkrfnhfhkvql
qm*kvivnqlhwftllvvllslkflhfvssqdkiklivissf*qqnl*r*yxxii*xs--
-

---kpmvxxkxslxpiwxn*xxfvkxixnxxsxxfxkxxi*xxxi

Frame B:
fffnlfyfdlnk*i*ikkkdv*ktsitstww*tsgsttttsktttttttiktnsiitnsk
yfk*sfkfnid*rsk*irvrcsn*ytqrfksisygskinwfikfis*snifi*lwsr*ki
*iktrd*yr**eyslys*trs*iyaldn*tc*ttcrervkervfncictksnhfmstcfr
gtgcdg*fcn**fpigyctir*gcalfrvgiil*gvfirw**nfviscs*iidevtsyvw
hhsds*g*rslfasshgydcayekgng*rvysatrdrfidslgqryryhytnvysinl*r
fk*titk*yslyv*wlcsiis*igsisn*tkwvetnr*ylktitwpnl*rdsttstrcny
kckk*s*tnyigllywwcyfl*nfctsfplktrss*sxfhhfnnktykgntxx*fnxv--
-

---nlwlxxxfhspqfgxixxxl*nxfxtxxpxxsxkxxfxxxg

Frame C:
ffsiyfili*inkyk*KKKMFKKPASQAPGGKPAAQQQQQAKQQQQPQPLKPIVLSQIPN
ISSKVLNLTSIRDQSKLELGAAISTLKGSKALVMDPKLIGLLNLLADPTFLSNCGADRRY
ELKPEINTDSKNIVYIVRPEVKYMHWITEHVKQHAEKGLKKEYSIVFVPRATILCQRVLE
EQGVMGNFVISDFPLDIVPFDEDVLSLELASSYREYLLDGDRTSLFHVAKSLMKLQAMFG
TIPIVKGKGHCSRLVMDMIVRMRKEMGEECTVPPEIDSLILLDRDIDTITPMCTQLTYED
LNEQSPNDIAYTYSGYAPLSVRLVQSAIKPNGWRQIDDILKQLPGPTFEEIQPLPQGATT
NVKSDRKPITLVYFIGGVTFSEISALRFLSRQDQANRXFIILTTKLIKVIQXXNLXKF--
-

---TYGXXXXFTXPNLXKLXXICKTXLXXXXPXIRKXXXLXXXD

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10979-1 (Contig-U10979-1Q)
/CSM_Contig/Contig-U10979-1Q.Seq.d
(1392 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Conti... 2248 0.0
Contig-U04631-1 (Contig-U04631-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U14902-1 (Contig-U14902-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U14767-1 (Contig-U14767-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U14665-1 (Contig-U14665-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U14613-1 (Contig-U14613-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U14547-1 (Contig-U14547-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U13944-1 (Contig-U13944-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U11912-1 (Contig-U11912-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U11865-1 (Contig-U11865-1Q) /CSM_Contig/Conti... 38 0.025

>Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Contig-U10979-1Q.Seq.d
Length = 1392

Score = 2248 bits (1134), Expect = 0.0
Identities = 1245/1245 (100%)
Strand = Plus / Plus


Query: 148 cattaaaaccaatagtattatcacaaattccaaatatttcaagtaaagttttaaatttaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cattaaaaccaatagtattatcacaaattccaaatatttcaagtaaagttttaaatttaa 207


Query: 208 catcgattagagatcaaagtaaattagagttaggtgcagcaattagtacactcaaaggtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 catcgattagagatcaaagtaaattagagttaggtgcagcaattagtacactcaaaggtt 267


Query: 268 caaaagcattagttatggatccaaaattaattggtttattaaatttattagctgatccaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caaaagcattagttatggatccaaaattaattggtttattaaatttattagctgatccaa 327


Query: 328 catttttatctaattgtggagcagatagaagatatgaattaaaaccagagattaatacag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catttttatctaattgtggagcagatagaagatatgaattaaaaccagagattaatacag 387


Query: 388 atagtaagaatatagtttatatagttagaccagaagttaaatatatgcattggataactg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atagtaagaatatagtttatatagttagaccagaagttaaatatatgcattggataactg 447


Query: 448 aacatgttaaacaacatgcagagaaagggttaaagaaagagtattcaattgtatttgtac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aacatgttaaacaacatgcagagaaagggttaaagaaagagtattcaattgtatttgtac 507


Query: 508 caagagcaaccattttatgtcaacgtgttttagaggaacagggtgtgatgggtaattttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caagagcaaccattttatgtcaacgtgttttagaggaacagggtgtgatgggtaattttg 567


Query: 568 taattagtgatttcccattggatattgtaccattcgatgaggatgtgctctctttagagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 taattagtgatttcccattggatattgtaccattcgatgaggatgtgctctctttagagt 627


Query: 628 tggcatcatcctatagggagtatttattagatggtgatagaacttcgttatttcatgtag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tggcatcatcctatagggagtatttattagatggtgatagaacttcgttatttcatgtag 687


Query: 688 ctaaatcattgatgaagttacaagctatgtttggcaccattccgatagttaagggtaaag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctaaatcattgatgaagttacaagctatgtttggcaccattccgatagttaagggtaaag 747


Query: 748 gtcactgttcgcgtctagtcatggatatgattgtgcgtatgagaaaggaaatgggtgaag 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtcactgttcgcgtctagtcatggatatgattgtgcgtatgagaaaggaaatgggtgaag 807


Query: 808 agtgtacagtgccaccagagatcgattcattgattctcttggacagagatatcgatacca 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 agtgtacagtgccaccagagatcgattcattgattctcttggacagagatatcgatacca 867


Query: 868 ttacaccaatgtgtactcaattaacttatgaagatttaaatgaacaatcaccaaatgata 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttacaccaatgtgtactcaattaacttatgaagatttaaatgaacaatcaccaaatgata 927


Query: 928 tagcttatacgtatagtggttatgctccattatcagttagattggttcaatcagcaatta 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tagcttatacgtatagtggttatgctccattatcagttagattggttcaatcagcaatta 987


Query: 988 aaccaaatgggtggagacaaatcgatgatatcttaaaacaattacctggcccaacctttg 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 aaccaaatgggtggagacaaatcgatgatatcttaaaacaattacctggcccaacctttg 1047


Query: 1048 aagagattcaaccacttccacaaggtgcaactacaaatgtaaaaagtgatcgtaaaccaa 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 aagagattcaaccacttccacaaggtgcaactacaaatgtaaaaagtgatcgtaaaccaa 1107


Query: 1108 ttacattggtttactttattggtggtgttactttctctgaaatttctgcacttcgtttcc 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 ttacattggtttactttattggtggtgttactttctctgaaatttctgcacttcgtttcc 1167


Query: 1168 tctcaagacaagatcaagctaatcgtnatttcatcattttaacaacaaaacttataaagg 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 tctcaagacaagatcaagctaatcgtnatttcatcattttaacaacaaaacttataaagg 1227


Query: 1228 taatacaanatnataatttaatnaagtttnnnnnnnnnnaaacctatggttgnagnnaaa 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1228 taatacaanatnataatttaatnaagtttnnnnnnnnnnaaacctatggttgnagnnaaa 1287


Query: 1288 ntttcactcnccccaatttgganaaattagnantnatttgtaaaacanatttgnaacnta 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1288 ntttcactcnccccaatttgganaaattagnantnatttgtaaaacanatttgnaacnta 1347


Query: 1348 nantcccancnattcgnaaaaannttnatttaancantgnggatt 1392
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1348 nantcccancnattcgnaaaaannttnatttaancantgnggatt 1392


Score = 153 bits (77), Expect = 6e-37
Identities = 97/107 (90%)
Strand = Plus / Plus


Query: 1 attttttttcaatttattttattttgatttaaataaataaatataaatnnnnnnnnnnga 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 attttttttcaatttattttattttgatttaaataaataaatataaataaaaaaaaaaga 60


Query: 61 tgtttaaaaaaccagcatcacaagcacctggtggtaaaccagcggct 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtttaaaaaaccagcatcacaagcacctggtggtaaaccagcggct 107


>Contig-U04631-1 (Contig-U04631-1Q) /CSM_Contig/Contig-U04631-1Q.Seq.d
Length = 468

Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Minus


Query: 2 ttttttttcaatttattttatttt 25
|||||||| |||||||||||||||
Sbjct: 326 tttttttttaatttattttatttt 303


>Contig-U14902-1 (Contig-U14902-1Q) /CSM_Contig/Contig-U14902-1Q.Seq.d
Length = 756

Score = 38.2 bits (19), Expect = 0.025
Identities = 28/31 (90%)
Strand = Plus / Minus


Query: 1 attttttttcaatttattttattttgattta 31
||||||||| | ||||||||||||| |||||
Sbjct: 73 atttttttttattttattttattttaattta 43


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 11 aatttattttatttt 25
|||||||||||||||
Sbjct: 38 aatttattttatttt 24


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,335
Number of Sequences: 6905
Number of extensions: 23335
Number of successful extensions: 5644
Number of sequences better than 10.0: 598
length of query: 1392
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1376
effective length of database: 5,564,391
effective search space: 7656602016
effective search space used: 7656602016
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Contig-U10979-1Q.Seq.d
(1392 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433827) Dictyostelium discoideum cDNA clone:ddv23e06, 3' ... 1308 0.0 1
(BJ413834) Dictyostelium discoideum cDNA clone:ddv17j03, 5' ... 1051 0.0 1
(BJ418572) Dictyostelium discoideum cDNA clone:ddv33b07, 5' ... 920 0.0 3
(BJ415590) Dictyostelium discoideum cDNA clone:ddv23e06, 5' ... 862 0.0 3
(BJ327116) Dictyostelium discoideum cDNA clone:dda19p04, 5' ... 773 0.0 3
(BJ423972) Dictyostelium discoideum cDNA clone:ddv51b03, 5' ... 771 0.0 3
(BJ426200) Dictyostelium discoideum cDNA clone:ddv58p05, 5' ... 529 e-171 3
(BJ422893) Dictyostelium discoideum cDNA clone:ddv47k09, 5' ... 371 e-129 3
(BJ344415) Dictyostelium discoideum cDNA clone:dda19p04, 3' ... 113 2e-20 1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 46 8e-06 10
(FE235222) CAPG3244.rev CAPG Naegleria gruberi amoeba stage ... 52 0.058 1
(CD824711) BN25.058I08F011029 BN25 Brassica napus cDNA clone... 50 0.067 2
(AC034154) Homo sapiens BAC clone RP11-242D9 from 4, complet... 38 0.13 2
(DQ445139) Beta vulgaris chromosome 9 clone BAC132 genomic s... 38 0.15 2
(AC230151) Bos taurus clone CH240-519O14, WORKING DRAFT SEQU... 46 0.19 4
(AC172870) Brassica rapa subsp. pekinensis clone KBrH004A06,... 50 0.23 1
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 50 0.23 1
(AC189620) Brassica rapa subsp. pekinensis clone KBrH117O12,... 50 0.23 1
(DE628104) Bombyx mori genomic DNA, Fosmid clone:GBMFno370_m... 50 0.23 1
(EV102758) 0095081 Brassica napus Leaf library Brassica napu... 50 0.23 1
(EV102599) 0094922 Brassica napus Leaf library Brassica napu... 50 0.23 1
(FK124092) XABT164291.g1 Gateway compatible cien cDNA librar... 50 0.23 1
(FF774740) XABT75715.rev Gateway compatible cien cDNA librar... 50 0.23 1
(FF756353) XABT63353.rev Gateway compatible cien cDNA librar... 50 0.23 1
(EX125613) BR109443 etiolated mature leaf cDNA library KHLW ... 50 0.23 1
(AC023087) Homo sapiens chromosome 12 clone RP11-558D8 map 1... 40 0.26 6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.28 8
(DX542586) GH_MBb0048C12f GH_MBb Gossypium hirsutum genomic ... 42 0.37 2
(CU695212) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.50 2
(Z97348) Plasmodium falciparum MAL3P1. 38 0.67 5
(AM440723) Vitis vinifera contig VV78X053436.9, whole genome... 48 0.90 1
(AC214277) Populus trichocarpa clone ACSB1145-L17, complete ... 48 0.90 1
(L15420) Dictyostelium discoideum protein tyrosine phosphata... 48 0.90 1
(AC192613) Trichinella spiralis BAC clone TS195-33H12 from c... 48 0.90 1
(AC114741) Homo sapiens BAC clone RP11-62N21 from 4, complet... 48 0.90 1
(AC021429) Homo sapiens chromosome 4 clone RP11-471K8 map 4,... 48 0.90 1
(DE596709) Bombyx mori genomic DNA, Fosmid clone:GBMFno253_k... 48 0.90 1
(DE571645) Bombyx mori genomic DNA, Fosmid clone:GBMFno217_b... 48 0.90 1
(DE563177) Bombyx mori genomic DNA, Fosmid clone:GBMFno204_o... 48 0.90 1
(DE531308) Bombyx mori genomic DNA, Fosmid clone:GBMFno155_b... 48 0.90 1
(DE486295) Bombyx mori genomic DNA, Fosmid clone:GBMFno92_d0... 48 0.90 1
(DE452764) Bombyx mori genomic DNA, Fosmid clone:GBMFno45_p2... 48 0.90 1
(DE440971) Bombyx mori genomic DNA, Fosmid clone:GBMFno29_k0... 48 0.90 1
(DE434082) Bombyx mori genomic DNA, Fosmid clone:GBMFno19_p2... 48 0.90 1
(DE352398) Bombyx mori genomic DNA, BAC clone:BET_070_E01. 48 0.90 1
(DE350869) Bombyx mori genomic DNA, BAC clone:BET_065_J10. 48 0.90 1
(DE346142) Bombyx mori genomic DNA, BAC clone:BET_051_B13. 48 0.90 1
(DE345952) Bombyx mori genomic DNA, BAC clone:BET_050_I24. 48 0.90 1
(DE341159) Bombyx mori genomic DNA, BAC clone:BET_036_B11. 48 0.90 1
(DE335387) Bombyx mori genomic DNA, BAC clone:BET_018_G22. 48 0.90 1
(DE334802) Bombyx mori genomic DNA, BAC clone:BET_016_H02. 48 0.90 1
(DE313054) Bombyx mori genomic DNA, BAC clone:BES_095_B23. 48 0.90 1
(DE302327) Bombyx mori genomic DNA, BAC clone:BES_060_K05. 48 0.90 1
(DE174876) Bombyx mori genomic DNA, Fosmid clone:RO0325-H13_F. 48 0.90 1
(DE164706) Bombyx mori genomic DNA, Fosmid clone:RO0311-A22_F. 48 0.90 1
(AG773584) Macaca fuscata fuscata DNA, clone: MSB2-250D06_R,... 48 0.90 1
(CC224105) CH261-114I14_Sp6.1 CH261 Gallus gallus genomic cl... 48 0.90 1
(BZ445159) BONCB61TR BO_1.6_2_KB_tot Brassica oleracea genom... 48 0.90 1
(BZ060202) lle74g07.b1 B.oleracea002 Brassica oleracea genom... 48 0.90 1
(CV756995) sjl7-006_B04_sjl7-006B04-T7_031.ab1 SJL Schistoso... 48 0.90 1
(FF715353) XABT34393.rev Gateway compatible cien cDNA librar... 48 0.90 1
(U06920) Drosophila melanogaster HeT-A non-LTR retrotranspos... 44 0.94 3
(CR848791) Zebrafish DNA sequence from clone CH211-217N8 in ... 36 2.1 5
(AC192792) Gallus gallus BAC clone CH261-4K19 from chromosom... 40 2.2 6
(CR848713) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.5 5
(CU041342) Zebrafish DNA sequence from clone CH211-218P16 in... 36 2.6 4
(DH196118) Oryzias latipes Fosmid clone:GOLWFno484_d01, reve... 32 2.7 3
(AC183588) Canis familiaris chromosome 9, clone XX-11G10, co... 38 3.1 5
(AL844509) Plasmodium falciparum chromosome 13. 40 3.2 3
(CR383669) Zebrafish DNA sequence from clone DKEY-25O1 in li... 46 3.6 1
(AL732508) Mouse DNA sequence from clone RP23-270A11 on chro... 46 3.6 1
(AC122830) Mus musculus BAC clone RP23-224I23 from 8, comple... 46 3.6 1
(AC117185) Mus musculus BAC clone RP23-37M7 from 8, complete... 46 3.6 1
(EU643487) Adineta vaga clone 136D10 retrotransposons Athena... 46 3.6 1
(EF104907) Fergusonina turneri 28S ribosomal RNA gene, parti... 46 3.6 1
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 46 3.6 1
(AK113972) Ciona intestinalis cDNA, clone:cicl019j15, full i... 46 3.6 1
(AF345571) Fergusonina sp. FD-2001 28S ribosomal RNA gene, p... 46 3.6 1
(AF345570) Fergusonina sp. FD-2001 28S ribosomal RNA gene, p... 46 3.6 1
(AF345569) Fergusonina sp. FD-2001 28S ribosomal RNA gene, p... 46 3.6 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 46 3.6 1
(AE001572) Drosophila melanogaster Antennapedia complex (ANT... 46 3.6 1
(AC095014) Drosophila melanogaster, chromosome 3R, region 83... 46 3.6 1
(AC095013) Drosophila melanogaster, chromosome 3R, region 83... 46 3.6 1
(AC001652) Drosophila melanogaster DNA sequence (P1 DS00004 ... 46 3.6 1
(AL121898) Human DNA sequence from clone RP11-430K20 on chro... 46 3.6 1
(AC123559) Rattus norvegicus clone CH230-363B24, *** SEQUENC... 46 3.6 1
(AC120663) Rattus norvegicus clone CH230-35A10, WORKING DRAF... 46 3.6 1
(CR762403) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.6 1
(AC230149) Bos taurus clone CH240-519N16, WORKING DRAFT SEQU... 46 3.6 1
(AC208259) Saimiri boliviensis boliviensis clone CH254-118C7... 46 3.6 1
(AC182910) Bos taurus clone CH240-308K10, WORKING DRAFT SEQU... 46 3.6 1
(AC172898) Bos taurus clone CH240-528B6, WORKING DRAFT SEQUE... 46 3.6 1
(AC172886) Brassica rapa subsp. pekinensis clone KBrS002B15,... 46 3.6 1
(AC020259) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 3.6 1
(FH361343) CHO_OF4276xn07f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.6 1
(ED800158) MG__Ba0075M13r MG__Ba Mimulus guttatus genomic, g... 46 3.6 1
(ED711934) GM_WBb0059I18.r GM_WBb Glycine max genomic clone ... 46 3.6 1
(DX155590) OR_ABa0008B12.f OR_ABa Oryza ridleyi genomic clon... 46 3.6 1
(DH003665) Oryzias latipes Fosmid clone:GOLWFno83_e06, forwa... 46 3.6 1

>(BJ433827) Dictyostelium discoideum cDNA clone:ddv23e06, 3' end,
single read.
Length = 673

Score = 1308 bits (660), Expect = 0.0
Identities = 672/672 (100%)
Strand = Plus / Minus


Query: 585 ttggatattgtaccattcgatgaggatgtgctctctttagagttggcatcatcctatagg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttggatattgtaccattcgatgaggatgtgctctctttagagttggcatcatcctatagg 614


Query: 645 gagtatttattagatggtgatagaacttcgttatttcatgtagctaaatcattgatgaag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gagtatttattagatggtgatagaacttcgttatttcatgtagctaaatcattgatgaag 554


Query: 705 ttacaagctatgtttggcaccattccgatagttaagggtaaaggtcactgttcgcgtcta 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttacaagctatgtttggcaccattccgatagttaagggtaaaggtcactgttcgcgtcta 494


Query: 765 gtcatggatatgattgtgcgtatgagaaaggaaatgggtgaagagtgtacagtgccacca 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtcatggatatgattgtgcgtatgagaaaggaaatgggtgaagagtgtacagtgccacca 434


Query: 825 gagatcgattcattgattctcttggacagagatatcgataccattacaccaatgtgtact 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagatcgattcattgattctcttggacagagatatcgataccattacaccaatgtgtact 374


Query: 885 caattaacttatgaagatttaaatgaacaatcaccaaatgatatagcttatacgtatagt 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caattaacttatgaagatttaaatgaacaatcaccaaatgatatagcttatacgtatagt 314


Query: 945 ggttatgctccattatcagttagattggttcaatcagcaattaaaccaaatgggtggaga 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggttatgctccattatcagttagattggttcaatcagcaattaaaccaaatgggtggaga 254


Query: 1005 caaatcgatgatatcttaaaacaattacctggcccaacctttgaagagattcaaccactt 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caaatcgatgatatcttaaaacaattacctggcccaacctttgaagagattcaaccactt 194


Query: 1065 ccacaaggtgcaactacaaatgtaaaaagtgatcgtaaaccaattacattggtttacttt 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ccacaaggtgcaactacaaatgtaaaaagtgatcgtaaaccaattacattggtttacttt 134


Query: 1125 attggtggtgttactttctctgaaatttctgcacttcgtttcctctcaagacaagatcaa 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 attggtggtgttactttctctgaaatttctgcacttcgtttcctctcaagacaagatcaa 74


Query: 1185 gctaatcgtnatttcatcattttaacaacaaaacttataaaggtaatacaanatnataat 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 gctaatcgtnatttcatcattttaacaacaaaacttataaaggtaatacaanatnataat 14


Query: 1245 ttaatnaagttt 1256
||||||||||||
Sbjct: 13 ttaatnaagttt 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,415,606,569
Number of extensions: 92206403
Number of successful extensions: 11234586
Number of sequences better than 10.0: 160
Length of query: 1392
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1368
Effective length of database: 97,308,875,965
Effective search space: 133118542320120
Effective search space used: 133118542320120
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Contig-U10979-1Q.Seq.d
(1392 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

EU961408_1(EU961408|pid:none) Zea mays clone 235200 vacuolar pro... 184 5e-45
AK067177_1(AK067177|pid:none) Oryza sativa Japonica Group cDNA c... 182 2e-44
(Q94KJ7) RecName: Full=Vacuolar protein sorting-associated prote... 177 1e-42
(Q63615) RecName: Full=Vacuolar protein sorting-associated prote... 173 2e-41
AB271950_1(AB271950|pid:none) Sus scrofa VPS33A mRNA for vacuola... 169 2e-40
BT058867_1(BT058867|pid:none) Salmo salar clone ssal-rgf-509-048... 169 3e-40
BC105478_1(BC105478|pid:none) Bos taurus vacuolar protein sortin... 166 2e-39
CT978957_4(CT978957|pid:none) Zebrafish DNA sequence from clone ... 164 7e-39
BC166051_1(BC166051|pid:none) Xenopus laevis hypothetical protei... 164 9e-39
CR762099_1(CR762099|pid:none) Xenopus tropicalis finished cDNA, ... 162 3e-38
AB168714_1(AB168714|pid:none) Macaca fascicularis testis cDNA cl... 150 1e-34
AB174234_1(AB174234|pid:none) Macaca fascicularis brain cDNA clo... 125 3e-27
(Q9Y1I2) RecName: Full=Vacuolar protein sorting-associated prote... 125 5e-27
CU633901_63(CU633901|pid:none) Podospora anserina genomic DNA ch... 125 5e-27
BC091824_1(BC091824|pid:none) Danio rerio vacuolar protein sorti... 123 1e-26
AM270010_44(AM270010|pid:none) Aspergillus niger contig An02c015... 123 1e-26
AM920427_1222(AM920427|pid:none) Penicillium chrysogenum Wiscons... 122 4e-26
AP007159_206(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 114 6e-24
(Q2HJ18) RecName: Full=Vacuolar protein sorting-associated prote... 113 2e-23
AK027754_1(AK027754|pid:none) Homo sapiens cDNA FLJ14848 fis, cl... 110 9e-23
(Q9H267) RecName: Full=Vacuolar protein sorting-associated prote... 110 9e-23
(Q63616) RecName: Full=Vacuolar protein sorting-associated prote... 110 2e-22
AJ719863_1(AJ719863|pid:none) Gallus gallus mRNA for hypothetica... 109 2e-22
(P59016) RecName: Full=Vacuolar protein sorting-associated prote... 108 5e-22
AC091330_46(AC091330|pid:none) Trypanosoma brucei chromosome 3 c... 103 1e-20
AK300608_1(AK300608|pid:none) Homo sapiens cDNA FLJ56248 complet... 103 1e-20
AL049495_1(AL049495|pid:none) S.pombe chromosome II cosmid c2A9_... 91 1e-16
(Q9P7V6) RecName: Full=Vacuolar protein sorting-associated prote... 91 1e-16
CT005264_227(CT005264|pid:none) Leishmania major strain Friedlin... 89 4e-16
AM494962_176(AM494962|pid:none) Leishmania braziliensis chromoso... 89 4e-16
CP001325_135(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 86 3e-15
FN357526_17(FN357526|pid:none) Schistosoma mansoni genome sequen... 86 4e-15
AY810960_1(AY810960|pid:none) Schistosoma japonicum SJCHGC01581 ... 81 8e-14
CR954212_306(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 75 4e-12
AL844508_350(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 74 2e-11
CR855043_1(CR855043|pid:none) Oryza sativa (indica cultivar-grou... 59 4e-07
AY070542_1(AY070542|pid:none) Drosophila melanogaster LD23683 fu... 55 8e-06
FN357339_3(FN357339|pid:none) Schistosoma mansoni genome sequenc... 49 4e-04
CR382122_134(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 49 4e-04
AF004837_1(AF004837|pid:none) Aspergillus fumigatus putative vac... 46 0.003
(P34260) RecName: Full=Protein slp-1; &M77697_7(M77697|pid:none) 45 0.006
U29488_14(U29488|pid:none) Caenorhabditis elegans cosmid C56C10,... 42 0.053
T15853(T15853)hypothetical protein C56C10.1 - Caenorhabditis ele... 42 0.053
CU928168_611(CU928168|pid:none) Kluyveromyces thermotolerans str... 39 0.45
(P20795) RecName: Full=Vacuolar protein sorting-associated prote... 37 1.7
AB261100_1(AB261100|pid:none) Entamoeba histolytica gene for EhV... 37 1.7
DQ812520_6(DQ812520|pid:none) Spironucleus barkhanus isolate Sp3... 35 4.9
BC124116_1(BC124116|pid:none) Danio rerio zgc:152760, mRNA (cDNA... 35 6.4
FN392322_129(FN392322|pid:none) Pichia pastoris GS115 chromosome... 35 6.4

>EU961408_1(EU961408|pid:none) Zea mays clone 235200 vacuolar
protein-sorting protein 33 mRNA, complete cds.
Length = 601

Score = 184 bits (468), Expect = 5e-45
Identities = 95/252 (37%), Positives = 152/252 (60%), Gaps = 2/252 (0%)
Frame = +3

Query: 165 LSQIPNISSKVLNLTSIRDQSKLELGAAISTLKGSKALVMDPKLIGLLNLLADPTFLSNC 344
++QIPN+ + LNL ++R+QS+ +L + ++G K LV+DPKL G L+L+ + L
Sbjct: 1 MAQIPNLDNAPLNLAALREQSQKDLFGILKNIRGKKCLVIDPKLAGTLSLVVQTSLLKEY 60

Query: 345 GADRRYELKPEINTDSKNIVYIVRPEVKYMHWITEHVKQHAEKGLKKEYSIVFVPRATIL 524
GA+ R + T+ IVY+V ++++M +I +K KGL++EY + FVPR T+
Sbjct: 61 GAEVRILSPEPLQTECPKIVYLVHSQLRFMKFIASQIKNDEPKGLQREYFLYFVPRRTVA 120

Query: 525 CQRVLEEQGVMGNFVISDFPLDIVPFDEDVLSLELASSYREYLLDGDRTSLFHVAKSLMK 704
C+++LEE+ V ++PL +VP D+DVLSLEL S +E L++GD +S++HVAK++ K
Sbjct: 121 CEKILEEEKVHQKLTFGEYPLYLVPLDDDVLSLELDHSLQECLIEGDTSSIWHVAKAIHK 180

Query: 705 LQAMFGTIPIVKGKGHCSRLVMDMIVRMRKE--MGEECTVPPEXXXXXXXXXXXXXXTPM 878
L+ FG IP V+ KG S +++ M+ E + + PE TPM
Sbjct: 181 LEFAFGVIPNVRAKGVASTKAAELLNSMQLEDPVNMDDMGIPEINTVILLDREVDMVTPM 240

Query: 879 CTQLTYEDLNEQ 914
C+QLTYE L ++
Sbjct: 241 CSQLTYEGLLDE 252

Score = 95.5 bits (236), Expect = 4e-18
Identities = 52/121 (42%), Positives = 77/121 (63%), Gaps = 13/121 (10%)
Frame = +3

Query: 900 DLNEQS-PNDIAYTYSGYAPLSVRLVQSAIKPNGWRQIDDILKQLPGPTFE--------- 1049
D+N+ + P DI+Y +SGYAPLS+RLVQ A++ +GWR I+++LK LPGP +
Sbjct: 464 DVNDTANPTDISYIFSGYAPLSIRLVQHAVR-SGWRSIEELLKLLPGPHLDLKRGGLTIN 522

Query: 1050 ---EIQPLPQGATTNVKSDRKPITLVYFIGGVTFSEISALRFLSRQDQANRXFIILTTKL 1220
E+ P + + + + LV FIGGVTF+EI+ALRFLS Q+ F++ TTK+
Sbjct: 523 SSPEVHPGLGAQQSIDRVGHRSLVLVVFIGGVTFAEIAALRFLSAQEGMGYDFLVATTKV 582

Query: 1221 I 1223
+
Sbjct: 583 V 583

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,867,801,908
Number of extensions: 39151816
Number of successful extensions: 78633
Number of sequences better than 10.0: 49
Number of HSP's gapped: 78333
Number of HSP's successfully gapped: 82
Length of query: 464
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 332
Effective length of database: 618,001,159
Effective search space: 205176384788
Effective search space used: 205176384788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.77 gvh: 0.37 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.44 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
24.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for Contig-U10979-1 is mit

VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0