Contig-U10968-1
Contig ID Contig-U10968-1
Contig update 2002.12.18
Contig sequence
>Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Contig-U10968-1Q.Seq.d
CACTGTTGGCCTACTGGGAAAAAATTTTCATTTCCAAATTATTTTTATAT
TATACATAATTTTAATAATAATAATAATAATAATAATAATAAATAAGTTA
TTATTATATATATTTACCCCTATTTATTATTATTATTTTTATTTAAATAA
TAAAAAATTATTCATAAAGTAAAAAAATAAAAAAAATAAAAAAAAATAAA
AAAAAATGAATATTAATATAAAGAAATTAGATGGTACAATTTATAGTATT
GAAGGTGTAACTTTAGAAACTACTGTACCAGAACTTAAAAAATTAATTGA
AGCCAAATCTTCAATTTCAATCCCACTTCAAAGAGTAATTTATAAAGGAA
AAGTATTACGTGATGATAAAACTTTGCAATTTTATAATATTGAAGATGGA
GTTACATTACATTTAGCAGAAAGAGCACCAGAAGCAAATCCATCACAATC
AAATAGTGGAAGTAGTGGTAGTGGCAGTAGTAGTACTGATAGTATTAGTG
GTGGTAGTAATTCACCAATTGATAGTAATAATATATTGAATACAGTGATG
AGATCTATTGGTCAACAACAGATACCATTTGATACACAAATTCGTAACTC
AATTGCAAATATAAATAATCCATCAACAACTTTGATCAATGGGCCCATTC
CACCAGGTAGAGATGGCGAACCATACGATCCACAAAGAGAGCCATCGCAC
GAAAGATTATCAAACTATATTGATTTAACAACACAAGAGATCAATACATT
GATGACACGTATGAATGAATTAAATCAACAATTGAGAAACAATAATCAAA
TCACCGATCCAACTCAAAGACAACAAATTCAAACCGATGCTGGTGCATTG
GGTCAATCATTATCAAGATTATCAACCGCCACCAATTTACTCTCTCAATG
TGTTAATGCTTATCGTCCAACCGACAGAC----------AACTCAACCAC
CATTCACAAGTATAATAAATAATTTACCATCAATTCTTTTGGGATTCCAA
TTAATTGTATCAGGCCAACGTGAACAAGTGCTTCGTGGTCATAGAAATAT
TAGAGATACATTGGTTCAAGAGATTTTATCAGGAAACAGTTCACCAGATA
ATGTAGATACCATTGCCAATAGCTTTAGCAATACCATTAGACAACAAACA
ATGGATACCACATTATCTTTACAATTACAACAAAATATTATCAATAGAAA
CTATCCAGAGATTGCATCGCAAGTCGCTCGTAAATATATCAATCGTTTCT
TTGGTATCTTTTTGGTTTCACCAGATTCAGAGGATTACAATATTCAACAA
GAGATGAGTAGTTTTAGCAATCAATTCGTTAGAGAGTTGGTAGATTCTTT
GGCAACTTGCTTTTCAAATGGTAAAGATGGTGCACTTGAATTTCTAGATT
CATTTGTAAATCAAAAAGTTATAACACAAAGTCCAATGCTTGCACCATTC
TCTAGAATGACAAGTGAATATCTTCGTGATGTTTATGAATCCTCTCCACC
ACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACAACAACAAC
AACAACAAAATAATAACAATAGAAATACTACTACAACAACAACTACCACC
ACAACAACTACACCTTCAAGATCTACATCATCGAATATTATTCCACCAGA
ATGGATGGAAACAATCGAAATTGATGAAGCAAGACAATCATCTGGAACAT
CAAGAACACCAAGTGCAACTTATTTTAAAGGAAAAAAGAAACCTACCACA
AATAATAGTAATAATAATAATAATAACAACAATAACAATAACAATAATAA
TACTAGCGATATCAATAATAATAATAATAACAATAATAATAATAACAACA
ACTCAACCAATTCACCATTCGAAACTGTTTTACAAAATTCTACAGAAGGA
ACTCAAGTAAAATATGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTT
ATCACAAATGTACCAAAACATCCTCAAAAAATAAAAACTTCTCCTCAAAA
ACATGTAAATAATAAATAAAGAAGA

Gap gap included
Contig length 2015
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 24
Number of EST 45
Link to clone list U10968
List of clone(s)

est1=AHE389F,1,499
est2=AHO679F,7,427
est3=AHL609F,14,649
est4=CHH860F,14,208
est5=SHF159F,14,466
est6=AHF660F,15,601
est7=SHF507F,15,602
est8=VHB663F,15,556
est9=AHN458F,19,558
est10=SHD795F,19,600
est11=SHL252F,19,498
est12=VHE125F,19,544
est13=VHE225F,21,250
est14=VHI166F,30,555
est15=VSJ762F,35,360
est16=VSJ762Z,35,337
est17=AHQ293F,47,498
est18=AHA572F,52,658
est19=AHJ409F,58,543
est20=VHI650F,70,656
est21=CHE701F,91,656
est22=SHG671F,164,773
est23=VHB748F,286,929
est24=AFJ279F,564,731
est25=AHA572Z,930,1711
est26=AHE389Z,930,1711
est27=VHI166Z,930,1705
est28=SHD795Z,1251,1927
est29=AHF660Z,1255,1959
est30=VHB748Z,1255,2019
est31=AHL609Z,1258,2016
est32=SHL252Z,1258,1777
est33=VHI650Z,1260,2014
est34=AHJ409Z,1261,2016
est35=SHF507Z,1267,1698
est36=VHB663Z,1271,1775
est37=AHQ293Z,1288,2036
est38=SHF159Z,1288,2016
est39=AHN458Z,1349,1778
est40=AFJ279Z,1394,1996
est41=CHE701Z,1409,2003
est42=VHE125Z,1410,2016
est43=CHH860Z,1599,1719
est44=VHE225Z,1659,2015
est45=VSG584F,1720,1975
Translated Amino Acid sequence
tvgllgknfhfqiifilyiiliiiiiiiiinklllyiftpiyyyyfylnnkklfik*knk
knkkk*KKMNINIKKLDGTIYSIEGVTLETTVPELKKLIEAKSSISIPLQRVIYKGKVLR
DDKTLQFYNIEDGVTLHLAERAPEANPSQSNSGSSGSGSSSTDSISGGSNSPIDSNNILN
TVMRSIGQQQIPFDTQIRNSIANINNPSTTLINGPIPPGRDGEPYDPQREPSHERLSNYI
DLTTQEINTLMTRMNELNQQLRNNNQITDPTQRQQIQTDAGALGQSLSRLSTATNLLSQC
VNAYRPTDR---

---TQPPFTSIINNLPSILLGFQLIVSGQREQVLRGHRNIRDTLVQEILSGNSSPDNVDT
IANSFSNTIRQQTMDTTLSLQLQQNIINRNYPEIASQVARKYINRFFGIFLVSPDSEDYN
IQQEMSSFSNQFVRELVDSLATCFSNGKDGALEFLDSFVNQKVITQSPMLAPFSRMTSEY
LRDVYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTTTTTTTTTTPSRSTSSNIIPPE
WMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNNNNNNNNNNNNNTSDINNNNNN
NNNNNNNSTNSPFETVLQNSTEGTQVKYEDLIKNEEAKALSQMYQNILKK*klllknm*i
inke


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgkkfsfpnyfyiihnfnnnnnnnnnk*viiiyiypyllllflfk**kiihkvkk*
kk*kkikkney*ykeirwynl*y*rcnfrnyctrt*kin*sqifnfnptsksnl*rksit
***nfail*y*rwsyitfsrkstrsksitik*wk*w*wq**y**y*ww**ftn****yie
ysdeiywsttdti*ytns*lnckyk*sinnfdqwahstr*rwrtirstkraiarkiikly
*fnntrdqyiddtye*ikstiekq*snhrsnskttnsnrcwcigsiiikiinrhqftlsm
c*clssnrq---

---nsttihkynk*ftinsfgipincirpt*tsasws*ky*ryigsrdfirkqftr*cry
hcq*l*qyh*ttnngyhiiftittkyyq*klsrdciasrs*iyqsflwylfgftrfrglq
ystrde*f*qsir*rvgrffgnllfkw*rwct*isrficksksyntksnactil*ndk*i
ss*cl*ilstt*fitin*c*ft*ttttttk**q*kyyynnnyhhnnytfkiyiieyystr
mdgnnrn**sktiiwnikntkcnlf*rkketyhk********qq*q*q**y*ryq*****
q****qqlnqftirncftkfyrrnsski*rfnqkrrsqgfitnvpkhpqkiktspqkhvn
nk*rr

Frame B:
tvgllgknfhfqiifilyiiliiiiiiiiinklllyiftpiyyyyfylnnkklfik*knk
knkkk*KKMNINIKKLDGTIYSIEGVTLETTVPELKKLIEAKSSISIPLQRVIYKGKVLR
DDKTLQFYNIEDGVTLHLAERAPEANPSQSNSGSSGSGSSSTDSISGGSNSPIDSNNILN
TVMRSIGQQQIPFDTQIRNSIANINNPSTTLINGPIPPGRDGEPYDPQREPSHERLSNYI
DLTTQEINTLMTRMNELNQQLRNNNQITDPTQRQQIQTDAGALGQSLSRLSTATNLLSQC
VNAYRPTDR---

---TQPPFTSIINNLPSILLGFQLIVSGQREQVLRGHRNIRDTLVQEILSGNSSPDNVDT
IANSFSNTIRQQTMDTTLSLQLQQNIINRNYPEIASQVARKYINRFFGIFLVSPDSEDYN
IQQEMSSFSNQFVRELVDSLATCFSNGKDGALEFLDSFVNQKVITQSPMLAPFSRMTSEY
LRDVYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTTTTTTTTTTPSRSTSSNIIPPE
WMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNNNNNNNNNNNNNTSDINNNNNN
NNNNNNNSTNSPFETVLQNSTEGTQVKYEDLIKNEEAKALSQMYQNILKK*klllknm*i
inke

Frame C:
llaywekifisklflyyt*f**********isyyyiylplfiiiifi*iiknys*skkik
kikknkkk*ili*rn*mvqfivlkv*l*kllyqnlkn*lkpnlqfqshfke*fikekyyv
miklcnfiilkmelhyi*qkehqkqihhnqivevvvvavvvlivlvvvvihqliviiy*i
q**dllvnnryhlihkfvtqlqi*iihqql*smgpfhqvemanhtihkeshrtkdyqtil
i*qhkrsih**hv*mn*inn*etiikspiqlkdnkfkpmlvhwvnhyqdyqpppiyslnv
lmlivqptd---

---lnhhsqv**iiyhqffwdsn*lyqanvnkcfvvieileihwfkrfyqetvhqim*ip
lpialaipldnkqwiphylynynkilsietiqrlhrkslvnisivslvsfwfhqiqriti
fnkr*vvlainslesw*ilwqlafqmvkmvhlnf*ihl*ikkl*hkvqclhhsle*qvni
fvmfmnplhhlihyh*lmlvylnnnnnnkiitieillqqqlppqqlhlqdlhhrilfhqn
gwkqsklmkqdnhlehqehqvqlilkekrnlpqiiviiiiittititiiilaisiiiiit
iiiitttqpihhsklfykilqkelk*nmki*sktkkprlyhkctktssknknfssktck*
*ikk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10968-1 (Contig-U10968-1Q)
/CSM_Contig/Contig-U10968-1Q.Seq.d
(2025 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti... 2581 0.0
Contig-U12953-1 (Contig-U12953-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11800-1 (Contig-U11800-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U12498-1 (Contig-U12498-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U11052-1 (Contig-U11052-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U10858-1 (Contig-U10858-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U09729-1 (Contig-U09729-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U09569-1 (Contig-U09569-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11473-1 (Contig-U11473-1Q) /CSM_Contig/Conti... 40 0.009

>Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Contig-U10968-1Q.Seq.d
Length = 2025

Score = 2581 bits (1302), Expect = 0.0
Identities = 1332/1332 (100%)
Strand = Plus / Plus


Query: 207 tgaatattaatataaagaaattagatggtacaatttatagtattgaaggtgtaactttag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgaatattaatataaagaaattagatggtacaatttatagtattgaaggtgtaactttag 266


Query: 267 aaactactgtaccagaacttaaaaaattaattgaagccaaatcttcaatttcaatcccac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaactactgtaccagaacttaaaaaattaattgaagccaaatcttcaatttcaatcccac 326


Query: 327 ttcaaagagtaatttataaaggaaaagtattacgtgatgataaaactttgcaattttata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcaaagagtaatttataaaggaaaagtattacgtgatgataaaactttgcaattttata 386


Query: 387 atattgaagatggagttacattacatttagcagaaagagcaccagaagcaaatccatcac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atattgaagatggagttacattacatttagcagaaagagcaccagaagcaaatccatcac 446


Query: 447 aatcaaatagtggaagtagtggtagtggcagtagtagtactgatagtattagtggtggta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatcaaatagtggaagtagtggtagtggcagtagtagtactgatagtattagtggtggta 506


Query: 507 gtaattcaccaattgatagtaataatatattgaatacagtgatgagatctattggtcaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtaattcaccaattgatagtaataatatattgaatacagtgatgagatctattggtcaac 566


Query: 567 aacagataccatttgatacacaaattcgtaactcaattgcaaatataaataatccatcaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aacagataccatttgatacacaaattcgtaactcaattgcaaatataaataatccatcaa 626


Query: 627 caactttgatcaatgggcccattccaccaggtagagatggcgaaccatacgatccacaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 caactttgatcaatgggcccattccaccaggtagagatggcgaaccatacgatccacaaa 686


Query: 687 gagagccatcgcacgaaagattatcaaactatattgatttaacaacacaagagatcaata 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gagagccatcgcacgaaagattatcaaactatattgatttaacaacacaagagatcaata 746


Query: 747 cattgatgacacgtatgaatgaattaaatcaacaattgagaaacaataatcaaatcaccg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cattgatgacacgtatgaatgaattaaatcaacaattgagaaacaataatcaaatcaccg 806


Query: 807 atccaactcaaagacaacaaattcaaaccgatgctggtgcattgggtcaatcattatcaa 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atccaactcaaagacaacaaattcaaaccgatgctggtgcattgggtcaatcattatcaa 866


Query: 867 gattatcaaccgccaccaatttactctctcaatgtgttaatgcttatcgtccaaccgaca 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gattatcaaccgccaccaatttactctctcaatgtgttaatgcttatcgtccaaccgaca 926


Query: 927 gacnnnnnnnnnnaactcaaccaccattcacaagtataataaataatttaccatcaattc 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 gacnnnnnnnnnnaactcaaccaccattcacaagtataataaataatttaccatcaattc 986


Query: 987 ttttgggattccaattaattgtatcaggccaacgtgaacaagtgcttcgtggtcatagaa 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 ttttgggattccaattaattgtatcaggccaacgtgaacaagtgcttcgtggtcatagaa 1046


Query: 1047 atattagagatacattggttcaagagattttatcaggaaacagttcaccagataatgtag 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 atattagagatacattggttcaagagattttatcaggaaacagttcaccagataatgtag 1106


Query: 1107 ataccattgccaatagctttagcaataccattagacaacaaacaatggataccacattat 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 ataccattgccaatagctttagcaataccattagacaacaaacaatggataccacattat 1166


Query: 1167 ctttacaattacaacaaaatattatcaatagaaactatccagagattgcatcgcaagtcg 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 ctttacaattacaacaaaatattatcaatagaaactatccagagattgcatcgcaagtcg 1226


Query: 1227 ctcgtaaatatatcaatcgtttctttggtatctttttggtttcaccagattcagaggatt 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 ctcgtaaatatatcaatcgtttctttggtatctttttggtttcaccagattcagaggatt 1286


Query: 1287 acaatattcaacaagagatgagtagttttagcaatcaattcgttagagagttggtagatt 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 acaatattcaacaagagatgagtagttttagcaatcaattcgttagagagttggtagatt 1346


Query: 1347 ctttggcaacttgcttttcaaatggtaaagatggtgcacttgaatttctagattcatttg 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 ctttggcaacttgcttttcaaatggtaaagatggtgcacttgaatttctagattcatttg 1406


Query: 1407 taaatcaaaaagttataacacaaagtccaatgcttgcaccattctctagaatgacaagtg 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 taaatcaaaaagttataacacaaagtccaatgcttgcaccattctctagaatgacaagtg 1466


Query: 1467 aatatcttcgtgatgtttatgaatcctctccaccacttgattcattaccattaattaatg 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 aatatcttcgtgatgtttatgaatcctctccaccacttgattcattaccattaattaatg 1526


Query: 1527 ttagtttacctg 1538
||||||||||||
Sbjct: 1527 ttagtttacctg 1538


Score = 272 bits (137), Expect = 1e-72
Identities = 137/137 (100%)
Strand = Plus / Plus


Query: 1613 ccttcaagatctacatcatcgaatattattccaccagaatggatggaaacaatcgaaatt 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 ccttcaagatctacatcatcgaatattattccaccagaatggatggaaacaatcgaaatt 1672


Query: 1673 gatgaagcaagacaatcatctggaacatcaagaacaccaagtgcaacttattttaaagga 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 gatgaagcaagacaatcatctggaacatcaagaacaccaagtgcaacttattttaaagga 1732


Query: 1733 aaaaagaaacctaccac 1749
|||||||||||||||||
Sbjct: 1733 aaaaagaaacctaccac 1749


Score = 238 bits (120), Expect = 2e-62
Identities = 120/120 (100%)
Strand = Plus / Plus


Query: 1846 caacaactcaaccaattcaccattcgaaactgttttacaaaattctacagaaggaactca 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 caacaactcaaccaattcaccattcgaaactgttttacaaaattctacagaaggaactca 1905


Query: 1906 agtaaaatatgaagatttaatcaaaaacgaagaagccaaggctttatcacaaatgtacca 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 agtaaaatatgaagatttaatcaaaaacgaagaagccaaggctttatcacaaatgtacca 1965


Score = 109 bits (55), Expect = 1e-23
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactgggaaaaaattttcatttccaaattatttttatattatac 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactgggaaaaaattttcatttccaaattatttttatattatac 55


Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 1177 acaacaaaatattatcaatagaaa 1200
||||||||||| || |||||||||
Sbjct: 1552 acaacaaaataataacaatagaaa 1575


>Contig-U12953-1 (Contig-U12953-1Q) /CSM_Contig/Contig-U12953-1Q.Seq.d
Length = 136

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactgggaaaaa 23
|||||||||||||||||||||||
Sbjct: 1 cactgttggcctactgggaaaaa 23


>Contig-U11800-1 (Contig-U11800-1Q) /CSM_Contig/Contig-U11800-1Q.Seq.d
Length = 1126

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 496 tagtggtggtagtaattcaccaa 518
|||||||||||||||||||||||
Sbjct: 417 tagtggtggtagtaattcaccaa 439


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,511
Number of Sequences: 6905
Number of extensions: 26511
Number of successful extensions: 3556
Number of sequences better than 10.0: 768
length of query: 2025
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2009
effective length of database: 5,564,391
effective search space: 11178861519
effective search space used: 11178861519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Contig-U10968-1Q.Seq.d
(2025 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ350403) Dictyostelium discoideum cDNA clone:dda39b23, 3' ... 1181 0.0 1
(BJ348270) Dictyostelium discoideum cDNA clone:dda32o17, 3' ... 1181 0.0 1
(BJ441690) Dictyostelium discoideum cDNA clone:ddv47c17, 3' ... 1172 0.0 1
(BJ418920) Dictyostelium discoideum cDNA clone:ddv34p11, 5' ... 833 0.0 2
(BJ395111) Dictyostelium discoideum cDNA clone:dds37m18, 5' ... 521 0.0 2
(BJ354550) Dictyostelium discoideum cDNA clone:dda54a04, 3' ... 537 0.0 3
(BJ441996) Dictyostelium discoideum cDNA clone:ddv48c14, 3' ... 531 0.0 3
(BJ437502) Dictyostelium discoideum cDNA clone:ddv34p11, 3' ... 359 0.0 4
(BJ353102) Dictyostelium discoideum cDNA clone:dda49b04, 3' ... 523 0.0 3
(BJ351254) Dictyostelium discoideum cDNA clone:dda42g16, 3' ... 543 0.0 4
(BJ406217) Dictyostelium discoideum cDNA clone:dds34e15, 3' ... 454 0.0 3
(BJ357537) Dictyostelium discoideum cDNA clone:dda63i24, 3' ... 466 0.0 3
(BJ405512) Dictyostelium discoideum cDNA clone:dds31n23, 3' ... 551 0.0 5
(BJ408668) Dictyostelium discoideum cDNA clone:dds46g14, 3' ... 525 0.0 2
(BJ330774) Dictyostelium discoideum cDNA clone:dda32o17, 5' ... 490 0.0 2
(BJ423232) Dictyostelium discoideum cDNA clone:ddv48c14, 5' ... 490 0.0 2
(BJ364238) Dictyostelium discoideum cDNA clone:ddc31b01, 5' ... 490 0.0 2
(BJ437570) Dictyostelium discoideum cDNA clone:ddv34m16, 3' ... 323 0.0 3
(BJ336459) Dictyostelium discoideum cDNA clone:dda54a04, 5' ... 484 0.0 2
(BJ344612) Dictyostelium discoideum cDNA clone:dda19m20, 3' ... 274 0.0 4
(BJ439030) Dictyostelium discoideum cDNA clone:ddv39a07, 3' ... 274 0.0 3
(BJ406409) Dictyostelium discoideum cDNA clone:dds35m01, 3' ... 498 0.0 2
(BJ394444) Dictyostelium discoideum cDNA clone:dds35m01, 5' ... 484 e-178 2
(BJ393605) Dictyostelium discoideum cDNA clone:dds31n23, 5' ... 484 e-177 2
(BJ333393) Dictyostelium discoideum cDNA clone:dda42g16, 5' ... 484 e-174 2
(BJ378446) Dictyostelium discoideum cDNA clone:ddc31b01, 3' ... 274 e-173 5
(BJ355571) Dictyostelium discoideum cDNA clone:dda57d16, 3' ... 357 e-167 2
(BJ418984) Dictyostelium discoideum cDNA clone:ddv34m16, 5' ... 490 e-152 2
(BJ422934) Dictyostelium discoideum cDNA clone:ddv47c17, 5' ... 484 e-151 2
(BJ337464) Dictyostelium discoideum cDNA clone:dda57d16, 5' ... 478 e-150 2
(BJ335116) Dictyostelium discoideum cDNA clone:dda49b04, 5' ... 454 e-134 2
(BJ420414) Dictyostelium discoideum cDNA clone:ddv39a07, 5' ... 446 e-132 2
(BJ332620) Dictyostelium discoideum cDNA clone:dda39b23, 5' ... 476 e-131 2
(BJ397507) Dictyostelium discoideum cDNA clone:dds46g14, 5' ... 478 e-130 1
(BJ339027) Dictyostelium discoideum cDNA clone:dda63i24, 5' ... 478 e-130 1
(BJ394290) Dictyostelium discoideum cDNA clone:dds34e15, 5' ... 466 e-126 1
(BJ338321) Dictyostelium discoideum cDNA clone:dda60m20, 5' ... 418 e-112 1
(BJ327294) Dictyostelium discoideum cDNA clone:dda19m20, 5' ... 327 1e-84 1
(BJ439031) Dictyostelium discoideum cDNA clone:ddv39a08, 3' ... 151 7e-68 2
(AU266644) Dictyostelium discoideum vegetative cDNA clone:VS... 216 4e-56 2
(BJ380266) Dictyostelium discoideum cDNA clone:ddc37h16, 3' ... 222 4e-53 1
(AU270435) Dictyostelium discoideum vegetative cDNA clone:VS... 117 2e-21 1
(AU270434) Dictyostelium discoideum vegetative cDNA clone:VS... 111 1e-19 1
(BJ420415) Dictyostelium discoideum cDNA clone:ddv39a08, 5' ... 64 2e-05 1
(BJ424772) Dictyostelium discoideum cDNA clone:ddv53d15, 5' ... 34 0.009 4
(CP000361) Arcobacter butzleri RM4018, complete genome. 40 0.046 2
(AC114365) Rattus norvegicus clone CH230-124C11, WORKING DRA... 52 0.084 1
(AC094247) Rattus norvegicus clone CH230-3E4, WORKING DRAFT ... 52 0.084 1
(BJ392108) Dictyostelium discoideum cDNA clone:dds26m09, 5' ... 30 0.11 4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 40 0.54 12
(EK225313) 1095460156784 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.62 2
(BX248583) Blochmannia floridanus complete genome. 48 1.3 1
(AF273333) Lycopersicon esculentum clone BAC 19, complete se... 32 1.8 10
(AC226504) Solanum lycopersicum chromosome 2 clone C02HBa010... 32 1.8 10
(BJ387894) Dictyostelium discoideum cDNA clone:dds5m18, 5' e... 36 2.1 2
(CJ433927) Macaca fascicularis mRNA, clone: QccE-10896, 5' e... 36 2.2 2
(CJ432638) Macaca fascicularis mRNA, clone: QbsB-11145, 5' e... 38 2.2 2
(CJ446367) Macaca fascicularis mRNA, clone: QflA-11653, 5' e... 44 2.3 2
(CJ493328) Macaca fascicularis mRNA, clone: QtsA-21392, 5' e... 38 2.3 2
(BJ363978) Dictyostelium discoideum cDNA clone:ddc29j11, 5' ... 36 3.7 3
(AC005303) Homo sapiens chromosome 17, clone hRPK.488_L_1, c... 44 4.1 3
(BJ326407) Dictyostelium discoideum cDNA clone:dda16j08, 5' ... 32 5.0 3
(AC139940) Mus musculus chromosome 15, clone RP23-468K16, co... 46 5.2 1
(AC123658) Mus musculus chromosome 15, clone RP23-192C13, co... 46 5.2 1
(AP007306) Lotus japonicus genomic DNA, chromosome 2, clone:... 46 5.2 1
(AP004488) Lotus japonicus genomic DNA, chromosome 2, clone:... 46 5.2 1
(AP007849) Lotus japonicus genomic DNA, chromosome 2, clone:... 46 5.2 1
(AC210791) Zea mays chromosome UNK clone CH201-244D7; ZMMBBc... 46 5.2 1
(AC190651) Zea mays chromosome 2 clone ZMMBBb-227O1; ZMMBBb0... 46 5.2 1
(EK072217) 1092961002802 Global-Ocean-Sampling_GS-31-01-01-1... 46 5.2 1
(CW461750) fsbb001f209i23k0 Sorghum methylation filtered lib... 46 5.2 1
(CW460858) fsbb001f208d23f0 Sorghum methylation filtered lib... 46 5.2 1
(CW425989) fsbb001f137c21k0 Sorghum methylation filtered lib... 46 5.2 1
(CL168450) 104_366_10810834_148_31806_130 Sorghum methylatio... 46 5.2 1
(BQ273969) rc73g09.y1 Meloidogyne hapla egg SL1 TOPO v1 Melo... 36 5.6 2
(AC021369) Homo sapiens clone RP11-25H4, WORKING DRAFT SEQUE... 42 6.5 7
(CJ463399) Macaca fascicularis mRNA, clone: QnpA-11664, 5' e... 36 6.6 3
(CA808049) CA12LIO1IIIFb_F02 Cabernet Sauvignon Leaf - CA12L... 38 6.6 3
(AL356254) Human DNA sequence from clone RP11-502J9 on chrom... 36 6.8 7
(AC093771) Homo sapiens BAC clone RP11-121I23 from 4, comple... 42 7.0 7
(CJ485789) Macaca fascicularis mRNA, clone: QtsA-13386, 5' e... 34 7.0 3
(AL359706) Human DNA sequence from clone RP11-245H20 on chro... 38 7.4 3
(CJ462850) Macaca fascicularis mRNA, clone: QnpA-10576, 5' e... 36 8.0 2
(AL356746) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 8.1 11
(CJ486182) Macaca fascicularis mRNA, clone: QtsA-13795, 5' e... 36 8.1 2
(CJ452759) Macaca fascicularis mRNA, clone: QflA-18429, 5' e... 36 8.3 2
(AC183104) Pan troglodytes BAC clone CH251-567E15 from chrom... 40 8.4 8
(EJ881344) 1093018397967 Global-Ocean-Sampling_GS-30-02-01-1... 38 8.6 2
(AX417042) Sequence 4033 from Patent WO0228891. 34 9.0 2
(AX417038) Sequence 4029 from Patent WO0228891. 34 9.0 2
(AL596165) Listeria innocua Clip11262 complete genome, segme... 34 9.2 2
(EK349323) 1095467744485 Global-Ocean-Sampling_GS-31-01-01-1... 36 9.4 2
(BJ392135) Dictyostelium discoideum cDNA clone:dds26d17, 5' ... 32 10.0 3

>(BJ350403) Dictyostelium discoideum cDNA clone:dda39b23, 3' end,
single read.
Length = 775

Score = 1181 bits (596), Expect = 0.0
Identities = 598/599 (99%)
Strand = Plus / Minus


Query: 940 aactcaaccaccattcacaagtataataaataatttaccatcaattcttttgggattcca 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aactcaaccaccattcacaagtataataaataatttaccatcaattcttttgggattcca 716


Query: 1000 attaattgtatcaggccaacgtgaacaagtgcttcgtggtcatagaaatattagagatac 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 attaattgtatcaggccaacgtgaacaagtgcttcgtggtcatagaaatattagagatac 656


Query: 1060 attggttcaagagattttatcaggaaacagttcaccagataatgtagataccattgccaa 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 attggttcaagagattttatcaggaaacagttcaccagataatgtagataccattgccaa 596


Query: 1120 tagctttagcaataccattagacaacaaacaatggataccacattatctttacaattaca 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tagctttagcaataccattagacaacaaacaatggataccacattatctttacaattaca 536


Query: 1180 acaaaatattatcaatagaaactatccagagattgcatcgcaagtcgctcgtaaatatat 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 acaaaatattatcaatagaaactatccagagattgcatcgcaagtcgctcgtaaatatat 476


Query: 1240 caatcgtttctttggtatctttttggtttcaccagattcagaggattacaatattcaaca 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caatcgtttctttggtatctttttggtttcaccagattcagaggattacaatattcaaca 416


Query: 1300 agagatgagtagttttagcaatcaattcgttagagagttggtagattctttggcaacttg 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agagatgagtagttttagcaatcaattcgttagagagttggtagattctttggcaacttg 356


Query: 1360 cttttcaaatggtaaagatggtgcacttgaatttctagattcatttgtaaatcaaaaagt 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cttttcaaatggtaaagatggtgcacttgaatttctagattcatttgtaaatcaaaaagt 296


Query: 1420 tataacacaaagtccaatgcttgcaccattctctagaatgacaagtgaatatcttcgtga 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tataacacaaagtccaatgcttgcaccattctctagaatgacaagtgaatatcttcgtga 236


Query: 1480 tgtttatgaatcctctccaccacttgattcattaccattaattaatgttagtttacctg 1538
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 235 tgtttatgaatcctctccaccacttgattcattnccattaattaatgttagtttacctg 177

Score = 77.8 bits (39), Expect(4) = 4e-28
Identities = 39/39 (100%)
Strand = Plus / Minus


Query: 1613 ccttcaagatctacatcatcgaatattattccaccagaa 1651
|||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ccttcaagatctacatcatcgaatattattccaccagaa 64

Score = 52.0 bits (26), Expect(4) = 4e-28
Identities = 26/26 (100%)
Strand = Plus / Minus


Query: 1694 ggaacatcaagaacaccaagtgcaac 1719
||||||||||||||||||||||||||
Sbjct: 26 ggaacatcaagaacaccaagtgcaac 1

Score = 34.2 bits (17), Expect(4) = 4e-28
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 1676 gaagcaagacaatcatc 1692
|||||||||||||||||
Sbjct: 43 gaagcaagacaatcatc 27

Score = 30.2 bits (15), Expect(4) = 4e-28
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1657 ggaaacaatcgaaat 1671
|||||||||||||||
Sbjct: 60 ggaaacaatcgaaat 46

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,793,896,943
Number of extensions: 107874920
Number of successful extensions: 8788404
Number of sequences better than 10.0: 96
Length of query: 2025
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2001
Effective length of database: 97,308,875,965
Effective search space: 194715060805965
Effective search space used: 194715060805965
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Contig-U10968-1Q.Seq.d
(2025 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CU928179_580(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 57 3e-06
BX510301_2(BX510301|pid:none) Zebrafish DNA sequence from clone ... 55 1e-05
(P48510) RecName: Full=Ubiquitin domain-containing protein DSK2;... 55 1e-05
EU030444_4(EU030444|pid:none) Ornithorhynchus anatinus pseudoaut... 55 1e-05
AC152347_1(AC152347|pid:none) Medicago truncatula clone mth2-28c... 54 2e-05
AC138131_5(AC138131|pid:none) Medicago truncatula clone mth2-21h... 54 2e-05
BC052476_1(BC052476|pid:none) Danio rerio HLA-B-associated trans... 54 3e-05
BC135335_1(BC135335|pid:none) Xenopus tropicalis HLA-B associate... 54 3e-05
AM270178_48(AM270178|pid:none) Aspergillus niger contig An08c023... 53 4e-05
(Q9NIF3) RecName: Full=Ubiquilin; AltName: Full=Suppressor of No... 53 5e-05
A35098(A35098) MHC class III histocompatibility antigen HLA-B-as... 53 5e-05
AL662801_51(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
AL662801_60(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
AL662801_61(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
AL662801_63(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
AY035177_1(AY035177|pid:none) Arabidopsis thaliana putative ubiq... 52 6e-05
AL662801_66(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
AL662801_57(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
BT026279_1(BT026279|pid:none) Bos taurus HLA-B associated transc... 52 6e-05
BX548169_7(BX548169|pid:none) Pig DNA sequence from clone PigI-5... 52 6e-05
AL662801_56(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
AE017342_100(AE017342|pid:none) Cryptococcus neoformans var. neo... 52 6e-05
AB384971_1(AB384971|pid:none) Synthetic construct DNA, clone: pF... 52 6e-05
BX647244_1(BX647244|pid:none) Homo sapiens mRNA; cDNA DKFZp686L0... 52 6e-05
(Q9Z1R2) RecName: Full=Large proline-rich protein BAT3; AltName:... 52 6e-05
AL662801_64(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
AC007127_5(AC007127|pid:none) Arabidopsis thaliana chromosome 2 ... 52 6e-05
BX548169_5(BX548169|pid:none) Pig DNA sequence from clone PigI-5... 52 6e-05
BC037051_1(BC037051|pid:none) Mus musculus HLA-B-associated tran... 52 6e-05
AL662801_65(AL662801|pid:none) Human DNA sequence from clone XXb... 52 6e-05
EU282341_1(EU282341|pid:none) Sus scrofa HLA-B-associated protei... 52 6e-05
BX548169_10(BX548169|pid:none) Pig DNA sequence from clone PigI-... 52 6e-05
CR354443_3(CR354443|pid:none) Human DNA sequence from clone DAMA... 52 6e-05
BX548169_9(BX548169|pid:none) Pig DNA sequence from clone PigI-5... 52 6e-05
BX548169_12(BX548169|pid:none) Pig DNA sequence from clone PigI-... 52 6e-05
BX548169_13(BX548169|pid:none) Pig DNA sequence from clone PigI-... 52 6e-05
FM992689_971(FM992689|pid:none) Candida dubliniensis CD36 chromo... 51 1e-04
AK304879_1(AK304879|pid:none) Homo sapiens cDNA FLJ61584 complet... 51 1e-04
B84549(B84549)probable ubiquitin-like protein [imported] - Arabi... 51 2e-04
AE017348_176(AE017348|pid:none) Cryptococcus neoformans var. neo... 51 2e-04
AC007127_4(AC007127|pid:none) Arabidopsis thaliana chromosome 2 ... 51 2e-04
AF098511_1(AF098511|pid:none) Xenopus laevis Scythe mRNA, comple... 51 2e-04
AE014296_1350(AE014296|pid:none) Drosophila melanogaster chromos... 50 3e-04
AE014296_1351(AE014296|pid:none) Drosophila melanogaster chromos... 50 3e-04
AE014186_123(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 50 3e-04
FN392320_462(FN392320|pid:none) Pichia pastoris GS115 chromosome... 50 4e-04
AM910991_105(AM910991|pid:none) Plasmodium knowlesi strain H chr... 50 4e-04
EU967057_1(EU967057|pid:none) Zea mays clone 299191 unknown mRNA. 49 5e-04
CP001324_743(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 49 5e-04
(Q9SHE7) RecName: Full=NEDD8-like protein RUB1; AltName: Full=Ub... 49 0.001
AE016815_82(AE016815|pid:none) Ashbya gossypii (= Eremothecium g... 49 0.001
EF146368_1(EF146368|pid:none) Populus trichocarpa clone WS0117_J... 48 0.001
EF146180_1(EF146180|pid:none) Populus trichocarpa clone WS0116_A... 48 0.001
(P0C073) RecName: Full=NEDD8-like protein RUB1; AltName: Full=Da... 48 0.001
AP008213_1043(AP008213|pid:none) Oryza sativa (japonica cultivar... 48 0.001
AP004006_15(AP004006|pid:none) Oryza sativa Japonica Group genom... 48 0.001
AF240445_1(AF240445|pid:none) Populus tremula x Populus tremuloi... 48 0.001
BT071719_1(BT071719|pid:none) Picea sitchensis clone WS0442_N10 ... 48 0.001
AB078881_1(AB078881|pid:none) Oryza sativa CRTintP mRNA for calr... 48 0.001
CR548612_84(CR548612|pid:none) Paramecium tetraurelia macronucle... 48 0.002
BT066976_1(BT066976|pid:none) Zea mays full-length cDNA clone ZM... 48 0.002
EF144403_1(EF144403|pid:none) Populus trichocarpa clone PX0019_E... 48 0.002
CP000583_268(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 48 0.002
(O65381) RecName: Full=NEDD8-like protein RUB3; AltName: Full=Ub... 47 0.002
EU970810_1(EU970810|pid:none) Zea mays clone 351295 ubiquitin fa... 47 0.002
EF676128_1(EF676128|pid:none) Picea sitchensis clone WS02711_O04... 47 0.002
CU928167_159(CU928167|pid:none) Kluyveromyces thermotolerans str... 47 0.003
AM920437_106(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 47 0.003
CR940347_86(CR940347|pid:none) Theileria annulata strain Ankara ... 47 0.003
M30305_1(M30305|pid:none) A.californica nuclear polyhedrosis vir... 47 0.003
AY043265_24(AY043265|pid:none) Epiphyas postvittana nucleopolyhe... 47 0.003
AC051633_10(AC051633|pid:none) Oryza sativa chromosome 10 BAC OS... 47 0.003
AP007155_404(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 47 0.003
AK056939_1(AK056939|pid:none) Homo sapiens cDNA FLJ32377 fis, cl... 47 0.003
DQ813662_27(DQ813662|pid:none) Anticarsia gemmatalis nucleopolyh... 46 0.004
AY831445_1(AY831445|pid:none) Monocercomonoides sp. PA203 polyub... 46 0.006
AY522332_47(AY522332|pid:none) Agrotis segetum granulovirus, com... 46 0.006
AM270103_20(AM270103|pid:none) Aspergillus niger contig An05c003... 46 0.006
BT066802_1(BT066802|pid:none) Zea mays full-length cDNA clone ZM... 46 0.006
AM920428_461(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 46 0.006
AF103870_1(AF103870|pid:none) Dictyostelium discoideum repC-bind... 46 0.006
(O74803) RecName: Full=UV excision repair protein rhp23; AltName... 46 0.006
DQ216234_1(DQ216234|pid:none) Taeniopygia guttata clone 0058P001... 46 0.006
AF512031_25(AF512031|pid:none) Choristoneura fumiferana MNPV pol... 46 0.006
AY773347_1(AY773347|pid:none) Antheraea pernyi nucleopolyhedrovi... 46 0.006
AY327402_26(AY327402|pid:none) Choristoneura fumiferana defectiv... 45 0.008
(Q8RUC6) RecName: Full=NEDD8-like protein RUB2; AltName: Full=Ub... 45 0.008
AM502254_210(AM502254|pid:none) Leishmania infantum chromosome 36. 45 0.008
(Q10169) RecName: Full=Deubiquitination-protection protein dph1;... 45 0.008
AP003725_1(AP003725|pid:none) Oryza sativa Japonica Group genomi... 45 0.010
AF063866_144(AF063866|pid:none) Melanoplus sanguinipes entomopox... 45 0.010
FJ227128_48(FJ227128|pid:none) Euproctis pseudoconspersa nucleop... 45 0.010
(Q54LV1) RecName: Full=UV excision repair protein RAD23 homolog;... 45 0.010
A96580(A96580) hypothetical protein F15I1.4 [imported] - Arabido... 45 0.010
(P0C032) RecName: Full=NEDD8-like protein RUB3; AltName: Full=Ub... 45 0.010
AF270937_43(AF270937|pid:none) Plutella xylostella granulovirus ... 45 0.010
AC006577_1(AC006577|pid:none) Sequence of BAC F15I1 from Arabido... 45 0.013
AY521661_1(AY521661|pid:none) Pseudopleuronectes americanus 40S ... 45 0.013
AF297089_1(AF297089|pid:none) Coffea arabica ubiquitin-like prot... 44 0.017
AC098693_13(AC098693|pid:none) Oryza sativa (japonica cultivar-g... 44 0.017
AF285161_1(AF285161|pid:none) Mus musculus cell-line C3H/He poly... 44 0.017
DQ504428_22(DQ504428|pid:none) Clanis bilineata nucleopolyhedros... 44 0.017
AF499596_49(AF499596|pid:none) Phthorimaea operculella granulovi... 44 0.022
AF162221_52(AF162221|pid:none) Xestia c-nigrum granulovirus geno... 44 0.022
EU255577_47(EU255577|pid:none) Helicoverpa armigera granulovirus... 44 0.022
EF035042_123(EF035042|pid:none) Spodoptera frugiperda MNPV isola... 44 0.022
CR382124_71(CR382124|pid:none) Kluyveromyces lactis strain NRRL ... 44 0.022
AF469060_1(AF469060|pid:none) Heterodera glycines ubiquitin exte... 44 0.022
AY926456_1(AY926456|pid:none) Salmo salar ISG15-like protein mRN... 44 0.022
AF081810_43(AF081810|pid:none) Lymantria dispar nucleopolyhedrov... 44 0.029
DQ019224_1(DQ019224|pid:none) Gracilaria lemaneiformis ubiquitin... 44 0.029
(Q2KIS3) RecName: Full=Ubiquitin-like protein 7; &BC112529_1(BC... 44 0.029
AY286305_1(AY286305|pid:none) Heterodera schachtii ubiquitin ext... 44 0.029
Z28649_1(Z28649|pid:none) Acetabularia cliftonii gene for polyub... 44 0.029
AF056625_1(AF056625|pid:none) Magnaporthe grisea strain Guy-11 p... 44 0.029
AJ270957_1(AJ270957|pid:none) Lycopersicon esculentum partial mR... 44 0.029
AK013873_1(AK013873|pid:none) Mus musculus 12 days embryo head c... 44 0.029
BT020711_1(BT020711|pid:none) Bos taurus bone marrow stromal cel... 44 0.029
BC136200_1(BC136200|pid:none) Xenopus tropicalis ubiquitin-like ... 44 0.029
BC079221_1(BC079221|pid:none) Rattus norvegicus ubiquitin-like 7... 44 0.029
CR382131_88(CR382131|pid:none) Yarrowia lipolytica strain CLIB12... 44 0.029
(Q96S82) RecName: Full=Ubiquitin-like protein 7; AltName: Full=U... 44 0.029
AY037166_1(AY037166|pid:none) Homo sapiens ubiquitin-like protei... 44 0.029
FN323975_1(FN323975|pid:none) Schistosoma japonicum isolate Anhu... 44 0.029
AF539999_151(AF539999|pid:none) Mamestra configurata nucleopolyh... 43 0.038
AJ965275_1(AJ965275|pid:none) Polyplastron multivesiculatum part... 43 0.038
AJ965273_1(AJ965273|pid:none) Polyplastron multivesiculatum part... 43 0.038
UQNCR(PQ0201;S05977) ubiquitin / ribosomal protein S27a - Neuros... 43 0.038
AF104020_1(AF104020|pid:none) Bovine viral diarrhea virus-2 subg... 43 0.038
AM231624_1(AM231624|pid:none) Bovine viral diarrhea virus partia... 43 0.038
AJ965270_1(AJ965270|pid:none) Polyplastron multivesiculatum part... 43 0.038
AM231627_1(AM231627|pid:none) Bovine viral diarrhea virus partia... 43 0.038
AP007155_1027(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 43 0.038
AF104026_1(AF104026|pid:none) Bovine viral diarrhea virus-2 subg... 43 0.038
AF321456_1(AF321456|pid:none) Bovine viral diarrhea virus-1 isol... 43 0.038
AJ965272_1(AJ965272|pid:none) Polyplastron multivesiculatum part... 43 0.038
AF321454_1(AF321454|pid:none) Bovine viral diarrhea virus-1 isol... 43 0.038
(P13117) RecName: Full=Ubiquitin; 43 0.038
AF104023_1(AF104023|pid:none) Bovine viral diarrhea virus-2 subg... 43 0.038
L13783_1(L13783|pid:none) Bovine viral diarrhea virus p125 prote... 43 0.038
AF104024_1(AF104024|pid:none) Bovine viral diarrhea virus-2 subg... 43 0.038
AF104021_1(AF104021|pid:none) Bovine viral diarrhea virus-2 subg... 43 0.038
AJ965274_1(AJ965274|pid:none) Polyplastron multivesiculatum part... 43 0.038
DQ837165_21(DQ837165|pid:none) Ecotropis obliqua NPV strain A1, ... 43 0.038
U32627_1(U32627|pid:none) Candida albicans ubiquitin precursor (... 43 0.038
FN323968_1(FN323968|pid:none) Schistosoma japonicum isolate Anhu... 43 0.038
AM231623_1(AM231623|pid:none) Bovine viral diarrhea virus partia... 43 0.038
AB111967_1(AB111967|pid:none) Bovine viral diarrhea virus T-20 g... 43 0.038
UQBY(D29456;S64790;B22696;A22696) polyubiquitin 5 - yeast (Sacch... 43 0.038
AM231622_1(AM231622|pid:none) Bovine viral diarrhea virus gene f... 43 0.038
UQNC(S05323) polyubiquitin 4 - Neurospora crassa &X13140_1(X131... 43 0.038
AF321458_1(AF321458|pid:none) Bovine viral diarrhea virus-1 isol... 43 0.038
AF104025_1(AF104025|pid:none) Bovine viral diarrhea virus-2 subg... 43 0.038
AJ575140_1(AJ575140|pid:none) Sordaria macrospora partial smu599... 43 0.038
AF104022_1(AF104022|pid:none) Bovine viral diarrhea virus-2 subg... 43 0.038
AM231626_1(AM231626|pid:none) Bovine viral diarrhea virus partia... 43 0.038
AF321457_1(AF321457|pid:none) Bovine viral diarrhea virus-1 isol... 43 0.038
S55245(S55245)polyubiquitin 5 - Arabidopsis thaliana 43 0.038
AJ965271_1(AJ965271|pid:none) Polyplastron multivesiculatum part... 43 0.038
AB045758_1(AB045758|pid:none) Physarum polycephalum ppub4 mRNA f... 43 0.049
AK009025_1(AK009025|pid:none) Mus musculus adult male tongue cDN... 43 0.049
AF093505_1(AF093505|pid:none) Saccharum hybrid cultivar H32-8560... 43 0.049
AJ243802_2(AJ243802|pid:none) Kluyveromyces lactis ORF YDR183W (... 43 0.049
CQ918486_1(CQ918486|pid:none) Sequence 6 from Patent WO2004097011. 43 0.049
T07649(T07649)hypothetical protein T1P17.160 - Arabidopsis thali... 43 0.049
AJ007936_1(AJ007936|pid:none) Gibberella pulicaris ubi1 gene. &... 43 0.049
AE016816_144(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 43 0.049
CR382132_415(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 43 0.049
CU928169_242(CU928169|pid:none) Kluyveromyces thermotolerans str... 43 0.049
AF056624_1(AF056624|pid:none) Magnaporthe grisea strain Guy-11 u... 43 0.049
A29456(A29456;B29456;S48386;S38172) ubiquitin / ribosomal protei... 43 0.049
AJ698912_1(AJ698912|pid:none) Fusarium fujikuroi partial mRNA fo... 43 0.049
CR380950_216(CR380950|pid:none) Candida glabrata strain CBS138 c... 43 0.049
CS362623_1(CS362623|pid:none) Sequence 3 from Patent WO2006073320. 43 0.049
X01474_1(X01474|pid:none) Yeast gene fragment for polyubiquitin ... 43 0.049
AB045756_1(AB045756|pid:none) Physarum polycephalum ppub2 mRNA f... 43 0.049
BT058181_1(BT058181|pid:none) Salmo salar clone Contig1385 Ubiqu... 43 0.049
CR382139_690(CR382139|pid:none) Debaryomyces hansenii strain CBS... 43 0.049
AF056623_1(AF056623|pid:none) Magnaporthe grisea strain Guy-11 u... 43 0.049
FN392322_794(FN392322|pid:none) Pichia pastoris GS115 chromosome... 43 0.049
AB122067_1(AB122067|pid:none) Crassostrea gigas mRNA for polyubi... 43 0.049
CU928179_320(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 43 0.049
DQ914562_1(DQ914562|pid:none) Porphyra yezoensis polyubiquitin (... 43 0.049
AF285859_1(AF285859|pid:none) Wuchereria bancrofti ubiquitin-lik... 43 0.049
AF334030_28(AF334030|pid:none) Helicoverpa zea single nucleocaps... 43 0.049
AY303168_2(AY303168|pid:none) Degron tagging vector pSMUG2+ beta... 43 0.049
AF266693_2(AF266693|pid:none) Helicoverpa armigera nuclear polyh... 43 0.049
BC056105_1(BC056105|pid:none) Xenopus laevis hypothetical protei... 43 0.049
Y17558_1(Y17558|pid:none) Candida albicans UB14 gene. 43 0.049
AJ243800_3(AJ243800|pid:none) Kluyveromyces lactis rim101 (parti... 43 0.049
CU928179_267(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 43 0.049
AY288520_1(AY288520|pid:none) Heterodera schachtii ubiquitin ext... 43 0.049
(P49634) RecName: Full=Ubiquitin; 43 0.049
U17246_2(U17246|pid:none) Saccharomyces cerevisiae chromosome XI... 43 0.049
AC079933_43(AC079933|pid:none) Trypanosoma brucei chromosome 4 c... 43 0.049
BT075650_1(BT075650|pid:none) Osmerus mordax clone omor-rgc-508-... 43 0.049
CS362629_1(CS362629|pid:none) Sequence 9 from Patent WO2006073320. 43 0.049
BT049653_1(BT049653|pid:none) Salmo salar clone ssal-evd-544-065... 43 0.049
CU928175_164(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 43 0.049
AF361365_1(AF361365|pid:none) Oncorhynchus mykiss polyubiquitin ... 43 0.049
X87156_1(X87156|pid:none) Acanthamoeba sp. 4b3 polyubiquitin gene. 43 0.049
CQ918481_1(CQ918481|pid:none) Sequence 1 from Patent WO2004097011. 43 0.049
AF473831_1(AF473831|pid:none) Heterodera glycines ubiquitin exte... 43 0.049
AB045757_1(AB045757|pid:none) Physarum polycephalum ppub3 mRNA f... 43 0.049
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019... 43 0.049
FM992690_680(FM992690|pid:none) Candida dubliniensis CD36 chromo... 43 0.049
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 43 0.049
M31426_1(M31426|pid:none) Synthetic yeast (S.cerevisiae) ubiquit... 43 0.049
U43128_1(U43128|pid:none) Naegleria fowleri ubiquitin mRNA, part... 43 0.049
AY857455_1(AY857455|pid:none) Suberites domuncula L40-ubiquitin ... 43 0.049
DQ914563_1(DQ914563|pid:none) Porphyra yezoensis polyubiquitin (... 43 0.049
CR382131_778(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 43 0.049
(P42739) RecName: Full=Ubiquitin; 43 0.049
AY318871_96(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 43 0.049
AE017341_332(AE017341|pid:none) Cryptococcus neoformans var. neo... 43 0.049
AJ277169_1(AJ277169|pid:none) Galdieria sulphuraria mRNA for ubi... 43 0.049
CR380953_349(CR380953|pid:none) Candida glabrata strain CBS138 c... 43 0.049
AL031854_8(AL031854|pid:none) S.pombe chromosome II cosmid c337.... 43 0.049
FN315480_1(FN315480|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 42 0.065
X92422_1(X92422|pid:none) Z.mays mRNA for ubiquitin/ribosomal pr... 42 0.065
FN316690_1(FN316690|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
FJ438516_1(FJ438516|pid:none) Epinephelus coioides ubiquitin C v... 42 0.065
AJ965259_1(AJ965259|pid:none) Dasytricha ruminantium partial mRN... 42 0.065
BC168051_1(BC168051|pid:none) Xenopus tropicalis cDNA clone MGC:... 42 0.065
AK010964_1(AK010964|pid:none) Mus musculus 13 days embryo liver ... 42 0.065
AY552058_1(AY552058|pid:none) Aedes aegypti ribosomal protein S2... 42 0.065
S11248(S11248)ubiquitin / ribosomal protein CEP52 - mouse (fragm... 42 0.065
BC049473_1(BC049473|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 42 0.065
BC127395_1(BC127395|pid:none) Danio rerio zgc:153686, mRNA (cDNA... 42 0.065
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 42 0.065
M22214_1(M22214|pid:none) Synthetic human ubiquitin gene (Phe4- ... 42 0.065
L31492_1(L31492|pid:none) Caenorhabditis elegans ubiquitin/ribos... 42 0.065
AF395864_1(AF395864|pid:none) Branchiostoma belcheri ubiquitin m... 42 0.065
AY752852_1(AY752852|pid:none) Culicoides sonorensis clone CsUB1 ... 42 0.065
AB003730_1(AB003730|pid:none) Homo sapiens gene for polyubiquiti... 42 0.065
EF103394_1(EF103394|pid:none) Haliotis discus discus ubiquitin-l... 42 0.065
(P19848) RecName: Full=Ubiquitin; &AB210844_1(AB210844|pid:none... 42 0.065
AB170649_1(AB170649|pid:none) Macaca fascicularis brain cDNA clo... 42 0.065
AF506022_1(AF506022|pid:none) Tribolium castaneum isolate pCPUb ... 42 0.065
FN315482_1(FN315482|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
AP008215_960(AP008215|pid:none) Oryza sativa (japonica cultivar-... 42 0.065
AJ416499_1(AJ416499|pid:none) Pleurotus ostreatus partial mRNA f... 42 0.065
Y17004_1(Y17004|pid:none) Suberites domuncula mRNA for monoubiqu... 42 0.065
DQ363465_1(DQ363465|pid:none) Ictalurus punctatus clone C153BB02... 42 0.065
FN323957_1(FN323957|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
BC045004_1(BC045004|pid:none) Xenopus laevis similar to ubiquiti... 42 0.065
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 42 0.065
FN315486_1(FN315486|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
BT078470_1(BT078470|pid:none) Lepeophtheirus salmonis clone lsal... 42 0.065
AB036060_1(AB036060|pid:none) Oncorhynchus mykiss mRNA for ubiqu... 42 0.065
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526... 42 0.065
AK300882_1(AK300882|pid:none) Homo sapiens cDNA FLJ51326 complet... 42 0.065
AF322415_1(AF322415|pid:none) Synthetic construct HPV type 6b hu... 42 0.065
BC006680_1(BC006680|pid:none) Mus musculus ubiquitin C, mRNA (cD... 42 0.065
EU677732_1(EU677732|pid:none) Caenorhabditis brenneri clone 13D4... 42 0.065
FN316698_1(FN316698|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
BT046483_1(BT046483|pid:none) Salmo salar clone ssal-evd-569-157... 42 0.065
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 42 0.065
BT073010_1(BT073010|pid:none) Oncorhynchus mykiss clone omyk-evn... 42 0.065
FN316688_1(FN316688|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
BT057945_1(BT057945|pid:none) Salmo salar clone ssal-rgf-504-035... 42 0.065
AJ965268_1(AJ965268|pid:none) Eudiplodinium maggii partial mRNA ... 42 0.065
AY819759_1(AY819759|pid:none) Homo sapiens ubiquitin C splice va... 42 0.065
AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene... 42 0.065
BC021837_1(BC021837|pid:none) Mus musculus ubiquitin C, mRNA (cD... 42 0.065
CP001328_432(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 42 0.065
FN315483_1(FN315483|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
AB032025_1(AB032025|pid:none) Canis lupus familiaris mRNA for ub... 42 0.065
AF321441_1(AF321441|pid:none) Galleria mellonella polyubiquitin ... 42 0.065
AE014134_1952(AE014134|pid:none) Drosophila melanogaster chromos... 42 0.065
BT043890_1(BT043890|pid:none) Salmo salar clone HM4_3735 ribosom... 42 0.065
AK003190_1(AK003190|pid:none) Mus musculus 18-day embryo whole b... 42 0.065
D63791_1(D63791|pid:none) Homo sapiens UbC gene for polyubiquiti... 42 0.065
AY813866_1(AY813866|pid:none) Schistosoma japonicum clone SJCHGC... 42 0.065
AB098891_1(AB098891|pid:none) Bos taurus mRNA for similar to ubi... 42 0.065
AK291539_1(AK291539|pid:none) Homo sapiens cDNA FLJ75516 complet... 42 0.065
AL117514_1(AL117514|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0... 42 0.065
DQ353761_1(DQ353761|pid:none) Ictalurus punctatus isolate C16JH0... 42 0.065
EU558350_1(EU558350|pid:none) Phoronis muelleri putative ubiquit... 42 0.065
BT058174_1(BT058174|pid:none) Salmo salar clone Contig1232 Ubiqu... 42 0.065
BC114001_1(BC114001|pid:none) Bos taurus polyubiquitin, mRNA (cD... 42 0.065
BC019850_1(BC019850|pid:none) Mus musculus ubiquitin B, mRNA (cD... 42 0.065
DQ011576_1(DQ011576|pid:none) Euphorbia characias polyubiquitin ... 42 0.065
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD... 42 0.065
AK007273_1(AK007273|pid:none) Mus musculus adult male testis cDN... 42 0.065
FN316689_1(FN316689|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
UQFFM(A02575)ubiquitin - Mediterranean fruit fly 42 0.065
BC093190_1(BC093190|pid:none) Danio rerio zgc:112080, mRNA (cDNA... 42 0.065
DQ216251_1(DQ216251|pid:none) Taeniopygia guttata clone 0063P002... 42 0.065
BT079002_1(BT079002|pid:none) Esox lucius clone eluc-evq-516-246... 42 0.065
BT073770_1(BT073770|pid:none) Oncorhynchus mykiss clone omyk-evo... 42 0.065
AJ965276_1(AJ965276|pid:none) Epidinium ecaudatum partial mRNA f... 42 0.065
BC049478_1(BC049478|pid:none) Danio rerio zgc:66168, mRNA (cDNA ... 42 0.065
AJ965269_1(AJ965269|pid:none) Metadinium medium partial mRNA for... 42 0.065
AB009010_1(AB009010|pid:none) Homo sapiens UbC1 mRNA for polyubi... 42 0.065
AY072292_1(AY072292|pid:none) Spodoptera frugiperda ribosomal pr... 42 0.065
S11296(S11296)polyubiquitin (clone arf3) - mouse (fragment) 42 0.065
AK018706_1(AK018706|pid:none) Mus musculus adult male kidney cDN... 42 0.065
AF348700_1(AF348700|pid:none) Homo sapiens ubiquitin A-52 residu... 42 0.065
(P84589) RecName: Full=Ubiquitin; Flags: Fragment; 42 0.065
DQ673439_1(DQ673439|pid:none) Diaphorina citri putative ubiquiti... 42 0.065
AY394942_1(AY394942|pid:none) Danio rerio clone RK046A2G11 ubiqu... 42 0.065
BC167447_1(BC167447|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 42 0.065
EU139240_1(EU139240|pid:none) Flustra foliacea ubiquinated putat... 42 0.065
D63782_1(D63782|pid:none) Cricetulus sp. gene for polyubiquitin,... 42 0.065
M10939_1(M10939|pid:none) Human ubiquitin mRNA, 3' end. 42 0.065
DQ216246_1(DQ216246|pid:none) Taeniopygia guttata clone 0058P001... 42 0.065
EF473650_1(EF473650|pid:none) Sus scrofa ubiquitin B (UBB) gene,... 42 0.065
AK168448_1(AK168448|pid:none) Mus musculus 17 days embryo kidney... 42 0.065
AL953908_5(AL953908|pid:none) Zebrafish DNA sequence from clone ... 42 0.065
AF323508_1(AF323508|pid:none) Synthetic construct HPV type 6b hu... 42 0.065
AB291582_1(AB291582|pid:none) Solea senegalensis rpS27a mRNA for... 42 0.065
AB099083_1(AB099083|pid:none) Bos taurus mRNA for similar to pol... 42 0.065
BT073985_1(BT073985|pid:none) Oncorhynchus mykiss clone omyk-evo... 42 0.065
EU780426_128(EU780426|pid:none) Spodoptera litura nucleopolyhedr... 42 0.065
FN316697_1(FN316697|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
BC054976_1(BC054976|pid:none) Xenopus laevis ubiquitin C, mRNA (... 42 0.065
DQ445503_1(DQ445503|pid:none) Graphocephala atropunctata isolate... 42 0.065
A63899_1(A63899|pid:none) Sequence 24 from Patent WO9723633. &C... 42 0.065
AY732488_1(AY732488|pid:none) Homo sapiens ubiquitin C splice va... 42 0.065
I45964(I45964) polyubiquitin - bovine (fragment) &M62428_1(M624... 42 0.065
EU586196_1(EU586196|pid:none) Malus x domestica cultivar Fuji po... 42 0.065
BC157791_1(BC157791|pid:none) Xenopus tropicalis hypothetical pr... 42 0.065
AF060232_1(AF060232|pid:none) Botryotinia fuckeliana monoubiquit... 42 0.065
(P0C274) RecName: Full=Ubiquitin; &(P62972) RecName: Fu &(P6297... 42 0.065
FN323949_1(FN323949|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
DQ115333_1(DQ115333|pid:none) Caenorhabditis remanei ubiquitin p... 42 0.065
BT058428_1(BT058428|pid:none) Salmo salar clone Contig656 Ubiqui... 42 0.065
FN323948_1(FN323948|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
CR940347_507(CR940347|pid:none) Theileria annulata strain Ankara... 42 0.065
FN320998_1(FN320998|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
DQ216239_1(DQ216239|pid:none) Taeniopygia guttata clone 0058P004... 42 0.065
(O46543) RecName: Full=Ubiquitin; 42 0.065
AF045474_1(AF045474|pid:none) Schistosoma mansoni polyubiquitin ... 42 0.065
X94621_1(X94621|pid:none) C.alpestris ubiquitin gene. 42 0.065
AM040011_1(AM040011|pid:none) Agriotes lineatus mRNA for ubiquit... 42 0.065
DQ413222_1(DQ413222|pid:none) Acyrthosiphon pisum isolate WHAP02... 42 0.065
AY254344_1(AY254344|pid:none) Schistosoma japonicum polyubiquiti... 42 0.065
X08013_1(X08013|pid:none) Chinese hamster mRNA for ubiquitin. 42 0.065
M17597_1(M17597|pid:none) Human poly-ubiquitin mRNA, complete cds. 42 0.065
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822... 42 0.065
BT083357_1(BT083357|pid:none) Anoplopoma fimbria clone afim-evh-... 42 0.065
D83208_1(D83208|pid:none) Cavia cobaya mRNA for ubiquitin, compl... 42 0.065
DQ216250_1(DQ216250|pid:none) Taeniopygia guttata clone 0058P002... 42 0.065
AJ965257_1(AJ965257|pid:none) Dasytricha ruminantium partial mRN... 42 0.065
AF481059_1(AF481059|pid:none) Aplysia californica ubiquitin/ribo... 42 0.065
AF060501_1(AF060501|pid:none) Botryotinia fuckeliana polyubiquit... 42 0.065
AF175521_1(AF175521|pid:none) Emericella nidulans UBI1 (ubi1) mR... 42 0.065
EU247124_1(EU247124|pid:none) Lycosa singoriensis 60S ribosomal ... 42 0.065
A62334_1(A62334|pid:none) Sequence 22 from Patent WO9712992. &A... 42 0.065
DQ420617_1(DQ420617|pid:none) Anser anser ubiquitin C II mRNA, c... 42 0.065
(P42740) RecName: Full=Ubiquitin; 42 0.065
AE014298_3040(AE014298|pid:none) Drosophila melanogaster chromos... 42 0.065
AE014134_744(AE014134|pid:none) Drosophila melanogaster chromoso... 42 0.065
AB098769_1(AB098769|pid:none) Bos taurus mRNA for similar to pol... 42 0.065
BT048991_1(BT048991|pid:none) Salmo salar clone ssal-evf-534-259... 42 0.065
X02650_1(X02650|pid:none) Chicken mRNA for ubiquitin. 42 0.065
AJ388512_1(AJ388512|pid:none) Canis familiaris mRNA for ubiquiti... 42 0.065
AE016819_518(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 42 0.065
M62429_1(M62429|pid:none) Bovine polyubiquitin mRNA, 3' end, clo... 42 0.065
S43306(S43306)polyubiquitin 6 - Geodia cydonium 42 0.065
U61404_1(U61404|pid:none) Manduca sexta polyubiquitin gene, 5' r... 42 0.065
AY752793_1(AY752793|pid:none) Culicoides sonorensis clone CsARU ... 42 0.065
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 42 0.065
BT073019_1(BT073019|pid:none) Oncorhynchus mykiss clone omyk-evn... 42 0.065
EF101928_203(EF101928|pid:none) Acanthocystis turfacea Chlorella... 42 0.065
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit... 42 0.065
AM049143_1(AM049143|pid:none) Dascillus cervinus mRNA for riboso... 42 0.065
EU139195_1(EU139195|pid:none) Flustra foliacea ubiquinated putat... 42 0.065
AB021972_1(AB021972|pid:none) Bombyx mori UBI1 mRNA for ubiquiti... 42 0.065
AE016820_243(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 42 0.065
AF517849_1(AF517849|pid:none) Griffithsia japonica isolate Gj532... 42 0.065
BT043771_1(BT043771|pid:none) Salmo salar clone HM6_1209 ubiquit... 42 0.065
M11691_1(M11691|pid:none) Synthetic beta-galactosidase/mouse ubi... 42 0.065
AF031628_1(AF031628|pid:none) Schizophyllum commune polyubiquiti... 42 0.065
FN316696_1(FN316696|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
EU428780_1(EU428780|pid:none) Plutella xylostella ubiquitin gene... 42 0.065
AY961529_1(AY961529|pid:none) Lysiphlebus testaceipes ribosomal ... 42 0.065
AY771321_1(AY771321|pid:none) Scleronephthya gracillimum ubuiqui... 42 0.065
X98063_1(X98063|pid:none) P.sylvestris mRNA for polyubiquitin. 42 0.065
AB089615_1(AB089615|pid:none) Gorilla gorilla UbC gene for polyu... 42 0.065
AB099044_1(AB099044|pid:none) Bos taurus mRNA for similar to pol... 42 0.065
BC053371_1(BC053371|pid:none) Homo sapiens ribosomal protein S27... 42 0.065
M24507_1(M24507|pid:none) Synthetic human ubiquitin (UBCEP80) ge... 42 0.065
FJ890359_1(FJ890359|pid:none) Oncorhynchus tshawytscha ubiquitin... 42 0.065
X74405_5(X74405|pid:none) Artemia franciscana gene for polyubiqu... 42 0.065
CQ904363_1(CQ904363|pid:none) Sequence 1 from Patent WO2004085466. 42 0.065
A29584(A29584) ubiquitin precursor - pig (fragment) &M18159_1(M... 42 0.065
BT058528_1(BT058528|pid:none) Salmo salar clone Contig1643 Ubiqu... 42 0.065
EU302560_1(EU302560|pid:none) Lineus viridis ribosomal protein r... 42 0.065
FN357410_7(FN357410|pid:none) Schistosoma mansoni genome sequenc... 42 0.065
AM040014_1(AM040014|pid:none) Eucinetus sp. APV-2005 mRNA for ub... 42 0.065
DQ216243_1(DQ216243|pid:none) Taeniopygia guttata clone 0058P001... 42 0.065
L19056_1(L19056|pid:none) Artemia franciscana ubiquitin mRNA, pa... 42 0.065
EU306853_1(EU306853|pid:none) Drosophila silvestris clone sv3E-T... 42 0.065
UQWO7A(S13136) ubiquitin / ribosomal protein S27a - tobacco horn... 42 0.065
DQ216252_1(DQ216252|pid:none) Taeniopygia guttata clone 0058P000... 42 0.065
EF633956_1(EF633956|pid:none) Ornithodoros parkeri clone OP-73 u... 42 0.065
(P14792) RecName: Full=Ubiquitin; &(P59669) RecName: Fu &EF1015... 42 0.065
AY961507_1(AY961507|pid:none) Lysiphlebus testaceipes ribosomal ... 42 0.065
DQ673413_1(DQ673413|pid:none) Diaphorina citri putative ubiquiti... 42 0.065
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub... 42 0.065
AY485340_1(AY485340|pid:none) Schistosoma mansoni ubiquitin mRNA... 42 0.065
Y12082_1(Y12082|pid:none) Suberites domuncula mRNA for polyubiqu... 42 0.065
FN316687_1(FN316687|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
DQ216232_1(DQ216232|pid:none) Taeniopygia guttata clone 0058P006... 42 0.065
U67931_1(U67931|pid:none) Gallus gallus ubiquitin/ribosomal prot... 42 0.065
AY891423_1(AY891423|pid:none) Synthetic construct Homo sapiens c... 42 0.065
DQ660326_1(DQ660326|pid:none) Oryzias javanicus ubiquitin mRNA, ... 42 0.065
AE017351_259(AE017351|pid:none) Cryptococcus neoformans var. neo... 42 0.065
AE014296_755(AE014296|pid:none) Drosophila melanogaster chromoso... 42 0.065
FN357410_6(FN357410|pid:none) Schistosoma mansoni genome sequenc... 42 0.065
DQ278173_1(DQ278173|pid:none) Theileria lestoquardi clone 34 unk... 42 0.065
U45317_1(U45317|pid:none) Litomosoides sigmodontis ubiquitin c-t... 42 0.065
U29158_1(U29158|pid:none) Zea mays polyubiquitin (MubC5) mRNA, c... 42 0.065
A31560(A31560) polyuciquitin - fruit fly (Drosophila melanogaste... 42 0.065
DQ216235_1(DQ216235|pid:none) Taeniopygia guttata clone 0058P004... 42 0.065
AY751539_1(AY751539|pid:none) Cloning vector pHUE, complete sequ... 42 0.065
AJ937554_1(AJ937554|pid:none) Collozoum inerme partial pub gene,... 42 0.065
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 42 0.065
S17435(S17435;S17437) polyubiquitin 6 - common sunflower &X5700... 42 0.065
AF400203_1(AF400203|pid:none) Spodoptera frugiperda ribosomal pr... 42 0.065
AJ965263_1(AJ965263|pid:none) Isotricha prostoma partial mRNA fo... 42 0.065
AM259605_1(AM259605|pid:none) Salmo salar partial mRNA for ubiqu... 42 0.065
FN321000_1(FN321000|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
BT076736_1(BT076736|pid:none) Caligus rogercresseyi clone crog-e... 42 0.065
BC103477_1(BC103477|pid:none) Rattus norvegicus ubiquitin C, mRN... 42 0.065
AJ965277_1(AJ965277|pid:none) Epidinium ecaudatum partial mRNA f... 42 0.065
AF502248_1(AF502248|pid:none) Epinephelus coioides 40s ribosomal... 42 0.065
BT076264_1(BT076264|pid:none) Caligus rogercresseyi clone crog-e... 42 0.065
FN315485_1(FN315485|pid:none) Schistosoma japonicum isolate Anhu... 42 0.065
AB045755_1(AB045755|pid:none) Physarum polycephalum ppub1 mRNA f... 42 0.065
AF061807_1(AF061807|pid:none) Elaeagnus umbellata polyubiquitin ... 42 0.084
AF250284_180(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 42 0.084
AJ309010_1(AJ309010|pid:none) Nicotiana tabacum mRNA for polyubi... 42 0.084
UQSY(S02222)ubiquitin precursor - soybean (fragment) 42 0.084
EU348739_1(EU348739|pid:none) Adonis aestivalis var. palaestina ... 42 0.084
M74156_1(M74156|pid:none) Nicotiana sylvestris (clone 6PU4) pent... 42 0.084
S40611(S40611;S34707) polyubiquitin 5 - Volvox carteri &X74214_... 42 0.084
UQFS(S03599)ubiquitin precursor - common sunflower (fragment) 42 0.084
T29399(T29399) hypothetical protein C16C8.13 - Caenorhabditis el... 42 0.084
DQ336883_1(DQ336883|pid:none) Zinnia elegans putative pentameric... 42 0.084
AF064593_1(AF064593|pid:none) Schistosoma japonicum ubiquitin/ri... 42 0.084
L22576_1(L22576|pid:none) Solanum tuberosum ubiquitin/ribosomal ... 42 0.084
EF120638_1(EF120638|pid:none) Hevea brasiliensis ubiquitin exten... 42 0.084
S12161(S12161)polyubiquitin - large-leaved lupine (fragment) 42 0.084
EU953492_1(EU953492|pid:none) Zea mays clone 1424191 unknown mRNA. 42 0.084
(Q93725) RecName: Full=NEDD8; AltName: Full=Ubiquitin-like prote... 42 0.084
EF134146_1(EF134146|pid:none) Karlodinium micrum strain CCMP1975... 42 0.084
EU284858_1(EU284858|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 42 0.084
AM466823_1(AM466823|pid:none) Vitis vinifera contig VV78X042351.... 42 0.084
AL161503_16(AL161503|pid:none) Arabidopsis thaliana DNA chromoso... 42 0.084
S18535(S18535) ubiquitin / ribosomal protein CEP52 - Tetrahymena... 42 0.084
DQ320121_3(DQ320121|pid:none) Binary vector pBINPLUS/ARS, comple... 42 0.084
EU153190_1(EU153190|pid:none) Heterocapsa triquetra clone Htr-cD... 42 0.084
EF145452_1(EF145452|pid:none) Populus trichocarpa clone WS01124_... 42 0.084
AF298826_1(AF298826|pid:none) Prunus avium ubiquitin/ribosomal p... 42 0.084
CP000592_120(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.084
JH0226(JH0226) ubiquitin / ribosomal protein S27a.1 - barley &M... 42 0.084
AY748808_1(AY748808|pid:none) Sphaerozoum italicum polyubiquitin... 42 0.084
AB033601_1(AB033601|pid:none) Cucumis melo mRNA for polyubiquiti... 42 0.084
EF134217_1(EF134217|pid:none) Noctiluca scintillans isolate Nsc-... 42 0.084
EU328536_1(EU328536|pid:none) Lolium temulentum ubiquitin (UBQ) ... 42 0.084
AB005240_15(AB005240|pid:none) Arabidopsis thaliana genomic DNA,... 42 0.084
JQ1728(JQ1728)ubiquitin precursor - Arabidopsis thaliana (fragme... 42 0.084
AM040015_1(AM040015|pid:none) Micromalthus debilis mRNA for ubiq... 42 0.084
EU586197_1(EU586197|pid:none) Malus x domestica cultivar Fuji po... 42 0.084
EU436761_1(EU436761|pid:none) Sandersonia aurantiaca clone SAND7... 42 0.084
EU586198_1(EU586198|pid:none) Malus x domestica cultivar Fuji po... 42 0.084
AM426496_4(AM426496|pid:none) Vitis vinifera contig VV78X245184.... 42 0.084
AY099129_1(AY099129|pid:none) Cercomonas edax isolate pub1 polyu... 42 0.084
AY086062_1(AY086062|pid:none) Arabidopsis thaliana clone 20908 m... 42 0.084
EU959003_1(EU959003|pid:none) Zea mays clone 208868 40S ribosoma... 42 0.084
DQ118117_1(DQ118117|pid:none) Lupinus albus polyubiquitin mRNA, ... 42 0.084
CP000588_161(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.084
AY372537_1(AY372537|pid:none) Cucumis sativus ubiquitin extensio... 42 0.084
BT052956_1(BT052956|pid:none) Medicago truncatula clone MTYFL_FM... 42 0.084
AY099133_1(AY099133|pid:none) Cercomonas edax isolate pub5 polyu... 42 0.084
BT051458_1(BT051458|pid:none) Medicago truncatula clone MTYF1_F2... 42 0.084
U29160_1(U29160|pid:none) Zea mays clone MubG10 ubiquitin fusion... 42 0.084
AC152972_3(AC152972|pid:none) Oryza sativa (japonica cultivar-gr... 42 0.084
BT035083_1(BT035083|pid:none) Zea mays full-length cDNA clone ZM... 42 0.084
AF502575_1(AF502575|pid:none) Musa acuminata ubiquitin (UBQ1) ge... 42 0.084
JT0492(JT0492) ubiquitin 2 - Tetrahymena pyriformis (fragment) ... 42 0.084
EF676259_1(EF676259|pid:none) Picea sitchensis clone WS02724_L09... 42 0.084
U84969_1(U84969|pid:none) Arabidopsis thaliana ubiquitin (UBQ11)... 42 0.084
S42643(S42643)ubiquitin / ribosomal protein S27a - potato (fragm... 42 0.084
CR954212_116(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 42 0.084
EU081898_1(EU081898|pid:none) Triticum aestivum polyubiquitin (W... 42 0.084
EU952584_1(EU952584|pid:none) Zea mays clone 1283821 40S ribosom... 42 0.084
AY375335_1(AY375335|pid:none) Gossypium barbadense fiber polyubi... 42 0.084
AP008211_348(AP008211|pid:none) Oryza sativa (japonica cultivar-... 42 0.084
AF502576_1(AF502576|pid:none) Musa acuminata ubiquitin (UBQ2) ge... 42 0.084
AY042884_1(AY042884|pid:none) Arabidopsis thaliana Unknown prote... 42 0.084
AF528678_1(AF528678|pid:none) Arabidopsis lyrata putative polyub... 42 0.084
AJ871355_1(AJ871355|pid:none) Nyctotherus ovalis partial gene fo... 42 0.084
AF035383_1(AF035383|pid:none) Arabidopsis thaliana polyubiquitin... 42 0.084
DQ887067_1(DQ887067|pid:none) Arachis hypogaea polyubiquitin 10 ... 42 0.084
AL662988_4(AL662988|pid:none) Oryza sativa genomic DNA, chromoso... 42 0.084

>CU928179_580(CU928179|pid:none) Zygosaccharomyces rouxii strain
CBS732 chromosome G complete sequence.
Length = 369

Score = 57.0 bits (136), Expect = 3e-06
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +2

Query: 266 ETTVPELKKLIEAKSSISIPLQRVIYKGKVLRDDKTLQFYNIEDGVTLHLAE 421
E+TV K+ I S I QR+IY GK+L+DD+TLQFYN++DG ++HL +
Sbjct: 22 ESTVSTFKEEISKVSEIPASSQRLIYSGKILKDDQTLQFYNLQDGHSVHLVK 73

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,552,624,655
Number of extensions: 44190910
Number of successful extensions: 97713
Number of sequences better than 10.0: 858
Number of HSP's gapped: 97666
Number of HSP's successfully gapped: 1729
Length of query: 675
Length of database: 1,040,966,779
Length adjustment: 135
Effective length of query: 540
Effective length of database: 608,388,304
Effective search space: 328529684160
Effective search space used: 328529684160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.77 gvh: 0.26 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U10968-1 is cyt

VS (DIR, S) 2
VH (FL, L) 6
VF (FL, S) 0
AH (FL, L) 8
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 5
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0