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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10938-1
Contig ID Contig-U10938-1
Contig update 2002.12.18
Contig sequence 
>Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Contig-U10938-1Q.Seq.d
ATTTTATTTTTATAGTATTCTCTTTTAAAAAAAAAACAATAACATATTAT
TATTTGAATATTTTTCAAATTTAAAATTATTTATTTAAAACAACACAACA
GAAACAATTCATATATATAATTATATTAGATACAAATAGATATAGATATA
ATAAATAAATAAATAAATATATATAAATATATATATTTATAAATATATAT
TTGTAAATATATAAATATAAAATGAAATGTATATCAAATATAACATCAAG
TAGCAGAAAACAAAAATTTTTAATTTTATTTATCCTTGTTGCAAGTTCTA
TATTGTTGATGTTTTATGATGAATTTAGTTTTATAACAGTATTTAATAAA
GACAACAACAACAACAACAACAACAACAACAACTATAGAACAAATCAATT
TAAAGATAACGATAATATTTTTTACACTAATCGAATTTTAGAAGAAACTA
GGAATTCAGATGTTGTCATTTTTCTATGGGATCCATCATCAGAACGCGAT
GATTGGACAGGAATTTTAAAATCTAATAATTTAGTAACACAACAACAAAT
TGATGATTATAATAATAAAAAATCTTTATTTACTTCAACAACATCAACAA
CTTCTCATCCTTATACTAGTAGTAGAAGTAGTACTAGTACTAGTAGTAGA
AGTAGTACTAGTACTAGTAGTAGAAGTAGTACTAGTGGAGGTAGAAGTAG
TAGTGGAGGTAGTAGTACTAGTAGTGGAGGTAGTAGTACTAGTAGTGGAA
GTAGTAGTACAACTAGTAGTAGAAGGTAGTAGTACCACTAGTAGAAGTAG
TAGTACTACTGGT----------TGTTTCAACCAATATTGGATATTATAC
ACCCCAATTTGTGTCAATGAAAGGATTGGGTGACCCATATCTTTGTCAAT
AGGAATGAAGATACTTGTAAGAATTGTTTTAATCTTGATGATCATTATAC
CCTAATGGCATGGGTCAAGCCATCAACATTCTCTGATCAGAGAATTATTG
ATAAGAATCATGCGGGAACAATTAGTGGATACAATTTCGATATTCAAAAG
ACATCAGGTGGTCGTGGTGTGGCTAGACTATGTGCGGGTACAGCATGTTT
TGAATCCTTCAAGAGTATACCCAACGATTTATGGTCACATGTTGCTGTGG
TGTTTAGTTGTAATAATTTAGATGTTCAAAAGAATCGTGTCACTTTTTAT
ATAAATGGTGTGTTTAATGCAGAGTTTGATAATTTTAAACCAACTAAAAT
TAATGACTTCCCTTTGGTAATTGGTAAATCTGGTAAAAAAACTGAATCAA
CAAGTTATCATGGTATGATTGATGATATAATGATCTTTAATATCTCTCTA
ACCTCTGATGATATCAAATATGTACTCTCTTCAAAACCAAATCTTTCCAC
CTTTAAATTTGCAAATGATCTTCAACTCTTTTATGATTTCGATTATAATC
CAAATAATCCAAAATCACATGATCGTAATATAGTTCGTGATAAATCAATT
TATAAAAATGATGGTACCTTTGCTAGTGGTTCAAGTGATGACTATTCTGA
AAAAATAACTTCAATAAGTAAAGAAATATCTTTTAATAAAAAATTATAAA
AAAATAAAACTAATAATAATAATAATA
Gap gap included
Contig length 1617
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1631265
End point 1632829
Strand (PLUS/MINUS) PLUS
Number of clones 15
Number of EST 26
Link to clone list U10938
List of clone(s) 

est1=AHN678F,1,552
est2=AHN656F,6,539
est3=CHN592F,6,539
est4=AHE250F,12,805
est5=SHF509F,12,781
est6=SHL784F,12,676
est7=AHP754F,26,458
est8=AHP785F,31,303
est9=AFI316F,73,722
est10=AHB653F,76,682
est11=AHB831F,312,586
est12=CHQ228F,328,812
est13=AFI316Z,814,1526
est14=CHQ228Z,844,1600
est15=SHL784Z,853,1562
est16=AHE250Z,856,1617
est17=AHB653Z,880,1599
est18=AHB831Z,883,1594
est19=SFI232Z,883,1526
est20=SHF509Z,883,1441
est21=AHN606Z,923,1605
est22=AHN678Z,954,1599
est23=AHN656Z,973,1613
est24=AHP785Z,1013,1593
est25=AHP754Z,1030,1614
est26=AHP327Z,1304,1602
Translated Amino Acid sequence 
ilfl*ysllkkkq*hiii*iffkfkiiylkqhnrnnsyi*ly*iqididiink*iniyky
iyl*iyickyinik*nvyqi*hqvaenknf*fylsllqvlyc*cfmmnlvl*qylikttt
ttttttttieqinlkitiifftlief*kklgiqmlsffygihhqnamigqef*nlii**H
NNKLMIIIIKNLYLLQQHQQLLILILVVEVVLVLVVEVVLVLVVEVVLVEVEVVVEVVVL
VVEVVVLVVEVVVQLVVEGSSTTSRSSSTTG---

---VSTNIGYYTPQFVSMKGLGDPYLCQ*e*ryl*elf*s**slypngmgqainil*sen
y**escgnn*wiqfryskdirwswcg*tmcgysmf*ilqeytqrfmvtcccgv*l**frc
skeschflykwcv*crv**f*tn*n**lpfgnw*iw*kn*inklswyd**yndl*ylsnl
**yqictlfktksfhl*ick*sstll*frl*sk*skit*s*yss**inl*k*wylc*wfk
**lf*knnfnk*rnif**kiikk*n*****
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfl*ysllkkkq*hiii*iffkfkiiylkqhnrnnsyi*ly*iqididiink*iniyky
iyl*iyickyinik*nvyqi*hqvaenknf*fylsllqvlyc*cfmmnlvl*qylikttt
ttttttttieqinlkitiifftlief*kklgiqmlsffygihhqnamigqef*nlii**H
NNKLMIIIIKNLYLLQQHQQLLILILVVEVVLVLVVEVVLVLVVEVVLVEVEVVVEVVVL
VVEVVVLVVEVVVQLVVEGSSTTSRSSSTTG---

---cfnqywilytpicvnerig*pislsigmkilvrivlilmiiip*whgsshqhslire
llirimreqlvdtisifkrhqvvvvwldyvrvqhvlnpsrvyptiyghmllwclvvii*m
fkrivslfi*mvclmqsliilnqlklmtslw*lvnlvkklnqqvimv*lmi**slisl*p
lmisnmyslqnqifpplnlqmifnsfmisiiiqiiqnhmivi*fvinqfikmmvpllvvq
vmtilkk*lq*vkkylliknykkikliiiii

Frame B:
fyfysilf*kknnnillfeyfsnlklfi*nnttetihiynyiryk*i*i**ink*iyini
yiykyifvni*i*nemyikynik*qktkifnfiypcckfyivdvl**i*fynsi**rqqq
qqqqqqql*nksi*r*r*yflh*snfrrn*efrcchfsmgsiirtr*ldrnfki**fsnt
ttn**l***kifiyfnninnfssly***k*y*y***k*y*y***k*y*wr*k**wr**y*
*wr**y**wk**yn***kvvvplvevvvll---

---VSTNIGYYTPQFVSMKGLGDPYLCQ*e*ryl*elf*s**slypngmgqainil*sen
y**escgnn*wiqfryskdirwswcg*tmcgysmf*ilqeytqrfmvtcccgv*l**frc
skeschflykwcv*crv**f*tn*n**lpfgnw*iw*kn*inklswyd**yndl*ylsnl
**yqictlfktksfhl*ick*sstll*frl*sk*skit*s*yss**inl*k*wylc*wfk
**lf*knnfnk*rnif**kiikk*n*****

Frame C:
fifivfsfkkktityyylnifqi*nylfkttqqkqfiyiiildtnryrynk*inkyi*iy
ifiniyl*iykykmkcisnitsssrkqkflilfilvassillmfydefsfitvfnkdnnn
nnnnnnnyrtnqfkdndnifytnrileetrnsdvviflwdpsserddwtgilksnnlvtq
qqiddynnkkslftsttsttshpytssrsststssrsststssrsstsggrsssggssts
sggsstssgsssttssrr**yh**k**yyw---

---fqpildiihpnlcq*kdwvthifvnrnedtckncfnlddhytlmawvkpstfsdqri
idknhagtisgynfdiqktsggrgvarlcagtacfesfksipndlwshvavvfscnnldv
qknrvtfyingvfnaefdnfkptkindfplvigksgkktestsyhgmiddimifnislts
ddikyvlsskpnlstfkfandlqlfydfdynpnnpkshdrnivrdksiykndgtfasgss
ddysekitsiskeisfnkkl*knktnnnnn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10938-1 (Contig-U10938-1Q)
/CSM_Contig/Contig-U10938-1Q.Seq.d
         (1627 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Conti...  1396  0.0
Contig-U09255-1 (Contig-U09255-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U05909-1 (Contig-U05909-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13760-1 (Contig-U13760-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U13069-1 (Contig-U13069-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U11598-1 (Contig-U11598-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U06745-1 (Contig-U06745-1Q) /CSM_Contig/Conti...    38  0.029

>Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Contig-U10938-1Q.Seq.d
          Length = 1627

 Score = 1396 bits (704), Expect = 0.0
 Identities = 718/725 (99%)
 Strand = Plus / Plus

                                                                        
Query: 824  tgtttcaaccaatattggatattatacaccccaatttgtgtcaatgaaaggattgggtga 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  tgtttcaaccaatattggatattatacaccccaatttgtgtcaatgaaaggattgggtga 883

                                                                        
Query: 884  cccatatctttgtcaataggaatgaagatacttgtaagaattgttttaatcttgatgatc 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  cccatatctttgtcaataggaatgaagatacttgtaagaattgttttaatcttgatgatc 943

                                                                        
Query: 944  attataccctaatggcatgggtcaagccatcaacattctctgatcagagaattattgata 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  attataccctaatggcatgggtcaagccatcaacattctctgatcagagaattattgata 1003

                                                                        
Query: 1004 agaatcatgcgggaacaattagtggatacaatttcgatattcaaaagacatcaggtggtc 1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 agaatcatgcgggaacaattagtggatacaatttcgatattcaaaagacatcaggtggtc 1063

                                                                        
Query: 1064 gtggtgtggctagactatgtgcgggtacagcatgttttgaatccttcaagagtataccca 1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 gtggtgtggctagactatgtgcgggtacagcatgttttgaatccttcaagagtataccca 1123

                                                                        
Query: 1124 acgatttatggtcacatgttgctgtggtgtttagttgtaataatttagatgttcaaaaga 1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 acgatttatggtcacatgttgctgtggtgtttagttgtaataatttagatgttcaaaaga 1183

                                                                        
Query: 1184 atcgtgtcactttttatataaatggtgtgtttaatgcagagtttgataattttaaaccaa 1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 atcgtgtcactttttatataaatggtgtgtttaatgcagagtttgataattttaaaccaa 1243

                                                                        
Query: 1244 ctaaaattaatgacttccctttggtaattggtaaatctggtnnnnnnnctgaatcaacaa 1303
            |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 1244 ctaaaattaatgacttccctttggtaattggtaaatctggtaaaaaaactgaatcaacaa 1303

                                                                        
Query: 1304 gttatcatggtatgattgatgatataatgatctttaatatctctctaacctctgatgata 1363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 gttatcatggtatgattgatgatataatgatctttaatatctctctaacctctgatgata 1363

                                                                        
Query: 1364 tcaaatatgtactctcttcaaaaccaaatctttccacctttaaatttgcaaatgatcttc 1423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 tcaaatatgtactctcttcaaaaccaaatctttccacctttaaatttgcaaatgatcttc 1423

                                                                        
Query: 1424 aactcttttatgatttcgattataatccaaataatccaaaatcacatgatcgtaatatag 1483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 aactcttttatgatttcgattataatccaaataatccaaaatcacatgatcgtaatatag 1483

                                                                        
Query: 1484 ttcgtgataaatcaatttataaaaatgatggtacctttgctagtggttcaagtgatgact 1543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 ttcgtgataaatcaatttataaaaatgatggtacctttgctagtggttcaagtgatgact 1543

                 
Query: 1544 attct 1548
            |||||
Sbjct: 1544 attct 1548


 Score =  454 bits (229), Expect = e-127
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 384 tatagaacaaatcaatttaaagataacgataatattttttacactaatcgaattttagaa 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatagaacaaatcaatttaaagataacgataatattttttacactaatcgaattttagaa 443

                                                                       
Query: 444 gaaactaggaattcagatgttgtcatttttctatgggatccatcatcagaacgcgatgat 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaactaggaattcagatgttgtcatttttctatgggatccatcatcagaacgcgatgat 503

                                                                       
Query: 504 tggacaggaattttaaaatctaataatttagtaacacaacaacaaattgatgattataat 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggacaggaattttaaaatctaataatttagtaacacaacaacaaattgatgattataat 563

                                                            
Query: 564 aataaaaaatctttatttacttcaacaacatcaacaacttctcatcctt 612
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aataaaaaatctttatttacttcaacaacatcaacaacttctcatcctt 612


 Score =  214 bits (108), Expect = 2e-55
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 244 catcaagtagcagaaaacaaaaatttttaattttatttatccttgttgcaagttctatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 catcaagtagcagaaaacaaaaatttttaattttatttatccttgttgcaagttctatat 303

                                                           
Query: 304 tgttgatgttttatgatgaatttagttttataacagtatttaataaag 351
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgttgatgttttatgatgaatttagttttataacagtatttaataaag 351


 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  attttatttttatagtattctctttt 26
          ||||||||||||||||||||||||||
Sbjct: 1  attttatttttatagtattctctttt 26


 Score = 36.2 bits (18), Expect = 0.12
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 978 attctctgatcagagaat 995
           ||||||||||||||||||
Sbjct: 995 attctctgatcagagaat 978


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 95  acaacagaaacaattc 110
           ||||||||||||||||
Sbjct: 95  acaacagaaacaattc 110


>Contig-U09255-1 (Contig-U09255-1Q) /CSM_Contig/Contig-U09255-1Q.Seq.d
          Length = 499

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 260 acaaaaatttttaattttatttat 283
           |||||| |||||||||||||||||
Sbjct: 426 acaaaagtttttaattttatttat 403


 Score = 30.2 bits (15), Expect = 7.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 268 ttttaattttattta 282
           |||||||||||||||
Sbjct: 440 ttttaattttattta 426


>Contig-U05909-1 (Contig-U05909-1Q) /CSM_Contig/Contig-U05909-1Q.Seq.d
          Length = 793

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 559 ataataataaaaaatctttattta 582
           |||||||||| |||||||||||||
Sbjct: 136 ataataataacaaatctttattta 159


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,598
Number of Sequences: 6905
Number of extensions: 25598
Number of successful extensions: 3784
Number of sequences better than 10.0: 511
length of query: 1627
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1611
effective length of database: 5,564,391
effective search space: 8964233901
effective search space used: 8964233901
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Contig-U10938-1Q.Seq.d
         (1627 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ409048) Dictyostelium discoideum cDNA clone:dds47h21, 3' ...   837   0.0    2
(BJ350336) Dictyostelium discoideum cDNA clone:dda39c14, 3' ...   793   0.0    3
(BJ343796) Dictyostelium discoideum cDNA clone:dda17p03, 3' ...   793   0.0    3
(BJ385247) Dictyostelium discoideum cDNA clone:ddc54g08, 3' ...   787   0.0    3
(BJ348859) Dictyostelium discoideum cDNA clone:dda34i14, 3' ...   781   0.0    2
(BJ402597) Dictyostelium discoideum cDNA clone:dds17o08, 3' ...   777   0.0    2
(BJ348804) Dictyostelium discoideum cDNA clone:dda34n08, 3' ...   775   0.0    2
(BJ406351) Dictyostelium discoideum cDNA clone:dds35a03, 3' ...   765   0.0    2
(BJ355762) Dictyostelium discoideum cDNA clone:dda58k02, 3' ...   676   0.0    2
(BJ355990) Dictyostelium discoideum cDNA clone:dda58k20, 3' ...   634   0.0    2
(BJ355934) Dictyostelium discoideum cDNA clone:dda58o14, 3' ...   597   0.0    2
(BJ357234) Dictyostelium discoideum cDNA clone:dda62j21, 3' ...   517   0.0    2
(BJ357159) Dictyostelium discoideum cDNA clone:dda62l13, 3' ...   504   0.0    2
(BJ326612) Dictyostelium discoideum cDNA clone:dda17p03, 5' ...   456   e-167  2
(BJ331266) Dictyostelium discoideum cDNA clone:dda34i14, 5' ...   456   e-167  2
(BJ332545) Dictyostelium discoideum cDNA clone:dda39c14, 5' ...   444   e-164  4
(BJ397839) Dictyostelium discoideum cDNA clone:dds47h21, 5' ...   438   e-163  4
(BJ394398) Dictyostelium discoideum cDNA clone:dds35a03, 5' ...   430   e-160  4
(BJ339657) Dictyostelium discoideum cDNA clone:dda58k20, 5' ...   329   e-137  4
(BJ370491) Dictyostelium discoideum cDNA clone:ddc54g08, 5' ...   456   e-131  2
(BJ337781) Dictyostelium discoideum cDNA clone:dda58o14, 5' ...   303   e-127  4
(BJ356743) Dictyostelium discoideum cDNA clone:dda61f07, 3' ...   466   e-126  1
(BJ331223) Dictyostelium discoideum cDNA clone:dda34n08, 5' ...   391   e-121  2
(BJ369245) Dictyostelium discoideum cDNA clone:ddc49g23, 5' ...   280   e-118  4
(BJ338697) Dictyostelium discoideum cDNA clone:dda62l13, 5' ...   167   4e-71  3
(BJ338748) Dictyostelium discoideum cDNA clone:dda62j21, 5' ...    72   1e-09  2
(DH012371) Oryzias latipes Fosmid clone:GOLWFno96_n20, forwa...    38   0.040  2
(CW953164) TcB39.1_G01_SP6 Tribolium BAC library Tribolium c...    40   0.12   3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    42   0.15   11
(AC122286) Mus musculus BAC clone RP23-252F4 from chromosome...    44   0.38   6
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    38   0.51   6
(AM427616) Vitis vinifera contig VV78X119916.20, whole genom...    42   0.59   3
(BX640462) Zebrafish DNA sequence from clone CH211-153D8 in ...    48   1.1    1
(BX537162) Zebrafish DNA sequence from clone DKEY-9A20 in li...    48   1.1    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    48   1.1    1
(CR376768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   1.1    1
(FH527771) CHO_OF4726xm09r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.1    1
(DU038508) 21722 Tomato HindIII BAC Library Solanum lycopers...    48   1.1    1
(FG695682) G1144P330RK9.T0 Anolis carolinensis pooled normal...    48   1.1    1
(FG695634) G1144P330FK9.T0 Anolis carolinensis pooled normal...    48   1.1    1
(EY384411) CAXA5136.rev CAXA Helobdella robusta Subtracted L...    48   1.1    1
(EY377871) CAXA16955.rev CAXA Helobdella robusta Subtracted ...    48   1.1    1
(ER575621) 1093015810391 Global-Ocean-Sampling_GS-36-01-01-2...    38   1.4    3
(AL844509) Plasmodium falciparum chromosome 13.                    40   1.5    11
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    32   1.6    7
(AC130470) Homo sapiens chromosome 16 clone RP11-143P24, com...    38   2.0    4
(AC104641) Homo sapiens 3 BAC RP11-786O7 (Roswell Park Cance...    42   2.2    3
(DQ366745) Uncultured Prochlorococcus marinus clone HOT0M-9F...    40   2.3    3
(X16522) Dictyostelium discoiedeum AAC-rich mRNA (AAC11).          34   3.5    3
(CR388060) Zebrafish DNA sequence from clone DKEY-208J8 in l...    46   4.2    1
(BX931854) Gallus gallus finished cDNA, clone ChEST789c8.          46   4.2    1
(BX931171) Gallus gallus finished cDNA, clone ChEST584d23.         46   4.2    1
(BX927222) Zebrafish DNA sequence from clone CH211-256M12 in...    46   4.2    1
(CT009613) Mouse DNA sequence from clone RP23-55L9 on chromo...    46   4.2    1
(AC171335) Mus musculus BAC clone RP23-2K15 from chromosome ...    46   4.2    1
(AC140433) Mus musculus BAC clone RP23-96L16 from chromosome...    46   4.2    1
(AC121818) Mus musculus BAC clone RP23-459J16 from chromosom...    46   4.2    1
(AC136505) Medicago truncatula clone mth2-24f15, complete se...    46   4.2    1
(AC130105) Rattus norvegicus clone CH230-4C19, *** SEQUENCIN...    46   4.2    1
(AC097918) Rattus norvegicus clone CH230-14K5, *** SEQUENCIN...    46   4.2    1
(AC216641) Latimeria menadoensis clone VMRC4-97N21, *** SEQU...    46   4.2    1
(AC181763) Strongylocentrotus purpuratus clone R3-1036A17, W...    46   4.2    1
(AC180197) Strongylocentrotus purpuratus clone R3-3003M16, W...    46   4.2    1
(AC180165) Strongylocentrotus purpuratus clone R3-4003E15, W...    46   4.2    1
(ER611738) 1093016315184 Global-Ocean-Sampling_GS-36-01-01-2...    46   4.2    1
(EI315699) GM_WBc0048N10.r GM_WBc Glycine max genomic clone ...    46   4.2    1
(EG782163) EST_ssal_evd_38731 ssalevd thymus Salmo salar cDN...    46   4.2    1
(BU470400) 603362992F1 CSEQRBN21 Gallus gallus cDNA clone Ch...    46   4.2    1
(BU286130) 603604690F1 CSEQCHN55 Gallus gallus cDNA clone Ch...    46   4.2    1
(FG793546) G1148P311RA12.T0 Anolis carolinensis pooled norma...    46   4.2    1
(FG668115) G1143P32RE1.T0 Anolis carolinensis pooled normali...    46   4.2    1
(EV412112) 153-002-F05 Fundulus heteroclitus 153 Fundulus he...    46   4.2    1
(AC196924) Dasypus novemcinctus clone VMRC5-97G12, WORKING D...    44   5.2    5
(AC152348) Medicago truncatula clone mth2-52e17, complete se...    34   7.5    6
(AC016515) Homo sapiens clone RP11-16M19, WORKING DRAFT SEQU...    38   7.5    4
(CU292092) Equus caballus GSS, BAC clone CH241-454E19, T7 en...    36   9.1    2
(AX356494) Sequence 128 from Patent WO0181622.                     36   9.7    6
(AX347027) Sequence 2098 from Patent WO0200928.                    36   9.7    6

>(BJ409048) Dictyostelium discoideum cDNA clone:dds47h21, 3' end,
            single read.
          Length = 710

 Score =  837 bits (422), Expect(2) = 0.0
 Identities = 422/422 (100%)
 Strand = Plus / Minus


Query: 863  gtcaatgaaaggattgggtgacccatatctttgtcaataggaatgaagatacttgtaaga 922
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  gtcaatgaaaggattgggtgacccatatctttgtcaataggaatgaagatacttgtaaga 651


Query: 923  attgttttaatcttgatgatcattataccctaatggcatgggtcaagccatcaacattct 982
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  attgttttaatcttgatgatcattataccctaatggcatgggtcaagccatcaacattct 591


Query: 983  ctgatcagagaattattgataagaatcatgcgggaacaattagtggatacaatttcgata 1042
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  ctgatcagagaattattgataagaatcatgcgggaacaattagtggatacaatttcgata 531


Query: 1043 ttcaaaagacatcaggtggtcgtggtgtggctagactatgtgcgggtacagcatgttttg 1102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  ttcaaaagacatcaggtggtcgtggtgtggctagactatgtgcgggtacagcatgttttg 471


Query: 1103 aatccttcaagagtatacccaacgatttatggtcacatgttgctgtggtgtttagttgta 1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  aatccttcaagagtatacccaacgatttatggtcacatgttgctgtggtgtttagttgta 411


Query: 1163 ataatttagatgttcaaaagaatcgtgtcactttttatataaatggtgtgtttaatgcag 1222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410  ataatttagatgttcaaaagaatcgtgtcactttttatataaatggtgtgtttaatgcag 351


Query: 1223 agtttgataattttaaaccaactaaaattaatgacttccctttggtaattggtaaatctg 1282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  agtttgataattttaaaccaactaaaattaatgacttccctttggtaattggtaaatctg 291


Query: 1283 gt 1284
            ||
Sbjct: 290  gt 289

 Score =  466 bits (235), Expect(2) = 0.0
 Identities = 235/235 (100%)
 Strand = Plus / Minus


Query: 1292 ctgaatcaacaagttatcatggtatgattgatgatataatgatctttaatatctctctaa 1351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281  ctgaatcaacaagttatcatggtatgattgatgatataatgatctttaatatctctctaa 222


Query: 1352 cctctgatgatatcaaatatgtactctcttcaaaaccaaatctttccacctttaaatttg 1411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221  cctctgatgatatcaaatatgtactctcttcaaaaccaaatctttccacctttaaatttg 162


Query: 1412 caaatgatcttcaactcttttatgatttcgattataatccaaataatccaaaatcacatg 1471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161  caaatgatcttcaactcttttatgatttcgattataatccaaataatccaaaatcacatg 102


Query: 1472 atcgtaatatagttcgtgataaatcaatttataaaaatgatggtacctttgctag 1526
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101  atcgtaatatagttcgtgataaatcaatttataaaaatgatggtacctttgctag 47

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,387,497,476
Number of extensions: 90478142
Number of successful extensions: 7698707
Number of sequences better than 10.0: 81
Length of query: 1627
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1603
Effective length of database: 97,308,875,965
Effective search space: 155986128171895
Effective search space used: 155986128171895
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Contig-U10938-1Q.Seq.d
         (1627 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000875_1990(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    57   3e-06
CP001325_346(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    52   5e-05
CP001089_2883(CP001089|pid:none) Geobacter lovleyi SZ, complete ...    46   0.004
CP000300_1831(CP000300|pid:none) Methanococcoides burtonii DSM 6...    45   0.006
CP000685_2617(CP000685|pid:none) Flavobacterium johnsoniae UW101...    45   0.008
BA000016_1875(BA000016|pid:none) Clostridium perfringens str. 13...    43   0.038
AP007255_3422(AP007255|pid:none) Magnetospirillum magneticum AMB...    42   0.064
FJ236863_1(FJ236863|pid:none) Hydra magnipapillata nematoblast-s...    39   0.54
CP000875_1951(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    39   0.71
CP000607_417(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...    39   0.71
CP000806_698(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    38   0.93
CP000282_3307(CP000282|pid:none) Saccharophagus degradans 2-40, ...    37   2.1
CP000096_363(CP000096|pid:none) Pelodictyon luteolum DSM 273, co...    37   2.1
CP000777_2644(CP000777|pid:none) Leptospira biflexa serovar Pato...    37   2.7
CP001184_106(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    35   6.0
CP001322_2272(CP001322|pid:none) Desulfatibacillum alkenivorans ...    35   7.9
CP001251_1669(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,...    35   7.9
CP000300_794(CP000300|pid:none) Methanococcoides burtonii DSM 62...    35   7.9

>CP000875_1990(CP000875|pid:none) Herpetosiphon aurantiacus ATCC
            23779, complete genome.
          Length = 3907

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
 Frame = +1

Query: 931  NLDDHYTLMAWVKPSTFSD----QRIIDKNHAGTISGYNFDIQKTSGGRGVARLCAGTAC 1098
            NL + +T++AWVKP T +D    QR I      +++G+ F +  ++   G+     G
Sbjct: 2973 NLQNQFTILAWVKPDTITDTTSLQRFIAAGRDNSVNGFGFGLSGSALNFGI----FGGFK 3028

Query: 1099 FESFKSIPNDLWSHVAVVFSCNNLDVQKNRVTFYINGVFNAEFDNFKPTKI-NDFPLVIG 1275
            + S  ++   +W  VAVVF  +      N   FY++G +             ND PL IG
Sbjct: 3029 YSSSATVAPRVWQQVAVVFDAS------NDAKFYLDGEYIDTIAGSSAVPANNDDPLFIG 3082

Query: 1276 KSGKKTE--STSYHGMIDDIMIFNISLTSDDI 1365
             S  +    +  + G +D++ I+   L++ +I
Sbjct: 3083 ASTDQQGLFNDQFRGQLDELTIYQRELSTAEI 3114

 Score = 42.4 bits (98), Expect = 0.049
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
 Frame = +1

Query: 946  YTLMAWVKPSTFSDQRIIDKNHA------GTISGY-NFDIQKTSGGRGVARLCAGTACFE 1104
            +TL AWVK +T + Q II KN        G  S Y N + Q T  G        G
Sbjct: 1689 FTLAAWVK-TTSTKQAIITKNDGDSTWERGEKSFYINANGQPTFVG-------FGNNYIT 1740

Query: 1105 SFKSIPNDLWSHVAVVFSCNNLDVQKNRVTFYINGV--FNAEFDNFKPT---KINDFPLV 1269
            S +S+ +D W HVAV +   NL       T YI+G+   N    N++       ND  L
Sbjct: 1741 SNQSVNDDRWHHVAVEWDYPNL-----TGTIYIDGIDRTNRTSTNYRTNNRDNAND-TLK 1794

Query: 1270 IGK--SGKKTESTSYHGMIDDIMIFNISLTSDDIKYVLSSKPN 1392
            +G+  S     + ++ G++D++ +F+ +L +  I  ++  + N
Sbjct: 1795 VGRNNSNSNEAANNFKGLLDEVAVFDRTLGTAQINDLMQGRYN 1837

 Score = 41.6 bits (96), Expect = 0.084
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 7/184 (3%)
 Frame = +1

Query: 949  TLMAWVKPSTFSDQRIIDKNHA-GTISGY-NFDIQKTSGGRGVARLCAGTACFESFKSIP 1122
            T+ AWV  ++ +   + + N+A G    Y NF I     G   +    G A F     +P
Sbjct: 2659 TIAAWVNGNSGTIADLRNPNNATGLRLAYDNFLITIDLDGSTAS---GGNASFVVPFELP 2715

Query: 1123 NDLWSHVAVVFSCNNLDVQKNRVTFYINGVFNAEF-----DNFKPTKINDFPLVIGKSGK 1287
               WSHV       N D      T YING   A       +    +  + FP +    G
Sbjct: 2716 EGQWSHVVA-----NYDKTNQLATVYINGQLAASTALPGANGTHASLSSQFPTIGANQGD 2770

Query: 1288 KTESTSYHGMIDDIMIFNISLTSDDIKYVLSSKPNLSTFKFANDLQLFYDFDYNPNNPKS 1467
              +   Y G +DD+ I+ + L++  I+ +  +   +          L ++FD   N  +
Sbjct: 2771 GGDF--YRGYLDDLRIYQVVLSASQIQSLYKTSAPI----------LKFEFDEEQNTSEF 2818

Query: 1468 HDRN 1479
            HDR+
Sbjct: 2819 HDRS 2822

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,791,566,692
Number of extensions: 31476382
Number of successful extensions: 78030
Number of sequences better than 10.0: 18
Number of HSP's gapped: 77897
Number of HSP's successfully gapped: 32
Length of query: 542
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 408
Effective length of database: 611,592,589
Effective search space: 249529776312
Effective search space used: 249529776312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.99  gvh: 0.57  alm: 0.10  top: 0.37  tms: 0.13  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for Contig-U10938-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 9
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 1
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0