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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10937-1
Contig ID Contig-U10937-1
Contig update 2002.12.18
Contig sequence 
>Contig-U10937-1 (Contig-U10937-1Q) /CSM_Contig/Contig-U10937-1Q.Seq.d
TACTGATAGTTTAATATTATCCCCAAAACAACATAAAGGTGAAGATAGAA
AAAGAAATCATGAAATTTCATCAATTTCACCACCAAGATCAAGAGAAACT
ATTGGCCATGATGATGATGATAATAATGTTGATGTTATACCAAGACGACA
ATTTAATGAATTAGAAAAAGAATATAAAGAATTAAAACAAATGGATGAAA
CTCATAAACAATATATTGAATCATTAAAACTTCAAATTACACAATTGGAA
GAAAAAGTTAAAAAATCATCAAGTCATCCACGTTCATTATTACCTGGNAT
TCCTTCAAATATTAATGATTCACCAAAAGTAGTTTATACTAAATCTTCAA
TTACAAATGATAATAGTAGNTCTCATCATCAACANCAACANCAACAACAT
AATATATCACCATCAAATA----------ATGTTGANANTTTTGAANATC
CNATCCCATTAGAAATTTTAACATCACTAATGGATTCACCAAAATATAAT
CCTGATGAAAATATCTTATTGGATCTTTCAAAAATTTTCACTTTAAAATT
CATAAATTCAAATCAAACTTTATCATCCTCAACCTCTTCTGAAAATGATT
TAATGGCTACTATTAATTTAAATGCTTTAGAATCAGTTCAATATGCTTGT
GATGATTTAGTAAGTAATATTGTTAAAAAGAATATTGAAATTGTTTCTTT
AAATAATCAAAAATCAATTAAAAAATAATAAA
Gap gap included
Contig length 722
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2804339
End point 2803671
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U10937
List of clone(s) 

est1=AFI304F,1,420
est2=SHF763Z,421,623
est3=AFI304Z,441,724
Translated Amino Acid sequence 
TDSLILSPKQHKGEDRKRNHEISSISPPRSRETIGHDDDDNNVDVIPRRQFNELEKEYKE
LKQMDETHKQYIESLKLQITQLEEKVKKSSSHPRSLLPGIPSNINDSPKVVYTKSSITND
NSXSHHQXQXQQHNISPSN---

---VXXFEXPIPLEILTSLMDSPKYNPDENILLDLSKIFTLKFINSNQTLSSSTSSENDL
MATINLNALESVQYACDDLVSNIVKKNIEIVSLNNQKSIKK**
Translated Amino Acid sequence (All Frames) 
Frame A:
y**fniipktt*r*r*kkks*nfinfttkikrnywp******c*cytktti**irkri*r
iktng*ns*tiy*iiktsnytigrks*kiiksstfiitwxsfky**ftkssly*ifnyk*
***xssstxtxtt*yitik---

---mlxxlxixsh*kf*hh*wihqniilmkisywifqkfsl*ns*iqiklyhpqpllkmi
*wllli*ml*nqfnmlvmi**villkrilklfl*iiknqlknnk

Frame B:
TDSLILSPKQHKGEDRKRNHEISSISPPRSRETIGHDDDDNNVDVIPRRQFNELEKEYKE
LKQMDETHKQYIESLKLQITQLEEKVKKSSSHPRSLLPGIPSNINDSPKVVYTKSSITND
NSXSHHQXQXQQHNISPSN---

---c*xf*xsxpirnfnitngftki*s**kyligsfknfhfkihkfksnfiilnlf*k*f
ngyy*fkcfrissicl**fsk*yc*key*ncffk*skin*kii

Frame C:
liv*yypqnnikvkiekeimkfhqfhhqdqekllammmmiimlmlyqddnlmn*kknikn
*nkwmklinnilnh*nfklhnwkkklknhqvihvhyylxflqilmihqk*filnlqlqmi
ivxliinxnxnniiyhhqi---

---VXXFEXPIPLEILTSLMDSPKYNPDENILLDLSKIFTLKFINSNQTLSSSTSSENDL
MATINLNALESVQYACDDLVSNIVKKNIEIVSLNNQKSIKK**
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10937-1 (Contig-U10937-1Q)
/CSM_Contig/Contig-U10937-1Q.Seq.d
         (732 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10937-1 (Contig-U10937-1Q) /CSM_Contig/Conti...  1225  0.0
Contig-U06852-1 (Contig-U06852-1Q) /CSM_Contig/Conti...    52  9e-07
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U11937-1 (Contig-U11937-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U11681-1 (Contig-U11681-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U11450-1 (Contig-U11450-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U09541-1 (Contig-U09541-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U08922-1 (Contig-U08922-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U02490-1 (Contig-U02490-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U11728-1 (Contig-U11728-1Q) /CSM_Contig/Conti...    36  0.051

>Contig-U10937-1 (Contig-U10937-1Q) /CSM_Contig/Contig-U10937-1Q.Seq.d
          Length = 732

 Score = 1225 bits (618), Expect = 0.0
 Identities = 672/672 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgatagtttaatattatccccaaaacaacataaaggtgaagatagaaaaagaaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tactgatagtttaatattatccccaaaacaacataaaggtgaagatagaaaaagaaatca 60

                                                                       
Query: 61  tgaaatttcatcaatttcaccaccaagatcaagagaaactattggccatgatgatgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgaaatttcatcaatttcaccaccaagatcaagagaaactattggccatgatgatgatga 120

                                                                       
Query: 121 taataatgttgatgttataccaagacgacaatttaatgaattagaaaaagaatataaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taataatgttgatgttataccaagacgacaatttaatgaattagaaaaagaatataaaga 180

                                                                       
Query: 181 attaaaacaaatggatgaaactcataaacaatatattgaatcattaaaacttcaaattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attaaaacaaatggatgaaactcataaacaatatattgaatcattaaaacttcaaattac 240

                                                                       
Query: 241 acaattggaagaaaaagttaaaaaatcatcaagtcatccacgttcattattacctggnat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaattggaagaaaaagttaaaaaatcatcaagtcatccacgttcattattacctggnat 300

                                                                       
Query: 301 tccttcaaatattaatgattcaccaaaagtagtttatactaaatcttcaattacaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccttcaaatattaatgattcaccaaaagtagtttatactaaatcttcaattacaaatga 360

                                                                       
Query: 361 taatagtagntctcatcatcaacancaacancaacaacataatatatcaccatcaaatan 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taatagtagntctcatcatcaacancaacancaacaacataatatatcaccatcaaatan 420

                                                                       
Query: 421 nnnnnnnnnatgttgananttttgaanatccnatcccattagaaattttaacatcactaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 nnnnnnnnnatgttgananttttgaanatccnatcccattagaaattttaacatcactaa 480

                                                                       
Query: 481 tggattcaccaaaatataatcctgatgaaaatatcttattggatctttcaaaaattttca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggattcaccaaaatataatcctgatgaaaatatcttattggatctttcaaaaattttca 540

                                                                       
Query: 541 ctttaaaattcataaattcaaatcaaactttatcatcctcaacctcttctgaaaatgatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctttaaaattcataaattcaaatcaaactttatcatcctcaacctcttctgaaaatgatt 600

                                                                       
Query: 601 taatggctactattaatttaaatgctttagaatcagttcaatatgcttgtgatgatttag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taatggctactattaatttaaatgctttagaatcagttcaatatgcttgtgatgatttag 660

                       
Query: 661 taagtaatattg 672
           ||||||||||||
Sbjct: 661 taagtaatattg 672


>Contig-U06852-1 (Contig-U06852-1Q) /CSM_Contig/Contig-U06852-1Q.Seq.d
          Length = 408

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 373 tcatcatcaacancaacancaacaacataata 404
           |||||||||||| ||||| |||||||||||||
Sbjct: 173 tcatcatcaacaacaacaacaacaacataata 204


>Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Contig-U14510-1Q.Seq.d
          Length = 1389

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 108 atgatgatgatgataataatg 128
           |||||||||||||||||||||
Sbjct: 356 atgatgatgatgataataatg 376


 Score = 32.2 bits (16), Expect = 0.80
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 108 atgatgatgatgataataat 127
           |||||||||||||| |||||
Sbjct: 353 atgatgatgatgatgataat 372


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,841
Number of Sequences: 6905
Number of extensions: 16841
Number of successful extensions: 3201
Number of sequences better than 10.0: 379
length of query: 732
length of database: 5,674,871
effective HSP length: 16
effective length of query: 716
effective length of database: 5,564,391
effective search space: 3984103956
effective search space used: 3984103956
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U10937-1 (Contig-U10937-1Q) /CSM_Contig/Contig-U10937-1Q.Seq.d
         (732 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ326586) Dictyostelium discoideum cDNA clone:dda17h01, 5' ...   807   0.0    1
(BJ343761) Dictyostelium discoideum cDNA clone:dda17h01, 3' ...   416   e-112  1
(BJ406561) Dictyostelium discoideum cDNA clone:dds35n15, 3' ...   188   2e-43  1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    38   2e-06  10
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    42   4e-04  9
(C25756) Dictyostelium discoideum gamete cDNA, clone FC-AZ15.      58   5e-04  1
(BQ834829) Po_ad_03H09_TEXF1 Psoroptes ovis mixed Psoroptes ...    52   0.001  2
(AC150891) Medicago truncatula chromosome 2 clone mth2-76a9,...    38   0.003  7
(AM045490) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.005  2
(AM046662) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.005  2
(AC181553) Strongylocentrotus purpuratus clone R3-7G5, WORKI...    42   0.005  7
(AM045383) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.005  2
(AM045891) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.005  2
(AM043350) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.005  2
(AM044258) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.006  2
(AM044752) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.006  2
(AM047356) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.006  2
(AM045874) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.006  2
(AM047548) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.006  2
(AM047088) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.006  2
(AM048346) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.006  2
(DY889092) CeleSEQ6614 Cunninghamella elegans pBluescript (E...    40   0.006  2
(DY890753) CeleSEQ9979 Cunninghamella elegans pBluescript (E...    40   0.006  2
(DY890546) CeleSEQ9586 Cunninghamella elegans pBluescript (E...    40   0.006  2
(DY891964) CeleSEQ8835 Cunninghamella elegans pBluescript (E...    40   0.006  2
(AM048232) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.007  2
(AM045705) Schistosoma mansoni lung schistosomulum EST, clon...    46   0.007  2
(AC179512) Strongylocentrotus purpuratus clone R3-6A11, WORK...    54   0.008  1
(AC165428) Strongylocentrotus purpuratus BAC clone contig co...    42   0.008  11
(BJ412816) Dictyostelium discoideum cDNA clone:ddv9p21, 5' e...    38   0.016  3
(CU076078) Zebrafish DNA sequence from clone CH73-309L7 in l...    40   0.018  3
(AC176220) Strongylocentrotus purpuratus clone R3-3062G22, W...    42   0.018  5
(AP005848) Oryza sativa Japonica Group genomic DNA, chromoso...    42   0.020  5
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.021  8
(AC178902) Strongylocentrotus purpuratus clone R3-3114N15, W...    46   0.022  5
(EH014571) USDA-FP_187258 Lysiphlebus testaceipes adult whol...    40   0.024  3
(AU264829) Dictyostelium discoideum vegetative cDNA clone:VS...    36   0.026  3
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    36   0.027  6
(AL928741) Mouse DNA sequence from clone RP23-264P3 on chrom...    52   0.030  1
(Y10158) D.discoideum mRNA for STE20/pak kinase homologue.         52   0.030  1
(U67716) Dictyostelium discoideum myosin I heavy chain kinas...    52   0.030  1
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    52   0.030  1
(AL929173) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    52   0.030  1
(AC184339) Strongylocentrotus purpuratus clone R3-41J3, WORK...    52   0.030  1
(AC181277) Strongylocentrotus purpuratus clone R3-115K10, WO...    52   0.030  1
(AC180705) Strongylocentrotus purpuratus clone R3-3083N11, W...    52   0.030  1
(AC178143) Strongylocentrotus purpuratus clone R3-3078N5, WO...    52   0.030  1
(AC172376) Strongylocentrotus purpuratus clone R3-1004A11, W...    52   0.030  1
(EJ513773) 1095460159278 Global-Ocean-Sampling_GS-28-01-01-1...    52   0.030  1
(AU267132) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.030  1
(AC095737) Rattus norvegicus clone CH230-9B2, *** SEQUENCING...    40   0.034  5
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.041  9
(AU039061) Dictyostelium discoideum slug cDNA, clone SSM334.       36   0.049  3
(AU264828) Dictyostelium discoideum vegetative cDNA clone:VS...    36   0.057  3
(CR450803) Zebrafish DNA sequence from clone DKEY-11O18 in l...    42   0.058  5
(AC023456) Homo sapiens chromosome 15, clone RP11-162P24, co...    40   0.061  7
(AC112626) Rattus norvegicus clone CH230-304H11, *** SEQUENC...    42   0.068  3
(BJ365669) Dictyostelium discoideum cDNA clone:ddc36n01, 5' ...    36   0.075  3
(BJ418976) Dictyostelium discoideum cDNA clone:ddv34l13, 5' ...    36   0.076  3
(BJ422153) Dictyostelium discoideum cDNA clone:ddv45d05, 5' ...    36   0.078  3
(BJ416733) Dictyostelium discoideum cDNA clone:ddv27j02, 5' ...    36   0.079  3
(FG693118) G1144P35RM20.T0 Anolis carolinensis pooled normal...    40   0.087  2
(AC172412) Strongylocentrotus purpuratus clone R3-14G11, WOR...    44   0.090  6
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.097  16
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    34   0.11   19
(DQ192033) Stizostedion vitreum vitreum putative calpain-lik...    50   0.12   1
(AC120945) Rattus norvegicus clone CH230-285A15, WORKING DRA...    50   0.12   1
(AC112444) Rattus norvegicus clone CH230-231H24, WORKING DRA...    50   0.12   1
(AC192871) Pan troglodytes chromosome X clone CH251-495F12, ...    50   0.12   1
(AC168348) Strongylocentrotus purpuratus clone R3-56O12, WOR...    50   0.12   1
(DU932726) 358830 Tomato EcoRI BAC Library Solanum lycopersi...    50   0.12   1
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    44   0.12   8
(AC178827) Strongylocentrotus purpuratus clone R3-29G18, WOR...    38   0.12   6
(AC112731) Rattus norvegicus clone CH230-74H2, WORKING DRAFT...    42   0.18   6
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.19   12
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   0.22   9
(BJ429412) Dictyostelium discoideum cDNA clone:ddv3l07, 3' e...    38   0.26   2
(BX255938) Mouse DNA sequence from clone RP23-333B5 on chrom...    40   0.26   2
(AC201147) Strongylocentrotus purpuratus clone R3-14E11, WOR...    44   0.26   6
(EY390039) CAXA852.rev CAXA Helobdella robusta Subtracted La...    46   0.28   2
(AC125938) Rattus norvegicus clone CH230-11B3, *** SEQUENCIN...    42   0.28   6
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    40   0.28   17
(AL591111) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    46   0.29   3
(L34219) Homo sapiens retinaldehyde-binding protein (CRALBP)...    44   0.30   2
(CT096804) Sus scrofa genomic clone PigE-191I3, genomic surv...    46   0.31   2
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    34   0.31   16
(AC176445) Strongylocentrotus purpuratus clone R3-3068D24, W...    40   0.32   4
(EY366317) CAXA10666.rev CAXA Helobdella robusta Subtracted ...    46   0.32   2
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    42   0.32   4
(FG701485) G1144P347FM15.T0 Anolis carolinensis pooled norma...    40   0.33   2
(AC124068) Homo sapiens chromosome 15, clone RP11-217B1, com...    44   0.33   4
(AZ547010) ENTFU87TR Entamoeba histolytica Sheared DNA Entam...    36   0.34   2
(CU141618) Equus caballus GSS, BAC clone CH241-265H19, T7 en...    34   0.34   2
(BZ519125) BOMSB44TR BO_2_3_KB Brassica oleracea genomic clo...    34   0.35   2
(CU030782) Equus caballus GSS, BAC clone CH241-123M7, T7 end...    34   0.35   2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    40   0.35   5
(AF038919) Dictyostelium discoideum PslA (pslA) gene, comple...    46   0.35   2
(AC120707) Rattus norvegicus clone CH230-42A18, *** SEQUENCI...    42   0.36   3
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    34   0.41   17
(DY887446) CeleSEQ3774 Cunninghamella elegans pBluescript (E...    36   0.42   3

>(BJ326586) Dictyostelium discoideum cDNA clone:dda17h01, 5' end,
           single read.
          Length = 420

 Score =  807 bits (407), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Plus


Query: 1   tactgatagtttaatattatccccaaaacaacataaaggtgaagatagaaaaagaaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tactgatagtttaatattatccccaaaacaacataaaggtgaagatagaaaaagaaatca 60


Query: 61  tgaaatttcatcaatttcaccaccaagatcaagagaaactattggccatgatgatgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgaaatttcatcaatttcaccaccaagatcaagagaaactattggccatgatgatgatga 120


Query: 121 taataatgttgatgttataccaagacgacaatttaatgaattagaaaaagaatataaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taataatgttgatgttataccaagacgacaatttaatgaattagaaaaagaatataaaga 180


Query: 181 attaaaacaaatggatgaaactcataaacaatatattgaatcattaaaacttcaaattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attaaaacaaatggatgaaactcataaacaatatattgaatcattaaaacttcaaattac 240


Query: 241 acaattggaagaaaaagttaaaaaatcatcaagtcatccacgttcattattacctggnat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaattggaagaaaaagttaaaaaatcatcaagtcatccacgttcattattacctggnat 300


Query: 301 tccttcaaatattaatgattcaccaaaagtagtttatactaaatcttcaattacaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccttcaaatattaatgattcaccaaaagtagtttatactaaatcttcaattacaaatga 360


Query: 361 taatagtagntctcatcatcaacancaacancaacaacataatatatcaccatcaaata 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taatagtagntctcatcatcaacancaacancaacaacataatatatcaccatcaaata 419

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 926,099,583
Number of extensions: 63229793
Number of successful extensions: 6491104
Number of sequences better than 10.0: 1005
Length of query: 732
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 708
Effective length of database: 97,308,875,965
Effective search space: 68894684183220
Effective search space used: 68894684183220
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10937-1 (Contig-U10937-1Q) /CSM_Contig/Contig-U10937-1Q.Seq.d
         (732 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54696) RecName: Full=Myosin-H heavy chain; AltName: Full=Myosi...   256   5e-67
EU362919_22(EU362919|pid:none) Bacillus thuringiensis strain INT...    39   0.22
AM920435_1487(AM920435|pid:none) Penicillium chrysogenum Wiscons...    38   0.37
CR382400_57(CR382400|pid:none) Plasmodium falciparum chromosome ...    37   0.48
AL844505_224(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.48
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso...    37   0.48
AF365926_1(AF365926|pid:none) Aspergillus nidulans calmodulin-bi...    37   0.63
AK293592_1(AK293592|pid:none) Homo sapiens cDNA FLJ54594 complet...    37   0.82
U58886_1(U58886|pid:none) Mus musculus endophilin I mRNA, comple...    37   0.82
BC032825_1(BC032825|pid:none) Homo sapiens SH3-domain GRB2-like ...    37   0.82
AK302273_1(AK302273|pid:none) Homo sapiens cDNA FLJ52941 complet...    37   0.82
AL805970_1(AL805970|pid:none) Mouse DNA sequence from clone RP23...    37   0.82
AK139337_1(AK139337|pid:none) Mus musculus 10 days neonate corte...    37   0.82
(Q62420) RecName: Full=Endophilin-A1; AltName: Full=Endophilin-1...    37   0.82
AL805970_5(AL805970|pid:none) Mouse DNA sequence from clone RP23...    37   0.82
(O35179) RecName: Full=Endophilin-A1; AltName: Full=Endophilin-1...    37   0.82
AL163002_9(AL163002|pid:none) Arabidopsis thaliana DNA chromosom...    36   1.1
CR548612_278(CR548612|pid:none) Paramecium tetraurelia macronucl...    36   1.4
AE014187_245(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.8
AK220377_1(AK220377|pid:none) Mus musculus mRNA for mKIAA1243 pr...    35   1.8
FM992689_737(FM992689|pid:none) Candida dubliniensis CD36 chromo...    35   3.1
X92946_23(X92946|pid:none) Lactococcus lactis sp. lactis plasmid...    35   3.1
AB169310_1(AB169310|pid:none) Macaca fascicularis testis cDNA, c...    35   3.1
EF568108_126(EF568108|pid:none) Glossina pallidipes salivary gla...    35   3.1
(Q5VQ09) RecName: Full=Armadillo repeat-containing kinesin-like ...    35   3.1
(Q5A368) RecName: Full=Lysophospholipase NTE1;          EC=3.1.1...    35   3.1
BC090960_1(BC090960|pid:none) Mus musculus hook homolog 3 (Droso...    32   3.9
(Q8BUK6) RecName: Full=Protein Hook homolog 3;  &AK145149_1(AK14...    32   3.9
BC060772_1(BC060772|pid:none) Homo sapiens chondroitin sulfate N...    34   4.1
AB046636_1(AB046636|pid:none) Macaca fascicularis brain cDNA, cl...    34   4.1
AB081516_1(AB081516|pid:none) Homo sapiens beta4GalNAcT mRNA for...    34   4.1
CU928168_665(CU928168|pid:none) Kluyveromyces thermotolerans str...    34   4.1
AC117072_64(AC117072|pid:none) Dictyostelium discoideum chromoso...    34   4.1
AK055154_1(AK055154|pid:none) Homo sapiens cDNA FLJ30592 fis, cl...    34   4.1
(Q6S003) RecName: Full=Kinesin-related protein 8; AltName: Full=...    34   4.1
(Q8TDX6) RecName: Full=Chondroitin sulfate N-acetylgalactosaminy...    34   4.1
AK137723_1(AK137723|pid:none) Mus musculus adult female vagina c...    32   4.1
AJ609591_1(AJ609591|pid:none) Mytilus edulis mRNA for heavy meta...    34   5.3
AF278764_1(AF278764|pid:none) Plasmodium falciparum flap endonuc...    34   5.3
AL844504_216(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.3
(Q9FJL0) RecName: Full=Structural maintenance of chromosomes pro...    34   5.3
(P83425) RecName: Full=Heavy metal-binding protein HIP;                34   5.3
AB211496_1(AB211496|pid:none) Campylobacter lari plasmid pCL300,...    34   5.3
(Q49XE1) RecName: Full=Nuclease sbcCD subunit C;  &AP008934_1411...    34   5.3
AF251290_1(AF251290|pid:none) Plasmodium falciparum glutamic aci...    34   5.3
AM270325_89(AM270325|pid:none) Aspergillus niger contig An14c018...    33   6.9
AF034856_1(AF034856|pid:none) Drosophila melanogaster EF-hand pr...    33   6.9
CP001230_1347(CP001230|pid:none) Persephonella marina EX-H1, com...    33   6.9
AF082864_1(AF082864|pid:none) Streptococcus pyogenes strain CL29...    33   6.9
BT043580_1(BT043580|pid:none) Salmo salar clone HM4_2667 suppres...    33   6.9
(P13492) Antigen 10-3 precursor.  &A31561(A31561) &M22346_1(M223...    33   6.9
U22017_1(U22017|pid:none) Mycoplasma hominis 93 P120 (p120) gene...    33   6.9
AY888447_1(AY888447|pid:none) Synthetic construct Homo sapiens c...    33   6.9
AE014296_3136(AE014296|pid:none) Drosophila melanogaster chromos...    33   6.9
T23384(T23384)hypothetical protein K07A1.10 - Caenorhabditis ele...    33   6.9
BT059049_1(BT059049|pid:none) Salmo salar clone ssal-rgf-522-306...    33   6.9
AF044203_1(AF044203|pid:none) Drosophila melanogaster calcium bi...    33   6.9
AJ248283_257(AJ248283|pid:none) Pyrococcus abyssi complete genom...    33   9.0
AY815133_1(AY815133|pid:none) Schistosoma japonicum SJCHGC05620 ...    33   9.0
AP007170_136(AP007170|pid:none) Aspergillus oryzae RIB40 genomic...    33   9.0
(Q8BJQ9) RecName: Full=Chondroitin sulfate N-acetylgalactosaminy...    33   9.0
CP001399_2678(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    33   9.0
EU258200_141(EU258200|pid:none) Spodoptera frugiperda MNPV isola...    33   9.0
(A0PK00) RecName: Full=Transmembrane protein 120B;  &AK126568_1(...    33   9.0
DQ132750_1(DQ132750|pid:none) Arabidopsis thaliana clone 01957 e...    33   9.0
CP001400_2549(CP001400|pid:none) Sulfolobus islandicus M.14.25, ...    33   9.0
CP001404_2785(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...    33   9.0
BC160629_1(BC160629|pid:none) Danio rerio DEAD (Asp-Glu-Ala-Asp)...    33   9.0
BX571657_230(BX571657|pid:none) Wolinella succinogenes, complete...    33   9.0
AK144089_1(AK144089|pid:none) Mus musculus bladder RCB-0544 MBT-...    33   9.0
AM502239_115(AM502239|pid:none) Leishmania infantum chromosome 21.     33   9.0

>(P54696) RecName: Full=Myosin-H heavy chain; AltName: Full=Myosin-5a;
          Length = 2359

 Score =  256 bits (654), Expect = 5e-67
 Identities = 129/139 (92%), Positives = 129/139 (92%)
 Frame = +2

Query: 2    TDSLILSPKQHKGEDRKRNHEISSISPPRSRETIGHDDDDNNVDVIPRRQFNELEKEYKE 181
            TDSLILSPKQHKGEDRKRNHEISSISPPRSRETIGHDDDDNNVDVIPRRQFNELEKEYKE
Sbjct: 1133 TDSLILSPKQHKGEDRKRNHEISSISPPRSRETIGHDDDDNNVDVIPRRQFNELEKEYKE 1192

Query: 182  LKQMDETHKQYIESLKLQITQLEEKVKKSSSHPRSLLPGIPSNINDSPKVVYTKSSITND 361
            LKQMDETHKQYIESLKLQITQLEEKVKKSSSHPRSLLPGIPSNINDSPKVVYTKSSITND
Sbjct: 1193 LKQMDETHKQYIESLKLQITQLEEKVKKSSSHPRSLLPGIPSNINDSPKVVYTKSSITND 1252

Query: 362  NSXSXXXXXXXXXNISPSN 418
            NS S         NISPSN
Sbjct: 1253 NSSSHHQQQQQQHNISPSN 1271

 Score =  117 bits (294), Expect = 3e-25
 Identities = 61/76 (80%), Positives = 61/76 (80%)
 Frame = +3

Query: 432  VXXFEXPIPLEILTSLMDSPKYNPDENILLDLSKIFTLKFIXXXXXXXXXXXXENDLMAT 611
            V  FE PIPLEILTSLMDSPKYNPDENILLDLSKIFTLKFI            ENDLMAT
Sbjct: 1674 VDSFEDPIPLEILTSLMDSPKYNPDENILLDLSKIFTLKFINSNQTLSSSTSSENDLMAT 1733

Query: 612  INLNALESVQYACDDL 659
            INLNALESVQYACDDL
Sbjct: 1734 INLNALESVQYACDDL 1749

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 732,455,463
Number of extensions: 10763941
Number of successful extensions: 43937
Number of sequences better than 10.0: 71
Number of HSP's gapped: 43781
Number of HSP's successfully gapped: 75
Length of query: 244
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 119
Effective length of database: 640,431,154
Effective search space: 76211307326
Effective search space used: 76211307326
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.20  gvh: 0.26  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 44.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U10937-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0