| Contig-U10913-1 |
| Contig ID |
Contig-U10913-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1275 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
2117604 |
| End point |
2118866 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U10913 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.22 |
| Homology vs DNA |
Query= Contig-U10913-1 (Contig-U10913-1Q) /CSM_Contig/Contig-U10913-1Q.Seq.d
(1285 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ326521) Dictyostelium discoideum cDNA clone:dda16e20, 5' ... 1041 0.0 2
(BJ408051) Dictyostelium discoideum cDNA clone:dds44e17, 3' ... 1025 0.0 1
(BJ343667) Dictyostelium discoideum cDNA clone:dda16e20, 3' ... 965 0.0 1
(CR855257) Zebrafish DNA sequence from clone DKEY-149I7. 52 0.053 1
(CR974568) Mouse DNA sequence from clone RP23-39N20 on chrom... 52 0.053 1
(AC114652) Mus musculus chromosome 18, clone RP24-156O17, co... 52 0.053 1
(AC165232) Mus musculus chromosome 7 clone RP23-110G24 map 7... 52 0.053 1
(AC023110) Homo sapiens BAC clone RP11-204H9 from 4, complet... 42 0.085 6
(AL954710) Mouse DNA sequence from clone RP23-275J10 on chro... 50 0.21 1
(EF647605) Solanum lycopersicum chromosome 9 clone C09HBa016... 50 0.21 1
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 50 0.21 1
(EV834585) TT1D712TH Tetrahymena thermophila SB210 cDNA libr... 34 0.31 3
(AC182568) Mimulus guttatus clone MGBa-56M3, WORKING DRAFT S... 38 0.36 7
(AE017308) Mycoplasma mobile 163K complete genome. 36 0.39 18
(AC122946) Rattus norvegicus clone CH230-280K6, WORKING DRAF... 42 0.43 4
(AC212623) Solanum lycopersicum chromosome 7 clone C07HBa006... 46 0.44 7
(AC199300) Spermophilus tridecemlineatus clone VMRC20-512K17... 42 0.48 2
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 34 0.49 22
(BJ413615) Dictyostelium discoideum cDNA clone:ddv16k09, 5' ... 32 0.50 3
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 36 0.58 20
(DU934734) 361594 Tomato EcoRI BAC Library Solanum lycopersi... 36 0.69 3
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 32 0.75 10
(BJ413203) Dictyostelium discoideum cDNA clone:ddv14g17, 5' ... 32 0.80 3
(CU151888) Zebrafish DNA sequence from clone CH211-208J14. 48 0.83 1
(BX957357) Zebrafish DNA sequence from clone DKEY-98L21 in l... 48 0.83 1
(BX927334) Zebrafish DNA sequence from clone CH211-112H5 in ... 48 0.83 1
(AC134535) Mus musculus BAC clone RP24-371E20 from chromosom... 48 0.83 1
(DQ672601) Lycopersicon esculentum cultivar Ailsa Craig leuc... 48 0.83 1
(AP010264) Solanum lycopersicum DNA, chromosome 8, clone: C0... 48 0.83 1
(AP010258) Solanum lycopersicum DNA, chromosome 8, clone: C0... 48 0.83 1
(AP009520) Solanum lycopersicum DNA, chromosome 8, clone: C0... 48 0.83 1
(AC119741) Homo sapiens 3 BAC RP11-570O24 (Roswell Park Canc... 48 0.83 1
(AC137005) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 48 0.83 1
(AC123241) Rattus norvegicus clone CH230-12N13, *** SEQUENCI... 48 0.83 1
(AC123122) Rattus norvegicus clone CH230-17H14, *** SEQUENCI... 48 0.83 1
(AC219618) Bos taurus clone CH240-327J14, WORKING DRAFT SEQU... 48 0.83 1
(AC023450) Homo sapiens chromosome 14 clone RP11-472I3 map 1... 48 0.83 1
(BH334646) CH230-202M14.TJ CHORI-230 Segment 1 Rattus norveg... 48 0.83 1
(AZ844424) 2M0143K10R Mouse 10kb plasmid UUGC1M library Mus ... 48 0.83 1
(EK414086) 1095506062409 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.83 1
(CC504594) CH240_344F23.TARBAC13P2 CHORI-240 Bos taurus geno... 48 0.83 1
(DW098482) CLPY9515.b1_F04.ab1 CLP(XYZ) lettuce perennis Lac... 48 0.83 1
(DW097796) CLPY8823.b1_N22.ab1 CLP(XYZ) lettuce perennis Lac... 48 0.83 1
(AE017245) Mycoplasma synoviae 53, complete genome. 48 0.83 1
(BJ411732) Dictyostelium discoideum cDNA clone:ddv5h15, 5' e... 32 0.90 3
(BJ415344) Dictyostelium discoideum cDNA clone:ddv22c10, 5' ... 32 1.0 3
(DQ508223) Pardosa digitaliformis voucher EH7 16S ribosomal ... 36 1.1 2
(DQ508222) Pardosa digitaliformis voucher EH3 16S ribosomal ... 36 1.1 2
(DQ508221) Pardosa digitaliformis voucher EH1 16S ribosomal ... 36 1.1 2
(AC121596) Mus musculus BAC clone RP23-299I20 from 14, compl... 46 1.4 3
(DU068387) 135409 Tomato HindIII BAC Library Solanum lycoper... 46 1.4 2
(DU021188) 744 Tomato HindIII BAC Library Solanum lycopersic... 46 1.4 2
(BJ416149) Dictyostelium discoideum cDNA clone:ddv25j02, 5' ... 32 1.5 3
(AC165678) Bos taurus clone CH240-166B23, WORKING DRAFT SEQU... 32 1.7 2
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 32 1.7 8
(AC154834) Mus musculus BAC clone RP24-573L8 from chromosome... 34 1.7 2
(AC118790) Rattus norvegicus clone CH230-471D1, *** SEQUENCI... 42 1.7 5
(AC217389) Pongo abelii chromosome UNKNOWN clone CH276-519C1... 36 2.0 8
(DB298355) Homo sapiens cDNA clone BRACE3000214, 3' end, mRN... 36 2.3 2
(CU019631) Zebrafish DNA sequence from clone CH211-78P4 in l... 40 2.3 4
(BJ329075) Dictyostelium discoideum cDNA clone:dda30m15, 5' ... 32 2.4 2
(BJ388827) Dictyostelium discoideum cDNA clone:dds16k10, 5' ... 32 2.4 2
(AC090393) Homo sapiens chromosome 18, clone RP11-738B2, com... 36 2.7 7
(ER548332) 1093016199934 Global-Ocean-Sampling_GS-35-01-01-1... 38 3.0 2
(BJ362905) Dictyostelium discoideum cDNA clone:ddc24a06, 5' ... 30 3.0 3
(EU124730) Solanum lycopersicum chromosome 3 clone C03HBa000... 38 3.2 7
(BX470166) Zebrafish DNA sequence from clone CH211-238N5 in ... 46 3.3 1
(BX469889) Zebrafish DNA sequence from clone DKEY-156P3 in l... 46 3.3 1
(AC139110) Danio rerio strain Tue clone CH211-154N18, comple... 46 3.3 1
(AL845368) Mouse DNA sequence from clone RP23-206D14 on chro... 46 3.3 1
(AC164436) Mus musculus BAC clone RP23-134C5 from chromosome... 46 3.3 1
(AC161606) Mus musculus BAC clone RP23-232M18 from chromosom... 46 3.3 1
(AC140186) Mus musculus BAC clone RP24-363G9 from chromosome... 46 3.3 1
(AC132245) Mus musculus BAC clone RP24-420M8 from chromosome... 46 3.3 1
(AC074224) Mus musculus strain C57BL6/J chromosome 2 clone R... 46 3.3 1
(EU124743) Solanum lycopersicum chromosome 3 clone C03HBa000... 46 3.3 1
(CU326380) S.lycopersicum DNA sequence from clone LE_HBa-75M... 46 3.3 1
(AP009515) Solanum lycopersicum DNA, chromosome 8, clone: C0... 46 3.3 1
(AP009263) Solanum lycopersicum genomic DNA, chromosome 8, c... 46 3.3 1
(AM454952) Vitis vinifera contig VV78X180804.9, whole genome... 46 3.3 1
(AC226020) Solanum lycopersicum chromosome 6 clone C06SLm012... 46 3.3 1
(AC225117) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 46 3.3 1
(AC225023) Solanum lycopersicum chromosome 1 clone C01HBa015... 46 3.3 1
(AC219219) Solanum lycopersicum chromosome 6 clone C06SLe013... 46 3.3 1
(AC216296) Solanum lycopersicum DNA sequence from clone LE_H... 46 3.3 1
(AC215429) Solanum lycopersicum chromosome 2 clone C02HBa022... 46 3.3 1
(AC215403) Solanum lycopersicum chromosome 2 clone C02HBa016... 46 3.3 1
(AC209587) Solanum lycopersicum DNA sequence from clone LE_H... 46 3.3 1
(CS604816) Sequence 3802 from Patent WO2007039234. 46 3.3 1
(AL513305) Human DNA sequence from clone RP11-415H9 on chrom... 46 3.3 1
(AL356142) Human DNA sequence from clone RP11-765C10 on chro... 46 3.3 1
(AL109947) Human DNA sequence from clone RP5-919F19 on chrom... 46 3.3 1
(AC138512) Homo sapiens chromosome 16 clone RP11-93B18, comp... 46 3.3 1
(AC134312) Homo sapiens chromosome 16 clone RP11-863P13, com... 46 3.3 1
(AC040904) Homo sapiens chromosome 17, clone RP11-619I22, co... 46 3.3 1
(AC034192) Homo sapiens chromosome 3 clone RP11-416N8 map 3p... 46 3.3 1
(AC157600) Mus musculus chromosome 16 clone RP23-143H15, WOR... 46 3.3 1
(AC134284) Rattus norvegicus clone CH230-102H9, WORKING DRAF... 46 3.3 1
(AC132552) Rattus norvegicus clone CH230-199A4, WORKING DRAF... 46 3.3 1
(AC123442) Rattus norvegicus clone CH230-396P13, *** SEQUENC... 46 3.3 1
>(BJ326521) Dictyostelium discoideum cDNA clone:dda16e20, 5' end,
single read.
Length = 557
Score = 1041 bits (525), Expect(2) = 0.0
Identities = 531/531 (100%)
Strand = Plus / Plus
Query: 26 ttatttttaaactcaaatcacacacacaaatacatataaataaaaccatggttattaaag 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 ttatttttaaactcaaatcacacacacaaatacatataaataaaaccatggttattaaag 85
Query: 86 atttatcaccacacaataattcgttaagaaagaaatatttagatttaatagattatggta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 atttatcaccacacaataattcgttaagaaagaaatatttagatttaatagattatggta 145
Query: 146 ataaaaatcctttaacagttgatccaaatttataccaattaagaaaaaccatattattag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ataaaaatcctttaacagttgatccaaatttataccaattaagaaaaaccatattattag 205
Query: 206 aaggtttaccacccgaaaccgaagaagaaatagaagatagaaccaaacaagatggttcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aaggtttaccacccgaaaccgaagaagaaatagaagatagaaccaaacaagatggttcaa 265
Query: 266 aatgtagtttaagaggtatgatttggaaaatattattaggtgttgataaaatacaacctg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatgtagtttaagaggtatgatttggaaaatattattaggtgttgataaaatacaacctg 325
Query: 326 ataaatatatagaattaattgaaaaaggtccttcaaataggtatcaaaagattagaaaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ataaatatatagaattaattgaaaaaggtccttcaaataggtatcaaaagattagaaaag 385
Query: 386 atattggtagaacatttaatagggattcacaatttagtcaagcagtatcacaagatcaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atattggtagaacatttaatagggattcacaatttagtcaagcagtatcacaagatcaat 445
Query: 446 tatcaagatgtttaaatgcatttgcacatcaatgtgaagaattaggatatgttcaaggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatcaagatgtttaaatgcatttgcacatcaatgtgaagaattaggatatgttcaaggaa 505
Query: 506 tgaatgcaatttgtggnacatttttatatgttntaccagaggttgaggctt 556
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgaatgcaatttgtggnacatttttatatgttntaccagaggttgaggctt 556
Score = 32.2 bits (16), Expect(2) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 actgttggcctactgg 16
||||||||||||||||
Sbjct: 1 actgttggcctactgg 16
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,488,252,489
Number of extensions: 92577121
Number of successful extensions: 7890660
Number of sequences better than 10.0: 186
Length of query: 1285
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1261
Effective length of database: 97,308,875,965
Effective search space: 122706492591865
Effective search space used: 122706492591865
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.28 |
| Homology vs Protein |
Query= Contig-U10913-1 (Contig-U10913-1Q) /CSM_Contig/Contig-U10913-1Q.Seq.d
(1285 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(P36618) RecName: Full=Cell division control protein 16; &CU329... 131 4e-45
CR382131_405(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 130 5e-44
AM118080_127(AM118080|pid:none) Ustilago hordei mating type regi... 129 5e-41
(P26448) RecName: Full=Mitotic check point protein BUB2; AltName... 122 4e-38
CR382126_1128(CR382126|pid:none) Kluyveromyces lactis strain NRR... 124 1e-37
CP000496_215(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 120 2e-37
CU928166_172(CU928166|pid:none) Kluyveromyces thermotolerans str... 120 2e-37
FN392319_59(FN392319|pid:none) Pichia pastoris GS115 chromosome ... 118 1e-36
AE016817_531(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 116 4e-36
FM992689_257(FM992689|pid:none) Candida dubliniensis CD36 chromo... 118 2e-35
CR382139_175(CR382139|pid:none) Debaryomyces hansenii strain CBS... 117 4e-35
AM920437_2551(AM920437|pid:none) Penicillium chrysogenum Wiscons... 134 9e-30
CU633438_326(CU633438|pid:none) Podospora anserina genomic DNA c... 121 6e-27
(Q5F361) RecName: Full=TBC domain-containing protein kinase-like... 50 7e-13
BX537118_1(BX537118|pid:none) Zebrafish DNA sequence from clone ... 48 4e-12
(Q8TEA7) RecName: Full=TBC domain-containing protein kinase-like... 47 9e-12
BC068496_1(BC068496|pid:none) Homo sapiens TBC domain-containing... 47 9e-12
DQ893279_1(DQ893279|pid:none) Synthetic construct clone IMAGE:10... 47 9e-12
(Q8BM85) RecName: Full=TBC domain-containing protein kinase-like... 47 1e-11
AK041928_1(AK041928|pid:none) Mus musculus 3 days neonate thymus... 47 2e-09
BC096904_1(BC096904|pid:none) Danio rerio similar to CG4041-PA, ... 47 2e-07
Z72501_1(Z72501|pid:none) Caenorhabditis elegans Cosmid C04C11, ... 41 3e-07
Z78539_9(Z78539|pid:none) Caenorhabditis elegans Cosmid C31E10, ... 41 3e-07
AC115584_16(AC115584|pid:none) Dictyostelium discoideum chromoso... 52 4e-07
BC084964_1(BC084964|pid:none) Xenopus laevis hypothetical LOC495... 43 4e-07
AY136478_1(AY136478|pid:none) Arabidopsis thaliana plant adhesio... 46 5e-07
AL844508_72(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 40 7e-07
BC167441_1(BC167441|pid:none) Danio rerio si:ch211-198d18.2, mRN... 48 1e-06
AL935165_5(AL935165|pid:none) Zebrafish DNA sequence from clone ... 48 2e-06
AL590450_170(AL590450|pid:none) chromosome XI of strain GB-M1 of... 42 3e-06
FN357394_1(FN357394|pid:none) Schistosoma mansoni genome sequenc... 39 6e-06
FM992691_493(FM992691|pid:none) Candida dubliniensis CD36 chromo... 45 9e-06
AL844504_66(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 42 2e-05
AM502248_321(AM502248|pid:none) Leishmania infantum chromosome 30. 43 2e-05
AE014296_1575(AE014296|pid:none) Drosophila melanogaster chromos... 46 2e-05
CP001142_382(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 53 2e-05
BC043775_1(BC043775|pid:none) Xenopus laevis hypothetical protei... 45 3e-05
AK141520_1(AK141520|pid:none) Mus musculus adult male hippocampu... 42 3e-05
BC005421_1(BC005421|pid:none) Mus musculus TBC1 domain family, m... 42 3e-05
(Q9Z1A9) RecName: Full=TBC1 domain family member 8; AltName: Ful... 42 3e-05
AK162371_1(AK162371|pid:none) Mus musculus adult male epididymis... 42 3e-05
AB449889_1(AB449889|pid:none) Homo sapiens TBC1D8A mRNA for TBC1... 42 4e-05
CR382128_61(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 40 4e-05
(O95759) RecName: Full=TBC1 domain family member 8; AltName: Ful... 42 4e-05
AK292826_1(AK292826|pid:none) Homo sapiens cDNA FLJ76128 complet... 42 4e-05
AB024057_1(AB024057|pid:none) Homo sapiens mRNA for vascular Rab... 42 4e-05
AB017114_1(AB017114|pid:none) Homo sapiens mRNA for AD 3, partia... 42 4e-05
AY058542_1(AY058542|pid:none) Drosophila melanogaster LD24460 fu... 45 4e-05
AM494967_281(AM494967|pid:none) Leishmania braziliensis chromoso... 39 1e-04
(P53258) RecName: Full=GTPase-activating protein GYP2; AltName: ... 36 1e-04
CU928169_222(CU928169|pid:none) Kluyveromyces thermotolerans str... 39 1e-04
AE013599_16(AE013599|pid:none) Drosophila melanogaster chromosom... 41 2e-04
AE013599_17(AE013599|pid:none) Drosophila melanogaster chromosom... 41 2e-04
U67954_1(U67954|pid:none) Caenorhabditis elegans cosmid F41D9, c... 37 2e-04
AE014297_1363(AE014297|pid:none) Drosophila melanogaster chromos... 50 2e-04
AP007164_567(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 42 3e-04
(O43048) RecName: Full=TBC domain-containing protein C215.01; &... 38 7e-04
BC110738_1(BC110738|pid:none) Xenopus laevis hypothetical protei... 48 9e-04
(A6NI40) RecName: Full=TBC1 domain family member 3C-like protein... 47 0.001
FN357422_41(FN357422|pid:none) Schistosoma mansoni genome sequen... 41 0.001
BC078044_1(BC078044|pid:none) Xenopus laevis MGC82809 protein, m... 47 0.001
AJ719378_1(AJ719378|pid:none) Gallus gallus partial mRNA for hyp... 47 0.001
(P0C7X1) RecName: Full=TBC1 domain family member 3H; &(Q8IZP1) ... 47 0.002
AE017351_95(AE017351|pid:none) Cryptococcus neoformans var. neof... 47 0.002
AX775947_1(AX775947|pid:none) Sequence 217 from Patent WO03048202. 47 0.002
AK313329_1(AK313329|pid:none) Homo sapiens cDNA, FLJ93850, highl... 47 0.002
AK124772_1(AK124772|pid:none) Homo sapiens cDNA FLJ42782 fis, cl... 47 0.002
AK292308_1(AK292308|pid:none) Homo sapiens cDNA FLJ78248 complet... 47 0.002
BC160813_1(BC160813|pid:none) Rattus norvegicus TBC1 domain fami... 46 0.003
(Q5RAN1) RecName: Full=Rab GTPase-activating protein 1; AltName:... 46 0.003
BC071978_1(BC071978|pid:none) Homo sapiens TBC1 domain family, m... 46 0.003
T13163(T13163;T08800)Rab6 GTPase activating protein, GAPCenA - h... 46 0.003
(Q9Y3P9) RecName: Full=Rab GTPase-activating protein 1; AltName:... 46 0.003
AF318370_1(AF318370|pid:none) Homo sapiens pp8997 mRNA, complete... 46 0.003
AM270079_49(AM270079|pid:none) Aspergillus niger contig An04c018... 46 0.003
AB449882_1(AB449882|pid:none) Homo sapiens TBC1D2A mRNA for TBC1... 46 0.003
AY026527_1(AY026527|pid:none) Homo sapiens prostate antigen PARI... 46 0.003
AK298575_1(AK298575|pid:none) Homo sapiens cDNA FLJ56222 complet... 46 0.003
AJ011679_1(AJ011679|pid:none) Homo sapiens mRNA for Rab6 GTPase ... 46 0.003
AK220489_1(AK220489|pid:none) Mus musculus mRNA for mKIAA4104 pr... 46 0.003
AM270172_24(AM270172|pid:none) Aspergillus niger contig An08c017... 45 0.004
AP007157_441(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 45 0.004
AK095385_1(AK095385|pid:none) Homo sapiens cDNA FLJ38066 fis, cl... 45 0.004
AX775943_1(AX775943|pid:none) Sequence 213 from Patent WO03048202. 45 0.004
AL133332_1(AL133332|pid:none) Human DNA sequence from clone RP5-... 45 0.004
BC157165_1(BC157165|pid:none) Xenopus tropicalis hypothetical pr... 45 0.004
(O60447) RecName: Full=Ecotropic viral integration site 5 protei... 45 0.004
AB449884_1(AB449884|pid:none) Homo sapiens TBC1D3 mRNA for TBC1 ... 45 0.004
AF042345_1(AF042345|pid:none) Homo sapiens truncated EVI5 (EVI5)... 45 0.004
AK134294_1(AK134294|pid:none) Mus musculus 13 days embryo male t... 45 0.004
U41540_6(U41540|pid:none) Caenorhabditis elegans cosmid F35H12, ... 45 0.004
AE013599_1902(AE013599|pid:none) Drosophila melanogaster chromos... 39 0.004
AE013599_1904(AE013599|pid:none) Drosophila melanogaster chromos... 39 0.004
CU633899_494(CU633899|pid:none) Podospora anserina genomic DNA c... 36 0.006
BC122032_1(BC122032|pid:none) Xenopus tropicalis hypothetical pr... 45 0.006
(Q9BXI6) RecName: Full=TBC1 domain family member 10A; AltName: F... 45 0.006
AK093231_1(AK093231|pid:none) Homo sapiens cDNA FLJ35912 fis, cl... 45 0.006
BC168786_1(BC168786|pid:none) Xenopus tropicalis hypothetical pr... 45 0.006
BC150187_1(BC150187|pid:none) Homo sapiens TBC1 domain family, m... 45 0.006
BC129516_1(BC129516|pid:none) Xenopus laevis hypothetical protei... 45 0.006
BC143051_1(BC143051|pid:none) Synthetic construct Homo sapiens c... 45 0.006
AK071602_1(AK071602|pid:none) Oryza sativa Japonica Group cDNA c... 38 0.006
BC108645_1(BC108645|pid:none) Xenopus laevis hypothetical protei... 45 0.007
(P58802) RecName: Full=TBC1 domain family member 10A; AltName: F... 44 0.010
BC029773_1(BC029773|pid:none) Mus musculus TBC1 domain family, m... 44 0.010
AL807825_6(AL807825|pid:none) Mouse DNA sequence from clone RP23... 44 0.010
AK140872_1(AK140872|pid:none) Mus musculus 16 days embryo head c... 44 0.010
G89453(G89453)protein F35H12.2 [imported] - Caenorhabditis elegans 44 0.010
AB449913_1(AB449913|pid:none) Homo sapiens TBC1D26 mRNA for TBC1... 44 0.010
EF146951_1(EF146951|pid:none) Populus trichocarpa clone WS01225_... 44 0.010
(Q86UD7) RecName: Full=TBC1 domain family member 26; 44 0.010
AK131086_1(AK131086|pid:none) Homo sapiens mRNA for FLJ00288 pro... 44 0.012
BC051184_1(BC051184|pid:none) Mus musculus USP6 N-terminal like,... 44 0.013
AK099868_1(AK099868|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.013
BT038351_1(BT038351|pid:none) Zea mays full-length cDNA clone ZM... 44 0.013
(Q80XC3) RecName: Full=USP6 N-terminal-like protein; &AL845275_... 44 0.013
AL845275_4(AL845275|pid:none) Mouse DNA sequence from clone RP23... 44 0.013
BT084174_1(BT084174|pid:none) Zea mays full-length cDNA clone ZM... 44 0.013
(Q92738) RecName: Full=USP6 N-terminal-like protein; AltName: Fu... 44 0.013
D13644_1(D13644|pid:none) Homo sapiens mRNA for KIAA0019 protein... 44 0.013
BC129288_1(BC129288|pid:none) Danio rerio ecotropic viral integr... 44 0.013
BC149744_1(BC149744|pid:none) Bos taurus TBC1 domain family, mem... 44 0.016
T29104(T29104) Tbc1 protein - mouse &U33005_1(U33005|pid:none) 44 0.016
DQ415922_30(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com... 44 0.016
AK228688_1(AK228688|pid:none) Arabidopsis thaliana mRNA for puta... 44 0.016
(Q60949) RecName: Full=TBC1 domain family member 1; 44 0.016
AK168763_1(AK168763|pid:none) Mus musculus 16 days embryo kidney... 44 0.016
AL807577_18(AL807577|pid:none) Aspergillus fumigatus BAC AFA12F2. 44 0.016
AC021640_9(AC021640|pid:none) Arabidopsis thaliana chromosome II... 44 0.016
AL110485_2(AL110485|pid:none) Caenorhabditis elegans YAC Y46G5A,... 44 0.016
AK164923_1(AK164923|pid:none) Mus musculus 0 day neonate lung cD... 44 0.016
AL110485_3(AL110485|pid:none) Caenorhabditis elegans YAC Y46G5A,... 44 0.016
CU640366_1116(CU640366|pid:none) Podospora anserina genomic DNA ... 39 0.020
(Q755I4) RecName: Full=GTPase-activating protein GYP5; &AE01681... 37 0.026
(Q8IV04) RecName: Full=Carabin; AltName: Full=TBC1 domain family... 43 0.028
(Q96CN4) RecName: Full=EVI5-like protein; AltName: Full=Ecotropi... 42 0.036
AL356834_3(AL356834|pid:none) Neurospora crassa DNA linkage grou... 42 0.036
BC153970_1(BC153970|pid:none) Danio rerio hypothetical LOC566318... 42 0.036
BC142319_1(BC142319|pid:none) Bos taurus ecotropic viral integra... 42 0.036
CS300705_1(CS300705|pid:none) Sequence 213 from Patent EP1661986. 42 0.036
AC009259_7(AC009259|pid:none) Trypanosoma brucei chromosome 6 cl... 42 0.047
AY812490_1(AY812490|pid:none) Schistosoma japonicum SJCHGC05536 ... 42 0.048
CP000497_296(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 42 0.048
AB029031_1(AB029031|pid:none) Homo sapiens mRNA for KIAA1108 pro... 42 0.048
AK027355_1(AK027355|pid:none) Homo sapiens cDNA FLJ14449 fis, cl... 42 0.048
BC126979_1(BC126979|pid:none) Homo sapiens TBC1 (tre-2/USP6, BUB... 42 0.048
FN392319_221(FN392319|pid:none) Pichia pastoris GS115 chromosome... 42 0.048
AM270178_4(AM270178|pid:none) Aspergillus niger contig An08c0230... 42 0.048
AY893161_1(AY893161|pid:none) Synthetic construct Homo sapiens c... 42 0.048
AK220347_1(AK220347|pid:none) Mus musculus mRNA for mKIAA0603 pr... 42 0.048
AK172575_1(AK172575|pid:none) Mus musculus activated spleen cDNA... 42 0.048
BC014529_1(BC014529|pid:none) Homo sapiens TBC1 (tre-2/USP6, BUB... 42 0.048
BC053648_1(BC053648|pid:none) Homo sapiens TBC1 (tre-2/USP6, BUB... 42 0.048
AK304091_1(AK304091|pid:none) Homo sapiens cDNA FLJ50361 complet... 42 0.048
AE014296_1508(AE014296|pid:none) Drosophila melanogaster chromos... 42 0.048
AK295746_1(AK295746|pid:none) Homo sapiens cDNA FLJ61614 complet... 42 0.048
AF285112_1(AF285112|pid:none) Mus musculus unknown WZ3-85 mRNA, ... 42 0.062
AL683884_10(AL683884|pid:none) Mouse DNA sequence from clone RP2... 42 0.062
BX538351_33(BX538351|pid:none) Cryptosporidium parvum chromosome... 42 0.062
CR940347_825(CR940347|pid:none) Theileria annulata strain Ankara... 41 0.081
BC080640_1(BC080640|pid:none) Homo sapiens growth hormone regula... 41 0.081
CS072493_1(CS072493|pid:none) Sequence 241 from Patent WO2001042... 41 0.081
CS072492_1(CS072492|pid:none) Sequence 240 from Patent WO2001042... 41 0.081
AB449887_1(AB449887|pid:none) Homo sapiens TBC1D6 mRNA for TBC1 ... 41 0.081
AM920437_69(AM920437|pid:none) Penicillium chrysogenum Wisconsin... 41 0.081
BX284749_3(BX284749|pid:none) Neurospora crassa DNA linkage grou... 41 0.081
AE017350_147(AE017350|pid:none) Cryptococcus neoformans var. neo... 41 0.11
CR858503_1(CR858503|pid:none) Pongo abelii mRNA; cDNA DKFZp469M0... 41 0.11
CR749622_1(CR749622|pid:none) Homo sapiens mRNA; cDNA DKFZp779C0... 41 0.11
AK300468_1(AK300468|pid:none) Homo sapiens cDNA FLJ50736 complet... 41 0.11
(O60343) RecName: Full=TBC1 domain family member 4; AltName: Ful... 41 0.11
FM207107_1(FM207107|pid:none) Homo sapiens mRNA for TBC1 domain ... 41 0.11
FM207106_1(FM207106|pid:none) Homo sapiens mRNA for TBC1 domain ... 41 0.11
AL451013_2(AL451013|pid:none) Neurospora crassa DNA linkage grou... 37 0.12
(Q6PBU5) RecName: Full=Growth hormone-regulated TBC protein 1-A;... 40 0.14
BT052665_1(BT052665|pid:none) Medicago truncatula clone MTYFD_FE... 40 0.14
AB449895_1(AB449895|pid:none) Homo sapiens TBC1D10B mRNA for TBC... 40 0.18
BC050523_1(BC050523|pid:none) Homo sapiens TBC1 domain family, m... 40 0.18
BC063112_1(BC063112|pid:none) Homo sapiens TBC1 domain family, m... 40 0.18
BC098419_1(BC098419|pid:none) Homo sapiens TBC1 domain family, m... 40 0.18
G88391(G88391)protein R06B10.5 [imported] - Caenorhabditis elegans 40 0.18
AE014297_2233(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.18
(P35125) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 6; ... 40 0.18
BC168982_1(BC168982|pid:none) Rattus norvegicus TBC1 domain fami... 40 0.18
X63547_1(X63547|pid:none) H.sapiens mRNA for tre oncogene (clone... 40 0.18
BX538352_105(BX538352|pid:none) Cryptosporidium parvum chromosom... 40 0.18
FN357585_5(FN357585|pid:none) Schistosoma mansoni genome sequenc... 40 0.23
CU633897_134(CU633897|pid:none) Podospora anserina genomic DNA c... 40 0.24
FN392321_820(FN392321|pid:none) Pichia pastoris GS115 chromosome... 40 0.24
AP003271_10(AP003271|pid:none) Oryza sativa Japonica Group genom... 40 0.24
CR382137_67(CR382137|pid:none) Debaryomyces hansenii strain CBS7... 39 0.31
(O97790) RecName: Full=TBC1 domain family member 1; AltName: Ful... 39 0.31
BX323883_2(BX323883|pid:none) Zebrafish DNA sequence from clone ... 39 0.40
(Q9UUH7) RecName: Full=GTPase-activating protein gyp7; AltName: ... 35 0.43
BC073710_1(BC073710|pid:none) Xenopus laevis MGC83651 protein, m... 39 0.53
AF161420_1(AF161420|pid:none) Homo sapiens HSPC302 mRNA, partial... 38 0.69
BC160725_1(BC160725|pid:none) Xenopus laevis hypothetical protei... 30 0.73
AM502254_660(AM502254|pid:none) Leishmania infantum chromosome 36. 38 0.90
AL138659_12(AL138659|pid:none) Arabidopsis thaliana DNA chromoso... 34 0.95
AK117388_1(AK117388|pid:none) Arabidopsis thaliana At3g59570 mRN... 34 0.95
AL136221_9(AL136221|pid:none) Human DNA sequence from clone RP11... 37 1.2
BC112123_1(BC112123|pid:none) Homo sapiens growth hormone regula... 37 1.2
CP001323_331(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 37 1.2
CR382121_316(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 33 1.2
FN357519_9(FN357519|pid:none) Schistosoma mansoni genome sequenc... 37 1.5
AK295469_1(AK295469|pid:none) Homo sapiens cDNA FLJ60264 complet... 37 1.5
CR858652_1(CR858652|pid:none) Pongo abelii mRNA; cDNA DKFZp459D0... 37 1.5
CQ834574_1(CQ834574|pid:none) Sequence 445 from Patent WO2004058... 37 1.5
CQ834434_1(CQ834434|pid:none) Sequence 305 from Patent WO2004058... 37 1.5
AK000006_1(AK000006|pid:none) Homo sapiens mRNA for FLJ00006 pro... 37 1.5
AK301042_1(AK301042|pid:none) Homo sapiens cDNA FLJ53213 complet... 37 1.5
AK026127_1(AK026127|pid:none) Homo sapiens cDNA: FLJ22474 fis, c... 37 1.5
BT054291_1(BT054291|pid:none) Zea mays full-length cDNA clone ZM... 37 1.5
BT031268_1(BT031268|pid:none) Drosophila melanogaster LD42868 fu... 37 1.5
AE014298_714(AE014298|pid:none) Drosophila melanogaster chromoso... 37 1.5
FN392319_257(FN392319|pid:none) Pichia pastoris GS115 chromosome... 31 1.5
BC063206_1(BC063206|pid:none) Xenopus tropicalis TBC1 domain fam... 37 2.0
BC076966_1(BC076966|pid:none) Xenopus tropicalis TBC1 domain fam... 37 2.0
AK007905_1(AK007905|pid:none) Mus musculus 10 day old male pancr... 37 2.0
BT029973_1(BT029973|pid:none) Drosophila melanogaster IP18148 fu... 37 2.0
AK082863_1(AK082863|pid:none) Mus musculus ES cells cDNA, RIKEN ... 37 2.0
AM270336_37(AM270336|pid:none) Aspergillus niger contig An15c009... 33 2.5
AP007164_135(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 32 3.3
(Q09445) RecName: Full=Uncharacterized protein C04A2.1; &U23448... 36 3.4
AE014297_332(AE014297|pid:none) Drosophila melanogaster chromoso... 36 3.4
CT005272_628(CT005272|pid:none) Leishmania major strain Friedlin... 36 3.4
CP000587_123(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 36 3.4
BX649327_13(BX649327|pid:none) Zebrafish DNA sequence from clone... 36 3.4
(O94711) RecName: Full=GTPase-activating protein gyp2; &AL03456... 31 4.2
AY039546_1(AY039546|pid:none) Arabidopsis thaliana AT5g53570/MNC... 30 4.3
AB015476_10(AB015476|pid:none) Arabidopsis thaliana genomic DNA,... 30 4.3
BC127850_1(BC127850|pid:none) Homo sapiens small G protein signa... 35 4.4
AP008217_903(AP008217|pid:none) Oryza sativa (japonica cultivar-... 35 4.4
AM502254_659(AM502254|pid:none) Leishmania infantum chromosome 36. 35 4.4
FN357394_31(FN357394|pid:none) Schistosoma mansoni genome sequen... 35 4.4
AK221904_1(AK221904|pid:none) Arabidopsis thaliana mRNA for GTPa... 30 4.5
AM920435_1309(AM920435|pid:none) Penicillium chrysogenum Wiscons... 32 5.4
AL049956_1(AL049956|pid:none) Homo sapiens mRNA; cDNA DKFZp564J2... 30 5.8
(Q2KI13) RecName: Full=Small G protein signaling modulator 3; Al... 35 5.8
AP008210_598(AP008210|pid:none) Oryza sativa (japonica cultivar-... 35 5.8
AY056113_1(AY056113|pid:none) Arabidopsis thaliana AT3g55020/T15... 35 5.8
AP007155_1002(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 35 5.8
AL731623_9(AL731623|pid:none) Oryza sativa genomic DNA, chromoso... 35 5.8
BC108420_1(BC108420|pid:none) Mus musculus TBC1 domain family, m... 35 7.6
BC056467_1(BC056467|pid:none) Mus musculus TBC1 domain family, m... 35 7.6
CP000583_110(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 28 8.9
(Q09830) RecName: Full=TBC domain-containing protein C4G8.04; &... 32 9.0
FN357446_26(FN357446|pid:none) Schistosoma mansoni genome sequen... 28 9.2
EU957246_1(EU957246|pid:none) Zea mays clone 1586973 unknown mRNA. 34 9.9
BC125999_1(BC125999|pid:none) Xenopus laevis hypothetical protei... 34 9.9
FM992690_512(FM992690|pid:none) Candida dubliniensis CD36 chromo... 34 9.9
AK292544_1(AK292544|pid:none) Homo sapiens cDNA FLJ78711 complet... 34 9.9
>(P36618) RecName: Full=Cell division control protein 16;
&CU329670_1145(CU329670|pid:none) &S35315(S35315;T39042)
&X71605_1(X71605|pid:none) &Z98981_8(Z98981|pid:none)
Length = 299
Score = 131 bits (329), Expect(2) = 4e-45
Identities = 65/152 (42%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Frame = +3
Query: 567 EAFQCFYSLLTQCCPNYFTSNISGVNDASKLLDRILEFVDPELYEYLQNRSYHPLLFT-P 743
+AFQ F LL CP Y NI GV+ +KLLD+ LE +D LY YL ++ ++ P
Sbjct: 138 QAFQFFDRLLQNECPLYVLPNIDGVHRGAKLLDKCLEVLDHRLYTYLLSKGLTAKIYALP 197
Query: 744 PILSLGTATPPLDELLKLWDFFLAFGFHLNVICTISQILLMRDVLLVHQSPCLLFRSFPE 923
IL+L T PL E L +WDF A+G HLN++C I+Q+ + R+ L+ H SP L R+FP
Sbjct: 198 SILTLSACTAPLSEALTIWDFLFAYGIHLNILCVIAQMFIFREQLIDHPSPMTLLRTFPP 257
Query: 924 LDAPTIINLSIHIIRQLPDDIYDLLVDHPMTS 1019
L+A I+ ++I +I +LP ++Y+LL H S
Sbjct: 258 LNAKNIMKITILLISKLPPELYNLLARHAWDS 289
Score = 75.5 bits (184), Expect(2) = 4e-45
Identities = 40/93 (43%), Positives = 52/93 (55%)
Frame = +1
Query: 256 DGSKCSLRGMIWKILLGVDKIQPDKYIELIEKGPSNRYQKIRKDIGRTFNRDSQFSQAVS 435
+G S R +W +LL D+YI + +GPS QKI+ D+ RT +SQF VS
Sbjct: 40 EGGNSSTRPYVWAVLLNAPPRNADEYIRYVRQGPSPMAQKIQNDVSRTLVVESQFHSRVS 99
Query: 436 QDQLSRCLNAFAHQCEELGYVQGMNAICGTFLY 534
Q LSR LNA+ + L YVQGMN + FLY
Sbjct: 100 QSSLSRLLNAYVWKRGAL-YVQGMNVLASPFLY 131
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,503,800,745
Number of extensions: 26480909
Number of successful extensions: 73305
Number of sequences better than 10.0: 252
Number of HSP's gapped: 73161
Number of HSP's successfully gapped: 333
Length of query: 428
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 297
Effective length of database: 621,205,444
Effective search space: 184498016868
Effective search space used: 184498016868
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
1 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |