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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01717-1
Contig ID Contig-U01717-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U01717-1 (Contig-U01717-1Q) /CSM_Contig/Contig-U01717-1Q.Seq.d
GAATCATTAATTTCATGTTCAAATACAATAATGTCAAAATGGTTTCATTC
AAGAACTTTATCATTATGTATGGGAGTACTTGTTGGTTGGATTTATTCAG
CCAATTTCATCTCTCTAACTATATTACCATCAATTAAAAAACGTTTAGGA
TTTAAATTAAGTTTATGGATAATTTTCTTTATAGCTTTATTAGGTCTATC
TTTAAACATTCTTTATCTATTAATTAAAAATAATTTTAATGATATTAAAC
AATATCAATCAAATGAAGAAAAAGATAAATTATTAAATAATTATAATATT
AATAATAATATT----------AATTCAAGTACCAATTAGAATGTGGTTA
ATTGTTGGAATTGTATTTTTTGGATATACAGCATTATTTGGGTTGGCAAT
TATTGGACCTGATTTTTTAGGTCAAAAGTATGGTTTTAATGAATCCCGAG
CAGCATTAATTTTATCAAGTGAACATATAGTTAGTGCAACATTTTCACCA
ATTGTTGGGATATTAATAAAGAGATTTACAAAGAGAATACTTGTATTACT
GATATCATTGGTGATTATGATAATTGGGTTAACATTACTATTGACAACAA
ATGTTTATCCATTATGGTGGATTGTAATTTGTGGTATTGGTTATTCAATG
TTAAATACAACAATAGTTTCATCAATTCCAATCATTGCACCACAATCAAT
TATTGGTACATGTTATGGATTCATTGGAACTTCATATAATTGTGGTTTAA
TTGTGTTTCCATATTTACTTGGTTCATTAAAAGAATCATTTGGAAATTAT
AATATTTCAATTACAATTCTAATTGGTAATTGTATTATATCAATACTATT
ACTTTGTTTATTAAAATATTTTGATTTAAAAGAATCAATTTTAAATAAAA
GATTAGATAATTAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 919
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1914875
End point 1915795
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01717
List of clone(s) 

est1=SSF413F,1,313
est2=SSE285Z,314,905
est3=SSF413Z,318,921
Translated Amino Acid sequence 
ESLISCSNTIMSKWFHSRTLSLCMGVLVGWIYSANFISLTILPSIKKRLGFKLSLWIIFF
IALLGLSLNILYLLIKNNFNDIKQYQSNEEKDKLLNNYNINNNI---

---IQVPIRMWLIVGIVFFGYTALFGLAIIGPDFLGQKYGFNESRAALILSSEHIVSATF
SPIVGILIKRFTKRILVLLISLVIMIIGLTLLLTTNVYPLWWIVICGIGYSMLNTTIVSS
IPIIAPQSIIGTCYGFIGTSYNCGLIVFPYLLGSLKESFGNYNISITILIGNCIISILLL
CLLKYFDLKESILNKRLDN*kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ESLISCSNTIMSKWFHSRTLSLCMGVLVGWIYSANFISLTILPSIKKRLGFKLSLWIIFF
IALLGLSLNILYLLIKNNFNDIKQYQSNEEKDKLLNNYNINNNI---

---nsstn*nvvncwncifwiysiiwvgnywt*ffrskvwf**ipssinfik*tys*cni
ftncwdinkeiykentcitdiigdydnwvnitidnkclsimvdcnlwywlfnvkynnsfi
nsnhcttinywymlwihwnfi*lwfncvsiftwfikriiwkl*yfnynsnw*lyyintit
lfikif*fkrinfk*kir*lkkkkk

Frame B:
nh*fhvqiq*cqngfiqelyhyvweyllvgfiqpissl*lyyhqlknv*dln*vyg*fsl
*ly*vyl*tffiy*lkiilmilnninqmkkkiny*iiiiliii---

---IQVPIRMWLIVGIVFFGYTALFGLAIIGPDFLGQKYGFNESRAALILSSEHIVSATF
SPIVGILIKRFTKRILVLLISLVIMIIGLTLLLTTNVYPLWWIVICGIGYSMLNTTIVSS
IPIIAPQSIIGTCYGFIGTSYNCGLIVFPYLLGSLKESFGNYNISITILIGNCIISILLL
CLLKYFDLKESILNKRLDN*kkkkk

Frame C:
iinfmfkynnvkmvsfknfiimygstcwldlfsqfhlsnyitin*ktfri*ikfmdnfly
sfirsifkhslsin*k*f**y*tisik*rkr*iik*l*y***y---

---fkyqlecg*llelyfldiqhylgwqlldlif*vksmvlmnpeqh*fyqvni*lvqhf
hqllgy**rdlqreylyy*yhw*l**lg*hyy*qqmfihyggl*fvvlviqc*iqq*fhq
fqslhhnqllvhvmdslelhiivv*lcfhiylvh*knhleiiifqlqf*lvivlyqyyyf
vy*nili*knqf*ikd*iikkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01717-1 (Contig-U01717-1Q)
/CSM_Contig/Contig-U01717-1Q.Seq.d
         (929 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01717-1 (Contig-U01717-1Q) /CSM_Contig/Conti...  1170  0.0
Contig-U13064-1 (Contig-U13064-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U12115-1 (Contig-U12115-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11807-1 (Contig-U11807-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11691-1 (Contig-U11691-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U09041-1 (Contig-U09041-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U08914-1 (Contig-U08914-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U06628-1 (Contig-U06628-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U13891-1 (Contig-U13891-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U13067-1 (Contig-U13067-1Q) /CSM_Contig/Conti...    36  0.091

>Contig-U01717-1 (Contig-U01717-1Q) /CSM_Contig/Contig-U01717-1Q.Seq.d
          Length = 929

 Score = 1170 bits (590), Expect = 0.0
 Identities = 590/590 (100%)
 Strand = Plus / Plus

                                                                       
Query: 323 aattcaagtaccaattagaatgtggttaattgttggaattgtattttttggatatacagc 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattcaagtaccaattagaatgtggttaattgttggaattgtattttttggatatacagc 382

                                                                       
Query: 383 attatttgggttggcaattattggacctgattttttaggtcaaaagtatggttttaatga 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attatttgggttggcaattattggacctgattttttaggtcaaaagtatggttttaatga 442

                                                                       
Query: 443 atcccgagcagcattaattttatcaagtgaacatatagttagtgcaacattttcaccaat 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcccgagcagcattaattttatcaagtgaacatatagttagtgcaacattttcaccaat 502

                                                                       
Query: 503 tgttgggatattaataaagagatttacaaagagaatacttgtattactgatatcattggt 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgttgggatattaataaagagatttacaaagagaatacttgtattactgatatcattggt 562

                                                                       
Query: 563 gattatgataattgggttaacattactattgacaacaaatgtttatccattatggtggat 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gattatgataattgggttaacattactattgacaacaaatgtttatccattatggtggat 622

                                                                       
Query: 623 tgtaatttgtggtattggttattcaatgttaaatacaacaatagtttcatcaattccaat 682
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtaatttgtggtattggttattcaatgttaaatacaacaatagtttcatcaattccaat 682

                                                                       
Query: 683 cattgcaccacaatcaattattggtacatgttatggattcattggaacttcatataattg 742
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cattgcaccacaatcaattattggtacatgttatggattcattggaacttcatataattg 742

                                                                       
Query: 743 tggtttaattgtgtttccatatttacttggttcattaaaagaatcatttggaaattataa 802
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tggtttaattgtgtttccatatttacttggttcattaaaagaatcatttggaaattataa 802

                                                                       
Query: 803 tatttcaattacaattctaattggtaattgtattatatcaatactattactttgtttatt 862
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tatttcaattacaattctaattggtaattgtattatatcaatactattactttgtttatt 862

                                                             
Query: 863 aaaatattttgatttaaaagaatcaattttaaataaaagattagataatt 912
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aaaatattttgatttaaaagaatcaattttaaataaaagattagataatt 912


 Score =  543 bits (274), Expect = e-154
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatcattaatttcatgttcaaatacaataatgtcaaaatggtttcattcaagaacttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaatcattaatttcatgttcaaatacaataatgtcaaaatggtttcattcaagaacttta 60

                                                                       
Query: 61  tcattatgtatgggagtacttgttggttggatttattcagccaatttcatctctctaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcattatgtatgggagtacttgttggttggatttattcagccaatttcatctctctaact 120

                                                                       
Query: 121 atattaccatcaattaaaaaacgtttaggatttaaattaagtttatggataattttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atattaccatcaattaaaaaacgtttaggatttaaattaagtttatggataattttcttt 180

                                                                       
Query: 181 atagctttattaggtctatctttaaacattctttatctattaattaaaaataattttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atagctttattaggtctatctttaaacattctttatctattaattaaaaataattttaat 240

                                             
Query: 241 gatattaaacaatatcaatcaaatgaagaaaaag 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 241 gatattaaacaatatcaatcaaatgaagaaaaag 274


>Contig-U13064-1 (Contig-U13064-1Q) /CSM_Contig/Contig-U13064-1Q.Seq.d
          Length = 880

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 851 actttgtttattaaaatat 869
           |||||||||||||||||||
Sbjct: 770 actttgtttattaaaatat 752


>Contig-U12115-1 (Contig-U12115-1Q) /CSM_Contig/Contig-U12115-1Q.Seq.d
          Length = 638

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 218 tattaattaaaaataattttaat 240
           ||||||| |||||||||||||||
Sbjct: 148 tattaataaaaaataattttaat 126


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,631
Number of Sequences: 8361
Number of extensions: 26631
Number of successful extensions: 3309
Number of sequences better than 10.0: 380
length of query: 929
length of database: 7,895,291
effective HSP length: 16
effective length of query: 913
effective length of database: 7,761,515
effective search space: 7086263195
effective search space used: 7086263195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 4
Homology vs DNA 
Query= Contig-U01717-1 (Contig-U01717-1Q) /CSM_Contig/Contig-U01717-1Q.Seq.d
         (929 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037781) Dictyostelium discoideum slug cDNA, clone SSE285.     1053   0.0    1
(C92984) Dictyostelium discoideum slug cDNA, clone SSF413.       1051   0.0    1
(AU072919) Dictyostelium discoideum slug cDNA, clone SSF413.      476   e-130  1
(BV602174) S216P6787FH10.T0 Masuku Pan troglodytes troglodyt...    52   0.039  1
(AC022538) Homo sapiens chromosome 10 clone RP11-420L7, comp...    52   0.039  1
(AC163021) Mus musculus chromosome 15, clone RP23-228E13, co...    50   0.15   1
(AC110196) Mus musculus chromosome 15, clone RP24-343E7, com...    50   0.15   1
(AC163011) Mus musculus chromosome 15 clone RP24-375G8 map 1...    50   0.15   1
(AZ362231) 1M0107E13F Mouse 10kb plasmid UUGC1M library Mus ...    50   0.15   1
(BX470118) Zebrafish DNA sequence from clone DKEY-207E22 in ...    40   0.54   6
(AC114876) Homo sapiens chromosome 3 clone RP11-728B21, comp...    48   0.61   1
(AC098481) Homo sapiens chromosome 3 clone RP11-349E16, comp...    48   0.61   1
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    36   1.00   8
(AC094467) Rattus norvegicus clone CH230-4A8, *** SEQUENCING...    34   1.2    2
(AC112895) Rattus norvegicus clone CH230-151H14, *** SEQUENC...    34   1.2    2
(AC209095) Populus trichocarpa clone ACSB1789-B05, complete ...    36   1.6    3
(AL671870) Mouse DNA sequence from clone RP23-204I23 on chro...    40   1.7    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1.9    12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    38   2.0    9
(AC091295) Mus musculus strain C57BL6/J chromosome 6 clone R...    40   2.0    5
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    42   2.1    5
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    36   2.2    6
(AC079382) Homo sapiens 3 BAC RP11-93B21 (Roswell Park Cance...    46   2.4    1
(AC026475) Homo sapiens chromosome 16 clone RP11-71H23, comp...    46   2.4    1
(AC016647) Homo sapiens chromosome 16 clone RP11-89G14, comp...    46   2.4    1
(CU861592) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.4    1
(AC078979) Homo sapiens chromosome 3 clone RP11-296N12, WORK...    46   2.4    1
(AC230114) Bos taurus clone CH240-521I11, WORKING DRAFT SEQU...    46   2.4    1
(EJ587694) 1092961028108 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.4    1
(EJ531458) 1092955231036 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.4    1
(EI894198) VUH1-73M22TR VUUBBa (VUH1) Vigna unguiculata geno...    46   2.4    1
(CL393966) ZMMBBb0217F06f ZMMBBb (HindIII) Zea mays subsp. m...    46   2.4    1
(AG444721) Mus musculus molossinus DNA, clone:MSMg01-327F08....    46   2.4    1
(BQ870462) QGD9B23.yg.ab1 QG_ABCDI lettuce salinas Lactuca s...    46   2.4    1
(EY257956) BF01018B1B01.f1 Normalized subtracted keck librar...    46   2.4    1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   2.5    8
(AX345926) Sequence 997 from Patent WO0200928.                     40   3.3    2
(CU861572) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.7    5
(AC232610) Choloepus hoffmanni clone CH281-163A12, WORKING D...    40   4.0    4
(AL049482) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    44   4.0    4
(AC170928) Bos taurus clone CH240-195M16, WORKING DRAFT SEQU...    32   4.6    2
(AC105600) Rattus norvegicus 4 BAC CH230-209E1 (Children's H...    40   4.6    4
(AC217698) Solanum tuberosum chromosome 1 clone RH050N11, **...    38   4.6    4
(AC130200) Medicago truncatula clone mth1-64n13, complete se...    44   4.7    7
(BP175138) Cryptomeria japonica mRNA, clone: CC2489R, 3'end,...    38   4.7    2
(BX957238) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   6.1    6
(EK278175) 1095462284704 Global-Ocean-Sampling_GS-31-01-01-1...    32   6.1    2
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    40   6.1    8
(CX588223) TTE00019575 Amplicon Express - Conjugative Form T...    32   6.1    2
(CC584046) CH240_380C6.TARBAC13P2 CHORI-240 Bos taurus genom...    32   6.1    2
(CX582352) TTE00020608 Amplicon Express - Conjugative Form T...    32   6.1    2
(AM663784) Entamoeba moshkovskii FIC GSS, clone mosh026e10.p1k.    34   6.2    2
(CX591253) TTE00015882 Amplicon Express - Conjugative Form T...    32   6.3    2
(CX588071) TTE00015801 Amplicon Express - Conjugative Form T...    32   6.3    2
(DY681328) TTEA108THD Tetrahymena thermophila EST library, c...    32   6.3    2
(DY681127) TTEA108THC Tetrahymena thermophila EST library, c...    32   6.3    2
(DY680680) TTEA022THD Tetrahymena thermophila EST library, c...    32   6.3    2
(DY680678) TTEA022THC Tetrahymena thermophila EST library, c...    32   6.3    2
(DY680599) TTEA022T1V Tetrahymena thermophila EST library, c...    32   6.3    2
(DY682076) TTEA208T1V Tetrahymena thermophila EST library, c...    32   6.3    2
(DY681395) TTEA122T1V Tetrahymena thermophila EST library, c...    32   6.3    2
(CK573053) 103 Plasmodium yoelii liver stage LCM cDNA librar...    34   6.3    2
(CX577550) TTE00016884 Amplicon Express - Conjugative Form T...    32   6.3    2
(DY682105) TTEAC32THC Tetrahymena thermophila EST library, c...    32   6.4    2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   6.5    13
(AF134170) Dictyostelium discoideum retrotransposon TRE3-B, ...    38   6.6    3
(EJ789264) 1093017368616 Global-Ocean-Sampling_GS-30-02-01-1...    36   6.9    3
(AC118065) Rattus norvegicus clone CH230-378J21, *** SEQUENC...    38   7.0    7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   7.2    13
(ER412915) 1095388056147 Global-Ocean-Sampling_GS-34-01-01-1...    40   7.3    2
(AM476222) Vitis vinifera contig VV78X256195.9, whole genome...    34   7.5    4
(AC198210) Zea mays chromosome 7 clone CH201-256P10; ZMMBBc0...    38   7.6    5
(CC403459) PUHPS67TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    34   7.6    2
(CU798649) A BAC library has been constructed from PN40024 g...    36   7.7    3
(AM453634) Vitis vinifera contig VV78X139371.8, whole genome...    40   8.3    3
(AC168694) Strongylocentrotus purpuratus clone R3-3014H9, WO...    40   9.0    6
(BX936387) Zebrafish DNA sequence from clone CH211-245M11 in...    44   9.5    1
(BX890624) Zebrafish DNA sequence from clone DKEY-9I9 in lin...    44   9.5    1
(BX571825) Zebrafish DNA sequence from clone DKEY-158E13 in ...    44   9.5    1
(AC157275) Mus musculus BAC clone RP24-164M6 from chromosome...    44   9.5    1
(AC123948) Mus musculus BAC clone RP23-105C3 from chromosome...    44   9.5    1
(AC115288) Mus musculus BAC clone RP23-47P24 from 9, complet...    44   9.5    1
(AC021642) Mus musculus chromosome 10 clone  RP23-113O5, con...    44   9.5    1
(FJ429370) Carica papaya clone 75H06, complete sequence.           44   9.5    1
(AM458631) Vitis vinifera contig VV78X012087.14, whole genom...    44   9.5    1
(AM435161) Vitis vinifera contig VV78X112323.11, whole genom...    44   9.5    1
(AL161516) Arabidopsis thaliana DNA chromosome 4, contig fra...    44   9.5    1
(AC212433) Solanum lycopersicum chromosome 11 clone C11HBa00...    44   9.5    1
(AC210338) Populus trichocarpa clone POP066-N19, complete se...    44   9.5    1
(EU123848) Atyaephyra desmarestii voucher GU1173 16S ribosom...    44   9.5    1
(AL606463) Human DNA sequence from clone RP11-485D21 on chro...    44   9.5    1
(AL109984) Human DNA sequence from clone RP5-831D17 on chrom...    44   9.5    1
(AC109483) Homo sapiens chromosome 5 clone RP11-500H9, compl...    44   9.5    1
(AC091893) Homo sapiens chromosome 5 clone RP11-12P19, compl...    44   9.5    1
(AC087259) Homo sapiens 12p BAC RP11-387J7 (Roswell Park Can...    44   9.5    1
(AC073917) Homo sapiens 12q BAC RP11-415D21 (Roswell Park Ca...    44   9.5    1
(AC073532) Homo sapiens 12 BAC RP11-150F20 (Roswell Park Can...    44   9.5    1
(AC073504) Homo sapiens 12 BAC RP11-6C16 (Roswell Park Cance...    44   9.5    1
(AC156492) Bos taurus clone CH240-51E8, WORKING DRAFT SEQUEN...    44   9.5    1
(AC156122) Bos taurus clone CH240-47H2, WORKING DRAFT SEQUEN...    44   9.5    1
(AC152299) Bos taurus clone CH240-1K10, WORKING DRAFT SEQUEN...    44   9.5    1
(AC108691) Homo sapiens chromosome 12q clone RP11-817E3, WOR...    44   9.5    1
(AC087831) Homo sapiens chromosome 12 clone RP11-456O21, WOR...    44   9.5    1
(AC224989) Bos taurus clone CH240-46D12, WORKING DRAFT SEQUE...    44   9.5    1
(AC181439) Strongylocentrotus purpuratus clone R3-50L16, WOR...    44   9.5    1
(AC177582) Strongylocentrotus purpuratus clone R3-1025N4, WO...    44   9.5    1
(AC173043) Bos taurus clone CH240-98E10, WORKING DRAFT SEQUE...    44   9.5    1
(AC172512) Bos taurus clone CH240-302H19, WORKING DRAFT SEQU...    44   9.5    1
(AC025332) Homo sapiens chromosome 12 clone RP11-817E3 map 1...    44   9.5    1
(AC011577) Homo sapiens clone RP11-12P19, LOW-PASS SEQUENCE ...    44   9.5    1
(AC010775) Homo sapiens clone RP11-2G17, WORKING DRAFT SEQUE...    44   9.5    1
(AQ635484) RPCI-11-490H2.TV RPCI-11 Homo sapiens genomic clo...    44   9.5    1
(EK229367) 1095460172955 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.5    1
(EJ728586) 1092959717606 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.5    1
(EJ714776) 1092958535785 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.5    1
(DX994275) CHORI103-16L17.TJ CHORI103 Schistosoma mansoni ge...    44   9.5    1
(DE291589) Bombyx mori genomic DNA, BAC clone:BES_027_F16.         44   9.5    1
(CT026821) Arabidopsis thaliana T-DNA flanking sequence GK-9...    44   9.5    1
(CT026820) Arabidopsis thaliana T-DNA flanking sequence GK-9...    44   9.5    1
(CT026819) Arabidopsis thaliana T-DNA flanking sequence GK-9...    44   9.5    1
(CL038185) CH216-45E16_Sp6.1 CH216 Xenopus (Silurana) tropic...    44   9.5    1
(EL910491) INIT2_40_B08.b1_A006 G5 trophont cDNA (INIT2) Ich...    44   9.5    1
(EG030495) AH0873 Shanyou 523 Peanut Cotyledon cDNA Library ...    44   9.5    1
(EE126802) 1B65 Peanut (Luhua14) seeds full length cDNA Libr...    44   9.5    1
(DV736746) AOyst.F3M5.ful02.aa.A010c12 Pacific oyster 5X3 MP...    44   9.5    1
(DR758204) USDA-FP_118900-041 adult black-winged sharpshoote...    44   9.5    1
(DR757599) USDA-FP_118000-056 adult black-winged sharpshoote...    44   9.5    1
(DN473604) USDA-FP_147594 Adult sharpshooter leafhopper Onco...    44   9.5    1
(DN472999) USDA-FP_146989 Adult sharpshooter leafhopper Onco...    44   9.5    1
(DK968004) Papilio xuthus mRNA, clone: PxutEST_ftf04b12, 3' ...    44   9.5    1
(FG546614) NADI-aaa60g10.g1 Rhodnius_prolixus_EST_NADI_5th_i...    44   9.5    1
(FC906955) KN0AAQ8YI11RM1 IVIA1 Citrus clementina cDNA clone...    44   9.5    1
(EF442338) Chilo suppressalis haplotype hapl03 16S ribosomal...    30   10.0   3

>(AU037781) Dictyostelium discoideum slug cDNA, clone SSE285.
          Length = 592

 Score = 1053 bits (531), Expect = 0.0
 Identities = 533/534 (99%)
 Strand = Plus / Plus


Query: 323 aattcaagtaccaattagaatgtggttaattgttggaattgtattttttggatatacagc 382
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aattcaagtaccaattngaatgtggttaattgttggaattgtattttttggatatacagc 60


Query: 383 attatttgggttggcaattattggacctgattttttaggtcaaaagtatggttttaatga 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attatttgggttggcaattattggacctgattttttaggtcaaaagtatggttttaatga 120


Query: 443 atcccgagcagcattaattttatcaagtgaacatatagttagtgcaacattttcaccaat 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcccgagcagcattaattttatcaagtgaacatatagttagtgcaacattttcaccaat 180


Query: 503 tgttgggatattaataaagagatttacaaagagaatacttgtattactgatatcattggt 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgggatattaataaagagatttacaaagagaatacttgtattactgatatcattggt 240


Query: 563 gattatgataattgggttaacattactattgacaacaaatgtttatccattatggtggat 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gattatgataattgggttaacattactattgacaacaaatgtttatccattatggtggat 300


Query: 623 tgtaatttgtggtattggttattcaatgttaaatacaacaatagtttcatcaattccaat 682
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtaatttgtggtattggttattcaatgttaaatacaacaatagtttcatcaattccaat 360


Query: 683 cattgcaccacaatcaattattggtacatgttatggattcattggaacttcatataattg 742
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cattgcaccacaatcaattattggtacatgttatggattcattggaacttcatataattg 420


Query: 743 tggtttaattgtgtttccatatttacttggttcattaaaagaatcatttggaaattataa 802
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggtttaattgtgtttccatatttacttggttcattaaaagaatcatttggaaattataa 480


Query: 803 tatttcaattacaattctaattggtaattgtattatatcaatactattactttg 856
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatttcaattacaattctaattggtaattgtattatatcaatactattactttg 534

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,077,003,008
Number of extensions: 66435329
Number of successful extensions: 5707614
Number of sequences better than 10.0: 138
Length of query: 929
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 905
Effective length of database: 99,340,224,878
Effective search space: 89902903514590
Effective search space used: 89902903514590
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01717-1 (Contig-U01717-1Q) /CSM_Contig/Contig-U01717-1Q.Seq.d
         (929 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_20(AC117070|pid:none) Dictyostelium discoideum chromoso...   101   4e-20
AM502246_15(AM502246|pid:none) Leishmania infantum chromosome 28...    64   6e-09
AK024215_1(AK024215|pid:none) Homo sapiens cDNA FLJ14153 fis, cl...    62   2e-08
(Q9H3U5) RecName: Full=Major facilitator superfamily domain-cont...    62   2e-08
BC030542_1(BC030542|pid:none) Homo sapiens major facilitator sup...    62   2e-08
AF351617_1(AF351617|pid:none) Homo sapiens UG0581B09 mRNA, compl...    62   2e-08
AK294628_1(AK294628|pid:none) Homo sapiens cDNA FLJ60088 complet...    62   2e-08
AK297593_1(AK297593|pid:none) Homo sapiens cDNA FLJ56466 complet...    62   2e-08
AK301680_1(AK301680|pid:none) Homo sapiens cDNA FLJ53933 complet...    62   2e-08
CT005266_15(CT005266|pid:none) Leishmania major strain Friedlin,...    62   4e-08
(Q5R8G5) RecName: Full=Major facilitator superfamily domain-cont...    60   8e-08
AK075859_1(AK075859|pid:none) Mus musculus adult male tongue cDN...    54   8e-06
EU931180_1(EU931180|pid:none) Drosophila affinis CG8602-like pro...    52   2e-05
AB014732_1(AB014732|pid:none) Homo sapiens mRNA for SMAP-4, comp...    50   1e-04
AY223049_1(AY223049|pid:none) Schistosoma japonicum clone ZZD120...    49   2e-04
AY814063_1(AY814063|pid:none) Schistosoma japonicum SJCHGC00668 ...    49   2e-04
FN357294_43(FN357294|pid:none) Schistosoma mansoni genome sequen...    47   0.001
CP000478_3286(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    42   0.023
CP000139_1629(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    40   0.11
AM263198_1633(AM263198|pid:none) Listeria welshimeri serovar 6b ...    40   0.15
CP000490_1601(CP000490|pid:none) Paracoccus denitrificans PD1222...    39   0.19
CP001175_927(CP001175|pid:none) Listeria monocytogenes HCC23, co...    39   0.19
AE008384_3272(AE008384|pid:none) Methanosarcina mazei strain Goe...    39   0.19
AE015928_4377(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    39   0.25
CP001197_1091(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi...    39   0.25
AP008230_4749(AP008230|pid:none) Desulfitobacterium hafniense Y5...    38   0.56
BT045942_1(BT045942|pid:none) Salmo salar clone ssal-rgf-537-101...    37   0.73
CR522870_2323(CR522870|pid:none) Desulfotalea psychrophila LSv54...    37   0.73
AY316747_24(AY316747|pid:none) Rhizobium sp. NGR234 megaplasmid ...    36   1.6
CP000360_2480(CP000360|pid:none) Acidobacteria bacterium Ellin34...    36   1.6
CP001194_130(CP001194|pid:none) Rhizobium leguminosarum bv. trif...    35   2.8
CP000243_1599(CP000243|pid:none) Escherichia coli UTI89, complet...    35   3.6
CU928160_1369(CU928160|pid:none) Escherichia coli IAI1 chromosom...    35   3.6
AP009240_1489(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    35   3.6
CU928145_1509(CU928145|pid:none) Escherichia coli 55989 chromoso...    35   3.6
CU928163_1633(CU928163|pid:none) Escherichia coli UMN026 chromos...    35   3.6
(P76091) RecName: Full=Uncharacterized protein ynbB;  &AP009048_...    35   4.7
CU651637_1330(CU651637|pid:none) Escherichia coli LF82 chromosom...    35   4.7
CP001635_3443(CP001635|pid:none) Variovorax paradoxus S110 chrom...    35   4.7
CP000970_1700(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    35   4.7
AL935252_266(AL935252|pid:none) Lactobacillus plantarum strain W...    35   4.7
AE010299_1611(AE010299|pid:none) Methanosarcina acetivorans str....    34   6.2
AM181176_3789(AM181176|pid:none) Pseudomonas fluorescens SBW25 c...    34   6.2
CP000151_48(CP000151|pid:none) Burkholderia sp. 383 chromosome 1...    34   6.2
CP000076_3865(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c...    34   6.2
AM747720_3517(AM747720|pid:none) Burkholderia cenocepacia J2315 ...    34   6.2
CP000440_37(CP000440|pid:none) Burkholderia ambifaria AMMD chrom...    34   6.2
AP009385_22(AP009385|pid:none) Burkholderia multivorans ATCC 176...    34   8.1
CP000094_3638(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    34   8.1
AY534144_13(AY534144|pid:none) Saprolegnia ferax strain ATCC 360...    34   8.1
CP000949_2073(CP000949|pid:none) Pseudomonas putida W619, comple...    34   8.1

>AC117070_20(AC117070|pid:none) Dictyostelium discoideum chromosome
           2 map 2097701-2233941 strain AX4, complete sequence.
           &AC123513_15(AC123513|pid:none)
          Length = 517

 Score =  101 bits (251), Expect = 4e-20
 Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 1/192 (0%)
 Frame = +3

Query: 339 RMWLIVGIVFFGYTALFGLAIIGPDFLGQKYGFNESRAALILSSEHIVSATFSPIVG-IL 515
           R WL+  I FFGY  +FG AIIG D L  K+G++E +AA  +++E IV++      G  +
Sbjct: 288 RFWLLSLICFFGYLTMFGFAIIGTDVLKIKFGYDEKKAANYMAAEAIVNSILPIFTGWFI 347

Query: 516 IKRFTKRXXXXXXXXXXXXXXXXXXXXXNVYPLWWIVICGIGYSMLNTTXXXXXXXXXXX 695
           I    ++                     N  PL WI++CG+G+S LNTT
Sbjct: 348 INLRGRKIQIMAFASFLLGMGVLLLNVTNANPLPWIIMCGVGFSFLNTTLMSCVPLLVDM 407

Query: 696 XXXGTCYGFIGTSYNCGLIVFPYLLGSLKESFGNYXXXXXXXXXXXXXXXXXXXXXKYFD 875
              GT YG + T+YN  ++ FP LL  +K+S G+Y                     KY+D
Sbjct: 408 SIVGTAYGIVTTAYNINIMAFPPLLDYVKQSTGSYTISLAILSMSSVVTIMLLALLKYWD 467

Query: 876 LKESILNKRLDN 911
           L+   L++ LD+
Sbjct: 468 LQVP-LSQSLDS 478

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 1   ESLISCSNTIMSKWFHSRTLSLCMGVLVGWIYSANFISLTILPSIKKRLGFKLSLWII 174
           E L+SC+ T++  WF    + L MG L   IY  N  SL +LP I+   G + + W I
Sbjct: 54  EMLLSCAATMVPMWFLPNEIPLAMGALYSIIYWGNLASLLVLPRIRASFGLEAAFWFI 111

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,179,268,319
Number of extensions: 21682656
Number of successful extensions: 51357
Number of sequences better than 10.0: 51
Number of HSP's gapped: 51318
Number of HSP's successfully gapped: 52
Length of query: 309
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 181
Effective length of database: 636,901,312
Effective search space: 115279137472
Effective search space used: 115279137472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.66  alm: 0.11  top: 0.63  tms: 0.40  mit: 0.36  mip: 0.09
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U01717-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0