Contig-U10902-1 |
Contig ID |
Contig-U10902-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
5136 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
2228450 |
End point |
2233592 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
38 |
Number of EST |
64 |
Link to clone list |
U10902 |
List of clone(s) |
est1=AHJ748F,-3,592 est2=SHE595F,103,770 est3=SHE263F,214,827 est4=AHQ479F,526,1105 est5=AHN449F,639,1105 est6=AHL236F,733,1362 est7=AHN251F,810,1322 est8=AHL669F,867,1488 est9=SHG595F,891,1516 est10=AHM294F,1080,1723 est11=AHK647F,1254,1810 est12=AHI139F,1296,1900 est13=AHN318F,1427,2017 est14=CHK682F,1477,1999 est15=VHN517F,1492,2056 est16=AHQ589F,1494,1984 est17=AHD577F,1528,2196 est18=AHB627F,1539,2134 est19=CHK262F,1607,2246 est20=AHF686F,1619,2265 est21=VHC628F,1625,2269 est22=CHM795F,1684,2211 est23=AHR157F,1696,2284 est24=AHC190F,1723,2315 est25=AHB421F,1750,2374 est26=AHM854F,1785,2363 est27=CHK148F,1803,2431 est28=AHA266F,1810,2410 est29=AHL406F,1831,2439 est30=VHE680F,2002,2616 est31=AHB718F,2039,2617 est32=AHM639F,2051,2672 est33=AHJ703F,2068,2661 est34=AFH401F,2349,2904 est35=AFK248F,2388,2997 est36=AFH845F,2398,2997 est37=VFB354F,2836,3326 est38=VFK437E,3168,4280 est39=VHN517Z,3549,4310 est40=VFB354Z,3655,4282 est41=VHE680Z,3704,4301 est42=AHA266Z,4311,5110 est43=AHB421Z,4314,5098 est44=AHK647Z,4341,5102 est45=AHL669Z,4343,5104 est46=AHD577Z,4354,5105 est47=AHL236Z,4363,5109 est48=AHB718Z,4364,5123 est49=AHM639Z,4364,5133 est50=AHB627Z,4366,5124 est51=AHQ589Z,4387,5110 est52=SHE595Z,4387,5019 est53=SHE263Z,4388,5071 est54=CHM795Z,4401,5138 est55=AHC190Z,4409,5122 est56=AHJ703Z,4411,5092 est57=AFH401Z,4418,5110 est58=AHR157Z,4437,5113 est59=AHN251Z,4455,5077 est60=AHQ479Z,4488,5113 est61=CHK148Z,4521,5131 est62=AHN449Z,4532,5124 est63=CHK262Z,4540,5096 est64=CHK682Z,4575,5121
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Translated Amino Acid sequence |
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Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.22 |
Homology vs DNA |
Query= Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Contig-U10902-1Q.Seq.d (5146 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ355316) Dictyostelium discoideum cDNA clone:dda56m10, 3' ... 1511 0.0 1 (BJ348765) Dictyostelium discoideum cDNA clone:dda34e08, 3' ... 1495 0.0 1 (BJ348406) Dictyostelium discoideum cDNA clone:dda33j06, 3' ... 1483 0.0 1 (BJ354345) Dictyostelium discoideum cDNA clone:dda53g10, 3' ... 1477 0.0 1 (BJ357798) Dictyostelium discoideum cDNA clone:dda64a23, 3' ... 1417 0.0 1 (BJ349215) Dictyostelium discoideum cDNA clone:dda35c23, 3' ... 1384 0.0 1 (BJ384013) Dictyostelium discoideum cDNA clone:ddc47n23, 3' ... 1380 0.0 1 (BJ348693) Dictyostelium discoideum cDNA clone:dda34d05, 3' ... 1368 0.0 3 (BJ336272) Dictyostelium discoideum cDNA clone:dda53g10, 5' ... 1249 0.0 1 (BJ357559) Dictyostelium discoideum cDNA clone:dda63n20, 3' ... 1227 0.0 1 (BJ335500) Dictyostelium discoideum cDNA clone:dda50p11, 5' ... 1174 0.0 1 (BJ406036) Dictyostelium discoideum cDNA clone:dds33m23, 3' ... 1166 0.0 2 (BJ336638) Dictyostelium discoideum cDNA clone:dda54i18, 5' ... 1162 0.0 1 (BJ355575) Dictyostelium discoideum cDNA clone:dda57e14, 3' ... 1160 0.0 2 (BJ339044) Dictyostelium discoideum cDNA clone:dda63n20, 5' ... 1150 0.0 1 (BJ381726) Dictyostelium discoideum cDNA clone:ddc42o11, 3' ... 1144 0.0 2 (BJ429482) Dictyostelium discoideum cDNA clone:ddv3l13, 3' e... 1142 0.0 3 (BJ355562) Dictyostelium discoideum cDNA clone:dda57b14, 3' ... 1134 0.0 2 (BJ347894) Dictyostelium discoideum cDNA clone:dda31c18, 3' ... 1130 0.0 2 (BJ353401) Dictyostelium discoideum cDNA clone:dda50f01, 3' ... 1126 0.0 2 (BJ354747) Dictyostelium discoideum cDNA clone:dda54i18, 3' ... 1122 0.0 4 (BJ354070) Dictyostelium discoideum cDNA clone:dda52m12, 3' ... 1122 0.0 4 (BJ350137) Dictyostelium discoideum cDNA clone:dda38i19, 3' ... 1114 0.0 4 (BJ381782) Dictyostelium discoideum cDNA clone:ddc42k16, 3' ... 1092 0.0 1 (BJ433299) Dictyostelium discoideum cDNA clone:ddv21j10, 3' ... 1084 0.0 4 (BJ405712) Dictyostelium discoideum cDNA clone:dds32m16, 3' ... 1084 0.0 4 (BJ382061) Dictyostelium discoideum cDNA clone:ddc43c22, 3' ... 1072 0.0 1 (BJ439589) Dictyostelium discoideum cDNA clone:ddv40o20, 3' ... 1047 0.0 3 (BJ415083) Dictyostelium discoideum cDNA clone:ddv21j10, 5' ... 1033 0.0 2 (BJ394136) Dictyostelium discoideum cDNA clone:dds33m23, 5' ... 981 0.0 2 (BJ393801) Dictyostelium discoideum cDNA clone:dds32m16, 5' ... 971 0.0 2 (BJ395179) Dictyostelium discoideum cDNA clone:dds37m23, 5' ... 906 0.0 2 (BJ342823) Dictyostelium discoideum cDNA clone:dda15b02, 3' ... 902 0.0 2 (BJ358013) Dictyostelium discoideum cDNA clone:dda65a15, 3' ... 864 0.0 2 (BJ367416) Dictyostelium discoideum cDNA clone:ddc42k16, 5' ... 850 0.0 3 (BJ444956) Dictyostelium discoideum cDNA clone:ddv58a05, 3' ... 781 0.0 3 (BJ420946) Dictyostelium discoideum cDNA clone:ddv40o20, 5' ... 599 0.0 5 (BJ332363) Dictyostelium discoideum cDNA clone:dda38i19, 5' ... 478 0.0 3 (BJ329814) Dictyostelium discoideum cDNA clone:dda26k08, 5' ... 1007 0.0 2 (BJ327707) Dictyostelium discoideum cDNA clone:dda21o12, 5' ... 819 0.0 2 (BJ337466) Dictyostelium discoideum cDNA clone:dda57e14, 5' ... 1017 0.0 1 (BJ326410) Dictyostelium discoideum cDNA clone:dda16j12, 5' ... 535 0.0 3 (BJ419507) Dictyostelium discoideum cDNA clone:ddv36g08, 5' ... 837 0.0 3 (BJ335398) Dictyostelium discoideum cDNA clone:dda50f01, 5' ... 599 0.0 5 (BJ329483) Dictyostelium discoideum cDNA clone:dda25k03, 5' ... 916 0.0 2 (BJ333476) Dictyostelium discoideum cDNA clone:dda42k22, 5' ... 815 0.0 4 (BJ336996) Dictyostelium discoideum cDNA clone:dda55k24, 5' ... 494 0.0 3 (BJ339473) Dictyostelium discoideum cDNA clone:dda65a15, 5' ... 726 0.0 3 (BJ331195) Dictyostelium discoideum cDNA clone:dda34e08, 5' ... 944 0.0 2 (BJ336016) Dictyostelium discoideum cDNA clone:dda52m12, 5' ... 884 0.0 2 (BJ330891) Dictyostelium discoideum cDNA clone:dda33j06, 5' ... 626 0.0 4 (BJ336221) Dictyostelium discoideum cDNA clone:dda53l02, 5' ... 704 0.0 4 (BJ426125) Dictyostelium discoideum cDNA clone:ddv58a05, 5' ... 361 0.0 4 (BJ337453) Dictyostelium discoideum cDNA clone:dda57b14, 5' ... 920 0.0 1 (BJ368746) Dictyostelium discoideum cDNA clone:ddc47n23, 5' ... 745 0.0 2 (BJ337211) Dictyostelium discoideum cDNA clone:dda56l14, 5' ... 759 0.0 3 (BJ367370) Dictyostelium discoideum cDNA clone:ddc42o11, 5' ... 509 0.0 4 (BJ331528) Dictyostelium discoideum cDNA clone:dda35c23, 5' ... 650 0.0 4 (BJ334683) Dictyostelium discoideum cDNA clone:dda47m09, 5' ... 404 0.0 4 (BJ367724) Dictyostelium discoideum cDNA clone:ddc43c22, 5' ... 666 0.0 2 (BJ330429) Dictyostelium discoideum cDNA clone:dda31c18, 5' ... 509 0.0 4 (BJ411260) Dictyostelium discoideum cDNA clone:ddv3l13, 5' e... 803 0.0 2 (BJ337323) Dictyostelium discoideum cDNA clone:dda57d05, 5' ... 440 0.0 3 (BJ339270) Dictyostelium discoideum cDNA clone:dda64a23, 5' ... 831 0.0 1 (BJ337143) Dictyostelium discoideum cDNA clone:dda56m10, 5' ... 387 0.0 5 (BJ326250) Dictyostelium discoideum cDNA clone:dda15b02, 5' ... 321 0.0 3 (BJ331137) Dictyostelium discoideum cDNA clone:dda34d05, 5' ... 464 0.0 4 (BJ438087) Dictyostelium discoideum cDNA clone:ddv36g08, 3' ... 174 e-124 11 (BJ355424) Dictyostelium discoideum cDNA clone:dda57d05, 3' ... 212 e-119 10 (BJ354291) Dictyostelium discoideum cDNA clone:dda53l02, 3' ... 202 e-114 10 (BJ355148) Dictyostelium discoideum cDNA clone:dda55k24, 3' ... 174 e-107 10 (BJ407240) Dictyostelium discoideum cDNA clone:dds37m23, 3' ... 174 e-105 10 (BJ352641) Dictyostelium discoideum cDNA clone:dda47m09, 3' ... 172 e-100 10 (BJ345059) Dictyostelium discoideum cDNA clone:dda21o12, 3' ... 165 1e-97 10 (BJ353514) Dictyostelium discoideum cDNA clone:dda50p11, 3' ... 145 2e-96 8 (BJ355387) Dictyostelium discoideum cDNA clone:dda56l14, 3' ... 145 8e-96 8 (BJ347194) Dictyostelium discoideum cDNA clone:dda26k08, 3' ... 145 7e-92 8 (BJ346813) Dictyostelium discoideum cDNA clone:dda25k03, 3' ... 137 2e-89 8 (BJ343535) Dictyostelium discoideum cDNA clone:dda16j12, 3' ... 145 4e-89 8 (BJ351350) Dictyostelium discoideum cDNA clone:dda42k22, 3' ... 137 9e-89 10 (C92743) Dictyostelium discoideum slug cDNA, clone SSF181. 145 4e-62 8 (AU072822) Dictyostelium discoideum slug cDNA, clone SSF181. 139 5e-52 2 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 2e-07 26 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 40 2e-07 25 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 4e-07 20 (AL844506) Plasmodium falciparum chromosome 7. 40 8e-07 15 (AF538053) Monosiga brevicollis mitochondrion, complete genome. 44 1e-06 16 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 38 2e-06 23 (AL844507) Plasmodium falciparum chromosome 8. 38 3e-06 18 (CP000883) Hemiselmis andersenii chromosome 3, complete sequ... 36 4e-06 27 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 7e-06 24 (CP000361) Arcobacter butzleri RM4018, complete genome. 38 9e-06 25 (AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 1e-05 22 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 2e-05 22 (AX344565) Sequence 16 from Patent WO0200932. 40 2e-05 22 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 2e-05 21 (AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 2e-05 19 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 40 2e-05 15 (AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 34 2e-05 23 (CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 38 2e-05 23
>(BJ355316) Dictyostelium discoideum cDNA clone:dda56m10, 3' end, single read. Length = 768
Score = 1511 bits (762), Expect = 0.0 Identities = 764/765 (99%) Strand = Plus / Minus
Query: 4373 atttcaagagttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcagga 4432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 768 atttcaagagttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcagga 709
Query: 4433 gacattagaaccaaattcattttaaatggacaagatatcactaaaaactcaaaaaccaaa 4492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 gacattagaaccaaattcattttaaatggacaagatatcactaaaaactcaaaaaccaaa 649
Query: 4493 tgtttttatgatcaaccaaattcaactctttatttagaaaaaggtatttctaaaagtgaa 4552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 648 tgtttttatgatcaaccaaattcaactctttatttagaaaaaggtatttctaaaagtgaa 589
Query: 4553 gcattcaattacctatttaattccactggtttgaatgtaaactcttcaattgtatcaaat 4612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 588 gcattcaattacctatttaattccactggtttgaatgtaaactcttcaattgtatcaaat 529
Query: 4613 ctagaaagagagtttgtaaatgatgaaccaattgtcgatccagttgataatttcttggct 4672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 528 ctagaaagagagtttgtaaatgatgaaccaattgtcgatccagttgataatttcttggct 469
Query: 4673 caaactaatcaaaatgtggttgttaattctattgatgacaaccatacaactttaatccaa 4732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 468 caaactaatcaaaatgtggttgttaattctattgatgacaaccatacaactttaatccaa 409
Query: 4733 aaaattcattgtagacactacaacaccattgcactaagaaatcgtgaagctgctgaaact 4792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 408 aaaattcattgtagacactacaacaccattgcactaagaaatcgtgaagctgctgaaact 349
Query: 4793 ttattctacaatcaatcattaattagacaatcaatttacttttactatgtttcaacagat 4852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 348 ttattctacaatcaatcattaattagacaatcaatttacttttactatgtttcaacagat 289
Query: 4853 atgctactaagaagtcttttggttttttattttgataataatattccagattctctttca 4912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 atgctactaagaagtcttttggttttttattttgataataatattccagattctctttca 229
Query: 4913 attactcgtatgagagatgtattatccagaaaatcaactacaaccataccacacattcca 4972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 attactcgtatgagagatgtattatccagaaaatcaactacaaccataccacacattcca 169
Query: 4973 gatcgtttcaatgatttcaaagaagcccacttaaaaacaacaaacatcaatagtaatgat 5032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 gatcgtttcaatgatttcaaagaagcccacttaaaaacaacaaacatcaatagtaatgat 109
Query: 5033 ctaattgaatttcgttcaattacttctcaactattaaacatttctaatcaaatgagaatt 5092 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 108 ctaattgaatttcgttcaattacttctcaactattaaacatttctaatcaaatganaatt 49
Query: 5093 aatagaaaataaataaataatatattaactttctttacgtcaacc 5137 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 48 aatagaaaataaataaataatatattaactttctttacgtcaacc 4
Score = 733 bits (370), Expect(4) = 0.0 Identities = 466/498 (93%) Strand = Plus / Minus
Query: 3684 aaaacccaaatgttattatgatcaatcaaattcaactctttatttagagaaagaaattac 3743 |||| ||||||||| |||||||||| |||||||||||||||||||||| |||| ||| | Sbjct: 658 aaaaaccaaatgtttttatgatcaaccaaattcaactctttatttagaaaaaggtatttc 599
Query: 3744 taaaaatgaagcattcaattacctatttaattccactggtttgaatgtaacctcttcaat 3803 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 598 taaaagtgaagcattcaattacctatttaattccactggtttgaatgtaaactcttcaat 539
Query: 3804 tgtattaaatctagaaagagagtttgtaaatgatgaaccaactgtcgatccagttgataa 3863 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 538 tgtatcaaatctagaaagagagtttgtaaatgatgaaccaattgtcgatccagttgataa 479
Query: 3864 tttcttggctcaaactaatcaaaatgtggttgttaatttagttgatgacaaccattcagc 3923 |||||||||||||||||||||||||||||||||||||| |||||||||||||| || | Sbjct: 478 tttcttggctcaaactaatcaaaatgtggttgttaattctattgatgacaaccatacaac 419
Query: 3924 tttaatccgaaaaaatctttgtagacactacaacaccattgcactaagaaatcgtgaagc 3983 |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 tttaatccaaaaaattcattgtagacactacaacaccattgcactaagaaatcgtgaagc 359
Query: 3984 tgctgaaactttattcgacaaccaatcgttaatcagacaatctatatacttttactatat 4043 |||||||||||||||| |||| ||||| ||||| |||||||| || |||||||||||| | Sbjct: 358 tgctgaaactttattctacaatcaatcattaattagacaatcaatttacttttactatgt 299
Query: 4044 ttcaacagatatgctactaagaagtcttttggttttttattatgataataatgttccagg 4103 ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 298 ttcaacagatatgctactaagaagtcttttggttttttattttgataataatattccaga 239
Query: 4104 ttctctttcaattactcgtatgagagatttattatccagaaactcaaccacaaccatacc 4163 |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct: 238 ttctctttcaattactcgtatgagagatgtattatccagaaaatcaactacaaccatacc 179
Query: 4164 acacattccagatcgttt 4181 |||||||||||||||||| Sbjct: 178 acacattccagatcgttt 161
Score = 161 bits (81), Expect(4) = 0.0 Identities = 108/117 (92%) Strand = Plus / Minus
Query: 3573 atttcaagagttaatcatctacagttaagcagaatcttgaatattacagttaaatcagga 3632 |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct: 768 atttcaagagttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcagga 709
Query: 3633 gacattagaaccacattcattttaaatgaacaaaatatcactaaatactcaaaaacc 3689 ||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||| Sbjct: 708 gacattagaaccaaattcattttaaatggacaagatatcactaaaaactcaaaaacc 652
Score = 48.1 bits (24), Expect(4) = 0.0 Identities = 24/24 (100%) Strand = Plus / Minus
Query: 4253 tacttctcaactattaaacatttc 4276 |||||||||||||||||||||||| Sbjct: 88 tacttctcaactattaaacatttc 65
Score = 48.1 bits (24), Expect(4) = 0.0 Identities = 27/28 (96%) Strand = Plus / Minus
Query: 4226 gtaatgatctagttgaatttcgttcaat 4253 ||||||||||| |||||||||||||||| Sbjct: 116 gtaatgatctaattgaatttcgttcaat 89
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 7,300,050,456 Number of extensions: 476022765 Number of successful extensions: 44886008 Number of sequences better than 10.0: 930 Length of query: 5146 Length of database: 95,242,211,685 Length adjustment: 25 Effective length of query: 5121 Effective length of database: 97,216,030,006 Effective search space: 497843289660726 Effective search space used: 497843289660726 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 6.28 |
Homology vs Protein |
Query= Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Contig-U10902-1Q.Seq.d (5146 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(Q9NZJ4) RecName: Full=Sacsin; &AL157766_4(AL157766|pid:none) 134 3e-29 (Q9JLC8) RecName: Full=Sacsin; 130 4e-28 BC138482_1(BC138482|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 122 1e-25 BC171956_1(BC171956|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 122 1e-25 AB006708_10(AB006708|pid:none) Arabidopsis thaliana genomic DNA,... 117 6e-24 CR749427_1(CR749427|pid:none) Homo sapiens mRNA; cDNA DKFZp686B1... 112 1e-22 AL732351_6(AL732351|pid:none) Oryza sativa genomic DNA, chromoso... 111 2e-22 CP001577_292(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 107 4e-21 AL606457_18(AL606457|pid:none) Oryza sativa genomic DNA, chromos... 103 5e-20 BC142916_1(BC142916|pid:none) Danio rerio hypothetical LOC555303... 98 3e-18 AE017308_486(AE017308|pid:none) Mycoplasma mobile 163K complete ... 51 5e-04 AE017226_911(AE017226|pid:none) Treponema denticola ATCC 35405, ... 47 0.007 AM270330_30(AM270330|pid:none) Aspergillus niger contig An15c003... 45 0.036 CR382126_560(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 45 0.036 AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.048 AJ965256_94(AJ965256|pid:none) Dehalococcoides sp. CBDB1 complet... 44 0.062 CP000562_1468(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 44 0.081 CP001399_249(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 43 0.11 CP001401_219(CP001401|pid:none) Sulfolobus islandicus M.16.27, c... 43 0.14 AM910996_572(AM910996|pid:none) Plasmodium knowlesi strain H chr... 43 0.14 CP001402_236(CP001402|pid:none) Sulfolobus islandicus M.16.4, co... 43 0.14 AE017261_1415(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 42 0.18 CR380959_530(CR380959|pid:none) Candida glabrata strain CBS138 c... 42 0.18 AB037166_5(AB037166|pid:none) Clostridium botulinum genes for OR... 42 0.24 AM486554_1(AM486554|pid:none) Vitis vinifera contig VV78X050356.... 41 0.40 AF443617_2(AF443617|pid:none) Mycoplasma hominis thiamine biosyn... 41 0.40 CP000361_409(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 41 0.53 AE014187_243(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.69 AL844504_229(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.69 CP000077_853(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 40 0.69 BA000021_483(BA000021|pid:none) Wigglesworthia glossinidia endos... 40 0.90 CP000123_314(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 40 0.90 AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay... 40 1.2 AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n... 40 1.2 CP000102_900(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 40 1.2 CP001357_1437(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 40 1.2 CP000770_88(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, ... 39 1.5 X87972_4(X87972|pid:none) C.botulinum progenitor toxin complex g... 39 1.5 AL132963_3(AL132963|pid:none) Arabidopsis thaliana DNA chromosom... 39 1.5 AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt... 39 1.5 AM910996_492(AM910996|pid:none) Plasmodium knowlesi strain H chr... 39 1.5 AL844505_212(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 39 1.5 DQ158856_94(DQ158856|pid:none) Bigelowiella natans nucleomorph c... 39 1.5 CP001056_2911(CP001056|pid:none) Clostridium botulinum B str. Ek... 39 1.5 CR382400_46(CR382400|pid:none) Plasmodium falciparum chromosome ... 39 1.5 AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 39 1.5 CP000559_973(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 39 2.0 AP008971_755(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 39 2.0 AL844509_132(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 39 2.0 AC117176_50(AC117176|pid:none) Dictyostelium discoideum chromoso... 39 2.0 (Q4AAC7) RecName: Full=Lysyl-tRNA synthetase; EC=6.1.1.... 39 2.6 AE017332_172(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co... 39 2.6 AL844506_218(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 39 2.6 AM432305_1(AM432305|pid:none) Vitis vinifera contig VV78X237792.... 39 2.6 CP000779_32(CP000779|pid:none) Leptospira biflexa serovar Patoc ... 38 3.4 CP000609_1734(CP000609|pid:none) Methanococcus maripaludis C5, c... 38 3.4 CP000851_2584(CP000851|pid:none) Shewanella pealeana ATCC 700345... 38 3.4 AE001362_103(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 38 3.4 AY394560_49(AY394560|pid:none) Campylobacter coli plasmid pCC31,... 38 3.4 AC153353_10(AC153353|pid:none) Medicago truncatula clone mth2-18... 38 4.4 FN357440_14(FN357440|pid:none) Schistosoma mansoni genome sequen... 38 4.4 CP001345_54(CP001345|pid:none) Cyanothece sp. PCC 7425 plasmid p... 38 4.4 FN357440_11(FN357440|pid:none) Schistosoma mansoni genome sequen... 38 4.4 A90083(A90083) hypothetical protein orf470 [imported] - Guillard... 38 4.4 FN357440_13(FN357440|pid:none) Schistosoma mansoni genome sequen... 38 4.4 AE000511_460(AE000511|pid:none) Helicobacter pylori 26695, compl... 37 5.8 BX842654_5(BX842654|pid:none) Bdellovibrio bacteriovorus complet... 37 5.8 AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso... 37 5.8 CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 37 5.8 AE014185_187(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 37 5.8 CP001202_54(CP001202|pid:none) Borrelia burgdorferi ZS7 plasmid ... 37 5.8 CU928174_42(CU928174|pid:none) Zygosaccharomyces rouxii strain C... 37 5.8 CP000395_842(CP000395|pid:none) Borrelia afzelii PKo, complete g... 37 7.6 AE014186_353(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 37 7.6 CR940352_290(CR940352|pid:none) Theileria annulata strain Ankara... 37 7.6 AL034557_40(AL034557|pid:none) Plasmodium falciparum MAL4P1. &A... 37 7.6 CP000361_1121(CP000361|pid:none) Arcobacter butzleri RM4018, com... 37 7.6 AL844508_46(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 37 7.6 AC153129_8(AC153129|pid:none) Medicago truncatula clone mth2-103... 37 7.6 DQ396875_5(DQ396875|pid:none) Scenedesmus obliquus strain UTEX 3... 37 9.9 CP000814_1074(CP000814|pid:none) Campylobacter jejuni subsp. jej... 37 9.9 (Q6BNL6) RecName: Full=Chromatin modification-related protein YN... 37 9.9 AL844509_243(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 9.9 CP000882_126(CP000882|pid:none) Hemiselmis andersenii chromosome... 37 9.9 EU016634_7(EU016634|pid:none) Uncultured Group I marine crenarch... 37 9.9 CP000361_1538(CP000361|pid:none) Arcobacter butzleri RM4018, com... 37 9.9 AJ131360_6(AJ131360|pid:none) Campylobacter jejuni (strain 81116... 37 9.9 AE015927_2092(AE015927|pid:none) Clostridium tetani E88, complet... 37 9.9 CP000140_2631(CP000140|pid:none) Parabacteroides distasonis ATCC... 37 9.9
>(Q9NZJ4) RecName: Full=Sacsin; &AL157766_4(AL157766|pid:none) Length = 4579
Score = 134 bits (337), Expect = 3e-29 Identities = 131/507 (25%), Positives = 213/507 (42%), Gaps = 18/507 (3%) Frame = +1
Query: 43 LPQEF-IDLGHSALHNKISENTASKLSITKLSQLIQSQVAFENSFGQKEELVDRLKQILR 219 +P+E + LG +K E AS + T L FGQKE+L R+K IL Sbjct: 2488 IPREVAVKLGAVPKRHKALERYASNVCFTTLG----------TEFGQKEKLTSRIKSILN 2537
Query: 220 DYKVEV-FLNEMVQNAHDAGSTEVKLILDCNSLKQQFLKENPEISTLCKDLPSYFESSLL 396 Y E L E++QNA DA +TE+ + D +++P +L Sbjct: 2538 AYPSEKEMLKELLQNADDAKATEICFVFDP--------RQHPVDRIFDDKWAPLQGPALC 2589
Query: 397 FYNNSVFTEKDIKNVQVMSASIKKQDENSIGQHGLGINSMYSFSDCPCILSG-EYLMIFD 573 YNN FTE D++ +Q + K+ + GQ+G+G NS+Y +DCP +SG + L IFD Sbjct: 2590 VYNNQPFTEDDVRGIQNLGKGTKEGNPYKTGQYGIGFNSVYHITDCPSFISGNDILCIFD 2649
Query: 574 PFVTHIGQSINYSHGAKYKISQYKPYLKYFKPFQHLQSIFDFDLDDGKFNGTIIRLPLRK 753 P + + + S G ++ + F L F LD N T+ R PLR Sbjct: 2650 PHARYAPGATSISPGRMFR-DLDADFRTQFSDVLDLYLGTHFKLD----NCTMFRFPLRN 2704
Query: 754 IQNDGNRHISPQKWNEANVLDYLKRVKASNLENLMFFTNIDSLEVSILPVGSKKL----- 918 + IS ++ V + L ++++ E LMF +++ + + + + L Sbjct: 2705 AEMAKVSEISSVPASDRMVQNLLDKLRSDGAELLMFLNHMEKISICEIDKSTGALNVLYS 2764
Query: 919 --------EQQXXXXXXXXXXXXTNQYNNLMNIPTQVSEYTFTIIPSEKSKITEKYIIGQ 1074 ++ + L +IP Q YT SE +T I + Sbjct: 2765 VKGKITDGDRLKRKQFHASVIDSVTKKRQLKDIPVQQITYTMDTEDSE-GNLTTWLICNR 2823
Query: 1075 VIEEDFKDLSEYPDNKALKFLSIYNNEKRK--PVGGVAFKLPDFSLPEYKFTPKSFCYLP 1248 + +S+ +S + N+ P GGVA + YK ++FC+LP Sbjct: 2824 SGFSSMEKVSK-------SVISAHKNQDITLFPRGGVAACITH----NYKKPHRAFCFLP 2872
Query: 1249 YKDLISNIPVHIHANFSTTSSRDILENAKSSNLYNIEEILSKKDNQVIQQSDSFQLCWNQ 1428 L + +P H++ +F+ S+R NL+ + DN V +SD WN Sbjct: 2873 L-SLETGLPFHVNGHFALDSAR--------RNLW-------RDDNGVGVRSD-----WNN 2911
Query: 1429 LIVTEIIAPLYINTLTLFKNKYIKGND 1509 ++T +IAP Y+ L K +Y G+D Sbjct: 2912 SLMTALIAPAYVELLIQLKKRYFPGSD 2938
Score = 120 bits (301), Expect = 5e-25 Identities = 126/455 (27%), Positives = 201/455 (44%), Gaps = 25/455 (5%) Frame = +1
Query: 172 FGQKEE-LVDRLKQILRDY-KVEVFLNEMVQNAHDAGSTEVKLILDCNSLKQQFLKENPE 345 FGQ LVD LK ILR Y + L E++QNA DAG+TEVK + D + Q+ E Sbjct: 89 FGQTTPPLVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYD----ETQYGTE--- 141
Query: 346 ISTLCKDLPSYFESSLLFYNNSVFTEKDIKNVQVMSASIKKQDENSIGQHGLGINSMYSF 525 + KD+ Y +L YNN+VFT +D +Q ++ S KK D +G+ G+G NS+Y Sbjct: 142 -TLWSKDMAPYQGPALYVYNNAVFTPEDWHGIQEIARSRKKDDPLKVGRFGIGFNSVYHI 200
Query: 526 SDCPCILSGEYLMIFDPFVT-----HIGQSINYSHGAKYKISQYKPYLKYFKPFQHLQSI 690 +D PCI SG+ + + DP T GQ N +K +IS+ F PF + Sbjct: 201 TDVPCIFSGDQIGMLDPHQTLFGPHESGQCWNLKDDSK-EISELS---DQFAPFVGIFGS 256
Query: 691 FDFDLDDGKFNGTIIRLPLRKIQNDGNRHISPQKWNEANVLDYLKRVKASNLENLMFFTN 870 +G F GT R PLR + +S +N+ VL+ + +A L+F + Sbjct: 257 TKETFINGNFPGTFFRFPLRLQPS----QLSSNLYNKQKVLELFESFRADADTVLLFLKS 312
Query: 871 IDSLEVSILPV-GSKKLEQQXXXXXXXXXXXXTNQYNNLMNIPTQVSEYTFTIIPSEKSK 1047 + + + + G++KL + + N++ + T +S Y + + Sbjct: 313 VQDVSLYVREADGTEKLVFRVTSSESKALKH--ERPNSIKILGTAISNYCKKTPSNNITC 370
Query: 1048 ITEKYIIGQVIEE----DFKDLSEYPDNK------ALKFLSIYNNEKRKPVGGVAFKL-- 1191 +T Y + V+EE D + S N + K S+ + K P+ G+A L Sbjct: 371 VT--YHVNIVLEEESTKDAQKTSWLVCNSVGGRGISSKLDSLADELKFVPIIGIAMPLSS 428
Query: 1192 --PDFSLPEYKFTPKSFCYLPY---KDLISNIPVHIHANFSTTSSRDILENAKSSNLYNI 1356 + F+ K+FC+LP ++ + +PVHI F T +R Sbjct: 429 RDDEAKGATSDFSGKAFCFLPLPPGEESSTGLPVHISGFFGLTDNR-------------- 474
Query: 1357 EEILSKKDNQVIQQSDSFQLCWNQLIVTEIIAPLY 1461 S K ++ Q D L WN+ +V ++ Y Sbjct: 475 ---RSIKWRELDQWRDPAAL-WNEFLVMNVVPKAY 505
Score = 112 bits (280), Expect = 1e-22 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 11/286 (3%) Frame = +1
Query: 79 LHNKISENTASKLSITKLS-QLIQSQ-VAFENSFGQKEELVDRLKQILRDY-KVEVFLNE 249 +H I TA L + LS +LI + + FE S GQ+E L R+K IL +Y V E Sbjct: 1422 VHEDIPMKTAEWLKVPCLSTRLINPENMGFEQS-GQREPLTVRIKNILEEYPSVSDIFKE 1480
Query: 250 MVQNAHDAGSTEVKLILDCNSLKQQFLKENPEISTLCKDLPSYFESSLLFYNNSVFTEKD 429 ++QNA DA +TE ++D + ++EN L + + +L +NNS F++ D Sbjct: 1481 LLQNADDANATECSFLIDMR--RNMDIREN----LLDPGMAACHGPALWSFNNSQFSDSD 1534
Query: 430 IKNVQVMSASIKKQDENSIGQHGLGINSMYSFSDCPCILSGEYLMIFDPFVTHIGQSINY 609 N+ + S+K+ + + +G+ GLG NS+Y +D P I+S E++++FDP + HI + I Sbjct: 1535 FVNITRLGESLKRGEVDKVGKFGLGFNSVYHITDIPIIMSREFMIMFDPNINHISKHIKD 1594
Query: 610 SHGAKYKIS---QYKPYLKYFKPFQHLQSIFDFDLD-----DGKFNGTIIRLPLRKIQND 765 KI+ Q K K+ F+ +F L +NGT+ RL R Q Sbjct: 1595 KSNPGIKINWSKQQKRLRKFPNQFKPFIDVFGCQLPLTVEAPYSYNGTLFRLSFRTQQEA 1654
Query: 766 GNRHISPQKWNEANVLDYLKRVKASNLENLMFFTNIDSLEVSILPV 903 +S +N A++ + ++F ++ S+ + L + Sbjct: 1655 KVSEVSSTCYNTADIYSLVDEFSLCGHRLIIFTQSVKSMYLKYLKI 1700
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 7,448,433,856 Number of extensions: 143745100 Number of successful extensions: 372191 Number of sequences better than 10.0: 89 Number of HSP's gapped: 371877 Number of HSP's successfully gapped: 101 Length of query: 1715 Length of database: 1,040,966,779 Length adjustment: 143 Effective length of query: 1572 Effective length of database: 582,754,024 Effective search space: 916089325728 Effective search space used: 916089325728 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
3 |
VF (FL, S) |
2 |
AH (FL, L) |
23 |
AF (FL, S) |
3 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
3 |
SF (FL, S) |
0 |
CH (FL, L) |
4 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |