Contig-U10902-1
Contig ID Contig-U10902-1
Contig update 2002.12.18
Contig sequence
>Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Contig-U10902-1Q.Seq.d
ATTTGTTGAATTTGAAAAAGTAATTTACATTGATCTTCATGTTTACCTCA
AGAATTCATTGATTTAGGACACAGTGCATTACATAATAAAATTTCTGAAA
ACACTGCATCAAAACTCAGTATTACAAAACTTTCTCAATTGATTCAAAGT
CAAGTAGCATTTGAGAATTCATTTGGACAAAAAGAAGAATTAGTCGATCG
TTTGAAACAAATTTTACGTGATTATAAAGTAGAAGTATTTTTAAACGAAA
TGGTTCAAAATGCTCATGATGCTGGATCAACAGAAGTAAAATTAATTTTA
GATTGTAATTCTTTAAAACAACAATTTTTAAAAGAAAATCCAGAGATAAG
TACACTATGTAAAGATCTTCCATCATACTTTGAAAGTTCTTTACTTTTTT
ATAATAATTCAGTTTTTACAGAAAAAGATATTAAAAATGTTCAAGTAATG
TCAGCATCAATTAAAAAACAAGATGAAAATTCTATTGGTCAACATGGTTT
AGGTATTAATTCTATGTATTCATTCAGTGATTGTCCATGTATATTAAGTG
GTGAATATTTGATGATTTTCGATCCATTCGTAACACATATCGGTCAATCA
ATAAACTATTCACATGGTGCTAAATATAAAATTTCACAATACAAACCATA
TTTAAAATACTTTAAACCATTTCAACATTTACAATCAATTTTTGATTTTG
ATTTAGATGATGGTAAATTCAATGGAACAATCATTCGTTTACCACTTCGT
AAGATACAAAACGATGGTAATCGTCATATTAGTCCACAGAAATGGAACGA
AGCAAATGTTTTAGATTATTTAAAAAGAGTAAAAGCAAGTAATTTAGAAA
ATTTAATGTTTTTCACAAACATAGATTCTTTAGAGGTTTCAATATTACCA
GTGGGAAGTAAAAAATTAGAACAACAAATTTCAATTCATAAAAAATCAAG
TTTATCATTAATTACAAACCAATATAATAATTTAATGAATATTCCAACAC
AAGTATCAGAATATACATTCACTATTATACCATCAGAGAAATCAAAGATA
ACTGAAAAATATATTATAGGTCAAGTAATTGAAGAAGATTTCAAAGATCT
ATCAGAATATCCAGATAATAAAGCATTGAAATTTTTATCAATCTATAATA
ATGAAAAAAGAAAACCAGTTGGAGGTGTCGCATTTAAATTACCAGATTTC
TCACTTCCTGAATACAAATTCACACCAAAATCATTTTGTTATTTACCATA
CAAAGATTTAATTTCAAATATTCCAGTTCACATTCATGCAAACTTTTCAA
CAACAAGTTCACGTGATATTTTAGAAAATGCCAAATCTTCAAATTTATAT
AATATTGAAGAGATACTCTCTAAAAAGGATAATCAAGTAATACAACAATC
AGATAGTTTCCAACTTTGTTGGAATCAATTAATTGTAACTGAAATTATAG
CACCACTCTATATTAATACATTAACTCTTTTCAAAAACAAATATATTAAA
GGTAATGATATAGATAAAATTTCAAAATATCATAATTTCTATTACTCTCG
TTTCCCAGTATTAAGTGATTCATTATCAAATCATTCAATTCTCGAAATGT
TAGCAAATAAGTTTTACTCATTAGTAAATTCAGAGAATTCCGATGTATTC
ATCCATTACCCTGGTGTCGAAATTAAAAAGAGTCCAAAAGATACATTTTA
TGCAGAGTTGAGTTTCTTCTTATCAAATGCATATTCAGATTCAATTTTAA
AGTGTATTAGTCACATTGGTTTCAATGTTAATGTTTGTCCATTTAAAATT
TATTTTAGTTTTAAGTCACTACCAAACTGGTTAACAGAATATACAATATC
AAATGCCTTGAAAGGAGAGAATTTAAATCCTCAAGTAATAAATACTCAAG
ATATTGCAAATATAATATTATATTTCTCAAAAATGCCAGAATATCTAGAT
AACTGCCAAGTATTGATTTTCAATGATAAAACAAGGGGTTTTGTTAATAT
TGAAAACAAAATAATAAACCAACTATATAACCAAACTCATTTTGAAATGA
CTCAAGATGTTTTAGATTTAAAATTCATTGATAGAGAACTTACCGATATT
ATCAAAATGCTTTTAGATCCTCTCATTTTGGATTCACTTAAAACGATTAA
CATCTTTGATTTCAACTATGTTGATTTTTATTTCCACTATCTCTTACCAA
ATTTCAATATATTATCAGCTGAAAAAAATATTTCATTTTTAAACAAATTA
TTGGAATACTTTACATTTGAAAAAAACTCTGATTATAAATCAATCAACCA
TCCTCTAATATCCGAAGAAAGAATAAATAAACTAAAAGGTTCAAAAGTTT
TTCCTTTTGTTAAAAAGGGTGTTCAAGAGTTTTCTTTAATTTCAAAATTA
TCCGATCCAACATTTAAACAATATGATTTCATATTAGATTATCCAGATTT
AGAGCATTCAAAAGAAAATATCAAAATATTTAGATGTTTAGGTATTCGAG
ACAAATTAAAGAAAAATGATATTGTATACCAATTCAAAAAGATTTCATCA
GAAGTTTATAGTGGAAACACACCTTTGGGAAACCTTAATTGAAAGAGCAC
GTCTATTATGGAAATCAGAAAAATGTGTCAAAGTATTTAATGAATTGTTA
GAATTAAATATTGTACCAGTCAAAGAAAGTAATATCATTGGCAGTAGAAA
AATATCATTAGGATTGATGCCAACTACCCGAAGTATGCCAACATCGCTAT
GAAGATCTTTATTTTTCAGTAAAACTACTTCAAGATGTAGATATTAAATA
CCCACCAGGATATAATCAAATTGATTGTGAAAAAATATTTGAAAATTTCG
TTAATCTTCTTACAAACATCAGAGATTGGAAATTGATTCAAGTAAATGGT
AATTTAGTTACAGACCCCAAAATCATACAAATGTTAATATCGATGTGTAG
TCATTTGGAAAACTATACAGGAAATTTCTCATCAGAACTTGTAGAAAGAA
TTCAAAGTATCCCAGTATTAAACTCTACAACATCTATTGAATTTACAAAT
ATAGTCATGGGAACTAATGCAAATTGTTTGAGACCATTTTTCAATATTTT
ACCTCCAAACTTTTCAACTTTTAGACATTTTTTCAGTAAAATTGGTGTAA
TAGAATTAAATGTAAACACGATTGTAATGGGATTAAATAGATTTTTAGAT
GATGAGATTAATACTATCGAAGGAATTGGATCGTTAAGCTATCTTTATGG
ATTATTATTTAGTTTTGGTAGTGAATTGGAAACATTTAAAAATGAACACT
CATCATTACCAGTTTTCACTAAAAAAGGATTTATAAAACCATCGAATCAA
GTTTATTCGTTCGATGGTGTACCCATTAAAAGAATTAATACTGAATCATT
TTATGAAATCCATGATTCAATTAAAGATAATTATGAACAATTGGGTGTTT
TAGAATTATCTTCAGTATTAAGAGAAGAACTAGACAATGATCTCACCAAC
CTTGAAAATGAAGATTTGGAGGATTCAATTGGAAAGTATTTGAATACCCT
TATCAAAGAAAATCAAGAATTTATTTCAAGAGTTAATCATCTACAGTTAA
GCAGAATCTTGAATATTACAGTTAAATCAGGAGACATTAGAACCACATTC
ATTTTAAATGAACAAAATATCACTAAATACTCAAAAACCCAAATGTTATT
ATGATCAATCAAATTCAACTCTTTATTTAGAGAAAGAAATTACTAAAAAT
GAAGCATTCAATTACCTATTTAATTCCACTGGTTTGAATGTAACCTCTTC
AATTGTATTAAATCTAGAAAGAGAGTTTGTAAATGATGAACCAACTGTCG
ATCCAGTTGATAATTTCTTGGCTCAAACTAATCAAAATGTGGTTGTTAAT
TTAGTTGATGACAACCATTCAGCTTTAATCCGAAAAAATCTTTGTAGACA
CTACAACACCATTGCACTAAGAAATCGTGAAGCTGCTGAAACTTTATTCG
ACAACCAATCGTTAATCAGACAATCTATATACTTTTACTATATTTCAACA
GATATGCTACTAAGAAGTCTTTTGGTTTTTTATTATGATAATAATGTTCC
AGGTTCTCTTTCAATTACTCGTATGAGAGATTTATTATCCAGAAACTCAA
CCACAACCATACCACACATTCCAGATCGTTTTAACAAATTCGAAGAGGCA
CACTTGAAAAACTCAAATATAAATCGTAATGATCTAGTTGAATTTCGTTC
AATACTTCTCAACTATTAAACATTTCAATCAAATGANAATTAGTAGAATA
TAAATAAAT----------AGGATTCAATTGGAAAATTTTTAAATACCTT
TATTAAGGAAAATCAACAATTTATTTCAAGAGTTAATCATCTACAGTTGA
GTCAAATCTTGAAAATTACAGTTAAATCAGGAGACATTAGAACCAAATTC
ATTTTAAATGGACAAGATATCACTAAAAACTCAAAAACCAAATGTTTTTA
TGATCAACCAAATTCAACTCTTTATTTAGAAAAAGGTATTTCTAAAAGTG
AAGCATTCAATTACCTATTTAATTCCACTGGTTTGAATGTAAACTCTTCA
ATTGTATCAAATCTAGAAAGAGAGTTTGTAAATGATGAACCAATTGTCGA
TCCAGTTGATAATTTCTTGGCTCAAACTAATCAAAATGTGGTTGTTAATT
CTATTGATGACAACCATACAACTTTAATCCAAAAAATTCATTGTAGACAC
TACAACACCATTGCACTAAGAAATCGTGAAGCTGCTGAAACTTTATTCTA
CAATCAATCATTAATTAGACAATCAATTTACTTTTACTATGTTTCAACAG
ATATGCTACTAAGAAGTCTTTTGGTTTTTTATTTTGATAATAATATTCCA
GATTCTCTTTCAATTACTCGTATGAGAGATGTATTATCCAGAAAATCAAC
TACAACCATACCACACATTCCAGATCGTTTCAATGATTTCAAAGAAGCCC
ACTTAAAAACAACAAACATCAATAGTAATGATCTAATTGAATTTCGTTCA
ATTACTTCTCAACTATTAAACATTTCTAATCAAATGAGAATTAATAGAAA
ATAAATAAATAATATATTAACTTTCTTTACGTCAACCAAAAAAAAA

Gap gap included
Contig length 5136
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2228450
End point 2233592
Strand (PLUS/MINUS) PLUS
Number of clones 38
Number of EST 64
Link to clone list U10902
List of clone(s)

est1=AHJ748F,-3,592
est2=SHE595F,103,770
est3=SHE263F,214,827
est4=AHQ479F,526,1105
est5=AHN449F,639,1105
est6=AHL236F,733,1362
est7=AHN251F,810,1322
est8=AHL669F,867,1488
est9=SHG595F,891,1516
est10=AHM294F,1080,1723
est11=AHK647F,1254,1810
est12=AHI139F,1296,1900
est13=AHN318F,1427,2017
est14=CHK682F,1477,1999
est15=VHN517F,1492,2056
est16=AHQ589F,1494,1984
est17=AHD577F,1528,2196
est18=AHB627F,1539,2134
est19=CHK262F,1607,2246
est20=AHF686F,1619,2265
est21=VHC628F,1625,2269
est22=CHM795F,1684,2211
est23=AHR157F,1696,2284
est24=AHC190F,1723,2315
est25=AHB421F,1750,2374
est26=AHM854F,1785,2363
est27=CHK148F,1803,2431
est28=AHA266F,1810,2410
est29=AHL406F,1831,2439
est30=VHE680F,2002,2616
est31=AHB718F,2039,2617
est32=AHM639F,2051,2672
est33=AHJ703F,2068,2661
est34=AFH401F,2349,2904
est35=AFK248F,2388,2997
est36=AFH845F,2398,2997
est37=VFB354F,2836,3326
est38=VFK437E,3168,4280
est39=VHN517Z,3549,4310
est40=VFB354Z,3655,4282
est41=VHE680Z,3704,4301
est42=AHA266Z,4311,5110
est43=AHB421Z,4314,5098
est44=AHK647Z,4341,5102
est45=AHL669Z,4343,5104
est46=AHD577Z,4354,5105
est47=AHL236Z,4363,5109
est48=AHB718Z,4364,5123
est49=AHM639Z,4364,5133
est50=AHB627Z,4366,5124
est51=AHQ589Z,4387,5110
est52=SHE595Z,4387,5019
est53=SHE263Z,4388,5071
est54=CHM795Z,4401,5138
est55=AHC190Z,4409,5122
est56=AHJ703Z,4411,5092
est57=AFH401Z,4418,5110
est58=AHR157Z,4437,5113
est59=AHN251Z,4455,5077
est60=AHQ479Z,4488,5113
est61=CHK148Z,4521,5131
est62=AHN449Z,4532,5124
est63=CHK262Z,4540,5096
est64=CHK682Z,4575,5121
Translated Amino Acid sequence
ic*i*ksnlh*ssclpqefidlghsalhnkisentasklsitklsqliqsqvafensfgq
keelvdrlkqilrdykvevflnemvqnahdagstevklildcnslkqqflkenpeistlc
kdlpsyfessllfynnsvftekdiknvqvmsasikkqdensigqhglginsmysfsdcpc
ilsgeylmifdpfvthigqsinyshgakykisqykpylkyfkpfqhlqsifdfdlddgkf
ngtiirlplrkiqndgnrhispqkwneanvldylkrvkasnlenlmfftnidslevsilp
vgskkleqqisihkksslslitnqynnlmniptqvseytftiipsekskitekyiigqvi
eedfkdlseypdnkalkflsiynnekrkpvggvafklpdfslpeykftpksfcylpykdl
isnipvhihanfsttssrdilenakssnlynieeilskkdnqviqqsdsfqlcwnqlivt
eiiaplyintltlfknkyikgndidkiskyhnfyysrfpvlsdslsnhsilemlankfys
lvnsensdvfihypgveikkspkdtfyaelsfflsnaysdsilkcishigfnvnvcpfki
yfsfkslpnwlteytisnalkgenlnpqvintqdianiilyfskmpeyldncqvlifndk
trgfvnienkiinqlynqthfemtqdvldlkfidreltdiikmlldplildslktinifd
fnyvdfyfhyllpnfnilsaeknisflnklleyftfeknsdyksinhpliseerinklkg
skvfpfvkkgvqefslisklsdptfkqydfildypdlehskenikifrclgirdklkknd
ivyqfkkissevysgntplgnln*kstsimeirkmcqsi**ivrikyctsqrk*yhwq*k
niiridanypkyaniamkififq*nyfkm*ilnthqdiiklivkkylkisliflqtseig
n*fk*mvi*lqtpksykc*yrcvviwktiqeishqnl*kefkvsqy*tlqhllnlqi*sw
elmqiv*dhfsifylqtfqlldifsvklv**n*m*trl*wd*idf*mmrlilskeldr*a
ifmdyylvlvvnwkhlkmnthhyqfslkkdl*nhrikfirsmvyplkelilnhfmksmiq
lkiimnnwvf*nylqy*ekn*tmisptlkmkiwriqlesi*iplskkiknlfqeliiys*
aes*ilqlnqetlephsf*mnkislntqkpkcyydqsnstlylekeitkneafnylfnst
glnvtssivlnlerefvndeptvdpvdnflaqtnqnvvvnlvddnhsalirknlcrhynt
ialrnreaaetlfdnqslirqsiyfyyistdmllrsllvfyydnnvpgslsitrmrdlls
rnstttiphipdrfnkfeeahlknsninrndlvefrsillny*tfqsnxn**NINK---

---DSIGKFLNTFIKENQQFISRVNHLQLSQILKITVKSGDIRTKFILNGQDITKNSKTK
CFYDQPNSTLYLEKGISKSEAFNYLFNSTGLNVNSSIVSNLEREFVNDEPIVDPVDNFLA
QTNQNVVVNSIDDNHTTLIQKIHCRHYNTIALRNREAAETLFYNQSLIRQSIYFYYVSTD
MLLRSLLVFYFDNNIPDSLSITRMRDVLSRKSTTTIPHIPDRFNDFKEAHLKTTNINSND
LIEFRSITSQLLNISNQMRINRK*inniltfftstkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ic*i*ksnlh*ssclpqefidlghsalhnkisentasklsitklsqliqsqvafensfgq
keelvdrlkqilrdykvevflnemvqnahdagstevklildcnslkqqflkenpeistlc
kdlpsyfessllfynnsvftekdiknvqvmsasikkqdensigqhglginsmysfsdcpc
ilsgeylmifdpfvthigqsinyshgakykisqykpylkyfkpfqhlqsifdfdlddgkf
ngtiirlplrkiqndgnrhispqkwneanvldylkrvkasnlenlmfftnidslevsilp
vgskkleqqisihkksslslitnqynnlmniptqvseytftiipsekskitekyiigqvi
eedfkdlseypdnkalkflsiynnekrkpvggvafklpdfslpeykftpksfcylpykdl
isnipvhihanfsttssrdilenakssnlynieeilskkdnqviqqsdsfqlcwnqlivt
eiiaplyintltlfknkyikgndidkiskyhnfyysrfpvlsdslsnhsilemlankfys
lvnsensdvfihypgveikkspkdtfyaelsfflsnaysdsilkcishigfnvnvcpfki
yfsfkslpnwlteytisnalkgenlnpqvintqdianiilyfskmpeyldncqvlifndk
trgfvnienkiinqlynqthfemtqdvldlkfidreltdiikmlldplildslktinifd
fnyvdfyfhyllpnfnilsaeknisflnklleyftfeknsdyksinhpliseerinklkg
skvfpfvkkgvqefslisklsdptfkqydfildypdlehskenikifrclgirdklkknd
ivyqfkkissevysgntplgnln*kstsimeirkmcqsi**ivrikyctsqrk*yhwq*k
niiridanypkyaniamkififq*nyfkm*ilnthqdiiklivkkylkisliflqtseig
n*fk*mvi*lqtpksykc*yrcvviwktiqeishqnl*kefkvsqy*tlqhllnlqi*sw
elmqiv*dhfsifylqtfqlldifsvklv**n*m*trl*wd*idf*mmrlilskeldr*a
ifmdyylvlvvnwkhlkmnthhyqfslkkdl*nhrikfirsmvyplkelilnhfmksmiq
lkiimnnwvf*nylqy*ekn*tmisptlkmkiwriqlesi*iplskkiknlfqeliiys*
aes*ilqlnqetlephsf*mnkislntqkpkcyydqsnstlylekeitkneafnylfnst
glnvtssivlnlerefvndeptvdpvdnflaqtnqnvvvnlvddnhsalirknlcrhynt
ialrnreaaetlfdnqslirqsiyfyyistdmllrsllvfyydnnvpgslsitrmrdlls
rnstttiphipdrfnkfeeahlknsninrndlvefrsillny*tfqsnxn**NINK---

---riqlenf*ipllrkinnlfqeliiys*vks*klqlnqetlepnsf*mdkislktqkp
nvfminqiqlfi*kkvflkvkhsityliplv*m*tlqlyqi*kesl*mmnqlsiqliisw
lklikmwllillmttiql*skkfivdtttplh*eivkllklystinh*ldnqftftmfqq
icy*evfwffiliiifqilfqllv*emyypenqlqpyhtfqivsmiskkpt*kqqtsivm
i*lnfvqlllny*tflik*elienk*iiy*lslrqpkk

Frame B:
fvefekviyidlhvylknsli*dtvhyiikflktlhqnsvlqnfln*fkvk*hlrihldk
kkn*siv*nkfyviik*kyf*tkwfkmlmmldqqk*n*f*ivil*nnnf*kkiqr*vhyv
kifhhtlkvlyffiiiqflqkkilkmfk*cqhqlknkmkillvnmv*vlilcihsvivhv
y*vvni**fsihs*hisvnq*tihmvlnikfhntnhi*ntlnhfniynqflili*mmvns
meqsfvyhfvryktmvivilvhrngtkqmf*ii*ke*kqvi*ki*cfsqt*il*rfqyyq
wevkn*nnkfqfiknqvyh*lqtniii**ifqhkyqnihsllyhqrnqr*lknil*vk*l
kkiskiyqniqiikh*nfyqsiimkkenqlevshlnyqishflntnshqnhfviyhtki*
fqifqftfmqtfqqqvhvif*kmpnlqiyiilkryslkriik*ynnqivsnfvgin*l*l
kl*hhsilih*lfsktnilkvmi*ikfqniiisitlvsqy*vihyqiiqfskc*qisfth
**iqripmyssitlvsklkrvqkihfmqs*vssyqmhiqiqf*svlvtlvsmlmfvhlkf
ilvlshyqtg*qniqyqmp*keri*ilk**ilkilqi*yyisqkcqni*itaky*fsmik
qgvllilktk**tnyitklilk*lkmf*i*nslienlpilskcf*ilsfwihlkrltsli
stmlifistisyqisiyyqlkkifhf*tnywntlhlkktliinqstil*ypkke*in*kv
qkfflllkrvfksfl*fqnypiqhlnnmisy*iiqi*siqkkiskyldv*vfetn*rkmi
lytnskrfhqkfivethlwetlierarllwksekcvkvfnellelnivpvkesniigsrk
islglmpttrsmptsl*rslffskttsrcry*iptri*sn*l*kni*kfr*ssykhqrle
idsskw*fsyrpqnhtnvnidv*sfgklyrkflirtcrknskypsiklyniy*iykyshg
n*cklfetifqyftsklfnf*tffq*nwcnrikckhdcngik*ifr**d*yyrrnwivkl
slwiii*fw**igni*k*tliitsfh*kriyktiesslfvrwcth*kn*y*iil*np*fn
*r*l*tigcfriifsikrrtrq*shqp*k*rfggfnwkvfeypyqrksriyfks*sstvk
qnleyys*irrh*nhihfk*tkyh*ilknpnviminqiqlfi*rkkllkmkhsitylipl
v*m*plqly*i*kesl*mmnqlsiqliiswlklikmwlli*lmttiql*sekifvdtttp
lh*eivkllklysttnr*sdnlytftifqqicy*evfwffimiimfqvlfqllv*eiyyp
etqpqpyhtfqivltnskrht*ktqi*ivmi*lnfvqyfstikhfnqmxisri*in---

---gfnwkifkyly*gkstiyfks*sstvesnlenys*irrh*nqihfkwtryh*klknq
mfl*stkfnslfrkryf*k*siqlpi*fhwfecklfnciksrkrvck**tncrss**flg
sn*skcgc*fy**qpynfnpknsl*tlqhhctkks*sc*nfilqsiin*tinllllcfnr
yatkksfgflf***ysrfsfnysyerciiqkinynhtthsrsfq*fqrsplknnkhq***
sn*isfnyfstikhf*snen**kink*yinflyvnqkk

Frame C:
llnlkk*ftlifmftsrih*frtqcit**nf*khciktqyyktfsidsksssi*efiwtk
rrisrsfetnft*l*srsifkrngskcs*cwinrskinfrl*ffkttifkrksrdkytm*
rssiil*kfftfl**fsfyrkry*kcssnvsin*ktr*kfywstwfry*fyvfiq*lsmy
ikw*ifddfrsirntyrsinklftwc*i*nftiqtifkil*tistftinf*f*fr*w*iq
wnnhsftts*dtkrw*ssy*stemerskcfrlfkksksk*frkfnvfhkhrffrgfnits
gk*kirttnfns*kikfiinykpi**fneysntsiriyihyytireikdn*kiyyrssn*
rrfqrsirisr**sieifinl***kkktswrcri*itrflts*iqihtkiillftiqrfn
fkyssshscklfnnkft*yfrkcqifkfi*y*rdtl*kg*ssnttir*fptllesincn*
nysttly*yinsfqkqiy*r**yr*nfkis*flllsfpsik*fiiksfnsrnvsk*vlli
skfrefrcihplpwcrn*keskryilcrvefllikcifrfnfkvy*shwfqc*clsi*nl
f*f*vttklvnriynikclerrefksssnkysryckyniiflknarisr*lpsidfq**n
kgfc*y*kqnnkpti*pnsf*ndsrcfrfkih**rtyryyqnafrsshfgft*nd*hl*f
qlc*flfplsltkfqyiis*kkyfifkqiigilyi*kkl*l*inqpssnirrknk*tkrf
ksfsfc*kgcsrvffnfkiirsni*ti*fhirlsrfrafkrkyqni*mfrysrqikek*y
cipiqkdfirsl*wkhtfgkp*lkehvyygnqknvskylmnc*n*ilyqskkvislavek
yh*d*cqlpevcqhryedlyfsvkllqdvdikyppgynqidcekifenfvnlltnirdwk
liqvngnlvtdpkiiqmlismcshlenytgnfsselveriqsipvlnsttsieftnivmg
tnanclrpffnilppnfstfrhffskigvielnvntivmglnrflddeintiegigslsy
lygllfsfgseletfknehsslpvftkkgfikpsnqvysfdgvpikrintesfyeihdsi
kdnyeqlgvlelssvlreeldndltnlenedledsigkylntlikenqefisrvnhlqls
rilnitvksgdirttfilneqnitkysktqmll*sikfnslfrerny*k*siqlpi*fhw
fecnlfnciksrkrvck**tncrss**flgsn*skcgc*fs**qpfsfnpkksl*tlqhh
ctkks*sc*nfirqpivnqtiyilllyfnryatkksfgfll***csrfsfnysyerfiiq
klnhnhtthsrsf*qirrgtleklkyks**ss*isfntsqllnisik*xlveyk*---

---DSIGKFLNTFIKENQQFISRVNHLQLSQILKITVKSGDIRTKFILNGQDITKNSKTK
CFYDQPNSTLYLEKGISKSEAFNYLFNSTGLNVNSSIVSNLEREFVNDEPIVDPVDNFLA
QTNQNVVVNSIDDNHTTLIQKIHCRHYNTIALRNREAAETLFYNQSLIRQSIYFYYVSTD
MLLRSLLVFYFDNNIPDSLSITRMRDVLSRKSTTTIPHIPDRFNDFKEAHLKTTNINSND
LIEFRSITSQLLNISNQMRINRK*inniltfftstkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10902-1 (Contig-U10902-1Q)
/CSM_Contig/Contig-U10902-1Q.Seq.d
(5146 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Conti... 1.004e+04 0.0
Contig-U12606-1 (Contig-U12606-1Q) /CSM_Contig/Conti... 331 4e-90
Contig-U11737-1 (Contig-U11737-1Q) /CSM_Contig/Conti... 42 0.006
Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti... 40 0.024
Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Conti... 40 0.024
Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Conti... 40 0.024
Contig-U10958-1 (Contig-U10958-1Q) /CSM_Contig/Conti... 40 0.024
Contig-U08795-1 (Contig-U08795-1Q) /CSM_Contig/Conti... 40 0.024
Contig-U04436-1 (Contig-U04436-1Q) /CSM_Contig/Conti... 40 0.024
Contig-U12593-1 (Contig-U12593-1Q) /CSM_Contig/Conti... 38 0.093

>Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Contig-U10902-1Q.Seq.d
Length = 5146

Score = 1.004e+04 bits (5062), Expect = 0.0
Identities = 5123/5137 (99%)
Strand = Plus / Plus


Query: 1 atttgttgaatttgaaaaagtaatttacattgatcttcatgtttacctcaagaattcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttgttgaatttgaaaaagtaatttacattgatcttcatgtttacctcaagaattcatt 60


Query: 61 gatttaggacacagtgcattacataataaaatttctgaaaacactgcatcaaaactcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatttaggacacagtgcattacataataaaatttctgaaaacactgcatcaaaactcagt 120


Query: 121 attacaaaactttctcaattgattcaaagtcaagtagcatttgagaattcatttggacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attacaaaactttctcaattgattcaaagtcaagtagcatttgagaattcatttggacaa 180


Query: 181 aaagaagaattagtcgatcgtttgaaacaaattttacgtgattataaagtagaagtattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagaagaattagtcgatcgtttgaaacaaattttacgtgattataaagtagaagtattt 240


Query: 241 ttaaacgaaatggttcaaaatgctcatgatgctggatcaacagaagtaaaattaatttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaaacgaaatggttcaaaatgctcatgatgctggatcaacagaagtaaaattaatttta 300


Query: 301 gattgtaattctttaaaacaacaatttttaaaagaaaatccagagataagtacactatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gattgtaattctttaaaacaacaatttttaaaagaaaatccagagataagtacactatgt 360


Query: 361 aaagatcttccatcatactttgaaagttctttacttttttataataattcagtttttaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaagatcttccatcatactttgaaagttctttacttttttataataattcagtttttaca 420


Query: 421 gaaaaagatattaaaaatgttcaagtaatgtcagcatcaattaaaaaacaagatgaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaaaagatattaaaaatgttcaagtaatgtcagcatcaattaaaaaacaagatgaaaat 480


Query: 481 tctattggtcaacatggtttaggtattaattctatgtattcattcagtgattgtccatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctattggtcaacatggtttaggtattaattctatgtattcattcagtgattgtccatgt 540


Query: 541 atattaagtggtgaatatttgatgattttcgatccattcgtaacacatatcggtcaatca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atattaagtggtgaatatttgatgattttcgatccattcgtaacacatatcggtcaatca 600


Query: 601 ataaactattcacatggtgctaaatataaaatttcacaatacaaaccatatttaaaatac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ataaactattcacatggtgctaaatataaaatttcacaatacaaaccatatttaaaatac 660


Query: 661 tttaaaccatttcaacatttacaatcaatttttgattttgatttagatgatggtaaattc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttaaaccatttcaacatttacaatcaatttttgattttgatttagatgatggtaaattc 720


Query: 721 aatggaacaatcattcgtttaccacttcgtaagatacaaaacgatggtaatcgtcatatt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aatggaacaatcattcgtttaccacttcgtaagatacaaaacgatggtaatcgtcatatt 780


Query: 781 agtccacagaaatggaacgaagcaaatgttttagattatttaaaaagagtaaaagcaagt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agtccacagaaatggaacgaagcaaatgttttagattatttaaaaagagtaaaagcaagt 840


Query: 841 aatttagaaaatttaatgtttttcacaaacatagattctttagaggtttcaatattacca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aatttagaaaatttaatgtttttcacaaacatagattctttagaggtttcaatattacca 900


Query: 901 gtgggaagtaaaaaattagaacaacaaatttcaattcataaaaaatcaagtttatcatta 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtgggaagtaaaaaattagaacaacaaatttcaattcataaaaaatcaagtttatcatta 960


Query: 961 attacaaaccaatataataatttaatgaatattccaacacaagtatcagaatatacattc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 attacaaaccaatataataatttaatgaatattccaacacaagtatcagaatatacattc 1020


Query: 1021 actattataccatcagagaaatcaaagataactgaaaaatatattataggtcaagtaatt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 actattataccatcagagaaatcaaagataactgaaaaatatattataggtcaagtaatt 1080


Query: 1081 gaagaagatttcaaagatctatcagaatatccagataataaagcattgaaatttttatca 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gaagaagatttcaaagatctatcagaatatccagataataaagcattgaaatttttatca 1140


Query: 1141 atctataataatgaaaaaagaaaaccagttggaggtgtcgcatttaaattaccagatttc 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 atctataataatgaaaaaagaaaaccagttggaggtgtcgcatttaaattaccagatttc 1200


Query: 1201 tcacttcctgaatacaaattcacaccaaaatcattttgttatttaccatacaaagattta 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tcacttcctgaatacaaattcacaccaaaatcattttgttatttaccatacaaagattta 1260


Query: 1261 atttcaaatattccagttcacattcatgcaaacttttcaacaacaagttcacgtgatatt 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 atttcaaatattccagttcacattcatgcaaacttttcaacaacaagttcacgtgatatt 1320


Query: 1321 ttagaaaatgccaaatcttcaaatttatataatattgaagagatactctctaaaaaggat 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ttagaaaatgccaaatcttcaaatttatataatattgaagagatactctctaaaaaggat 1380


Query: 1381 aatcaagtaatacaacaatcagatagtttccaactttgttggaatcaattaattgtaact 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 aatcaagtaatacaacaatcagatagtttccaactttgttggaatcaattaattgtaact 1440


Query: 1441 gaaattatagcaccactctatattaatacattaactcttttcaaaaacaaatatattaaa 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 gaaattatagcaccactctatattaatacattaactcttttcaaaaacaaatatattaaa 1500


Query: 1501 ggtaatgatatagataaaatttcaaaatatcataatttctattactctcgtttcccagta 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ggtaatgatatagataaaatttcaaaatatcataatttctattactctcgtttcccagta 1560


Query: 1561 ttaagtgattcattatcaaatcattcaattctcgaaatgttagcaaataagttttactca 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 ttaagtgattcattatcaaatcattcaattctcgaaatgttagcaaataagttttactca 1620


Query: 1621 ttagtaaattcagagaattccgatgtattcatccattaccctggtgtcgaaattaaaaag 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ttagtaaattcagagaattccgatgtattcatccattaccctggtgtcgaaattaaaaag 1680


Query: 1681 agtccaaaagatacattttatgcagagttgagtttcttcttatcaaatgcatattcagat 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 agtccaaaagatacattttatgcagagttgagtttcttcttatcaaatgcatattcagat 1740


Query: 1741 tcaattttaaagtgtattagtcacattggtttcaatgttaatgtttgtccatttaaaatt 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 tcaattttaaagtgtattagtcacattggtttcaatgttaatgtttgtccatttaaaatt 1800


Query: 1801 tattttagttttaagtcactaccaaactggttaacagaatatacaatatcaaatgccttg 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 tattttagttttaagtcactaccaaactggttaacagaatatacaatatcaaatgccttg 1860


Query: 1861 aaaggagagaatttaaatcctcaagtaataaatactcaagatattgcaaatataatatta 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 aaaggagagaatttaaatcctcaagtaataaatactcaagatattgcaaatataatatta 1920


Query: 1921 tatttctcaaaaatgccagaatatctagataactgccaagtattgattttcaatgataaa 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 tatttctcaaaaatgccagaatatctagataactgccaagtattgattttcaatgataaa 1980


Query: 1981 acaaggggttttgttaatattgaaaacaaaataataaaccaactatataaccaaactcat 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 acaaggggttttgttaatattgaaaacaaaataataaaccaactatataaccaaactcat 2040


Query: 2041 tttgaaatgactcaagatgttttagatttaaaattcattgatagagaacttaccgatatt 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 tttgaaatgactcaagatgttttagatttaaaattcattgatagagaacttaccgatatt 2100


Query: 2101 atcaaaatgcttttagatcctctcattttggattcacttaaaacgattaacatctttgat 2160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 atcaaaatgcttttagatcctctcattttggattcacttaaaacgattaacatctttgat 2160


Query: 2161 ttcaactatgttgatttttatttccactatctcttaccaaatttcaatatattatcagct 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 ttcaactatgttgatttttatttccactatctcttaccaaatttcaatatattatcagct 2220


Query: 2221 gnnnnnnntatttcatttttaaacaaattattggaatactttacatttgnnnnnnnctct 2280
| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2221 gaaaaaaatatttcatttttaaacaaattattggaatactttacatttgaaaaaaactct 2280


Query: 2281 gattataaatcaatcaaccatcctctaatatccgaagaaagaataaataaactaaaaggt 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 gattataaatcaatcaaccatcctctaatatccgaagaaagaataaataaactaaaaggt 2340


Query: 2341 tcaaaagtttttccttttgttaaaaagggtgttcaagagttttctttaatttcaaaatta 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 tcaaaagtttttccttttgttaaaaagggtgttcaagagttttctttaatttcaaaatta 2400


Query: 2401 tccgatccaacatttaaacaatatgatttcatattagattatccagatttagagcattca 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 tccgatccaacatttaaacaatatgatttcatattagattatccagatttagagcattca 2460


Query: 2461 aaagaaaatatcaaaatatttagatgtttaggtattcgagacaaattaaagaaaaatgat 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 aaagaaaatatcaaaatatttagatgtttaggtattcgagacaaattaaagaaaaatgat 2520


Query: 2521 attgtataccaattcaaaaagatttcatcagaagtttatagtggaaacacacctttggga 2580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521 attgtataccaattcaaaaagatttcatcagaagtttatagtggaaacacacctttggga 2580


Query: 2581 aaccttaattgaaagagcacgtctattatggaaatcagaaaaatgtgtcaaagtatttaa 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2581 aaccttaattgaaagagcacgtctattatggaaatcagaaaaatgtgtcaaagtatttaa 2640


Query: 2641 tgaattgttagaattaaatattgtaccagtcaaagaaagtaatatcattggcagtagaaa 2700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 tgaattgttagaattaaatattgtaccagtcaaagaaagtaatatcattggcagtagaaa 2700


Query: 2701 aatatcattaggattgatgccaactacccgaagtatgccaacatcgctatgaagatcttt 2760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 aatatcattaggattgatgccaactacccgaagtatgccaacatcgctatgaagatcttt 2760


Query: 2761 atttttcagtaaaactacttcaagatgtagatattaaatacccaccaggatataatcaaa 2820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 atttttcagtaaaactacttcaagatgtagatattaaatacccaccaggatataatcaaa 2820


Query: 2821 ttgattgtgaaaaaatatttgaaaatttcgttaatcttcttacaaacatcagagattgga 2880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2821 ttgattgtgaaaaaatatttgaaaatttcgttaatcttcttacaaacatcagagattgga 2880


Query: 2881 aattgattcaagtaaatggtaatttagttacagaccccaaaatcatacaaatgttaatat 2940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 aattgattcaagtaaatggtaatttagttacagaccccaaaatcatacaaatgttaatat 2940


Query: 2941 cgatgtgtagtcatttggaaaactatacaggaaatttctcatcagaacttgtagaaagaa 3000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2941 cgatgtgtagtcatttggaaaactatacaggaaatttctcatcagaacttgtagaaagaa 3000


Query: 3001 ttcaaagtatcccagtattaaactctacaacatctattgaatttacaaatatagtcatgg 3060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3001 ttcaaagtatcccagtattaaactctacaacatctattgaatttacaaatatagtcatgg 3060


Query: 3061 gaactaatgcaaattgtttgagaccatttttcaatattttacctccaaacttttcaactt 3120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3061 gaactaatgcaaattgtttgagaccatttttcaatattttacctccaaacttttcaactt 3120


Query: 3121 ttagacattttttcagtaaaattggtgtaatagaattaaatgtaaacacgattgtaatgg 3180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3121 ttagacattttttcagtaaaattggtgtaatagaattaaatgtaaacacgattgtaatgg 3180


Query: 3181 gattaaatagatttttagatgatgagattaatactatcgaaggaattggatcgttaagct 3240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3181 gattaaatagatttttagatgatgagattaatactatcgaaggaattggatcgttaagct 3240


Query: 3241 atctttatggattattatttagttttggtagtgaattggaaacatttaaaaatgaacact 3300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3241 atctttatggattattatttagttttggtagtgaattggaaacatttaaaaatgaacact 3300


Query: 3301 catcattaccagttttcactaaaaaaggatttataaaaccatcgaatcaagtttattcgt 3360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3301 catcattaccagttttcactaaaaaaggatttataaaaccatcgaatcaagtttattcgt 3360


Query: 3361 tcgatggtgtacccattaaaagaattaatactgaatcattttatgaaatccatgattcaa 3420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3361 tcgatggtgtacccattaaaagaattaatactgaatcattttatgaaatccatgattcaa 3420


Query: 3421 ttaaagataattatgaacaattgggtgttttagaattatcttcagtattaagagaagaac 3480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3421 ttaaagataattatgaacaattgggtgttttagaattatcttcagtattaagagaagaac 3480


Query: 3481 tagacaatgatctcaccaaccttgaaaatgaagatttggaggattcaattggaaagtatt 3540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3481 tagacaatgatctcaccaaccttgaaaatgaagatttggaggattcaattggaaagtatt 3540


Query: 3541 tgaatacccttatcaaagaaaatcaagaatttatttcaagagttaatcatctacagttaa 3600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3541 tgaatacccttatcaaagaaaatcaagaatttatttcaagagttaatcatctacagttaa 3600


Query: 3601 gcagaatcttgaatattacagttaaatcaggagacattagaaccacattcattttaaatg 3660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3601 gcagaatcttgaatattacagttaaatcaggagacattagaaccacattcattttaaatg 3660


Query: 3661 aacaaaatatcactaaatactcaaaaacccaaatgttattatgatcaatcaaattcaact 3720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3661 aacaaaatatcactaaatactcaaaaacccaaatgttattatgatcaatcaaattcaact 3720


Query: 3721 ctttatttagagaaagaaattactaaaaatgaagcattcaattacctatttaattccact 3780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3721 ctttatttagagaaagaaattactaaaaatgaagcattcaattacctatttaattccact 3780


Query: 3781 ggtttgaatgtaacctcttcaattgtattaaatctagaaagagagtttgtaaatgatgaa 3840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3781 ggtttgaatgtaacctcttcaattgtattaaatctagaaagagagtttgtaaatgatgaa 3840


Query: 3841 ccaactgtcgatccagttgataatttcttggctcaaactaatcaaaatgtggttgttaat 3900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3841 ccaactgtcgatccagttgataatttcttggctcaaactaatcaaaatgtggttgttaat 3900


Query: 3901 ttagttgatgacaaccattcagctttaatccgaaaaaatctttgtagacactacaacacc 3960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 ttagttgatgacaaccattcagctttaatccgaaaaaatctttgtagacactacaacacc 3960


Query: 3961 attgcactaagaaatcgtgaagctgctgaaactttattcgacaaccaatcgttaatcaga 4020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3961 attgcactaagaaatcgtgaagctgctgaaactttattcgacaaccaatcgttaatcaga 4020


Query: 4021 caatctatatacttttactatatttcaacagatatgctactaagaagtcttttggttttt 4080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4021 caatctatatacttttactatatttcaacagatatgctactaagaagtcttttggttttt 4080


Query: 4081 tattatgataataatgttccaggttctctttcaattactcgtatgagagatttattatcc 4140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4081 tattatgataataatgttccaggttctctttcaattactcgtatgagagatttattatcc 4140


Query: 4141 agaaactcaaccacaaccataccacacattccagatcgttttaacaaattcgaagaggca 4200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4141 agaaactcaaccacaaccataccacacattccagatcgttttaacaaattcgaagaggca 4200


Query: 4201 cacttgaaaaactcaaatataaatcgtaatgatctagttgaatttcgttcaatacttctc 4260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201 cacttgaaaaactcaaatataaatcgtaatgatctagttgaatttcgttcaatacttctc 4260


Query: 4261 aactattaaacatttcaatcaaatganaattagtagaatataaataaatnnnnnnnnnna 4320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4261 aactattaaacatttcaatcaaatganaattagtagaatataaataaatnnnnnnnnnna 4320


Query: 4321 ggattcaattggaaaatttttaaatacctttattaaggaaaatcaacaatttatttcaag 4380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4321 ggattcaattggaaaatttttaaatacctttattaaggaaaatcaacaatttatttcaag 4380


Query: 4381 agttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcaggagacattag 4440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4381 agttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcaggagacattag 4440


Query: 4441 aaccaaattcattttaaatggacaagatatcactaaaaactcaaaaaccaaatgttttta 4500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4441 aaccaaattcattttaaatggacaagatatcactaaaaactcaaaaaccaaatgttttta 4500


Query: 4501 tgatcaaccaaattcaactctttatttagaaaaaggtatttctaaaagtgaagcattcaa 4560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4501 tgatcaaccaaattcaactctttatttagaaaaaggtatttctaaaagtgaagcattcaa 4560


Query: 4561 ttacctatttaattccactggtttgaatgtaaactcttcaattgtatcaaatctagaaag 4620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561 ttacctatttaattccactggtttgaatgtaaactcttcaattgtatcaaatctagaaag 4620


Query: 4621 agagtttgtaaatgatgaaccaattgtcgatccagttgataatttcttggctcaaactaa 4680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4621 agagtttgtaaatgatgaaccaattgtcgatccagttgataatttcttggctcaaactaa 4680


Query: 4681 tcaaaatgtggttgttaattctattgatgacaaccatacaactttaatccaaaaaattca 4740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4681 tcaaaatgtggttgttaattctattgatgacaaccatacaactttaatccaaaaaattca 4740


Query: 4741 ttgtagacactacaacaccattgcactaagaaatcgtgaagctgctgaaactttattcta 4800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4741 ttgtagacactacaacaccattgcactaagaaatcgtgaagctgctgaaactttattcta 4800


Query: 4801 caatcaatcattaattagacaatcaatttacttttactatgtttcaacagatatgctact 4860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4801 caatcaatcattaattagacaatcaatttacttttactatgtttcaacagatatgctact 4860


Query: 4861 aagaagtcttttggttttttattttgataataatattccagattctctttcaattactcg 4920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4861 aagaagtcttttggttttttattttgataataatattccagattctctttcaattactcg 4920


Query: 4921 tatgagagatgtattatccagaaaatcaactacaaccataccacacattccagatcgttt 4980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4921 tatgagagatgtattatccagaaaatcaactacaaccataccacacattccagatcgttt 4980


Query: 4981 caatgatttcaaagaagcccacttaaaaacaacaaacatcaatagtaatgatctaattga 5040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 caatgatttcaaagaagcccacttaaaaacaacaaacatcaatagtaatgatctaattga 5040


Query: 5041 atttcgttcaattacttctcaactattaaacatttctaatcaaatgagaattaatagaaa 5100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 atttcgttcaattacttctcaactattaaacatttctaatcaaatgagaattaatagaaa 5100


Query: 5101 ataaataaataatatattaactttctttacgtcaacc 5137
|||||||||||||||||||||||||||||||||||||
Sbjct: 5101 ataaataaataatatattaactttctttacgtcaacc 5137


Score = 36.2 bits (18), Expect = 0.37
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1908 aaatataatattatattt 1925
||||||||||||||||||
Sbjct: 1925 aaatataatattatattt 1908


>Contig-U12606-1 (Contig-U12606-1Q) /CSM_Contig/Contig-U12606-1Q.Seq.d
Length = 833

Score = 331 bits (167), Expect = 4e-90
Identities = 308/354 (87%), Gaps = 7/354 (1%)
Strand = Plus / Plus


Query: 3500 ccttgaaaatgaagatttggaggattcaattggaaagtatttgaatacccttatcaaaga 3559
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct: 1 ccttgaaaatgaagatttggagaattcaattggaaagtttttaaatacccttatcaaaga 60


Query: 3560 aaatcaagaatttatttcaagagttaatcatctacagttaagcagaatcttgaatattac 3619
|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct: 61 aaatcaagaatttatttcaagagtaaatcatcttcagttaagcggaatcttgaatattac 120


Query: 3620 agttaaatcaggagacattagaaccacattcattttaaatgaacaaaatatcactaaata 3679
||||||| ||||| | |||||||| | ||||||||| ||| | || |||||||||||
Sbjct: 121 agttaaaacaggatatattagaactaaattcatttttaatcgaaaagatatcactaaaac 180


Query: 3680 ctcaaaaacccaaatgttattatgatcaatcaaattcaactctttat------ttagaga 3733
|||||||| ||||||| | ||||||||| | |||||||||||||||| |||| |
Sbjct: 181 ctcaaaaa-ccaaatgcttttatgatcatttaaattcaactctttatataggcatagaaa 239


Query: 3734 aagaaattactaaaaatgaagcattcaattacctatttaattccactggtttgaatgtaa 3793
||| ||||| | || | |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 240 aaggtattaccataagtaaagcattcaaatacctatttaactccactggtttgaatgtaa 299


Query: 3794 cctcttcaattgtattaaatctagaaagagagtttgtaaatgatgaaccaactg 3847
| | ||||| |||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct: 300 acccctcaatggtatcaaatctaaaaagagagtttgttaatgatgaaccaactg 353


Score = 317 bits (160), Expect = 7e-86
Identities = 285/327 (87%), Gaps = 6/327 (1%)
Strand = Plus / Plus


Query: 4323 attcaattggaaaatttttaaatacctttattaaggaaaatcaacaatttatttcaagag 4382
||||||||||||| |||||||||||| |||| || ||||||||| |||||||||||||||
Sbjct: 24 attcaattggaaagtttttaaatacccttatcaaagaaaatcaagaatttatttcaagag 83


Query: 4383 ttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcaggagacattagaa 4442
| |||||||| ||||| || ||||||||| |||||||||||| ||||| | |||||||
Sbjct: 84 taaatcatcttcagttaagcggaatcttgaatattacagttaaaacaggatatattagaa 143


Query: 4443 ccaaattcattttaaatggacaagatatcactaaaaactcaaaaaccaaatgtttttatg 4502
| ||||||||||| ||| || ||||||||||||||| ||||||||||||||| |||||||
Sbjct: 144 ctaaattcatttttaatcgaaaagatatcactaaaacctcaaaaaccaaatgcttttatg 203


Query: 4503 atcaaccaaattcaactctttat------ttagaaaaaggtatttctaaaagtgaagcat 4556
|||| |||||||||||||||| |||||||||||||| | | |||| ||||||
Sbjct: 204 atcatttaaattcaactctttatataggcatagaaaaaggtattaccataagtaaagcat 263


Query: 4557 tcaattacctatttaattccactggtttgaatgtaaactcttcaattgtatcaaatctag 4616
|||| ||||||||||| ||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 264 tcaaatacctatttaactccactggtttgaatgtaaacccctcaatggtatcaaatctaa 323


Query: 4617 aaagagagtttgtaaatgatgaaccaa 4643
||||||||||||| |||||||||||||
Sbjct: 324 aaagagagtttgttaatgatgaaccaa 350


Score = 103 bits (52), Expect = 2e-21
Identities = 177/218 (81%), Gaps = 3/218 (1%)
Strand = Plus / Plus


Query: 4726 aatccaaaaaattcattgtagacactacaacaccattgcactaagaaatcgtgaagctgc 4785
||||||||||| ||| |||||||||||||||||||||||| |||||||| | || |||
Sbjct: 412 aatccaaaaaaatcaatgtagacactacaacaccattgcattaagaaattttcaacttgc 471


Query: 4786 tgaaactttattctacaatcaatcattaattagacaatcaatttacttttactatgtttc 4845
||| |||||| || ||||||||||||| || ||| || | ||| ||||||||||||
Sbjct: 472 tgatactttactcaacaatcaatcatttataagagaagcctcataccattactatgtttc 531


Query: 4846 aacagatatgctactaagaagtcttttggttttttattttgataataatattccagattc 4905
|||||| ||| | | |||||||||||||||||| ||| ||||| |||| || || |
Sbjct: 532 aacagaaatgtcaatgagaagtcttttggtttttaatt---ataatgatatcccctatgc 588


Query: 4906 tctttcaattactcgtatgagagatgtattatccagaa 4943
| |||||||||||||| | |||| | ||||||| ||||
Sbjct: 589 tttttcaattactcgtttaagaggtttattatctagaa 626


Score = 79.8 bits (40), Expect = 3e-14
Identities = 130/160 (81%)
Strand = Plus / Plus


Query: 3927 aatccgaaaaaatctttgtagacactacaacaccattgcactaagaaatcgtgaagctgc 3986
||||| |||||||| |||||||||||||||||||||||| |||||||| | || |||
Sbjct: 412 aatccaaaaaaatcaatgtagacactacaacaccattgcattaagaaattttcaacttgc 471


Query: 3987 tgaaactttattcgacaaccaatcgttaatcagacaatctatatacttttactatatttc 4046
||| |||||| || |||| ||||| || || ||| || | |||| ||||||| ||||
Sbjct: 472 tgatactttactcaacaatcaatcatttataagagaagcctcataccattactatgtttc 531


Query: 4047 aacagatatgctactaagaagtcttttggttttttattat 4086
|||||| ||| | | |||||||||||||||||| |||||
Sbjct: 532 aacagaaatgtcaatgagaagtcttttggtttttaattat 571


Score = 38.2 bits (19), Expect = 0.093
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 4155 aaccataccacacattccagatc 4177
|||||||||||| ||||||||||
Sbjct: 643 aaccataccacagattccagatc 665


Score = 34.2 bits (17), Expect = 1.5
Identities = 35/41 (85%)
Strand = Plus / Plus


Query: 5041 atttcgttcaattacttctcaactattaaacatttctaatc 5081
||||||||||||| | |||| |||||||||| |||||||
Sbjct: 730 atttcgttcaatttcaaatcaattattaaacatctctaatc 770


>Contig-U11737-1 (Contig-U11737-1Q) /CSM_Contig/Contig-U11737-1Q.Seq.d
Length = 2687

Score = 42.1 bits (21), Expect = 0.006
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 5099 aaataaataaataatatatta 5119
|||||||||||||||||||||
Sbjct: 58 aaataaataaataatatatta 38


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,585
Number of Sequences: 6905
Number of extensions: 100585
Number of successful extensions: 12400
Number of sequences better than 10.0: 497
length of query: 5146
length of database: 5,674,871
effective HSP length: 17
effective length of query: 5129
effective length of database: 5,557,486
effective search space: 28504345694
effective search space used: 28504345694
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Contig-U10902-1Q.Seq.d
(5146 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ355316) Dictyostelium discoideum cDNA clone:dda56m10, 3' ... 1511 0.0 1
(BJ348765) Dictyostelium discoideum cDNA clone:dda34e08, 3' ... 1495 0.0 1
(BJ348406) Dictyostelium discoideum cDNA clone:dda33j06, 3' ... 1483 0.0 1
(BJ354345) Dictyostelium discoideum cDNA clone:dda53g10, 3' ... 1477 0.0 1
(BJ357798) Dictyostelium discoideum cDNA clone:dda64a23, 3' ... 1417 0.0 1
(BJ349215) Dictyostelium discoideum cDNA clone:dda35c23, 3' ... 1384 0.0 1
(BJ384013) Dictyostelium discoideum cDNA clone:ddc47n23, 3' ... 1380 0.0 1
(BJ348693) Dictyostelium discoideum cDNA clone:dda34d05, 3' ... 1368 0.0 3
(BJ336272) Dictyostelium discoideum cDNA clone:dda53g10, 5' ... 1249 0.0 1
(BJ357559) Dictyostelium discoideum cDNA clone:dda63n20, 3' ... 1227 0.0 1
(BJ335500) Dictyostelium discoideum cDNA clone:dda50p11, 5' ... 1174 0.0 1
(BJ406036) Dictyostelium discoideum cDNA clone:dds33m23, 3' ... 1166 0.0 2
(BJ336638) Dictyostelium discoideum cDNA clone:dda54i18, 5' ... 1162 0.0 1
(BJ355575) Dictyostelium discoideum cDNA clone:dda57e14, 3' ... 1160 0.0 2
(BJ339044) Dictyostelium discoideum cDNA clone:dda63n20, 5' ... 1150 0.0 1
(BJ381726) Dictyostelium discoideum cDNA clone:ddc42o11, 3' ... 1144 0.0 2
(BJ429482) Dictyostelium discoideum cDNA clone:ddv3l13, 3' e... 1142 0.0 3
(BJ355562) Dictyostelium discoideum cDNA clone:dda57b14, 3' ... 1134 0.0 2
(BJ347894) Dictyostelium discoideum cDNA clone:dda31c18, 3' ... 1130 0.0 2
(BJ353401) Dictyostelium discoideum cDNA clone:dda50f01, 3' ... 1126 0.0 2
(BJ354747) Dictyostelium discoideum cDNA clone:dda54i18, 3' ... 1122 0.0 4
(BJ354070) Dictyostelium discoideum cDNA clone:dda52m12, 3' ... 1122 0.0 4
(BJ350137) Dictyostelium discoideum cDNA clone:dda38i19, 3' ... 1114 0.0 4
(BJ381782) Dictyostelium discoideum cDNA clone:ddc42k16, 3' ... 1092 0.0 1
(BJ433299) Dictyostelium discoideum cDNA clone:ddv21j10, 3' ... 1084 0.0 4
(BJ405712) Dictyostelium discoideum cDNA clone:dds32m16, 3' ... 1084 0.0 4
(BJ382061) Dictyostelium discoideum cDNA clone:ddc43c22, 3' ... 1072 0.0 1
(BJ439589) Dictyostelium discoideum cDNA clone:ddv40o20, 3' ... 1047 0.0 3
(BJ415083) Dictyostelium discoideum cDNA clone:ddv21j10, 5' ... 1033 0.0 2
(BJ394136) Dictyostelium discoideum cDNA clone:dds33m23, 5' ... 981 0.0 2
(BJ393801) Dictyostelium discoideum cDNA clone:dds32m16, 5' ... 971 0.0 2
(BJ395179) Dictyostelium discoideum cDNA clone:dds37m23, 5' ... 906 0.0 2
(BJ342823) Dictyostelium discoideum cDNA clone:dda15b02, 3' ... 902 0.0 2
(BJ358013) Dictyostelium discoideum cDNA clone:dda65a15, 3' ... 864 0.0 2
(BJ367416) Dictyostelium discoideum cDNA clone:ddc42k16, 5' ... 850 0.0 3
(BJ444956) Dictyostelium discoideum cDNA clone:ddv58a05, 3' ... 781 0.0 3
(BJ420946) Dictyostelium discoideum cDNA clone:ddv40o20, 5' ... 599 0.0 5
(BJ332363) Dictyostelium discoideum cDNA clone:dda38i19, 5' ... 478 0.0 3
(BJ329814) Dictyostelium discoideum cDNA clone:dda26k08, 5' ... 1007 0.0 2
(BJ327707) Dictyostelium discoideum cDNA clone:dda21o12, 5' ... 819 0.0 2
(BJ337466) Dictyostelium discoideum cDNA clone:dda57e14, 5' ... 1017 0.0 1
(BJ326410) Dictyostelium discoideum cDNA clone:dda16j12, 5' ... 535 0.0 3
(BJ419507) Dictyostelium discoideum cDNA clone:ddv36g08, 5' ... 837 0.0 3
(BJ335398) Dictyostelium discoideum cDNA clone:dda50f01, 5' ... 599 0.0 5
(BJ329483) Dictyostelium discoideum cDNA clone:dda25k03, 5' ... 916 0.0 2
(BJ333476) Dictyostelium discoideum cDNA clone:dda42k22, 5' ... 815 0.0 4
(BJ336996) Dictyostelium discoideum cDNA clone:dda55k24, 5' ... 494 0.0 3
(BJ339473) Dictyostelium discoideum cDNA clone:dda65a15, 5' ... 726 0.0 3
(BJ331195) Dictyostelium discoideum cDNA clone:dda34e08, 5' ... 944 0.0 2
(BJ336016) Dictyostelium discoideum cDNA clone:dda52m12, 5' ... 884 0.0 2
(BJ330891) Dictyostelium discoideum cDNA clone:dda33j06, 5' ... 626 0.0 4
(BJ336221) Dictyostelium discoideum cDNA clone:dda53l02, 5' ... 704 0.0 4
(BJ426125) Dictyostelium discoideum cDNA clone:ddv58a05, 5' ... 361 0.0 4
(BJ337453) Dictyostelium discoideum cDNA clone:dda57b14, 5' ... 920 0.0 1
(BJ368746) Dictyostelium discoideum cDNA clone:ddc47n23, 5' ... 745 0.0 2
(BJ337211) Dictyostelium discoideum cDNA clone:dda56l14, 5' ... 759 0.0 3
(BJ367370) Dictyostelium discoideum cDNA clone:ddc42o11, 5' ... 509 0.0 4
(BJ331528) Dictyostelium discoideum cDNA clone:dda35c23, 5' ... 650 0.0 4
(BJ334683) Dictyostelium discoideum cDNA clone:dda47m09, 5' ... 404 0.0 4
(BJ367724) Dictyostelium discoideum cDNA clone:ddc43c22, 5' ... 666 0.0 2
(BJ330429) Dictyostelium discoideum cDNA clone:dda31c18, 5' ... 509 0.0 4
(BJ411260) Dictyostelium discoideum cDNA clone:ddv3l13, 5' e... 803 0.0 2
(BJ337323) Dictyostelium discoideum cDNA clone:dda57d05, 5' ... 440 0.0 3
(BJ339270) Dictyostelium discoideum cDNA clone:dda64a23, 5' ... 831 0.0 1
(BJ337143) Dictyostelium discoideum cDNA clone:dda56m10, 5' ... 387 0.0 5
(BJ326250) Dictyostelium discoideum cDNA clone:dda15b02, 5' ... 321 0.0 3
(BJ331137) Dictyostelium discoideum cDNA clone:dda34d05, 5' ... 464 0.0 4
(BJ438087) Dictyostelium discoideum cDNA clone:ddv36g08, 3' ... 174 e-124 11
(BJ355424) Dictyostelium discoideum cDNA clone:dda57d05, 3' ... 212 e-119 10
(BJ354291) Dictyostelium discoideum cDNA clone:dda53l02, 3' ... 202 e-114 10
(BJ355148) Dictyostelium discoideum cDNA clone:dda55k24, 3' ... 174 e-107 10
(BJ407240) Dictyostelium discoideum cDNA clone:dds37m23, 3' ... 174 e-105 10
(BJ352641) Dictyostelium discoideum cDNA clone:dda47m09, 3' ... 172 e-100 10
(BJ345059) Dictyostelium discoideum cDNA clone:dda21o12, 3' ... 165 1e-97 10
(BJ353514) Dictyostelium discoideum cDNA clone:dda50p11, 3' ... 145 2e-96 8
(BJ355387) Dictyostelium discoideum cDNA clone:dda56l14, 3' ... 145 8e-96 8
(BJ347194) Dictyostelium discoideum cDNA clone:dda26k08, 3' ... 145 7e-92 8
(BJ346813) Dictyostelium discoideum cDNA clone:dda25k03, 3' ... 137 2e-89 8
(BJ343535) Dictyostelium discoideum cDNA clone:dda16j12, 3' ... 145 4e-89 8
(BJ351350) Dictyostelium discoideum cDNA clone:dda42k22, 3' ... 137 9e-89 10
(C92743) Dictyostelium discoideum slug cDNA, clone SSF181. 145 4e-62 8
(AU072822) Dictyostelium discoideum slug cDNA, clone SSF181. 139 5e-52 2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 2e-07 26
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 40 2e-07 25
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 4e-07 20
(AL844506) Plasmodium falciparum chromosome 7. 40 8e-07 15
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 44 1e-06 16
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 38 2e-06 23
(AL844507) Plasmodium falciparum chromosome 8. 38 3e-06 18
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ... 36 4e-06 27
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 7e-06 24
(CP000361) Arcobacter butzleri RM4018, complete genome. 38 9e-06 25
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 1e-05 22
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 2e-05 22
(AX344565) Sequence 16 from Patent WO0200932. 40 2e-05 22
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 2e-05 21
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 2e-05 19
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 40 2e-05 15
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 34 2e-05 23
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 38 2e-05 23

>(BJ355316) Dictyostelium discoideum cDNA clone:dda56m10, 3' end,
single read.
Length = 768

Score = 1511 bits (762), Expect = 0.0
Identities = 764/765 (99%)
Strand = Plus / Minus


Query: 4373 atttcaagagttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcagga 4432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atttcaagagttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcagga 709


Query: 4433 gacattagaaccaaattcattttaaatggacaagatatcactaaaaactcaaaaaccaaa 4492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gacattagaaccaaattcattttaaatggacaagatatcactaaaaactcaaaaaccaaa 649


Query: 4493 tgtttttatgatcaaccaaattcaactctttatttagaaaaaggtatttctaaaagtgaa 4552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgtttttatgatcaaccaaattcaactctttatttagaaaaaggtatttctaaaagtgaa 589


Query: 4553 gcattcaattacctatttaattccactggtttgaatgtaaactcttcaattgtatcaaat 4612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gcattcaattacctatttaattccactggtttgaatgtaaactcttcaattgtatcaaat 529


Query: 4613 ctagaaagagagtttgtaaatgatgaaccaattgtcgatccagttgataatttcttggct 4672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctagaaagagagtttgtaaatgatgaaccaattgtcgatccagttgataatttcttggct 469


Query: 4673 caaactaatcaaaatgtggttgttaattctattgatgacaaccatacaactttaatccaa 4732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaactaatcaaaatgtggttgttaattctattgatgacaaccatacaactttaatccaa 409


Query: 4733 aaaattcattgtagacactacaacaccattgcactaagaaatcgtgaagctgctgaaact 4792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaaattcattgtagacactacaacaccattgcactaagaaatcgtgaagctgctgaaact 349


Query: 4793 ttattctacaatcaatcattaattagacaatcaatttacttttactatgtttcaacagat 4852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttattctacaatcaatcattaattagacaatcaatttacttttactatgtttcaacagat 289


Query: 4853 atgctactaagaagtcttttggttttttattttgataataatattccagattctctttca 4912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atgctactaagaagtcttttggttttttattttgataataatattccagattctctttca 229


Query: 4913 attactcgtatgagagatgtattatccagaaaatcaactacaaccataccacacattcca 4972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 attactcgtatgagagatgtattatccagaaaatcaactacaaccataccacacattcca 169


Query: 4973 gatcgtttcaatgatttcaaagaagcccacttaaaaacaacaaacatcaatagtaatgat 5032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gatcgtttcaatgatttcaaagaagcccacttaaaaacaacaaacatcaatagtaatgat 109


Query: 5033 ctaattgaatttcgttcaattacttctcaactattaaacatttctaatcaaatgagaatt 5092
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 108 ctaattgaatttcgttcaattacttctcaactattaaacatttctaatcaaatganaatt 49


Query: 5093 aatagaaaataaataaataatatattaactttctttacgtcaacc 5137
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 aatagaaaataaataaataatatattaactttctttacgtcaacc 4

Score = 733 bits (370), Expect(4) = 0.0
Identities = 466/498 (93%)
Strand = Plus / Minus


Query: 3684 aaaacccaaatgttattatgatcaatcaaattcaactctttatttagagaaagaaattac 3743
|||| ||||||||| |||||||||| |||||||||||||||||||||| |||| ||| |
Sbjct: 658 aaaaaccaaatgtttttatgatcaaccaaattcaactctttatttagaaaaaggtatttc 599


Query: 3744 taaaaatgaagcattcaattacctatttaattccactggtttgaatgtaacctcttcaat 3803
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 598 taaaagtgaagcattcaattacctatttaattccactggtttgaatgtaaactcttcaat 539


Query: 3804 tgtattaaatctagaaagagagtttgtaaatgatgaaccaactgtcgatccagttgataa 3863
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 538 tgtatcaaatctagaaagagagtttgtaaatgatgaaccaattgtcgatccagttgataa 479


Query: 3864 tttcttggctcaaactaatcaaaatgtggttgttaatttagttgatgacaaccattcagc 3923
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 478 tttcttggctcaaactaatcaaaatgtggttgttaattctattgatgacaaccatacaac 419


Query: 3924 tttaatccgaaaaaatctttgtagacactacaacaccattgcactaagaaatcgtgaagc 3983
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttaatccaaaaaattcattgtagacactacaacaccattgcactaagaaatcgtgaagc 359


Query: 3984 tgctgaaactttattcgacaaccaatcgttaatcagacaatctatatacttttactatat 4043
|||||||||||||||| |||| ||||| ||||| |||||||| || |||||||||||| |
Sbjct: 358 tgctgaaactttattctacaatcaatcattaattagacaatcaatttacttttactatgt 299


Query: 4044 ttcaacagatatgctactaagaagtcttttggttttttattatgataataatgttccagg 4103
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 298 ttcaacagatatgctactaagaagtcttttggttttttattttgataataatattccaga 239


Query: 4104 ttctctttcaattactcgtatgagagatttattatccagaaactcaaccacaaccatacc 4163
|||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct: 238 ttctctttcaattactcgtatgagagatgtattatccagaaaatcaactacaaccatacc 179


Query: 4164 acacattccagatcgttt 4181
||||||||||||||||||
Sbjct: 178 acacattccagatcgttt 161

Score = 161 bits (81), Expect(4) = 0.0
Identities = 108/117 (92%)
Strand = Plus / Minus


Query: 3573 atttcaagagttaatcatctacagttaagcagaatcttgaatattacagttaaatcagga 3632
|||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct: 768 atttcaagagttaatcatctacagttgagtcaaatcttgaaaattacagttaaatcagga 709


Query: 3633 gacattagaaccacattcattttaaatgaacaaaatatcactaaatactcaaaaacc 3689
||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 708 gacattagaaccaaattcattttaaatggacaagatatcactaaaaactcaaaaacc 652

Score = 48.1 bits (24), Expect(4) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Minus


Query: 4253 tacttctcaactattaaacatttc 4276
||||||||||||||||||||||||
Sbjct: 88 tacttctcaactattaaacatttc 65

Score = 48.1 bits (24), Expect(4) = 0.0
Identities = 27/28 (96%)
Strand = Plus / Minus


Query: 4226 gtaatgatctagttgaatttcgttcaat 4253
||||||||||| ||||||||||||||||
Sbjct: 116 gtaatgatctaattgaatttcgttcaat 89

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 7,300,050,456
Number of extensions: 476022765
Number of successful extensions: 44886008
Number of sequences better than 10.0: 930
Length of query: 5146
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 5121
Effective length of database: 97,216,030,006
Effective search space: 497843289660726
Effective search space used: 497843289660726
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Contig-U10902-1Q.Seq.d
(5146 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q9NZJ4) RecName: Full=Sacsin; &AL157766_4(AL157766|pid:none) 134 3e-29
(Q9JLC8) RecName: Full=Sacsin; 130 4e-28
BC138482_1(BC138482|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 122 1e-25
BC171956_1(BC171956|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 122 1e-25
AB006708_10(AB006708|pid:none) Arabidopsis thaliana genomic DNA,... 117 6e-24
CR749427_1(CR749427|pid:none) Homo sapiens mRNA; cDNA DKFZp686B1... 112 1e-22
AL732351_6(AL732351|pid:none) Oryza sativa genomic DNA, chromoso... 111 2e-22
CP001577_292(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 107 4e-21
AL606457_18(AL606457|pid:none) Oryza sativa genomic DNA, chromos... 103 5e-20
BC142916_1(BC142916|pid:none) Danio rerio hypothetical LOC555303... 98 3e-18
AE017308_486(AE017308|pid:none) Mycoplasma mobile 163K complete ... 51 5e-04
AE017226_911(AE017226|pid:none) Treponema denticola ATCC 35405, ... 47 0.007
AM270330_30(AM270330|pid:none) Aspergillus niger contig An15c003... 45 0.036
CR382126_560(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 45 0.036
AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.048
AJ965256_94(AJ965256|pid:none) Dehalococcoides sp. CBDB1 complet... 44 0.062
CP000562_1468(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 44 0.081
CP001399_249(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 43 0.11
CP001401_219(CP001401|pid:none) Sulfolobus islandicus M.16.27, c... 43 0.14
AM910996_572(AM910996|pid:none) Plasmodium knowlesi strain H chr... 43 0.14
CP001402_236(CP001402|pid:none) Sulfolobus islandicus M.16.4, co... 43 0.14
AE017261_1415(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 42 0.18
CR380959_530(CR380959|pid:none) Candida glabrata strain CBS138 c... 42 0.18
AB037166_5(AB037166|pid:none) Clostridium botulinum genes for OR... 42 0.24
AM486554_1(AM486554|pid:none) Vitis vinifera contig VV78X050356.... 41 0.40
AF443617_2(AF443617|pid:none) Mycoplasma hominis thiamine biosyn... 41 0.40
CP000361_409(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 41 0.53
AE014187_243(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.69
AL844504_229(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.69
CP000077_853(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 40 0.69
BA000021_483(BA000021|pid:none) Wigglesworthia glossinidia endos... 40 0.90
CP000123_314(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 40 0.90
AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay... 40 1.2
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n... 40 1.2
CP000102_900(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 40 1.2
CP001357_1437(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 40 1.2
CP000770_88(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, ... 39 1.5
X87972_4(X87972|pid:none) C.botulinum progenitor toxin complex g... 39 1.5
AL132963_3(AL132963|pid:none) Arabidopsis thaliana DNA chromosom... 39 1.5
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt... 39 1.5
AM910996_492(AM910996|pid:none) Plasmodium knowlesi strain H chr... 39 1.5
AL844505_212(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 39 1.5
DQ158856_94(DQ158856|pid:none) Bigelowiella natans nucleomorph c... 39 1.5
CP001056_2911(CP001056|pid:none) Clostridium botulinum B str. Ek... 39 1.5
CR382400_46(CR382400|pid:none) Plasmodium falciparum chromosome ... 39 1.5
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 39 1.5
CP000559_973(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 39 2.0
AP008971_755(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 39 2.0
AL844509_132(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 39 2.0
AC117176_50(AC117176|pid:none) Dictyostelium discoideum chromoso... 39 2.0
(Q4AAC7) RecName: Full=Lysyl-tRNA synthetase; EC=6.1.1.... 39 2.6
AE017332_172(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co... 39 2.6
AL844506_218(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 39 2.6
AM432305_1(AM432305|pid:none) Vitis vinifera contig VV78X237792.... 39 2.6
CP000779_32(CP000779|pid:none) Leptospira biflexa serovar Patoc ... 38 3.4
CP000609_1734(CP000609|pid:none) Methanococcus maripaludis C5, c... 38 3.4
CP000851_2584(CP000851|pid:none) Shewanella pealeana ATCC 700345... 38 3.4
AE001362_103(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 38 3.4
AY394560_49(AY394560|pid:none) Campylobacter coli plasmid pCC31,... 38 3.4
AC153353_10(AC153353|pid:none) Medicago truncatula clone mth2-18... 38 4.4
FN357440_14(FN357440|pid:none) Schistosoma mansoni genome sequen... 38 4.4
CP001345_54(CP001345|pid:none) Cyanothece sp. PCC 7425 plasmid p... 38 4.4
FN357440_11(FN357440|pid:none) Schistosoma mansoni genome sequen... 38 4.4
A90083(A90083) hypothetical protein orf470 [imported] - Guillard... 38 4.4
FN357440_13(FN357440|pid:none) Schistosoma mansoni genome sequen... 38 4.4
AE000511_460(AE000511|pid:none) Helicobacter pylori 26695, compl... 37 5.8
BX842654_5(BX842654|pid:none) Bdellovibrio bacteriovorus complet... 37 5.8
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso... 37 5.8
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 37 5.8
AE014185_187(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 37 5.8
CP001202_54(CP001202|pid:none) Borrelia burgdorferi ZS7 plasmid ... 37 5.8
CU928174_42(CU928174|pid:none) Zygosaccharomyces rouxii strain C... 37 5.8
CP000395_842(CP000395|pid:none) Borrelia afzelii PKo, complete g... 37 7.6
AE014186_353(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 37 7.6
CR940352_290(CR940352|pid:none) Theileria annulata strain Ankara... 37 7.6
AL034557_40(AL034557|pid:none) Plasmodium falciparum MAL4P1. &A... 37 7.6
CP000361_1121(CP000361|pid:none) Arcobacter butzleri RM4018, com... 37 7.6
AL844508_46(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 37 7.6
AC153129_8(AC153129|pid:none) Medicago truncatula clone mth2-103... 37 7.6
DQ396875_5(DQ396875|pid:none) Scenedesmus obliquus strain UTEX 3... 37 9.9
CP000814_1074(CP000814|pid:none) Campylobacter jejuni subsp. jej... 37 9.9
(Q6BNL6) RecName: Full=Chromatin modification-related protein YN... 37 9.9
AL844509_243(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 9.9
CP000882_126(CP000882|pid:none) Hemiselmis andersenii chromosome... 37 9.9
EU016634_7(EU016634|pid:none) Uncultured Group I marine crenarch... 37 9.9
CP000361_1538(CP000361|pid:none) Arcobacter butzleri RM4018, com... 37 9.9
AJ131360_6(AJ131360|pid:none) Campylobacter jejuni (strain 81116... 37 9.9
AE015927_2092(AE015927|pid:none) Clostridium tetani E88, complet... 37 9.9
CP000140_2631(CP000140|pid:none) Parabacteroides distasonis ATCC... 37 9.9

>(Q9NZJ4) RecName: Full=Sacsin; &AL157766_4(AL157766|pid:none)
Length = 4579

Score = 134 bits (337), Expect = 3e-29
Identities = 131/507 (25%), Positives = 213/507 (42%), Gaps = 18/507 (3%)
Frame = +1

Query: 43 LPQEF-IDLGHSALHNKISENTASKLSITKLSQLIQSQVAFENSFGQKEELVDRLKQILR 219
+P+E + LG +K E AS + T L FGQKE+L R+K IL
Sbjct: 2488 IPREVAVKLGAVPKRHKALERYASNVCFTTLG----------TEFGQKEKLTSRIKSILN 2537

Query: 220 DYKVEV-FLNEMVQNAHDAGSTEVKLILDCNSLKQQFLKENPEISTLCKDLPSYFESSLL 396
Y E L E++QNA DA +TE+ + D +++P +L
Sbjct: 2538 AYPSEKEMLKELLQNADDAKATEICFVFDP--------RQHPVDRIFDDKWAPLQGPALC 2589

Query: 397 FYNNSVFTEKDIKNVQVMSASIKKQDENSIGQHGLGINSMYSFSDCPCILSG-EYLMIFD 573
YNN FTE D++ +Q + K+ + GQ+G+G NS+Y +DCP +SG + L IFD
Sbjct: 2590 VYNNQPFTEDDVRGIQNLGKGTKEGNPYKTGQYGIGFNSVYHITDCPSFISGNDILCIFD 2649

Query: 574 PFVTHIGQSINYSHGAKYKISQYKPYLKYFKPFQHLQSIFDFDLDDGKFNGTIIRLPLRK 753
P + + + S G ++ + F L F LD N T+ R PLR
Sbjct: 2650 PHARYAPGATSISPGRMFR-DLDADFRTQFSDVLDLYLGTHFKLD----NCTMFRFPLRN 2704

Query: 754 IQNDGNRHISPQKWNEANVLDYLKRVKASNLENLMFFTNIDSLEVSILPVGSKKL----- 918
+ IS ++ V + L ++++ E LMF +++ + + + + L
Sbjct: 2705 AEMAKVSEISSVPASDRMVQNLLDKLRSDGAELLMFLNHMEKISICEIDKSTGALNVLYS 2764

Query: 919 --------EQQXXXXXXXXXXXXTNQYNNLMNIPTQVSEYTFTIIPSEKSKITEKYIIGQ 1074
++ + L +IP Q YT SE +T I +
Sbjct: 2765 VKGKITDGDRLKRKQFHASVIDSVTKKRQLKDIPVQQITYTMDTEDSE-GNLTTWLICNR 2823

Query: 1075 VIEEDFKDLSEYPDNKALKFLSIYNNEKRK--PVGGVAFKLPDFSLPEYKFTPKSFCYLP 1248
+ +S+ +S + N+ P GGVA + YK ++FC+LP
Sbjct: 2824 SGFSSMEKVSK-------SVISAHKNQDITLFPRGGVAACITH----NYKKPHRAFCFLP 2872

Query: 1249 YKDLISNIPVHIHANFSTTSSRDILENAKSSNLYNIEEILSKKDNQVIQQSDSFQLCWNQ 1428
L + +P H++ +F+ S+R NL+ + DN V +SD WN
Sbjct: 2873 L-SLETGLPFHVNGHFALDSAR--------RNLW-------RDDNGVGVRSD-----WNN 2911

Query: 1429 LIVTEIIAPLYINTLTLFKNKYIKGND 1509
++T +IAP Y+ L K +Y G+D
Sbjct: 2912 SLMTALIAPAYVELLIQLKKRYFPGSD 2938

Score = 120 bits (301), Expect = 5e-25
Identities = 126/455 (27%), Positives = 201/455 (44%), Gaps = 25/455 (5%)
Frame = +1

Query: 172 FGQKEE-LVDRLKQILRDY-KVEVFLNEMVQNAHDAGSTEVKLILDCNSLKQQFLKENPE 345
FGQ LVD LK ILR Y + L E++QNA DAG+TEVK + D + Q+ E
Sbjct: 89 FGQTTPPLVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYD----ETQYGTE--- 141

Query: 346 ISTLCKDLPSYFESSLLFYNNSVFTEKDIKNVQVMSASIKKQDENSIGQHGLGINSMYSF 525
+ KD+ Y +L YNN+VFT +D +Q ++ S KK D +G+ G+G NS+Y
Sbjct: 142 -TLWSKDMAPYQGPALYVYNNAVFTPEDWHGIQEIARSRKKDDPLKVGRFGIGFNSVYHI 200

Query: 526 SDCPCILSGEYLMIFDPFVT-----HIGQSINYSHGAKYKISQYKPYLKYFKPFQHLQSI 690
+D PCI SG+ + + DP T GQ N +K +IS+ F PF +
Sbjct: 201 TDVPCIFSGDQIGMLDPHQTLFGPHESGQCWNLKDDSK-EISELS---DQFAPFVGIFGS 256

Query: 691 FDFDLDDGKFNGTIIRLPLRKIQNDGNRHISPQKWNEANVLDYLKRVKASNLENLMFFTN 870
+G F GT R PLR + +S +N+ VL+ + +A L+F +
Sbjct: 257 TKETFINGNFPGTFFRFPLRLQPS----QLSSNLYNKQKVLELFESFRADADTVLLFLKS 312

Query: 871 IDSLEVSILPV-GSKKLEQQXXXXXXXXXXXXTNQYNNLMNIPTQVSEYTFTIIPSEKSK 1047
+ + + + G++KL + + N++ + T +S Y + +
Sbjct: 313 VQDVSLYVREADGTEKLVFRVTSSESKALKH--ERPNSIKILGTAISNYCKKTPSNNITC 370

Query: 1048 ITEKYIIGQVIEE----DFKDLSEYPDNK------ALKFLSIYNNEKRKPVGGVAFKL-- 1191
+T Y + V+EE D + S N + K S+ + K P+ G+A L
Sbjct: 371 VT--YHVNIVLEEESTKDAQKTSWLVCNSVGGRGISSKLDSLADELKFVPIIGIAMPLSS 428

Query: 1192 --PDFSLPEYKFTPKSFCYLPY---KDLISNIPVHIHANFSTTSSRDILENAKSSNLYNI 1356
+ F+ K+FC+LP ++ + +PVHI F T +R
Sbjct: 429 RDDEAKGATSDFSGKAFCFLPLPPGEESSTGLPVHISGFFGLTDNR-------------- 474

Query: 1357 EEILSKKDNQVIQQSDSFQLCWNQLIVTEIIAPLY 1461
S K ++ Q D L WN+ +V ++ Y
Sbjct: 475 ---RSIKWRELDQWRDPAAL-WNEFLVMNVVPKAY 505

Score = 112 bits (280), Expect = 1e-22
Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 11/286 (3%)
Frame = +1

Query: 79 LHNKISENTASKLSITKLS-QLIQSQ-VAFENSFGQKEELVDRLKQILRDY-KVEVFLNE 249
+H I TA L + LS +LI + + FE S GQ+E L R+K IL +Y V E
Sbjct: 1422 VHEDIPMKTAEWLKVPCLSTRLINPENMGFEQS-GQREPLTVRIKNILEEYPSVSDIFKE 1480

Query: 250 MVQNAHDAGSTEVKLILDCNSLKQQFLKENPEISTLCKDLPSYFESSLLFYNNSVFTEKD 429
++QNA DA +TE ++D + ++EN L + + +L +NNS F++ D
Sbjct: 1481 LLQNADDANATECSFLIDMR--RNMDIREN----LLDPGMAACHGPALWSFNNSQFSDSD 1534

Query: 430 IKNVQVMSASIKKQDENSIGQHGLGINSMYSFSDCPCILSGEYLMIFDPFVTHIGQSINY 609
N+ + S+K+ + + +G+ GLG NS+Y +D P I+S E++++FDP + HI + I
Sbjct: 1535 FVNITRLGESLKRGEVDKVGKFGLGFNSVYHITDIPIIMSREFMIMFDPNINHISKHIKD 1594

Query: 610 SHGAKYKIS---QYKPYLKYFKPFQHLQSIFDFDLD-----DGKFNGTIIRLPLRKIQND 765
KI+ Q K K+ F+ +F L +NGT+ RL R Q
Sbjct: 1595 KSNPGIKINWSKQQKRLRKFPNQFKPFIDVFGCQLPLTVEAPYSYNGTLFRLSFRTQQEA 1654

Query: 766 GNRHISPQKWNEANVLDYLKRVKASNLENLMFFTNIDSLEVSILPV 903
+S +N A++ + ++F ++ S+ + L +
Sbjct: 1655 KVSEVSSTCYNTADIYSLVDEFSLCGHRLIIFTQSVKSMYLKYLKI 1700

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 7,448,433,856
Number of extensions: 143745100
Number of successful extensions: 372191
Number of sequences better than 10.0: 89
Number of HSP's gapped: 371877
Number of HSP's successfully gapped: 101
Length of query: 1715
Length of database: 1,040,966,779
Length adjustment: 143
Effective length of query: 1572
Effective length of database: 582,754,024
Effective search space: 916089325728
Effective search space used: 916089325728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.68 gvh: 0.34 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U10902-1 is cyt

VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 2
AH (FL, L) 23
AF (FL, S) 3
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 3
SF (FL, S) 0
CH (FL, L) 4
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0