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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10881-1
Contig ID Contig-U10881-1
Contig update 2002.12.18
Contig sequence 
>Contig-U10881-1 (Contig-U10881-1Q) /CSM_Contig/Contig-U10881-1Q.Seq.d
TCTGATGTACCAGTACTTGATTACACAAGTTCAATCAAATCAACTGAATC
ATCATTGACTATCTATGGTCATAAATTTGGTATCGATAGAAGTAAAGTTA
CATTACAAGTTGATTATCAGAATGGTCAAGGTTGGAAGAATACAACAATC
TCATTCTTTTCTGGTATTATTTTAATGACTGATAATATTACACCAACATC
AACACCATTCTATGTTCGTGTAATCGTAGACGGTAAAATTTCAAATCAAC
TTTTAGTAGTTCCAATCGTTGTTGGTGATAGTCCATGTAGTTATGAAGTT
ATTCAATCAATAGTTGCTACTTGGATCGATAGTGAAAAATATCCATATCT
TCAAGCATCTATCACTATTAAAAATACAGGTACAAGACCAATTAAAGCAT
TTAGTTTCATTATTGAAAAAATTGCTTATGGTCAAATTTGGGGTGTTGAT
GCAAATGGTAATAATAGATACACTTTACCATCATATAATTTAATCATTAA
TCCTCGTGATCAGTATAGTTTTGGTTATATCATTCAAGGTACAACTGTTG
CTGATCTCAAACAAGTCACTTATACTTGTCTTTAAAAATTTCAATTTAGT
TTTGGAATAATAAAAAAAAAAAACCCTTTGGAGTGTAAAAATAAAAATAA
AACATTCAAAT----------CTAAATGATTGAGATCTACAAGTGTTTGC
TTTAATTGGAATTCTTAATTGATATGTAGAACTGAAAATATCACCAGATA
CAGCATTGGCTGGAGTAATCTTAATTCTATATGGTTCTAAATCGAAATCA
CTTGTGATATTAAATTCACCACTTGCTAAACCATTTGGAGAATCTTCAAT
TCTAATATTCCAACCGACAACAGTATCTTGAGTGACATTAACAGCATTTG
ATGGATATGAAGAGAATTCAGTAATGATAGGTGGCATTTGATCAGCAAAA
CCTGAGTTAACTCTTAATTGAGCTTTACTACCAACTGAGATAGCAAAATA
GTAAGAGTCATAAACGAATGGTGGAATGAGAACAGCATATGTATATTCAC
CAGTGAAAATTCTTGCTGGAATTTGGAAATCCATACAAAACATACCTTTG
ACTTCATCCCATGAGCCTGGTGTGGCGTTATCTAATGATGCCTTTTCTGG
ATTTAATGCTAAAGGAAGTTGTAAGAAACGTGGAGTCATTGTTTTATTAG
AACCTGCAAAGTTCATACAATAAAGTATTATTGAATGGACCATTTGAAAC
ATCAACATCATTGTACTTAAATTCAAAACCAGTGAAAGTGTATGGGTCTA
AATT
Gap gap included
Contig length 1294
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4142412
End point 4140936
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 7
Link to clone list U10881
List of clone(s) 

est1=VHG314Z,0,472
est2=VHK829Z,1,594
est3=VHQ313Z,1,561
est4=VFG685F,26,593
est5=AFG290F,41,661
est6=AFG290Z,662,1474
est7=VFG685Z,881,1475
Translated Amino Acid sequence 
sdvpvldytssikstessltiyghkfgidrskvtlqvdyqngqgwknttisffsgiilmt
dnitptstpfyvrvivdgkisnqllvvpivvgdspcsyeviqsivatwidsekypylqas
itikntgtrpikafsfiiekiaygqiwgvdangnnrytlpsynliinprdqysfgyiiqg
ttvadlkqvtytcl*KFQFSFGIIKKKNPLECKNKNKTFK---

---LND*dlqvfaligiln*yvelkispdtalagvililygskskslvilnsplakpfge
ssilifqpttvs*vtltafdgyeensvmiggi*sakpeltln*allpteiak**es*tng
gmrtayvyspvkilagiwksiqnipltsshepgvalsndafsgfnakgsckkrgvivlle
pakfiq*siiewti*niniivlkfktsesvwv*i
Translated Amino Acid sequence (All Frames) 
Frame A:
sdvpvldytssikstessltiyghkfgidrskvtlqvdyqngqgwknttisffsgiilmt
dnitptstpfyvrvivdgkisnqllvvpivvgdspcsyeviqsivatwidsekypylqas
itikntgtrpikafsfiiekiaygqiwgvdangnnrytlpsynliinprdqysfgyiiqg
ttvadlkqvtytcl*KFQFSFGIIKKKNPLECKNKNKTFK---

---LND*dlqvfaligiln*yvelkispdtalagvililygskskslvilnsplakpfge
ssilifqpttvs*vtltafdgyeensvmiggi*sakpeltln*allpteiak**es*tng
gmrtayvyspvkilagiwksiqnipltsshepgvalsndafsgfnakgsckkrgvivlle
pakfiq*siiewti*niniivlkfktsesvwv*i

Frame B:
lmyqylitqvqsnqlnhh*lsmvinlvsievklhykliirmvkvgriqqshsflvlf**l
iilhqhqhhsmfv*s*tvkfqinf**fqsllvivhvvmklfnq*lllgsivknihifkhl
sllkiqvqdqlkhlvsllkkllmvkfgvlmqmviidtlyhhii*slilvisivlvisfkv
qlllisnkslilvfknfnlvle**kkktlwsvkikikhsn---

---*mieiykcll*leflidm*n*kyhqiqhwle*s*fymvlnrnhl*y*ihhllnhlen
lqf*ysnrqqyle*h*qhlmdmkriq***vafdqqnls*llielyyqlr*qnskshkrmv
e*eqhmyihq*kfllefgnpyktyl*lhpmslvwrylmmpfldlmlkevvrnveslfy*n
lqssynkvllngpfetstslylnskpvkvygsk

Frame C:
*ctst*lhkfnqin*iiidylws*iwyr*k*syits*lsewsrleeynnlilfwyyfnd*
*yytnintilcscnrrr*nfkstfsssnrcw**sm*l*sysinscyldr**kisisssiy
hy*kyryktn*si*fhy*knclwsnlgc*ckw***ihftii*fnh*ss*sv*fwlyhsry
ncc*sqtshlylslkisi*fwnnkkkkpfgv*k*k*niq---

---k*lrstsvcfnwns*licrtenitrysigwsnlnsiwf*ieitcdikfttc*tiwri
fnsniptdnsilsdinsi*wi*refsndrwhliskt*vns*lsfttn*dskivrvineww
nensiciftsenscwnleihtkhtfdfip*awcgvi**clfwi*c*rkl*etwshcfirt
ckvhtikyy*mdhlkhqhhct*iqnq*kcmgln
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10881-1 (Contig-U10881-1Q)
/CSM_Contig/Contig-U10881-1Q.Seq.d
         (1304 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10881-1 (Contig-U10881-1Q) /CSM_Contig/Conti...  1255  0.0
Contig-U14787-1 (Contig-U14787-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U10639-1 (Contig-U10639-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U12530-1 (Contig-U12530-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U11788-1 (Contig-U11788-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U11670-1 (Contig-U11670-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U11517-1 (Contig-U11517-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U11475-1 (Contig-U11475-1Q) /CSM_Contig/Conti...    36  0.092

>Contig-U10881-1 (Contig-U10881-1Q) /CSM_Contig/Contig-U10881-1Q.Seq.d
          Length = 1304

 Score = 1255 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                        
Query: 672  ctaaatgattgagatctacaagtgtttgctttaattggaattcttaattgatatgtagaa 731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  ctaaatgattgagatctacaagtgtttgctttaattggaattcttaattgatatgtagaa 731

                                                                        
Query: 732  ctgaaaatatcaccagatacagcattggctggagtaatcttaattctatatggttctaaa 791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  ctgaaaatatcaccagatacagcattggctggagtaatcttaattctatatggttctaaa 791

                                                                        
Query: 792  tcgaaatcacttgtgatattaaattcaccacttgctaaaccatttggagaatcttcaatt 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  tcgaaatcacttgtgatattaaattcaccacttgctaaaccatttggagaatcttcaatt 851

                                                                        
Query: 852  ctaatattccaaccgacaacagtatcttgagtgacattaacagcatttgatggatatgaa 911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  ctaatattccaaccgacaacagtatcttgagtgacattaacagcatttgatggatatgaa 911

                                                                        
Query: 912  gagaattcagtaatgataggtggcatttgatcagcaaaacctgagttaactcttaattga 971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  gagaattcagtaatgataggtggcatttgatcagcaaaacctgagttaactcttaattga 971

                                                                        
Query: 972  gctttactaccaactgagatagcaaaatagtaagagtcataaacgaatggtggaatgaga 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  gctttactaccaactgagatagcaaaatagtaagagtcataaacgaatggtggaatgaga 1031

                                                                        
Query: 1032 acagcatatgtatattcaccagtgaaaattcttgctggaatttggaaatccatacaaaac 1091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 acagcatatgtatattcaccagtgaaaattcttgctggaatttggaaatccatacaaaac 1091

                                                                        
Query: 1092 atacctttgacttcatcccatgagcctggtgtggcgttatctaatgatgccttttctgga 1151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 atacctttgacttcatcccatgagcctggtgtggcgttatctaatgatgccttttctgga 1151

                                                                        
Query: 1152 tttaatgctaaaggaagttgtaagaaacgtggagtcattgttttattagaacctgcaaag 1211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 tttaatgctaaaggaagttgtaagaaacgtggagtcattgttttattagaacctgcaaag 1211

                                                                        
Query: 1212 ttcatacaataaagtattattgaatggaccatttgaaacatcaacatcattgtacttaaa 1271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ttcatacaataaagtattattgaatggaccatttgaaacatcaacatcattgtacttaaa 1271

                                             
Query: 1272 ttcaaaaccagtgaaagtgtatgggtctaaatt 1304
            |||||||||||||||||||||||||||||||||
Sbjct: 1272 ttcaaaaccagtgaaagtgtatgggtctaaatt 1304


 Score = 1211 bits (611), Expect = 0.0
 Identities = 611/611 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgtaccagtacttgattacacaagttcaatcaaatcaactgaatcatcattgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tctgatgtaccagtacttgattacacaagttcaatcaaatcaactgaatcatcattgact 60

                                                                       
Query: 61  atctatggtcataaatttggtatcgatagaagtaaagttacattacaagttgattatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atctatggtcataaatttggtatcgatagaagtaaagttacattacaagttgattatcag 120

                                                                       
Query: 121 aatggtcaaggttggaagaatacaacaatctcattcttttctggtattattttaatgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatggtcaaggttggaagaatacaacaatctcattcttttctggtattattttaatgact 180

                                                                       
Query: 181 gataatattacaccaacatcaacaccattctatgttcgtgtaatcgtagacggtaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gataatattacaccaacatcaacaccattctatgttcgtgtaatcgtagacggtaaaatt 240

                                                                       
Query: 241 tcaaatcaacttttagtagttccaatcgttgttggtgatagtccatgtagttatgaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaaatcaacttttagtagttccaatcgttgttggtgatagtccatgtagttatgaagtt 300

                                                                       
Query: 301 attcaatcaatagttgctacttggatcgatagtgaaaaatatccatatcttcaagcatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attcaatcaatagttgctacttggatcgatagtgaaaaatatccatatcttcaagcatct 360

                                                                       
Query: 361 atcactattaaaaatacaggtacaagaccaattaaagcatttagtttcattattgaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atcactattaaaaatacaggtacaagaccaattaaagcatttagtttcattattgaaaaa 420

                                                                       
Query: 421 attgcttatggtcaaatttggggtgttgatgcaaatggtaataatagatacactttacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attgcttatggtcaaatttggggtgttgatgcaaatggtaataatagatacactttacca 480

                                                                       
Query: 481 tcatataatttaatcattaatcctcgtgatcagtatagttttggttatatcattcaaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcatataatttaatcattaatcctcgtgatcagtatagttttggttatatcattcaaggt 540

                                                                       
Query: 541 acaactgttgctgatctcaaacaagtcacttatacttgtctttaaaaatttcaatttagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acaactgttgctgatctcaaacaagtcacttatacttgtctttaaaaatttcaatttagt 600

                      
Query: 601 tttggaataat 611
           |||||||||||
Sbjct: 601 tttggaataat 611


>Contig-U14787-1 (Contig-U14787-1Q) /CSM_Contig/Contig-U14787-1Q.Seq.d
          Length = 614

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  aaatcaactgaatcatcat 55
           |||||||||||||||||||
Sbjct: 349 aaatcaactgaatcatcat 367


>Contig-U10639-1 (Contig-U10639-1Q) /CSM_Contig/Contig-U10639-1Q.Seq.d
          Length = 631

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 336 aaaatatccatatcttcaa 354
           |||||||||||||||||||
Sbjct: 199 aaaatatccatatcttcaa 181


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,260
Number of Sequences: 6905
Number of extensions: 14260
Number of successful extensions: 1469
Number of sequences better than 10.0: 148
length of query: 1304
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1288
effective length of database: 5,564,391
effective search space: 7166935608
effective search space used: 7166935608
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U10881-1 (Contig-U10881-1Q) /CSM_Contig/Contig-U10881-1Q.Seq.d
         (1304 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ325307) Dictyostelium discoideum cDNA clone:dda13c24, 5' ...  1211   0.0    1
(BJ342389) Dictyostelium discoideum cDNA clone:dda13c24, 3' ...  1086   0.0    2
(BJ431618) Dictyostelium discoideum cDNA clone:ddv14i22, 3' ...  1082   0.0    1
(BJ413258) Dictyostelium discoideum cDNA clone:ddv14i22, 5' ...  1078   0.0    1
(BJ446565) Dictyostelium discoideum cDNA clone:ddv63j03, 3' ...   567   0.0    2
(BJ443252) Dictyostelium discoideum cDNA clone:ddv52j08, 3' ...   714   0.0    1
(BJ440263) Dictyostelium discoideum cDNA clone:ddv43l03, 3' ...   523   e-144  1
(AC222999) Bos taurus clone CH240-432H24, WORKING DRAFT SEQU...    48   0.84   1
(AC182320) Bos taurus clone CH240-386M11, WORKING DRAFT SEQU...    48   0.84   1
(CP000724) Alkaliphilus metalliredigens QYMF, complete genome.     48   0.84   1
(AL137228) Human chromosome 14 DNA sequence BAC R-369N15 of ...    46   3.3    1
(AC232177) Lama pacos clone CH246-334B22, WORKING DRAFT SEQU...    46   3.3    1
(ET240037) S0051A14_SP6 CHORI-214 Salmo salar genomic clone ...    46   3.3    1
(DX509444) 764_2_14171949_16654_43768_043 Arachis batizocoi ...    46   3.3    1
(DU844083) 28635 Tomato HindIII BAC Library Solanum lycopers...    46   3.3    1
(DU087007) 39753 Tomato HindIII BAC Library Solanum lycopers...    46   3.3    1
(EG795363) EST_ssal_evd_15147 ssalevd thymus Salmo salar cDN...    46   3.3    1
(EG795362) EST_ssal_evd_15146 ssalevd thymus Salmo salar cDN...    46   3.3    1
(CP000469) Shewanella sp. ANA-3, complete genome.                  46   3.3    1
(EJ036317) 1095454069872 Global-Ocean-Sampling_GS-26-01-01-1...    42   4.1    2
(AC214588) Bos taurus clone CH240-131O21, WORKING DRAFT SEQU...    38   9.8    5

>(BJ325307) Dictyostelium discoideum cDNA clone:dda13c24, 5' end,
           single read.
          Length = 621

 Score = 1211 bits (611), Expect = 0.0
 Identities = 611/611 (100%)
 Strand = Plus / Minus


Query: 1   tctgatgtaccagtacttgattacacaagttcaatcaaatcaactgaatcatcattgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgatgtaccagtacttgattacacaagttcaatcaaatcaactgaatcatcattgact 561


Query: 61  atctatggtcataaatttggtatcgatagaagtaaagttacattacaagttgattatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atctatggtcataaatttggtatcgatagaagtaaagttacattacaagttgattatcag 501


Query: 121 aatggtcaaggttggaagaatacaacaatctcattcttttctggtattattttaatgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatggtcaaggttggaagaatacaacaatctcattcttttctggtattattttaatgact 441


Query: 181 gataatattacaccaacatcaacaccattctatgttcgtgtaatcgtagacggtaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gataatattacaccaacatcaacaccattctatgttcgtgtaatcgtagacggtaaaatt 381


Query: 241 tcaaatcaacttttagtagttccaatcgttgttggtgatagtccatgtagttatgaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaaatcaacttttagtagttccaatcgttgttggtgatagtccatgtagttatgaagtt 321


Query: 301 attcaatcaatagttgctacttggatcgatagtgaaaaatatccatatcttcaagcatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attcaatcaatagttgctacttggatcgatagtgaaaaatatccatatcttcaagcatct 261


Query: 361 atcactattaaaaatacaggtacaagaccaattaaagcatttagtttcattattgaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atcactattaaaaatacaggtacaagaccaattaaagcatttagtttcattattgaaaaa 201


Query: 421 attgcttatggtcaaatttggggtgttgatgcaaatggtaataatagatacactttacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attgcttatggtcaaatttggggtgttgatgcaaatggtaataatagatacactttacca 141


Query: 481 tcatataatttaatcattaatcctcgtgatcagtatagttttggttatatcattcaaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tcatataatttaatcattaatcctcgtgatcagtatagttttggttatatcattcaaggt 81


Query: 541 acaactgttgctgatctcaaacaagtcacttatacttgtctttaaaaatttcaatttagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  acaactgttgctgatctcaaacaagtcacttatacttgtctttaaaaatttcaatttagt 21


Query: 601 tttggaataat 611
           |||||||||||
Sbjct: 20  tttggaataat 10

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,405,083,087
Number of extensions: 79750488
Number of successful extensions: 6247449
Number of sequences better than 10.0: 21
Length of query: 1304
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1280
Effective length of database: 97,308,875,965
Effective search space: 124555361235200
Effective search space used: 124555361235200
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10881-1 (Contig-U10881-1Q) /CSM_Contig/Contig-U10881-1Q.Seq.d
         (1304 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    81   9e-14
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    77   1e-12
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    65   4e-09
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...    58   1e-08
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    64   2e-08
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    62   6e-08
AF001315_1(AF001315|pid:none) Dictyostelium discoideum MipAp (mi...    54   2e-07
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    53   3e-05
BT000696_1(BT000696|pid:none) Arabidopsis thaliana clone RAFL07-...    50   2e-04
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...    49   3e-04
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    49   5e-04
AC116960_12(AC116960|pid:none) Dictyostelium discoideum chromoso...    40   0.18
DQ357228_1(DQ357228|pid:none) Glycine max clone pSC8c endo-1,4-b...    40   0.18
AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    38   0.70
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...    38   0.91
AB091487_1(AB091487|pid:none) Apis dorsata mitochondrial CO2 gen...    37   1.6
AB091488_1(AB091488|pid:none) Apis dorsata mitochondrial CO2 gen...    37   2.0
AJ248285_143(AJ248285|pid:none) Pyrococcus abyssi complete genom...    35   4.5
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    35   5.9
AY587547_1(AY587547|pid:none) Apis laboriosa cytochrome oxidase ...    35   7.7
(P50267) RecName: Full=Cytochrome c oxidase subunit 2;          ...    35   7.7

>(P22698) RecName: Full=Spore germination protein 270-11;
           &B35621(B35621) &M33862_1(M33862|pid:none)
          Length = 532

 Score = 80.9 bits (198), Expect = 9e-14
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
 Frame = +1

Query: 178 TDNITPTSTPFYVRVIVDGKISN-QLLVVPIVVGDSPCSYEVIQSIVATWIDSEKYPYLQ 354
           T+  TPT TP        G  S  Q  + P     + C  +V Q ++ +WI+ E   Y+Q
Sbjct: 401 TETDTPTPTPSSSSSEGSGSSSETQPPITPPPTTGTSCLAQVQQKVINSWINGEVDHYIQ 460

Query: 355 ASITIKNTGTRPIKAFSFIIEKIAYGQIWGVDANGNNRYTLPSYNLIINPRDQYSFGYII 534
              TI N G+ PI +F+F  +     QIW V+  G N Y LPS+   I     ++FGYI+
Sbjct: 461 VEATIVNQGSTPISSFNFYSDA---EQIWSVEKTGTNTYKLPSWFSTIPVGGSHTFGYIV 517

Query: 535 QGTTVADLKQVTYTC 579
           +   ++DL+ V YTC
Sbjct: 518 KSAELSDLEGVQYTC 532

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,095,519,490
Number of extensions: 41779745
Number of successful extensions: 93708
Number of sequences better than 10.0: 21
Number of HSP's gapped: 93630
Number of HSP's successfully gapped: 25
Length of query: 434
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 303
Effective length of database: 621,205,444
Effective search space: 188225249532
Effective search space used: 188225249532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.44  gvh: 0.14  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U10881-1 is nuc
VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0