Contig-U10879-1 |
Contig ID |
Contig-U10879-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2500 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
1391626 |
End point |
1393505 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
24 |
Number of EST |
44 |
Link to clone list |
U10879 |
List of clone(s) |
est1=AFJ688F,1,620 est2=CHC232F,51,650 est3=CHC341F,58,562 est4=AFG183F,66,642 est5=CFJ352F,651,1224 est6=CFJ453F,651,1229 est7=CFK163F,651,895 est8=CHG652F,651,1228 est9=CHH356F,651,1182 est10=CHI811F,651,1140 est11=SFK135F,651,1231 est12=CFI860F,663,1100 est13=CHD519F,685,809 est14=CFG310F,705,1296 est15=CFI258F,782,1400 est16=CFH522F,809,1469 est17=CFF852F,867,1454 est18=CFC151F,998,1493 est19=CFD606F,1165,1718 est20=CFE386F,1167,1733 est21=SLA128E,1218,2492 est22=SFJ780F,1492,1813 est23=CFJ453Z,1679,2487 est24=AFJ688Z,1740,2432 est25=CHI811Z,1745,2487 est26=CFI258Z,1759,2442 est27=CFG310Z,1794,2437 est28=CHC341Z,1794,2485 est29=CFH522Z,1798,2438 est30=CHG652Z,1804,2331 est31=AFG183Z,1807,2476 est32=CHH356Z,1808,2486 est33=CFF852Z,1814,2485 est34=CFJ352Z,1815,2486 est35=CHC441Z,1860,2181 est36=CFI860Z,1861,2434 est37=CFK163Z,1874,2432 est38=CFD606Z,1918,2433 est39=CHC232Z,1996,2439 est40=SHC188F,2095,2499 est41=SHC188Z,2095,2481 est42=CFE386Z,2122,2427 est43=SFJ780Z,2133,2414 est44=CFC151Z,2276,2377
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.22 |
Homology vs DNA |
Query= Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Contig-U10879-1Q.Seq.d (2510 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU060076) Dictyostelium discoideum slug cDNA, clone SLA128. 1070 0.0 2 (BJ359052) Dictyostelium discoideum cDNA clone:ddc12h14, 5' ... 1059 0.0 2 (BJ361517) Dictyostelium discoideum cDNA clone:ddc17c16, 5' ... 852 0.0 2 (BJ375687) Dictyostelium discoideum cDNA clone:ddc19j14, 3' ... 791 0.0 4 (BJ361198) Dictyostelium discoideum cDNA clone:ddc16k05, 5' ... 749 0.0 3 (BJ361112) Dictyostelium discoideum cDNA clone:ddc9l21, 5' e... 662 0.0 2 (BJ360822) Dictyostelium discoideum cDNA clone:ddc8k02, 5' e... 632 0.0 2 (BJ380713) Dictyostelium discoideum cDNA clone:ddc39f04, 3' ... 607 0.0 4 (BJ359144) Dictyostelium discoideum cDNA clone:ddc13d03, 5' ... 852 0.0 2 (BJ344914) Dictyostelium discoideum cDNA clone:dda20o22, 3' ... 676 0.0 3 (BJ363400) Dictyostelium discoideum cDNA clone:ddc26o08, 5' ... 837 0.0 4 (BJ375120) Dictyostelium discoideum cDNA clone:ddc17c16, 3' ... 638 0.0 3 (BJ325314) Dictyostelium discoideum cDNA clone:dda13e21, 5' ... 837 0.0 4 (BJ360320) Dictyostelium discoideum cDNA clone:ddc5e13, 5' e... 589 0.0 3 (BJ327578) Dictyostelium discoideum cDNA clone:dda20o22, 5' ... 795 0.0 4 (BJ377874) Dictyostelium discoideum cDNA clone:ddc26b11, 3' ... 565 0.0 4 (BJ380009) Dictyostelium discoideum cDNA clone:ddc36p13, 3' ... 543 0.0 4 (BJ342394) Dictyostelium discoideum cDNA clone:dda13e21, 3' ... 543 0.0 5 (BJ375679) Dictyostelium discoideum cDNA clone:ddc19h13, 3' ... 529 0.0 4 (BJ374754) Dictyostelium discoideum cDNA clone:ddc16k05, 3' ... 563 0.0 3 (BJ372430) Dictyostelium discoideum cDNA clone:ddc12h14, 3' ... 523 0.0 4 (BJ372533) Dictyostelium discoideum cDNA clone:ddc13d03, 3' ... 571 0.0 4 (BJ390139) Dictyostelium discoideum cDNA clone:dds21e09, 5' ... 852 0.0 1 (BJ363363) Dictyostelium discoideum cDNA clone:ddc26b11, 5' ... 767 0.0 2 (BJ361985) Dictyostelium discoideum cDNA clone:ddc19j14, 5' ... 844 0.0 1 (BJ361978) Dictyostelium discoideum cDNA clone:ddc19h13, 5' ... 842 0.0 1 (BJ365494) Dictyostelium discoideum cDNA clone:ddc35g14, 5' ... 809 0.0 1 (BJ379659) Dictyostelium discoideum cDNA clone:ddc35g14, 3' ... 537 0.0 2 (C25518) Dictyostelium discoideum slug cDNA, clone SLA128. 329 0.0 4 (BJ375405) Dictyostelium discoideum cDNA clone:ddc18h16, 3' ... 438 0.0 3 (BJ365820) Dictyostelium discoideum cDNA clone:ddc36p13, 5' ... 724 0.0 1 (BJ376223) Dictyostelium discoideum cDNA clone:ddc21m15, 3' ... 319 e-180 5 (BJ374491) Dictyostelium discoideum cDNA clone:ddc8k02, 3' e... 313 e-171 3 (BJ361748) Dictyostelium discoideum cDNA clone:ddc18h16, 5' ... 613 e-170 1 (BJ366463) Dictyostelium discoideum cDNA clone:ddc39f04, 5' ... 609 e-169 1 (BJ390036) Dictyostelium discoideum cDNA clone:dds20p19, 5' ... 513 e-162 3 (BJ377925) Dictyostelium discoideum cDNA clone:ddc26o08, 3' ... 313 e-124 3 (BJ392789) Dictyostelium discoideum cDNA clone:dds28o21, 5' ... 305 e-120 2 (BJ377875) Dictyostelium discoideum cDNA clone:ddc26b12, 3' ... 434 e-117 1 (BJ404570) Dictyostelium discoideum cDNA clone:dds28o21, 3' ... 305 e-115 2 (BJ374695) Dictyostelium discoideum cDNA clone:ddc9l21, 3' e... 262 4e-76 3 (BJ402247) Dictyostelium discoideum cDNA clone:dds20p19, 3' ... 252 6e-62 1 (BJ362414) Dictyostelium discoideum cDNA clone:ddc21m15, 5' ... 174 1e-38 1 (BJ373947) Dictyostelium discoideum cDNA clone:ddc5e13, 3' e... 131 1e-25 1 (DW261390) UI-S-GG1-abe-d-07-0-UI.s1 UI-S-GG1 Euprymna scolo... 54 0.027 1 (E27529) Novel collagen-like protein. 38 0.21 2 (CU424490) Medicago truncatula chromosome 5 clone mth2-95h16... 50 0.41 1 (AC134946) Rattus norvegicus clone CH230-276M20, *** SEQUENC... 50 0.41 1 (AC102971) Rattus norvegicus clone CH230-44K16, *** SEQUENCI... 50 0.41 1 (DH820662) Rattus norvegicus DNA, BAC clone: RNB1-424G05, 3'... 50 0.41 1 (DH802722) Rattus norvegicus DNA, BAC clone: RNB1-398N09, 3'... 50 0.41 1 (DH755193) Rattus norvegicus DNA, BAC clone: RNB1-334K15, 5'... 50 0.41 1 (CT596728) Danio rerio EST, clone ZF_mu_85p07 3'. 46 3.2 2 (CV983897) UMC-bof_0B02-002-e05 Ovarian Follicle bof Bos tau... 40 3.7 3 (AC142013) Rattus norvegicus clone CH230-290L23, *** SEQUENC... 40 3.9 3 (AM032243) Bos sp. 3' EST, clone C0007408g01. 40 4.2 3 (BX510342) Zebrafish DNA sequence from clone DKEY-15I15 in l... 46 6.5 1 (AL645467) Mouse DNA sequence from clone RP23-131H22 on chro... 46 6.5 1 (AM910996) Plasmodium knowlesi strain H chromosome 14, compl... 46 6.5 1 (AC150156) Gallus gallus clone WAG-8K5, WORKING DRAFT SEQUENCE. 46 6.5 1 (AC150077) Gallus gallus clone TAM31-15J4, WORKING DRAFT SEQ... 46 6.5 1 (AC150036) Gallus gallus clone CH261-10E15, WORKING DRAFT SE... 46 6.5 1 (AC025874) Mus musculus clone RP23-58C21, WORKING DRAFT SEQU... 46 6.5 1 (FH646855) CHO_OF4987xf12f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 6.5 1 (FH493948) CHO_OF4610xb05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 6.5 1 (FH318970) CHO_OF4493xl14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 6.5 1 (EJ887610) 1093018425825 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.5 1 (EE397620) RM_L_05143 rare minnow liver cDNA Library Gobiocy... 46 6.5 1 (DT138771) JGI_ANNO17797.fwd ANNO Pimephales promelas Whole ... 46 6.5 1 (DT130253) JGI_ANNO12750.fwd ANNO Pimephales promelas Whole ... 46 6.5 1
>(AU060076) Dictyostelium discoideum slug cDNA, clone SLA128. Length = 721
Score = 1070 bits (540), Expect(2) = 0.0 Identities = 540/540 (100%) Strand = Plus / Plus
Query: 1410 ccgttgtggtgtcatcacaatatgggggcagtgttacaatgactatgaattccctctcta 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 ccgttgtggtgtcatcacaatatgggggcagtgttacaatgactatgaattccctctcta 241
Query: 1470 tggatatcttgaaattcagtggtaatttcgttgcaccaaaatcaagtataattaaaaatg 1529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tggatatcttgaaattcagtggtaatttcgttgcaccaaaatcaagtataattaaaaatg 301
Query: 1530 caccagcctcatgctcattatccgctagtcctttggcaatctaccaaaatgggttgactg 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 caccagcctcatgctcattatccgctagtcctttggcaatctaccaaaatgggttgactg 361
Query: 1590 aaggttggaattattggtcatcacgttcatattctcaaattaatacaaccgattcttcat 1649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 aaggttggaattattggtcatcacgttcatattctcaaattaatacaaccgattcttcat 421
Query: 1650 cacatagtgttggttcaactaaatctttatcattggttttaatgggttcatcatctgcat 1709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 cacatagtgttggttcaactaaatctttatcattggttttaatgggttcatcatctgcat 481
Query: 1710 tgacattggctcgttctggtgattttgaaaccacctatttcactggcattaaattcaata 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 tgacattggctcgttctggtgattttgaaaccacctatttcactggcattaaattcaata 541
Query: 1770 tgaaagcaaatacaaccatgagtggtcttcgtgtttatttcccaaatgaacaaaataaat 1829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 tgaaagcaaatacaaccatgagtggtcttcgtgtttatttcccaaatgaacaaaataaat 601
Query: 1830 attggactccatcatcaccaattacaacctcatgggccacttatacagttccattcacat 1889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 602 attggactccatcatcaccaattacaacctcatgggccacttatacagttccattcacat 661
Query: 1890 ctctccaacataaaacaattgaatctgcattcacttttgccaatactgaaaatattaatg 1949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 662 ctctccaacataaaacaattgaatctgcattcacttttgccaatactgaaaatattaatg 721
Score = 363 bits (183), Expect(2) = 0.0 Identities = 183/183 (100%) Strand = Plus / Plus
Query: 1228 gcacaggtttcagaagactcttcaaaatactatgtgaaactattgattttcaataatgaa 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcacaggtttcagaagactcttcaaaatactatgtgaaactattgattttcaataatgaa 60
Query: 1288 gtaggcattcaatcagtcactatcaaaggcaaagatatgagcgcccctgtcacaatggtc 1347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtaggcattcaatcagtcactatcaaaggcaaagatatgagcgcccctgtcacaatggtc 120
Query: 1348 cgtcaaggaagtgcccaattcgtttggagtcaagctggtaaagaaatgatgttccctgca 1407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cgtcaaggaagtgcccaattcgtttggagtcaagctggtaaagaaatgatgttccctgca 180
Query: 1408 acc 1410 ||| Sbjct: 181 acc 183
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,261,691,709 Number of extensions: 131712277 Number of successful extensions: 9809315 Number of sequences better than 10.0: 71 Length of query: 2510 Length of database: 95,242,211,685 Length adjustment: 25 Effective length of query: 2485 Effective length of database: 97,216,030,006 Effective search space: 241581834564910 Effective search space used: 241581834564910 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 6.28 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
2 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
2 |
CH (FL, L) |
7 |
CF (FL, S) |
11 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |