Contig-U10879-1
Contig ID Contig-U10879-1
Contig update 2002.12.18
Contig sequence
>Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Contig-U10879-1Q.Seq.d
AATTTTTATTTTGTGTGTGATTGAATTATTATTTATTTGTTTTTATTTAT
TTGTTTTAATTTCTTTATTTTCAATTACCCAAAAGATTATTATACATCAT
AATTATTCTATATGATTACGTACACGTTTTTTAAACAATTTCTAAAAATT
AATTTTTTAATAGCAAATTAAATTATCTACAAGATAATAATAATGGGAGT
AATGATTGTTTAAGTAGTTACTTTTAGGTAGTTTAATTTTAACACTTTCT
TTAATTGCATCAGCATTTTCAAGTAGTGTACCATTAACATTATGTATGTC
AGGTAGAGCACAAGGTACAGAATCATTAAATAAATCAGGGTCATGTGAAT
ATGGTGCTTATAATGGACCAACTGGACCTGGAACATTGACAGCAACATTG
AATGAATATTTCTATTCCTCTGGTGTGAAATGTGGTGATTGTTTCGAAGT
GTCAGGACCAAAGGGTAAAACAGTGGTTAGAGTCGTAAACTTTTGTTCAG
CAGGTACATGTCCATCCGAGAGACCATTGTTTATGTTAACACCAGATGCA
TTCCAAGAGATTTCCTCAGACCCATTATCGGTAGTATACGATGCAGGTTT
TAGAAAGGTTAGTTGTGATGCATCGGGTCCAATCAAAGCACAGGTTTCAG
----------ATTAATTAAAAAATAATAAAAACAATAAATAATAATAAAA
ATAATAAAAATAATAATAATAACAATACTAAATTTTATAATAATACTAAA
ATTAAATTTTATTTAAACTTTTTTTTTTTAAAAATAAAAATAAAAATAAA
ACAATGAGACTTTTAGGTAGTTTAATTTTAACACTTTCTTTAATTGCATC
AGCATTTTCAAGTAGTGTACCATTAACATTATGTATGTCAGGTAGAGCAC
AAGGTACAGAATCATTAAATAAATCAGGGTCATGTGAATATGGTGCTTAT
AATGGACCAACTGGACCTGGAACATTGACAGCAACATTGAATGAATATTT
CTATTCCTCTGGTGTGAAATGTGGTGATTGTTTCGAAGTGTCAGGACCAA
AGGGTAAAACAGTGGTTAGAGTCGTAAACTTTTGTTCAGCAGGTACATGT
CCATCCGAGAGACCCATTGTTTATGTTAACACCAGATGCATTCCAAGAGA
TTTCCTCAGACCCATTATCGGTAGTATACGATGCAGGTTTTAGAAAGGTT
AGTTGTGATGCATCGGGTCCAATCAAAGCACAGGTTTCAGAAGACTCTTC
AAAATACTATGTGAAACTATTGATTTTCAATAATGAAGTAGGCATTCAAT
CAGTCACTATCAAAGGCAAAGATATGAGCGCCCCTGTCACAATGGTCCGT
CAAGGAAGTGCCCAATTCGTTTGGAGTCAAGCTGGTAAAGAAATGATGTT
CCCTGCAACCCGTTGTGGTGTCATCACAATATGGGGGCAGTGTTACAATG
ACTATGAATTCCCTCTCTATGGATATCTTGAAATTCAGTGGTAATTTCGT
TGCACCAAAATCAAGTATAATTAAAAATGCACCAGCCTCATGCTCATTAT
CCGCTAGTCCTTTGGCAATCTACCAAAATGGGTTGACTGAAGGTTGGAAT
TATTGGTCATCACGTTCATATTCTCAAATTAATACAACCGATTCTTCATC
ACATAGTGTTGGTTCAACTAAATCTTTATCATTGGTTTTAATGGGTTCAT
CATCTGCATTGACATTGGCTCGTTCTGGTGATTTTGAAACCACCTATTTC
ACTGGCATTAAATTCAATATGAAAGCAAATACAACCATGAGTGGTCTTCG
TGTTTATTTCCCAAATGAACAAAATAAATATTGGACTCCATCATCACCAA
TTACAACCTCATGGGCCACTTATACAGTTCCATTCACATCTCTCCAACAT
AAAACAATTGAATCTGCATTCACTTTTGCCAATACTGAAAATATTAATGT
TCATATTAACATTGATAATATTCATTTCATTGCTTCTCCATCATCTGTTA
CAACTGGTTATGCTAATGGTAATGAAACTGCTAATAGTGGTTTAGCAACT
ACTACTGTAGCCTCAGGTGGTAGTGGTGCTTCAGGTGTTGCAACTTCAAG
TCATACTGGTGTTTCATCATCATCATCAACTGCTTCATCAACTGCTTCAT
CAACTGCTTCATCAATTGCTTCATCAACTGCCTCATCATCTGCCTCTTCA
ACTTCTGTCTCTTCAACAACTGCTGGTGGTAAAACAACTTCTGGAGGTAG
TGGTATTTCAACTAGTGGTATTACCGGAAGTGGTGATAGTATGGCTGCCT
CAACATCAAAAACTACCTCAAATCCAACTGGTAAAACCACTGGTATGACT
GGATCATCGATTGATCATAGTGAATCTCATTCATCTGATGAACATCATTC
ATCATCCTCAATCATTAAAGCTTCATTATTATTAGTATCTGCTGCTTTAG
CTTTTGCTTCACTTTAAAAATAACAGTAATAACAAACAACAATTTTTGAC
AAAAAAAAAA

Gap gap included
Contig length 2500
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1391626
End point 1393505
Strand (PLUS/MINUS) PLUS
Number of clones 24
Number of EST 44
Link to clone list U10879
List of clone(s)

est1=AFJ688F,1,620
est2=CHC232F,51,650
est3=CHC341F,58,562
est4=AFG183F,66,642
est5=CFJ352F,651,1224
est6=CFJ453F,651,1229
est7=CFK163F,651,895
est8=CHG652F,651,1228
est9=CHH356F,651,1182
est10=CHI811F,651,1140
est11=SFK135F,651,1231
est12=CFI860F,663,1100
est13=CHD519F,685,809
est14=CFG310F,705,1296
est15=CFI258F,782,1400
est16=CFH522F,809,1469
est17=CFF852F,867,1454
est18=CFC151F,998,1493
est19=CFD606F,1165,1718
est20=CFE386F,1167,1733
est21=SLA128E,1218,2492
est22=SFJ780F,1492,1813
est23=CFJ453Z,1679,2487
est24=AFJ688Z,1740,2432
est25=CHI811Z,1745,2487
est26=CFI258Z,1759,2442
est27=CFG310Z,1794,2437
est28=CHC341Z,1794,2485
est29=CFH522Z,1798,2438
est30=CHG652Z,1804,2331
est31=AFG183Z,1807,2476
est32=CHH356Z,1808,2486
est33=CFF852Z,1814,2485
est34=CFJ352Z,1815,2486
est35=CHC441Z,1860,2181
est36=CFI860Z,1861,2434
est37=CFK163Z,1874,2432
est38=CFD606Z,1918,2433
est39=CHC232Z,1996,2439
est40=SHC188F,2095,2499
est41=SHC188Z,2095,2481
est42=CFE386Z,2122,2427
est43=SFJ780Z,2133,2414
est44=CFC151Z,2276,2377
Translated Amino Acid sequence
ifilcviellficfylfvlislfsitqkiiihhnysi*lrtrflnnf*klif**qiklst
r***we**lfk*LLLGSLILTLSLIASAFSSSVPLTLCMSGRAQGTESLNKSGSCEYGAY
NGPTGPGTLTATLNEYFYSSGVKCGDCFEVSGPKGKTVVRVVNFCSAGTCPSERPLFMLT
PDAFQEISSDPLSVVYDAGFRKVSCDASGPIKAQVS---

---LIKK**kq*iiikiikiiiitilnfiiilklnfi*tfff*k*k*k*nnetfr*fnfn
tffncisifk*ctinimyvr*stryriik*irvm*iwcl*wtnwtwnidsnie*iflflw
cemw*lfrsvrtkg*nsg*srkllfsrymsirethclc*hqmhskrfpqthyr*ytmqvl
erlvvmhrvqskhrfqktlqntm*ny*fsimk*afnqslskaki*aplsqwsvkevpnsf
gvklvkk*cslqpvvvssqyggsvtmtmnslsmdilkfsgnfvapkssiiknapascsls
asplaiyqngltegwnywssrsysqinttdssshsvgstkslslvlmgsssaltlarsgd
fettyftgikfnmkanttmsglrvyfpneqnkywtpsspittswatytvpftslqhktie
saftfanteninvhinidnihfiaspssvttgyangnetansglatttvasggsgasgva
tsshtgvssssstasstasstassiasstasssasstsvssttaggkttsggsgistsgi
tgsgdsmaastskttsnptgkttgmtgssidhseshssdehhssssiikaslllvsaala
fasl*k*q**qttifdkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nfyfvcd*iiiylflficfnffifnypkdyyts*lfymitytffkqflkinflian*iiy
kiiimgvmiv*vvtfr*fnfntffncisifk*ctinimyvr*stryriik*irvm*iwcl
*wtnwtwnidsnie*iflflwcemw*lfrsvrtkg*nsg*srkllfsrymsiretivyvn
trciprdflrpiigsircrf*kg*l*cigsnqstgf---

---in*kiiktinnnknnknnnnnntkfynntkikfylnffflkikikikq*df*vv*f*
hfl*lhqhfqvvyh*hyvcqvehkvqnh*inqghvnmvlimdqldleh*qqh*mnisipl
v*nvvivskcqdqrvkqwles*tfvqqvhvhprdplfmltpdafqeissdplsvvydagf
rkvscdasgpikaqvsedsskyyvkllifnnevgiqsvtikgkdmsapvtmvrqgsaqfv
wsqagkemmfpatrcgvitiwgqcyndyefplygyleiqw*frctkikyn*kctslmlii
r*sfgnlpkwvd*rlellvitfifsn*ynrffit*cwfn*ifiigfngfiicidigsfw*
f*nhlfhwh*iqyeskynhewssclfpk*tk*ildsiitnynlmghlyssihispt*nn*
icihfcqy*ky*csy*h**ysfhcfsiicynwlc*w**nc**wfsnyycslrw*wcfrcc
nfksywcfiiiincfincfincfincfincliiclfnfclfnncww*nnfwr*wyfn*wy
yrkw**ygclniknylksnw*nhwydwiid*s**isfi**tsfiilnh*sfiiisiccfs
fcftlkitvitnnnf*qkk

Frame B:
ifilcviellficfylfvlislfsitqkiiihhnysi*lrtrflnnf*klif**qiklst
r***we**lfk*LLLGSLILTLSLIASAFSSSVPLTLCMSGRAQGTESLNKSGSCEYGAY
NGPTGPGTLTATLNEYFYSSGVKCGDCFEVSGPKGKTVVRVVNFCSAGTCPSERPLFMLT
PDAFQEISSDPLSVVYDAGFRKVSCDASGPIKAQVS---

---LIKK**kq*iiikiikiiiitilnfiiilklnfi*tfff*k*k*k*nnetfr*fnfn
tffncisifk*ctinimyvr*stryriik*irvm*iwcl*wtnwtwnidsnie*iflflw
cemw*lfrsvrtkg*nsg*srkllfsrymsirethclc*hqmhskrfpqthyr*ytmqvl
erlvvmhrvqskhrfqktlqntm*ny*fsimk*afnqslskaki*aplsqwsvkevpnsf
gvklvkk*cslqpvvvssqyggsvtmtmnslsmdilkfsgnfvapkssiiknapascsls
asplaiyqngltegwnywssrsysqinttdssshsvgstkslslvlmgsssaltlarsgd
fettyftgikfnmkanttmsglrvyfpneqnkywtpsspittswatytvpftslqhktie
saftfanteninvhinidnihfiaspssvttgyangnetansglatttvasggsgasgva
tsshtgvssssstasstasstassiasstasssasstsvssttaggkttsggsgistsgi
tgsgdsmaastskttsnptgkttgmtgssidhseshssdehhssssiikaslllvsaala
fasl*k*q**qttifdkkk

Frame C:
flfcv*lnyylfvfiylf*flyfqlpkrllyiiiilydyvhvf*tiskn*ffnsklnylq
dnnngsndclssyf*vv*f*hfl*lhqhfqvvyh*hyvcqvehkvqnh*inqghvnmvli
mdqldleh*qqh*mnisiplv*nvvivskcqdqrvkqwles*tfvqqvhvhprdhclc*h
qmhskrfpqthyr*ytmqvlerlvvmhrvqskhrfq---

---*lknnknnk***k**k****qy*il**y*n*ilfklfffknknknktmrllgslilt
lsliasafsssvpltlcmsgraqgteslnksgsceygayngptgpgtltatlneyfyssg
vkcgdcfevsgpkgktvvrvvnfcsagtcpserpivyvntrciprdflrpiigsircrf*
kg*l*cigsnqstgfrrlfkilcetidfq**srhsishyqrqryerpchngpsrkcpirl
essw*rndvpcnplwchhnmgavlq*l*ipslwis*nsvvislhqnqv*lkmhqphahyp
lvlwqstkmg*lkvgiighhvhilkliqpilhhivlvqlnlyhwf*wvhhlh*hwlvlvi
lkppislalnsi*kqiqp*vvfvfisqmnkiniglhhhqlqphgpliqfhshlsnikqln
lhsllpilkilmfiltliifislllhhllqlvmlmvmkllivv*qlll*pqvvvvlqvlq
lqvilvfhhhhqllhqllhqllhqllhqlphhlplqllslqqllvvkqllevvvfqlvvl
pevvivwlpqhqklpqiqlvkplv*ldhrliivnlihlmniihhpqslklhyy*ylll*l
llhfknnsnnkqqfltkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10879-1 (Contig-U10879-1Q)
/CSM_Contig/Contig-U10879-1Q.Seq.d
(2510 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Conti... 2599 0.0
Contig-U10362-1 (Contig-U10362-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U05319-1 (Contig-U05319-1Q) /CSM_Contig/Conti... 40 0.011
Contig-U08873-1 (Contig-U08873-1Q) /CSM_Contig/Conti... 38 0.045
Contig-U14739-1 (Contig-U14739-1Q) /CSM_Contig/Conti... 36 0.18
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti... 36 0.18
Contig-U12097-1 (Contig-U12097-1Q) /CSM_Contig/Conti... 36 0.18
Contig-U11514-1 (Contig-U11514-1Q) /CSM_Contig/Conti... 36 0.18
Contig-U03407-1 (Contig-U03407-1Q) /CSM_Contig/Conti... 32 2.8

>Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Contig-U10879-1Q.Seq.d
Length = 2510

Score = 2599 bits (1311), Expect = 0.0
Identities = 1311/1311 (100%)
Strand = Plus / Plus


Query: 802 caatgagacttttaggtagtttaattttaacactttctttaattgcatcagcattttcaa 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caatgagacttttaggtagtttaattttaacactttctttaattgcatcagcattttcaa 861


Query: 862 gtagtgtaccattaacattatgtatgtcaggtagagcacaaggtacagaatcattaaata 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtagtgtaccattaacattatgtatgtcaggtagagcacaaggtacagaatcattaaata 921


Query: 922 aatcagggtcatgtgaatatggtgcttataatggaccaactggacctggaacattgacag 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 aatcagggtcatgtgaatatggtgcttataatggaccaactggacctggaacattgacag 981


Query: 982 caacattgaatgaatatttctattcctctggtgtgaaatgtggtgattgtttcgaagtgt 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 caacattgaatgaatatttctattcctctggtgtgaaatgtggtgattgtttcgaagtgt 1041


Query: 1042 caggaccaaagggtaaaacagtggttagagtcgtaaacttttgttcagcaggtacatgtc 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 caggaccaaagggtaaaacagtggttagagtcgtaaacttttgttcagcaggtacatgtc 1101


Query: 1102 catccgagagacccattgtttatgttaacaccagatgcattccaagagatttcctcagac 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 catccgagagacccattgtttatgttaacaccagatgcattccaagagatttcctcagac 1161


Query: 1162 ccattatcggtagtatacgatgcaggttttagaaaggttagttgtgatgcatcgggtcca 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 ccattatcggtagtatacgatgcaggttttagaaaggttagttgtgatgcatcgggtcca 1221


Query: 1222 atcaaagcacaggtttcagaagactcttcaaaatactatgtgaaactattgattttcaat 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 atcaaagcacaggtttcagaagactcttcaaaatactatgtgaaactattgattttcaat 1281


Query: 1282 aatgaagtaggcattcaatcagtcactatcaaaggcaaagatatgagcgcccctgtcaca 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 aatgaagtaggcattcaatcagtcactatcaaaggcaaagatatgagcgcccctgtcaca 1341


Query: 1342 atggtccgtcaaggaagtgcccaattcgtttggagtcaagctggtaaagaaatgatgttc 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 atggtccgtcaaggaagtgcccaattcgtttggagtcaagctggtaaagaaatgatgttc 1401


Query: 1402 cctgcaacccgttgtggtgtcatcacaatatgggggcagtgttacaatgactatgaattc 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 cctgcaacccgttgtggtgtcatcacaatatgggggcagtgttacaatgactatgaattc 1461


Query: 1462 cctctctatggatatcttgaaattcagtggtaatttcgttgcaccaaaatcaagtataat 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 cctctctatggatatcttgaaattcagtggtaatttcgttgcaccaaaatcaagtataat 1521


Query: 1522 taaaaatgcaccagcctcatgctcattatccgctagtcctttggcaatctaccaaaatgg 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 taaaaatgcaccagcctcatgctcattatccgctagtcctttggcaatctaccaaaatgg 1581


Query: 1582 gttgactgaaggttggaattattggtcatcacgttcatattctcaaattaatacaaccga 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gttgactgaaggttggaattattggtcatcacgttcatattctcaaattaatacaaccga 1641


Query: 1642 ttcttcatcacatagtgttggttcaactaaatctttatcattggttttaatgggttcatc 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 ttcttcatcacatagtgttggttcaactaaatctttatcattggttttaatgggttcatc 1701


Query: 1702 atctgcattgacattggctcgttctggtgattttgaaaccacctatttcactggcattaa 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 atctgcattgacattggctcgttctggtgattttgaaaccacctatttcactggcattaa 1761


Query: 1762 attcaatatgaaagcaaatacaaccatgagtggtcttcgtgtttatttcccaaatgaaca 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 attcaatatgaaagcaaatacaaccatgagtggtcttcgtgtttatttcccaaatgaaca 1821


Query: 1822 aaataaatattggactccatcatcaccaattacaacctcatgggccacttatacagttcc 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 aaataaatattggactccatcatcaccaattacaacctcatgggccacttatacagttcc 1881


Query: 1882 attcacatctctccaacataaaacaattgaatctgcattcacttttgccaatactgaaaa 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 attcacatctctccaacataaaacaattgaatctgcattcacttttgccaatactgaaaa 1941


Query: 1942 tattaatgttcatattaacattgataatattcatttcattgcttctccatcatctgttac 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tattaatgttcatattaacattgataatattcatttcattgcttctccatcatctgttac 2001


Query: 2002 aactggttatgctaatggtaatgaaactgctaatagtggtttagcaactactactgtagc 2061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 aactggttatgctaatggtaatgaaactgctaatagtggtttagcaactactactgtagc 2061


Query: 2062 ctcaggtggtagtggtgcttcaggtgttgcaacttcaagtcatactggtgt 2112
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 ctcaggtggtagtggtgcttcaggtgttgcaacttcaagtcatactggtgt 2112


Score = 1148 bits (579), Expect = 0.0
Identities = 579/579 (100%)
Strand = Plus / Plus


Query: 72 caattacccaaaagattattatacatcataattattctatatgattacgtacacgttttt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 caattacccaaaagattattatacatcataattattctatatgattacgtacacgttttt 131


Query: 132 taaacaatttctaaaaattaattttttaatagcaaattaaattatctacaagataataat 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 taaacaatttctaaaaattaattttttaatagcaaattaaattatctacaagataataat 191


Query: 192 aatgggagtaatgattgtttaagtagttacttttaggtagtttaattttaacactttctt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aatgggagtaatgattgtttaagtagttacttttaggtagtttaattttaacactttctt 251


Query: 252 taattgcatcagcattttcaagtagtgtaccattaacattatgtatgtcaggtagagcac 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taattgcatcagcattttcaagtagtgtaccattaacattatgtatgtcaggtagagcac 311


Query: 312 aaggtacagaatcattaaataaatcagggtcatgtgaatatggtgcttataatggaccaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaggtacagaatcattaaataaatcagggtcatgtgaatatggtgcttataatggaccaa 371


Query: 372 ctggacctggaacattgacagcaacattgaatgaatatttctattcctctggtgtgaaat 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctggacctggaacattgacagcaacattgaatgaatatttctattcctctggtgtgaaat 431


Query: 432 gtggtgattgtttcgaagtgtcaggaccaaagggtaaaacagtggttagagtcgtaaact 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtggtgattgtttcgaagtgtcaggaccaaagggtaaaacagtggttagagtcgtaaact 491


Query: 492 tttgttcagcaggtacatgtccatccgagagaccattgtttatgttaacaccagatgcat 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttgttcagcaggtacatgtccatccgagagaccattgtttatgttaacaccagatgcat 551


Query: 552 tccaagagatttcctcagacccattatcggtagtatacgatgcaggttttagaaaggtta 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tccaagagatttcctcagacccattatcggtagtatacgatgcaggttttagaaaggtta 611


Query: 612 gttgtgatgcatcgggtccaatcaaagcacaggtttcag 650
|||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gttgtgatgcatcgggtccaatcaaagcacaggtttcag 650


Score = 841 bits (424), Expect = 0.0
Identities = 431/432 (99%), Gaps = 1/432 (0%)
Strand = Plus / Plus


Query: 220 acttttaggtagtttaattttaacactttctttaattgcatcagcattttcaagtagtgt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 acttttaggtagtttaattttaacactttctttaattgcatcagcattttcaagtagtgt 868


Query: 280 accattaacattatgtatgtcaggtagagcacaaggtacagaatcattaaataaatcagg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 accattaacattatgtatgtcaggtagagcacaaggtacagaatcattaaataaatcagg 928


Query: 340 gtcatgtgaatatggtgcttataatggaccaactggacctggaacattgacagcaacatt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gtcatgtgaatatggtgcttataatggaccaactggacctggaacattgacagcaacatt 988


Query: 400 gaatgaatatttctattcctctggtgtgaaatgtggtgattgtttcgaagtgtcaggacc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 gaatgaatatttctattcctctggtgtgaaatgtggtgattgtttcgaagtgtcaggacc 1048


Query: 460 aaagggtaaaacagtggttagagtcgtaaacttttgttcagcaggtacatgtccatccga 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 aaagggtaaaacagtggttagagtcgtaaacttttgttcagcaggtacatgtccatccga 1108


Query: 520 gaga-ccattgtttatgttaacaccagatgcattccaagagatttcctcagacccattat 578
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 gagacccattgtttatgttaacaccagatgcattccaagagatttcctcagacccattat 1168


Query: 579 cggtagtatacgatgcaggttttagaaaggttagttgtgatgcatcgggtccaatcaaag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 cggtagtatacgatgcaggttttagaaaggttagttgtgatgcatcgggtccaatcaaag 1228


Query: 639 cacaggtttcag 650
||||||||||||
Sbjct: 1229 cacaggtttcag 1240


Score = 841 bits (424), Expect = 0.0
Identities = 431/432 (99%), Gaps = 1/432 (0%)
Strand = Plus / Plus


Query: 809 acttttaggtagtttaattttaacactttctttaattgcatcagcattttcaagtagtgt 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 acttttaggtagtttaattttaacactttctttaattgcatcagcattttcaagtagtgt 279


Query: 869 accattaacattatgtatgtcaggtagagcacaaggtacagaatcattaaataaatcagg 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 accattaacattatgtatgtcaggtagagcacaaggtacagaatcattaaataaatcagg 339


Query: 929 gtcatgtgaatatggtgcttataatggaccaactggacctggaacattgacagcaacatt 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtcatgtgaatatggtgcttataatggaccaactggacctggaacattgacagcaacatt 399


Query: 989 gaatgaatatttctattcctctggtgtgaaatgtggtgattgtttcgaagtgtcaggacc 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaatgaatatttctattcctctggtgtgaaatgtggtgattgtttcgaagtgtcaggacc 459


Query: 1049 aaagggtaaaacagtggttagagtcgtaaacttttgttcagcaggtacatgtccatccga 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaagggtaaaacagtggttagagtcgtaaacttttgttcagcaggtacatgtccatccga 519


Query: 1109 gagacccattgtttatgttaacaccagatgcattccaagagatttcctcagacccattat 1168
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaga-ccattgtttatgttaacaccagatgcattccaagagatttcctcagacccattat 578


Query: 1169 cggtagtatacgatgcaggttttagaaaggttagttgtgatgcatcgggtccaatcaaag 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cggtagtatacgatgcaggttttagaaaggttagttgtgatgcatcgggtccaatcaaag 638


Query: 1229 cacaggtttcag 1240
||||||||||||
Sbjct: 639 cacaggtttcag 650


Score = 642 bits (324), Expect = 0.0
Identities = 324/324 (100%)
Strand = Plus / Plus


Query: 2177 actgcctcatcatctgcctcttcaacttctgtctcttcaacaactgctggtggtaaaaca 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 actgcctcatcatctgcctcttcaacttctgtctcttcaacaactgctggtggtaaaaca 2236


Query: 2237 acttctggaggtagtggtatttcaactagtggtattaccggaagtggtgatagtatggct 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 acttctggaggtagtggtatttcaactagtggtattaccggaagtggtgatagtatggct 2296


Query: 2297 gcctcaacatcaaaaactacctcaaatccaactggtaaaaccactggtatgactggatca 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 gcctcaacatcaaaaactacctcaaatccaactggtaaaaccactggtatgactggatca 2356


Query: 2357 tcgattgatcatagtgaatctcattcatctgatgaacatcattcatcatcctcaatcatt 2416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 tcgattgatcatagtgaatctcattcatctgatgaacatcattcatcatcctcaatcatt 2416


Query: 2417 aaagcttcattattattagtatctgctgctttagcttttgcttcactttaaaaataacag 2476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 aaagcttcattattattagtatctgctgctttagcttttgcttcactttaaaaataacag 2476


Query: 2477 taataacaaacaacaatttttgac 2500
||||||||||||||||||||||||
Sbjct: 2477 taataacaaacaacaatttttgac 2500


>Contig-U10362-1 (Contig-U10362-1Q) /CSM_Contig/Contig-U10362-1Q.Seq.d
Length = 854

Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 137 aatttctaaaaattaattttttaat 161
||||| |||||||||||||||||||
Sbjct: 801 aatttttaaaaattaattttttaat 777


>Contig-U05319-1 (Contig-U05319-1Q) /CSM_Contig/Contig-U05319-1Q.Seq.d
Length = 564

Score = 40.1 bits (20), Expect = 0.011
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 2317 ctcaaatccaactggtaaaa 2336
||||||||||||||||||||
Sbjct: 129 ctcaaatccaactggtaaaa 148


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,565
Number of Sequences: 6905
Number of extensions: 36565
Number of successful extensions: 3099
Number of sequences better than 10.0: 101
length of query: 2510
length of database: 5,674,871
effective HSP length: 17
effective length of query: 2493
effective length of database: 5,557,486
effective search space: 13854812598
effective search space used: 13854812598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Contig-U10879-1Q.Seq.d
(2510 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060076) Dictyostelium discoideum slug cDNA, clone SLA128. 1070 0.0 2
(BJ359052) Dictyostelium discoideum cDNA clone:ddc12h14, 5' ... 1059 0.0 2
(BJ361517) Dictyostelium discoideum cDNA clone:ddc17c16, 5' ... 852 0.0 2
(BJ375687) Dictyostelium discoideum cDNA clone:ddc19j14, 3' ... 791 0.0 4
(BJ361198) Dictyostelium discoideum cDNA clone:ddc16k05, 5' ... 749 0.0 3
(BJ361112) Dictyostelium discoideum cDNA clone:ddc9l21, 5' e... 662 0.0 2
(BJ360822) Dictyostelium discoideum cDNA clone:ddc8k02, 5' e... 632 0.0 2
(BJ380713) Dictyostelium discoideum cDNA clone:ddc39f04, 3' ... 607 0.0 4
(BJ359144) Dictyostelium discoideum cDNA clone:ddc13d03, 5' ... 852 0.0 2
(BJ344914) Dictyostelium discoideum cDNA clone:dda20o22, 3' ... 676 0.0 3
(BJ363400) Dictyostelium discoideum cDNA clone:ddc26o08, 5' ... 837 0.0 4
(BJ375120) Dictyostelium discoideum cDNA clone:ddc17c16, 3' ... 638 0.0 3
(BJ325314) Dictyostelium discoideum cDNA clone:dda13e21, 5' ... 837 0.0 4
(BJ360320) Dictyostelium discoideum cDNA clone:ddc5e13, 5' e... 589 0.0 3
(BJ327578) Dictyostelium discoideum cDNA clone:dda20o22, 5' ... 795 0.0 4
(BJ377874) Dictyostelium discoideum cDNA clone:ddc26b11, 3' ... 565 0.0 4
(BJ380009) Dictyostelium discoideum cDNA clone:ddc36p13, 3' ... 543 0.0 4
(BJ342394) Dictyostelium discoideum cDNA clone:dda13e21, 3' ... 543 0.0 5
(BJ375679) Dictyostelium discoideum cDNA clone:ddc19h13, 3' ... 529 0.0 4
(BJ374754) Dictyostelium discoideum cDNA clone:ddc16k05, 3' ... 563 0.0 3
(BJ372430) Dictyostelium discoideum cDNA clone:ddc12h14, 3' ... 523 0.0 4
(BJ372533) Dictyostelium discoideum cDNA clone:ddc13d03, 3' ... 571 0.0 4
(BJ390139) Dictyostelium discoideum cDNA clone:dds21e09, 5' ... 852 0.0 1
(BJ363363) Dictyostelium discoideum cDNA clone:ddc26b11, 5' ... 767 0.0 2
(BJ361985) Dictyostelium discoideum cDNA clone:ddc19j14, 5' ... 844 0.0 1
(BJ361978) Dictyostelium discoideum cDNA clone:ddc19h13, 5' ... 842 0.0 1
(BJ365494) Dictyostelium discoideum cDNA clone:ddc35g14, 5' ... 809 0.0 1
(BJ379659) Dictyostelium discoideum cDNA clone:ddc35g14, 3' ... 537 0.0 2
(C25518) Dictyostelium discoideum slug cDNA, clone SLA128. 329 0.0 4
(BJ375405) Dictyostelium discoideum cDNA clone:ddc18h16, 3' ... 438 0.0 3
(BJ365820) Dictyostelium discoideum cDNA clone:ddc36p13, 5' ... 724 0.0 1
(BJ376223) Dictyostelium discoideum cDNA clone:ddc21m15, 3' ... 319 e-180 5
(BJ374491) Dictyostelium discoideum cDNA clone:ddc8k02, 3' e... 313 e-171 3
(BJ361748) Dictyostelium discoideum cDNA clone:ddc18h16, 5' ... 613 e-170 1
(BJ366463) Dictyostelium discoideum cDNA clone:ddc39f04, 5' ... 609 e-169 1
(BJ390036) Dictyostelium discoideum cDNA clone:dds20p19, 5' ... 513 e-162 3
(BJ377925) Dictyostelium discoideum cDNA clone:ddc26o08, 3' ... 313 e-124 3
(BJ392789) Dictyostelium discoideum cDNA clone:dds28o21, 5' ... 305 e-120 2
(BJ377875) Dictyostelium discoideum cDNA clone:ddc26b12, 3' ... 434 e-117 1
(BJ404570) Dictyostelium discoideum cDNA clone:dds28o21, 3' ... 305 e-115 2
(BJ374695) Dictyostelium discoideum cDNA clone:ddc9l21, 3' e... 262 4e-76 3
(BJ402247) Dictyostelium discoideum cDNA clone:dds20p19, 3' ... 252 6e-62 1
(BJ362414) Dictyostelium discoideum cDNA clone:ddc21m15, 5' ... 174 1e-38 1
(BJ373947) Dictyostelium discoideum cDNA clone:ddc5e13, 3' e... 131 1e-25 1
(DW261390) UI-S-GG1-abe-d-07-0-UI.s1 UI-S-GG1 Euprymna scolo... 54 0.027 1
(E27529) Novel collagen-like protein. 38 0.21 2
(CU424490) Medicago truncatula chromosome 5 clone mth2-95h16... 50 0.41 1
(AC134946) Rattus norvegicus clone CH230-276M20, *** SEQUENC... 50 0.41 1
(AC102971) Rattus norvegicus clone CH230-44K16, *** SEQUENCI... 50 0.41 1
(DH820662) Rattus norvegicus DNA, BAC clone: RNB1-424G05, 3'... 50 0.41 1
(DH802722) Rattus norvegicus DNA, BAC clone: RNB1-398N09, 3'... 50 0.41 1
(DH755193) Rattus norvegicus DNA, BAC clone: RNB1-334K15, 5'... 50 0.41 1
(CT596728) Danio rerio EST, clone ZF_mu_85p07 3'. 46 3.2 2
(CV983897) UMC-bof_0B02-002-e05 Ovarian Follicle bof Bos tau... 40 3.7 3
(AC142013) Rattus norvegicus clone CH230-290L23, *** SEQUENC... 40 3.9 3
(AM032243) Bos sp. 3' EST, clone C0007408g01. 40 4.2 3
(BX510342) Zebrafish DNA sequence from clone DKEY-15I15 in l... 46 6.5 1
(AL645467) Mouse DNA sequence from clone RP23-131H22 on chro... 46 6.5 1
(AM910996) Plasmodium knowlesi strain H chromosome 14, compl... 46 6.5 1
(AC150156) Gallus gallus clone WAG-8K5, WORKING DRAFT SEQUENCE. 46 6.5 1
(AC150077) Gallus gallus clone TAM31-15J4, WORKING DRAFT SEQ... 46 6.5 1
(AC150036) Gallus gallus clone CH261-10E15, WORKING DRAFT SE... 46 6.5 1
(AC025874) Mus musculus clone RP23-58C21, WORKING DRAFT SEQU... 46 6.5 1
(FH646855) CHO_OF4987xf12f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 6.5 1
(FH493948) CHO_OF4610xb05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 6.5 1
(FH318970) CHO_OF4493xl14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 6.5 1
(EJ887610) 1093018425825 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.5 1
(EE397620) RM_L_05143 rare minnow liver cDNA Library Gobiocy... 46 6.5 1
(DT138771) JGI_ANNO17797.fwd ANNO Pimephales promelas Whole ... 46 6.5 1
(DT130253) JGI_ANNO12750.fwd ANNO Pimephales promelas Whole ... 46 6.5 1

>(AU060076) Dictyostelium discoideum slug cDNA, clone SLA128.
Length = 721

Score = 1070 bits (540), Expect(2) = 0.0
Identities = 540/540 (100%)
Strand = Plus / Plus


Query: 1410 ccgttgtggtgtcatcacaatatgggggcagtgttacaatgactatgaattccctctcta 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccgttgtggtgtcatcacaatatgggggcagtgttacaatgactatgaattccctctcta 241


Query: 1470 tggatatcttgaaattcagtggtaatttcgttgcaccaaaatcaagtataattaaaaatg 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tggatatcttgaaattcagtggtaatttcgttgcaccaaaatcaagtataattaaaaatg 301


Query: 1530 caccagcctcatgctcattatccgctagtcctttggcaatctaccaaaatgggttgactg 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caccagcctcatgctcattatccgctagtcctttggcaatctaccaaaatgggttgactg 361


Query: 1590 aaggttggaattattggtcatcacgttcatattctcaaattaatacaaccgattcttcat 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaggttggaattattggtcatcacgttcatattctcaaattaatacaaccgattcttcat 421


Query: 1650 cacatagtgttggttcaactaaatctttatcattggttttaatgggttcatcatctgcat 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cacatagtgttggttcaactaaatctttatcattggttttaatgggttcatcatctgcat 481


Query: 1710 tgacattggctcgttctggtgattttgaaaccacctatttcactggcattaaattcaata 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgacattggctcgttctggtgattttgaaaccacctatttcactggcattaaattcaata 541


Query: 1770 tgaaagcaaatacaaccatgagtggtcttcgtgtttatttcccaaatgaacaaaataaat 1829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgaaagcaaatacaaccatgagtggtcttcgtgtttatttcccaaatgaacaaaataaat 601


Query: 1830 attggactccatcatcaccaattacaacctcatgggccacttatacagttccattcacat 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 attggactccatcatcaccaattacaacctcatgggccacttatacagttccattcacat 661


Query: 1890 ctctccaacataaaacaattgaatctgcattcacttttgccaatactgaaaatattaatg 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctctccaacataaaacaattgaatctgcattcacttttgccaatactgaaaatattaatg 721

Score = 363 bits (183), Expect(2) = 0.0
Identities = 183/183 (100%)
Strand = Plus / Plus


Query: 1228 gcacaggtttcagaagactcttcaaaatactatgtgaaactattgattttcaataatgaa 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacaggtttcagaagactcttcaaaatactatgtgaaactattgattttcaataatgaa 60


Query: 1288 gtaggcattcaatcagtcactatcaaaggcaaagatatgagcgcccctgtcacaatggtc 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtaggcattcaatcagtcactatcaaaggcaaagatatgagcgcccctgtcacaatggtc 120


Query: 1348 cgtcaaggaagtgcccaattcgtttggagtcaagctggtaaagaaatgatgttccctgca 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtcaaggaagtgcccaattcgtttggagtcaagctggtaaagaaatgatgttccctgca 180


Query: 1408 acc 1410
|||
Sbjct: 181 acc 183

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,261,691,709
Number of extensions: 131712277
Number of successful extensions: 9809315
Number of sequences better than 10.0: 71
Length of query: 2510
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2485
Effective length of database: 97,216,030,006
Effective search space: 241581834564910
Effective search space used: 241581834564910
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Contig-U10879-1Q.Seq.d
(2510 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54PA4) RecName: Full=Expansin-like protein 2; Short=D... 51 9e-06
(Q55G31) RecName: Full=Expansin-like protein 1; Short=D... 44 2e-04
EU961089_1(EU961089|pid:none) Zea mays clone 232730 alpha-expans... 50 4e-04
AM452054_1(AM452054|pid:none) Vitis vinifera contig VV78X006594.... 45 0.010
AF394561_1(AF394561|pid:none) Oryza sativa alpha-expansin OsEXPA... 45 0.013
AF512541_1(AF512541|pid:none) Gossypium hirsutum alpha-expansin ... 44 0.022
DQ515800_1(DQ515800|pid:none) Ipomoea batatas expansin mRNA, com... 42 0.083
AF230333_1(AF230333|pid:none) Zinnia elegans expansin 3 mRNA, co... 41 0.18
AM466521_1(AM466521|pid:none) Vitis vinifera contig VV78X274004.... 41 0.18
AY131157_1(AY131157|pid:none) Physcomitrella patens alpha expans... 41 0.18
AF350936_1(AF350936|pid:none) Prunus cerasus expansin (EXP1) mRN... 41 0.24
AM427645_1(AM427645|pid:none) Vitis vinifera contig VV78X009641.... 41 0.24
AB047518_1(AB047518|pid:none) Prunus persica PpExp2 mRNA for exp... 40 0.32
AB099927_1(AB099927|pid:none) Malus x domestica MdEXPA2 mRNA for... 40 0.32
AB099925_1(AB099925|pid:none) Malus x domestica MdEXPA4 mRNA for... 40 0.32
EU340362_1(EU340362|pid:none) Prunus salicina expansin mRNA, com... 40 0.32
EU430293_1(EU430293|pid:none) Cucumis sativus alpha-expansin 11 ... 40 0.32
EF644238_1(EF644238|pid:none) Gossypium hirsutum A genome clone ... 40 0.32
AC148485_7(AC148485|pid:none) Medicago truncatula clone mth2-46j... 40 0.32
EF148102_1(EF148102|pid:none) Populus trichocarpa clone WS0127_J... 40 0.32
T50656(T50656) expansin EXP2 [imported] - Arabidopsis thaliana ... 40 0.32
FB898396_1(FB898396|pid:none) Sequence 117669 from Patent WO2008... 40 0.32
AB029083_1(AB029083|pid:none) Prunus persica PpExp1 mRNA for exp... 40 0.32
FB898468_1(FB898468|pid:none) Sequence 117741 from Patent WO2008... 40 0.41
(Q38866) RecName: Full=Expansin-A2; Short=AtEXPA2; AltN... 40 0.41
FB898286_1(FB898286|pid:none) Sequence 117559 from Patent WO2008... 40 0.41
AF332170_1(AF332170|pid:none) Zea mays alpha-expansin 2 (expA2) ... 40 0.41
FB898284_1(FB898284|pid:none) Sequence 117557 from Patent WO2008... 40 0.41
AF319469_1(AF319469|pid:none) Cucumis sativus alpha-expansin 3 p... 40 0.41
AJ289154_1(AJ289154|pid:none) Glycine max partial mRNA for expan... 40 0.41
CP000113_3477(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 40 0.41
AF539640_1(AF539640|pid:none) Musa acuminata expansin1 (EXP1) ge... 40 0.41
AF226702_1(AF226702|pid:none) Fragaria x ananassa expansin 5 (Ex... 39 0.51
DQ314759_1(DQ314759|pid:none) Solanum tuberosum beta expansin 2 ... 40 0.54
AF167364_1(AF167364|pid:none) Rumex palustris expansin (EXP5) ge... 40 0.54
FJ449892_1(FJ449892|pid:none) Ziziphus jujuba alpha-expansin mRN... 40 0.54
AB093031_1(AB093031|pid:none) Pyrus communis PcExp4 mRNA for exp... 39 0.70
EF571856_1(EF571856|pid:none) Pyrus pyrifolia expansin mRNA, par... 39 0.70
BT055403_1(BT055403|pid:none) Zea mays full-length cDNA clone ZM... 39 0.70
FJ619347_1(FJ619347|pid:none) Pyrus pyrifolia expansin 2 mRNA, c... 39 0.70
DQ205653_1(DQ205653|pid:none) Lycopersicon esculentum beta expan... 39 0.70
AF448467_1(AF448467|pid:none) Prunus cerasus alpha-expansin mRNA... 39 0.70
EF644237_1(EF644237|pid:none) Gossypium barbadense A genome clon... 39 0.92
AF059489_1(AF059489|pid:none) Lycopersicon esculentum expansin p... 39 0.92
FJ619348_1(FJ619348|pid:none) Pyrus pyrifolia expansin 3 mRNA, c... 39 0.92
EF602031_1(EF602031|pid:none) Pyrus pyrifolia expansin 1 (EXP1) ... 39 0.92
DQ915940_1(DQ915940|pid:none) Actinidia deliciosa EXP2 mRNA, par... 39 0.92
EU123920_1(EU123920|pid:none) Eriobotrya japonica expansin 2 (EX... 39 0.92
EU123919_1(EU123919|pid:none) Eriobotrya japonica expansin 1 (EX... 39 0.92
AF226701_1(AF226701|pid:none) Fragaria x ananassa expansin 4 (Ex... 39 0.92
AB370118_1(AB370118|pid:none) Rosa hybrid cultivar RhEXPA3 mRNA ... 39 0.92
AP007164_624(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 36 0.98
AM920437_1589(AM920437|pid:none) Penicillium chrysogenum Wiscons... 38 0.99
AF230278_1(AF230278|pid:none) Triphysaria versicolor clone TvEXP... 39 1.2
AC140025_6(AC140025|pid:none) Medicago truncatula clone mth2-11i... 39 1.2
AB196980_1(AB196980|pid:none) Sagittaria pygmaea SpEXPA2 mRNA fo... 39 1.2
EF434784_1(EF434784|pid:none) Calotropis procera alpha expansin ... 39 1.2
FJ457026_1(FJ457026|pid:none) Annona cherimola expansin (Exp2) m... 39 1.2
AF512544_1(AF512544|pid:none) Gossypium hirsutum alpha-expansin ... 38 1.6
AF319474_1(AF319474|pid:none) Cucumis sativus alpha-expansin 8 m... 38 1.6
(Q9LQ07) RecName: Full=Expansin-A18; Short=AtEXPA18; Al... 38 1.6
(A2Y5R6) RecName: Full=Expansin-A4; AltName: Full=OsEXPA4; AltNa... 38 2.0
EF434781_1(EF434781|pid:none) Calotropis procera alpha expansin ... 38 2.0
FJ042664_1(FJ042664|pid:none) Gladiolus grandiflorus expansion-r... 38 2.0
AB054319_1(AB054319|pid:none) Prunus persica PpExp4 mRNA for exp... 38 2.0
EU123921_1(EU123921|pid:none) Eriobotrya japonica expansin 3 (EX... 37 2.3
DQ204496_1(DQ204496|pid:none) Gossypium hirsutum alpha-expansin ... 37 2.7
AF428182_1(AF428182|pid:none) Rumex palustris expansin 15 precur... 37 2.7
AY910581_1(AY910581|pid:none) Triticum aestivum expansin EXPA11 ... 37 2.7
(Q9C554) RecName: Full=Expansin-A1; Short=AtEXPA1; AltN... 37 2.7
AY079206_1(AY079206|pid:none) Mirabilis jalapa cell wall protein... 37 2.7
AJ291816_1(AJ291816|pid:none) Cicer arietinum mRNA for alpha-exp... 37 2.7
(Q4PNY1) RecName: Full=Expansin-A11; AltName: Full=OsEXPA11; Alt... 37 2.7
AY485121_1(AY485121|pid:none) Triticum aestivum expansin EXPA1 m... 37 2.7
DQ062981_1(DQ062981|pid:none) Oryza sativa (japonica cultivar-gr... 37 2.7
FB898258_1(FB898258|pid:none) Sequence 117531 from Patent WO2008... 37 2.7
EF446292_1(EF446292|pid:none) Litchi chinensis expansin (Exp1) m... 37 2.7
FB898350_1(FB898350|pid:none) Sequence 117623 from Patent WO2008... 37 2.7
AK318655_1(AK318655|pid:none) Arabidopsis thaliana AT1G69530 mRN... 37 2.7
CP000909_214(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 37 3.5
FB898518_1(FB898518|pid:none) Sequence 117791 from Patent WO2008... 37 3.5
(Q38864) RecName: Full=Expansin-A5; Short=AtEXPA5; AltN... 37 3.5
AF332169_1(AF332169|pid:none) Zea mays alpha-expansin (expA1) mR... 37 3.5
AF159563_1(AF159563|pid:none) Fragaria x ananassa expansin (Exp2... 37 3.5
FJ769424_1(FJ769424|pid:none) Citrus sinensis expansin 2 (EXP2) ... 37 3.5
AB099926_1(AB099926|pid:none) Malus x domestica MdEXPA3 mRNA for... 37 3.5
AM427950_2(AM427950|pid:none) Vitis vinifera contig VV78X122096.... 37 3.5
(Q9LDR9) RecName: Full=Expansin-A10; Short=AtEXPA10; Al... 37 3.5
(Q9M4X7) RecName: Full=Expansin-A6; AltName: Full=OsEXPA6; AltNa... 37 3.5
FB898590_1(FB898590|pid:none) Sequence 117863 from Patent WO2008... 37 4.6
AY500147_1(AY500147|pid:none) Craterostigma plantagineum expansi... 37 4.6
AF319473_1(AF319473|pid:none) Cucumis sativus alpha-expansin 7 p... 37 4.6
AF049353_1(AF049353|pid:none) Nicotiana tabacum alpha-expansin p... 37 4.6
(Q850K7) RecName: Full=Expansin-like B1; AltName: Full=OsEXLB1; ... 37 4.6
AF466188_1(AF466188|pid:none) Oryza sativa (japonica cultivar-gr... 37 4.6
FB898298_1(FB898298|pid:none) Sequence 117571 from Patent WO2008... 37 4.6
AX306496_1(AX306496|pid:none) Sequence 7 from Patent WO0188163. 37 4.6
AF167359_1(AF167359|pid:none) Rumex acetosa expansin (EXP4) gene... 37 4.6
AB093030_1(AB093030|pid:none) Pyrus communis PcExp3 mRNA for exp... 37 4.6
FB898554_1(FB898554|pid:none) Sequence 117827 from Patent WO2008... 37 4.6
FB898302_1(FB898302|pid:none) Sequence 117575 from Patent WO2008... 37 4.6
AF083687_1(AF083687|pid:none) Arabidopsis thaliana clone sps111 ... 37 4.6
AF384051_1(AF384051|pid:none) Olea europaea expansin mRNA, parti... 36 5.9
DQ499635_1(DQ499635|pid:none) Vasconcellea cundinamarcensis expa... 36 5.9
AB104443_1(AB104443|pid:none) Vitis labrusca x Vitis vinifera Ve... 36 5.9
AB370116_1(AB370116|pid:none) Rosa hybrid cultivar RhEXPA1 mRNA ... 36 5.9
EF644230_1(EF644230|pid:none) Gossypium arboreum clone 2_4 alpha... 36 7.8
EF102108_1(EF102108|pid:none) Cunninghamia lanceolata expansin 1... 36 7.8
FB898498_1(FB898498|pid:none) Sequence 117771 from Patent WO2008... 36 7.8
FB898552_1(FB898552|pid:none) Sequence 117825 from Patent WO2008... 36 7.8
U93167_1(U93167|pid:none) Prunus armeniaca expansin (PA-Exp1) mR... 36 7.8
EF213105_1(EF213105|pid:none) Musa acuminata expansin A5 mRNA, p... 36 7.8
AM424542_4(AM424542|pid:none) Vitis vinifera contig VV78X158137.... 36 7.8
AF226704_1(AF226704|pid:none) Fragaria x ananassa expansin 7 (Ex... 36 7.8
CP000804_2251(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 36 7.8
AY500146_1(AY500146|pid:none) Craterostigma plantagineum expansi... 36 7.8

>(Q54PA4) RecName: Full=Expansin-like protein 2;
Short=Ddexpl2; Flags: Precursor;
Length = 407

Score = 42.4 bits (98), Expect(2) = 9e-06
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Frame = +1

Query: 1114 PLFMLTPDAFQEISSDPLSVVYDAGFRKVSCDASGPIKAQVSE-DSSKYYVKLLIFNNEV 1290
P L+P AF + V +KVSCD +G IKA + + ++ + + ++FN+ V
Sbjct: 107 PHLDLSPTAFNTTIGSTVGVAMTT-VKKVSCDVTGNIKAYMKDAATTNTWFEFMVFNHRV 165

Query: 1291 GIQSVTIKGKDMSAPVTMVRQGSAQFVWSQAGKEMMFPATRCGVITIWGQCYNDY 1455
GI S+++ +D +T + + + W+ G FP V +I+G + Y
Sbjct: 166 GIASISV--EDSKGTITSLPRRLYNY-WTYNGNAASFPVI-AHVYSIYGDQVDIY 216

Score = 32.7 bits (73), Expect(2) = 9e-06
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3

Query: 1002 YSSGVKCGDCFEVSGPKGKTVVRVVNFC-SAGTCPSERP 1115
Y+ CG+C+E+ GP G V +V+ C G C + P
Sbjct: 69 YNGSFACGECYEIYGPGGTGKVMIVDQCPDPGWCDTPFP 107

Score = 51.2 bits (121), Expect = 2e-04
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2

Query: 413 YSSGVKCGDCFEVSGPKGKTVVRVVNFC-SAGTCPSERPLFMLTPDAFQEISSDPLSVVY 589
Y+ CG+C+E+ GP G V +V+ C G C + P L+P AF + V
Sbjct: 69 YNGSFACGECYEIYGPGGTGKVMIVDQCPDPGWCDTPFPHLDLSPTAFNTTIGSTVGVAM 128

Query: 590 DAGFRKVSCDASGPIKA 640
+KVSCD +G IKA
Sbjct: 129 TT-VKKVSCDVTGNIKA 144

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,189,441,524
Number of extensions: 60152546
Number of successful extensions: 131519
Number of sequences better than 10.0: 116
Number of HSP's gapped: 130191
Number of HSP's successfully gapped: 203
Length of query: 836
Length of database: 1,040,966,779
Length adjustment: 137
Effective length of query: 699
Effective length of database: 601,979,734
Effective search space: 420783834066
Effective search space used: 420783834066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.95 gvh: 0.81 alm: 0.51 top: 0.47 tms: 0.00 mit: 0.35 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
8.0 %: vacuolar
8.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for Contig-U10879-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 2
CH (FL, L) 7
CF (FL, S) 11
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0