Contig-U10863-1
Contig ID Contig-U10863-1
Contig update 2002.12.18
Contig sequence
>Contig-U10863-1 (Contig-U10863-1Q) /CSM_Contig/Contig-U10863-1Q.Seq.d
AATGCAGCATTTAATGCATCGATTGCACCAACACCACCAGCGCCATTTTG
AGTGAAAACATATTGTGAAGCTCTTCTAGATGCACGAATTGCTTCACCAC
CTTTCATTTTACTCATTAATTGATCCATAAAAGTACCATTTTGTGGTATA
TCATCATCGTCGTCGCCATGGTGTTGTTGTTGTTGTTGCTGAACAGAAAT
TGATGGTTGAGTTGATTGTGGTGGTTTTTGTGAGATTGAAATTGAAGATT
TTGAAGTTGGAGTAATTGGAGAAACACCAGATTTTGGAGCGATATTAATT
GAAGAACCAGAAGCAGATGGCACAGATGGACCAGAAGCAGCAGCTTTCTT
TCTAGCGGCTAATTTTTGAACATTTTCTCTTTCCTTTTGAATTGATTCAA
TTGTACGTTTGAATTCATTTTTGAATTTTGAAACATGTTGGAAGAATTCT
TCAGGTGATGAAGTTTTAACATCTTCACCATAGAATTGTACGGTTGAATT
AAAGGATTCAAGGGCGGTATTAAATTGTTTTTCAATTAAAGTGACGGCAT
CTGTTGATTTACCAACGAAACCACTTAAAATTGTCTTTGAAGCACCTTCA
CTCTTTTCAACTTCATTAGTTAGCAATGTTAAACCTTTCTTTAATGAAGC
AACTTCTGAACGTAAATTTTGAATTGATACTCTCTTTGCCTCATCGATTG
CAGTAAACTCTTGATGGAATTCCAAAAGAGATGGATGTTTATTCTCCAAG
AATTGAATTAACCAAGTCATTAAGGTTACTTTTGAATCTGAAGGTGAACG
ACAATCCAATAGACCACTAAGAGAATCCAATTTGAAACCGTAAATATCAC
CACGTGGTGTACCACCATTAATGAAATTACCCAATGATAATACAATCTCT
AGAATTTGATGGAATGATTTATTATTTTTGGTTTCCATTGAACCTTTTAA
TAATGCGTTAATATCTGGTGTTAATTCTTCGATTTGAGTTGAAAGTTTTT
GTTTAAAGATAAAACATTCCAATTTCTCAGAGATTCTATTGATTTTACTA
AGTTCCCAAAGGAATTGTTGCTGGTTTACCAAAACATGATGGATCCTCTT
CTTTTAATAATTCAATTTCCTCTGAACTTGGTACAAATTTCAATAAAGAT
TT----------TTTTTGGATCTAAAATACTGATAGTTGGTGTTGATACT
ATTGATTTTGAACCACTACCACCACCAACTGCTACATTACTTGCACCACC
TACTGGAGCAGTTGGAGTAGTTGCAGTTGGTTTTTTTAACTTGGAATAAT
TCTTCAAGTTGTTTAAATTGATCATTCAAATTATAATCTTTAACATTCAT
CCAAATTGAATTTTCAATTACATTATTATTAACTTTTTTCCATTGAAGAC
CAACCATTTTAACAGATGGTACTGATGATTTTTTTGGTGGTAAATTTGGT
ACAGCTGGTGCACCTGGTTTTTTCATTCCACCTGGAGGTGGAGGTGGTGG
TGGTGGACCTCCTGATGATGGTGGTGGAGGTGGTGGTGGTGGACCTCCTC
CTGATGATGGTGGTGGTGGAGGTGGAGGTGGTGGTGGACCTCCTCCTGAA
ACTGGTGGAGCAGGTGGTGGTGGTGGTGGTGGTGGTGGGGCACCCAATGA
TGGTGATGATGGTGCTTCGATTGGTGGTGATGTAGTACCATTAGTATCTG
AAGGTGGTGTTGTAACACTAACA

Gap gap included
Contig length 1713
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5640130
End point 5638417
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 9
Link to clone list U10863
List of clone(s)

est1=AFF556F,1,1043
est2=CHA791F,1,622
est3=CHE273F,6,503
est4=CHD389E,40,1152
est5=VSF214F,118,690
est6=VSF214Z,295,648
est7=CHE273Z,834,1130
est8=CHA391Z,1153,1714
est9=AFF556Z,1162,1653
Translated Amino Acid sequence
csi*cidctnttsailsenil*sssrctncfttfhfth*lihkstilwyiiivvamvlll
lllnrn*wls*lwwfl*d*n*rf*swsnwrntrfwsdin*rtrsrwhrwtrsssflssg*
flnifsflln*fnctfefifef*nmleeffr**sfniftielyg*ikgfkggiklffn*s
dgic*ftnett*ncl*stftlfnfis*qc*tfl**snf*t*iln*yslclidcskllmef
qkrwmfilqeln*psh*gyf*i*r*ttiq*ttkriqfetvnittwcttineitq**ynl*
nlme*fiifgfh*tf**cvniwc*ffdls*KFLFKDKTFQFLRDSIDFTKFPKELLLVYQ
NMMDPLLLIIQFPLNLVQISIKI---

---FGSKILIVGVDTIDFEPLPPPTATLLAPPTGAVGVVAVGFFNLE*ffklfkliiqii
ifnihpn*ifnyiiinffplktnhfnrwy**ffww*iwyswctwffhstwrwrwwwwts*
*wwwrwwwwtss**wwwwrwrwwwtss*nwwsrwwwwwwwwgtq*w**wcfdww*cstis
i*rwccntn


Translated Amino Acid sequence (All Frames)
Frame A:
naafnasiaptppapf*vktycealldariasppfillin*sikvpfcgissssspwccc
ccc*teidg*vdcggfceieiedfevgvigetpdfgailieepeadgtdgpeaaafflaa
nf*tfslsf*idsivrlnsflnfetcwknssgdevltssp*nctvelkdsravlncfsik
vtasvdlptkplkivfeapslfstslvsnvkpffneatserkf*idtlfassiavns*wn
skrdgclfskn*inqvikvtfesegerqsnrplresnlkp*isprgvpplmklpndntis
ri*wndllflvsiepfnnalisgvnssi*vesfclkikhsnfseillillssqrnccwft
kt*wilff**fnfl*twykfq*rf---

---fldlky**lvlillilnhyhhqllhylhhlleqle*lqlvfltwnnssscln*sfkl
*sltfiqiefsitllltffh*rptiltdgtddffggkfgtagapgffippggggggggpp
ddggggggggpppddggggggggggpppetggagggggggggapndgddgasiggdvvpl
vseggvvtlt

Frame B:
mqhlmhrlhqhhqrhfe*khivklf*mhellhhlsfyslidp*kyhfvvyhhrrrhgvvv
vvaeqklmvelivvvfvrlklkilkle*lekhqilery*lknqkqmaqmdqkqqlsf*rl
ifehflfpfeliqlyv*ihf*ilkhvgrilqvmkf*hlhhrivrln*riqgry*ivfqlk
*rhlliyqrnhlklslkhlhsfqlh*lamlnlslmkqllnvnfelilslphrlq*tldgi
pkemdvysprieltkslrlllnlkvndnpidh*enpi*nrkyhhvvyhh**nypmiiqsl
efdgmiyyfwfplnllimr*ylvlilrfelkvfv*r*nipisqrfy*fy*vpkgivaglp
khdgsssfnnsisselgtnfnkd---

---fwi*ntdswc*yy*f*tttttncyitcttywsswsscswff*lgiilqvv*idhsny
nl*hssklnfqlhyy*lfsiedqpf*qmvlmiflvvnlvqlvhlvfsfhlevevvvvdll
mmvvevvvvdlllmmvvvevevvvdlllklveqvvvvvvvvghpmmvmmvlrlvvm*yh*
ylkvvl*h*

Frame C:
csi*cidctnttsailsenil*sssrctncfttfhfth*lihkstilwyiiivvamvlll
lllnrn*wls*lwwfl*d*n*rf*swsnwrntrfwsdin*rtrsrwhrwtrsssflssg*
flnifsflln*fnctfefifef*nmleeffr**sfniftielyg*ikgfkggiklffn*s
dgic*ftnett*ncl*stftlfnfis*qc*tfl**snf*t*iln*yslclidcskllmef
qkrwmfilqeln*psh*gyf*i*r*ttiq*ttkriqfetvnittwcttineitq**ynl*
nlme*fiifgfh*tf**cvniwc*ffdls*KFLFKDKTFQFLRDSIDFTKFPKELLLVYQ
NMMDPLLLIIQFPLNLVQISIKI---

---FGSKILIVGVDTIDFEPLPPPTATLLAPPTGAVGVVAVGFFNLE*ffklfkliiqii
ifnihpn*ifnyiiinffplktnhfnrwy**ffww*iwyswctwffhstwrwrwwwwts*
*wwwrwwwwtss**wwwwrwrwwwtss*nwwsrwwwwwwwwgtq*w**wcfdww*cstis
i*rwccntn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10863-1 (Contig-U10863-1Q)
/CSM_Contig/Contig-U10863-1Q.Seq.d
(1723 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10863-1 (Contig-U10863-1Q) /CSM_Contig/Conti... 2454 0.0
Contig-U08455-1 (Contig-U08455-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U13158-1 (Contig-U13158-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12945-1 (Contig-U12945-1Q) /CSM_Contig/Conti... 38 0.031
Contig-U11177-1 (Contig-U11177-1Q) /CSM_Contig/Conti... 38 0.031
Contig-U11049-1 (Contig-U11049-1Q) /CSM_Contig/Conti... 38 0.031
Contig-U10156-1 (Contig-U10156-1Q) /CSM_Contig/Conti... 38 0.031
Contig-U13516-1 (Contig-U13516-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U13199-1 (Contig-U13199-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U00957-1 (Contig-U00957-1Q) /CSM_Contig/Conti... 36 0.12

>Contig-U10863-1 (Contig-U10863-1Q) /CSM_Contig/Contig-U10863-1Q.Seq.d
Length = 1723

Score = 2454 bits (1238), Expect = 0.0
Identities = 1296/1310 (98%)
Strand = Plus / Plus


Query: 189 ctgaacagaaattgatggttgagttgattgtggtggtttttgtgagattgaaattgaaga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctgaacagaaattgatggttgagttgattgtggtggtttttgtgagattgaaattgaaga 248


Query: 249 ttttgaagttggagtaattggagaaacaccagattttggagcgatattaattgaagaacc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttttgaagttggagtaattggagaaacaccagattttggagcgatattaattgaagaacc 308


Query: 309 agaagcagatggcacagatggaccagaagcagcagctttctttctagcggctaatttttg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agaagcagatggcacagatggaccagaagcagcagctttctttctagcggctaatttttg 368


Query: 369 aacattttctctttccttttgaattgattcaattgtacgtttgaattcatttttgaattt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aacattttctctttccttttgaattgattcaattgtacgtttgaattcatttttgaattt 428


Query: 429 tgaaacatgttggaagaattcttcaggtgatgaagttttaacatcttcaccatagaattg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgaaacatgttggaagaattcttcaggtgatgaagttttaacatcttcaccatagaattg 488


Query: 489 tacggttgaattaaaggattcaagggcggtattaaattgtttttcaattaaagtgacggc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tacggttgaattaaaggattcaagggcggtattaaattgtttttcaattaaagtgacggc 548


Query: 549 atctgttgatttaccaacgaaaccacttaaaattgtctttgaagcaccttcactcttttc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atctgttgatttaccaacgaaaccacttaaaattgtctttgaagcaccttcactcttttc 608


Query: 609 aacttcattagttagcaatgttaaacctttctttaatgaagcaacttctgaacgtaaatt 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aacttcattagttagcaatgttaaacctttctttaatgaagcaacttctgaacgtaaatt 668


Query: 669 ttgaattgatactctctttgcctcatcgattgcagtaaactcttgatggaattccaaaag 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttgaattgatactctctttgcctcatcgattgcagtaaactcttgatggaattccaaaag 728


Query: 729 agatggatgtttattctccaagaattgaattaaccaagtcattaaggttacttttgaatc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agatggatgtttattctccaagaattgaattaaccaagtcattaaggttacttttgaatc 788


Query: 789 tgaaggtgaacgacaatccaatagaccactaagagaatccaatttgaaaccgtaaatatc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tgaaggtgaacgacaatccaatagaccactaagagaatccaatttgaaaccgtaaatatc 848


Query: 849 accacgtggtgtaccaccattaatgaaattacccaatgataatacaatctctagaatttg 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 accacgtggtgtaccaccattaatgaaattacccaatgataatacaatctctagaatttg 908


Query: 909 atggaatgatttattatttttggtttccattgaaccttttaataatgcgttaatatctgg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 atggaatgatttattatttttggtttccattgaaccttttaataatgcgttaatatctgg 968


Query: 969 tgttaattcttcgatttgagttgaaagtttttgtttaaagataaaacattccaatttctc 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 tgttaattcttcgatttgagttgaaagtttttgtttaaagataaaacattccaatttctc 1028


Query: 1029 agagattctattgattttactaagttcccaaaggaattgttgctggtttaccaaaacatg 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 agagattctattgattttactaagttcccaaaggaattgttgctggtttaccaaaacatg 1088


Query: 1089 atggatcctcttcttttaataattcaatttcctctgaacttggtacaaatttcaataaag 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 atggatcctcttcttttaataattcaatttcctctgaacttggtacaaatttcaataaag 1148


Query: 1149 atttnnnnnnnnnntttttggatctaaaatactgatagttggtgttgatactattgattt 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 atttnnnnnnnnnntttttggatctaaaatactgatagttggtgttgatactattgattt 1208


Query: 1209 tgaaccactaccaccaccaactgctacattacttgcaccacctactggagcagttggagt 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 tgaaccactaccaccaccaactgctacattacttgcaccacctactggagcagttggagt 1268


Query: 1269 agttgcagttggnnnnnnnaacttggaataattcttcaagttgtttaaattgatcattca 1328
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 agttgcagttggtttttttaacttggaataattcttcaagttgtttaaattgatcattca 1328


Query: 1329 aattataatctttaacattcatccaaattgaattttcaattacattattattaacttttt 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 aattataatctttaacattcatccaaattgaattttcaattacattattattaacttttt 1388


Query: 1389 tccattgaagaccaaccattttaacagatggtactgatgannnnnnnggtggtaaatttg 1448
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1389 tccattgaagaccaaccattttaacagatggtactgatgatttttttggtggtaaatttg 1448


Query: 1449 gtacagctggtgcacctggttttttcattccacctggaggtggaggtggt 1498
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 gtacagctggtgcacctggttttttcattccacctggaggtggaggtggt 1498


Score = 339 bits (171), Expect = 6e-93
Identities = 171/171 (100%)
Strand = Plus / Plus


Query: 1 aatgcagcatttaatgcatcgattgcaccaacaccaccagcgccattttgagtgaaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgcagcatttaatgcatcgattgcaccaacaccaccagcgccattttgagtgaaaaca 60


Query: 61 tattgtgaagctcttctagatgcacgaattgcttcaccacctttcattttactcattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattgtgaagctcttctagatgcacgaattgcttcaccacctttcattttactcattaat 120


Query: 121 tgatccataaaagtaccattttgtggtatatcatcatcgtcgtcgccatgg 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatccataaaagtaccattttgtggtatatcatcatcgtcgtcgccatgg 171


Score = 168 bits (85), Expect = 1e-41
Identities = 85/85 (100%)
Strand = Plus / Plus


Query: 1639 ggcacccaatgatggtgatgatggtgcttcgattggtggtgatgtagtaccattagtatc 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1639 ggcacccaatgatggtgatgatggtgcttcgattggtggtgatgtagtaccattagtatc 1698


Query: 1699 tgaaggtggtgttgtaacactaaca 1723
|||||||||||||||||||||||||
Sbjct: 1699 tgaaggtggtgttgtaacactaaca 1723


Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1483 tggaggtggaggtggt 1498
||||||||||||||||
Sbjct: 1567 tggaggtggaggtggt 1582


>Contig-U08455-1 (Contig-U08455-1Q) /CSM_Contig/Contig-U08455-1Q.Seq.d
Length = 591

Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus


Query: 1208 ttgaaccactaccaccaccaactg 1231
||||||||||||||||||||||||
Sbjct: 270 ttgaaccactaccaccaccaactg 247


Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1647 atgatggtgatgatg 1661
|||||||||||||||
Sbjct: 216 atgatggtgatgatg 202


>Contig-U13158-1 (Contig-U13158-1Q) /CSM_Contig/Contig-U13158-1Q.Seq.d
Length = 801

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1207 tttgaaccactaccaccacca 1227
|||||||||||||||||||||
Sbjct: 264 tttgaaccactaccaccacca 244


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,121
Number of Sequences: 6905
Number of extensions: 27121
Number of successful extensions: 3244
Number of sequences better than 10.0: 433
length of query: 1723
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1707
effective length of database: 5,564,391
effective search space: 9498415437
effective search space used: 9498415437
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U10863-1 (Contig-U10863-1Q) /CSM_Contig/Contig-U10863-1Q.Seq.d
(1723 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AB082543) Dictyostelium discoideum forB gene for formin hom... 1263 0.0 2
(AU033761) Dictyostelium discoideum slug cDNA, clone SLB408. 1124 0.0 1
(BJ363838) Dictyostelium discoideum cDNA clone:ddc28b23, 5' ... 944 0.0 2
(BJ376492) Dictyostelium discoideum cDNA clone:ddc28b23, 3' ... 527 0.0 3
(BJ396133) Dictyostelium discoideum cDNA clone:dds41a15, 5' ... 387 0.0 3
(BJ362858) Dictyostelium discoideum cDNA clone:ddc23f23, 5' ... 377 0.0 3
(BJ396459) Dictyostelium discoideum cDNA clone:dds42b06, 5' ... 371 0.0 4
(BJ323880) Dictyostelium discoideum cDNA clone:dda12o13, 5' ... 341 0.0 4
(AU264877) Dictyostelium discoideum vegetative cDNA clone:VS... 507 0.0 3
(BJ390309) Dictyostelium discoideum cDNA clone:dds21o20, 5' ... 341 0.0 3
(BJ364206) Dictyostelium discoideum cDNA clone:ddc30a20, 5' ... 341 0.0 3
(AU053370) Dictyostelium discoideum slug cDNA, clone SLI478. 341 0.0 2
(BJ377164) Dictyostelium discoideum cDNA clone:ddc22f23, 3' ... 280 e-170 4
(BJ340348) Dictyostelium discoideum cDNA clone:dda12o13, 3' ... 280 e-149 3
(BJ376950) Dictyostelium discoideum cDNA clone:ddc30a20, 3' ... 478 e-133 2
(AU264878) Dictyostelium discoideum vegetative cDNA clone:VS... 341 e-118 3
(BJ400743) Dictyostelium discoideum cDNA clone:dds14h17, 3' ... 327 8e-85 1
(AC104211) Homo sapiens chromosome 8, clone RP11-100L22, com... 42 0.003 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.026 17
(AJ812236) Dictyostelium discoideum mRNA for diaphanous-rela... 50 0.28 1
(ED633442) GM_WBa0036O11.f GM_WBa Glycine max genomic clone ... 50 0.28 1
(CR928979) Danio rerio EST sequence, clone 234-A11-2. 50 0.28 1
(BP920662) Adiantum capillus-veneris mRNA, clone: YMU001_000... 50 0.28 1
(I89446) Sequence 33 from patent US 5721352. 44 0.51 2
(I16693) Sequence 33 from patent US 5476781. 44 0.51 2
(AR214751) Sequence 33 from patent US 6410221. 44 0.51 2
(AC079431) Mus musculus chromosome 16 clone RP23-1J12, WORKI... 38 0.59 2
(AC127287) Mus musculus BAC clone RP23-345G7 from chromosome... 38 0.60 2
(M75889) Amsacta moorei entomopoxvirus spheroidin gene, comp... 44 0.60 2
(I89423) Sequence 1 from patent US 5721352. 44 0.85 2
(M77182) Amsacta entomopoxvirus spheroidin gene, complete cd... 44 1.0 2
(I16670) Sequence 1 from patent US 5476781. 44 1.0 2
(AR214728) Sequence 1 from patent US 6410221. 44 1.0 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 48 1.1 1
(AB082542) Dictyostelium discoideum forA mRNA for formin hom... 48 1.1 1
(C91378) Dictyostelium discoideum slug cDNA, clone SSK144. 48 1.1 1
(C23670) Dictyostelium discoideum gamete cDNA, clone FCL-AB11. 48 1.1 1
(BA000037) Vibrio vulnificus YJ016 DNA, chromosome I, comple... 48 1.1 1
(AE016795) Vibrio vulnificus CMCP6 chromosome I complete seq... 48 1.1 1
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 44 1.3 8
(AL691517) Human DNA sequence from clone XXyac-12DB5 on chro... 38 2.4 3
(FH460705) CHO_OF4934xk17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 3.0 2
(BD460306) Diagnosis of Diseases Associated with Cell Cycle. 42 3.0 2
(BD452228) Diagnosis of Diseases Associated with Cell Cycle. 42 3.0 2
(AX348967) Sequence 425 from Patent WO0202807. 42 3.0 2
(AX344644) Sequence 69 from Patent WO0200927. 42 3.0 2
(AX344228) Sequence 75 from Patent WO0200926. 42 3.0 2
(AX251842) Sequence 103 from Patent WO0168911. 42 3.0 2
(AX392736) Sequence 26 from Patent WO0212526. 44 3.4 3
(AR707083) Sequence 26 from patent US 6933145. 44 3.4 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 3.6 16
(AC188668) Pan troglodytes BAC clone CH251-162B7 from chromo... 44 3.6 2
(BX284692) Zebrafish DNA sequence from clone CH211-282O22 in... 46 4.4 1
(AM180579) Arabidopsis cebennensis mamc gene for methylthioa... 46 4.4 1
(AC158879) Bos taurus clone CH240-18C21, *** SEQUENCING IN P... 46 4.4 1
(AC115338) Rattus norvegicus clone CH230-100B7, *** SEQUENCI... 46 4.4 1
(AC098290) Rattus norvegicus clone CH230-1K15, *** SEQUENCIN... 46 4.4 1
(AC223287) Bos taurus clone CH240-423H10, WORKING DRAFT SEQU... 46 4.4 1
(AC218709) Bos taurus clone CH240-296D21, WORKING DRAFT SEQU... 46 4.4 1
(AC180181) Strongylocentrotus purpuratus clone R3-4001J24, W... 46 4.4 1
(AC178782) Strongylocentrotus purpuratus clone R3-2A5, WORKI... 46 4.4 1
(AC167499) Bos taurus clone CH240-193L15, WORKING DRAFT SEQU... 46 4.4 1
(FH976361) CHO_OF6820xj07f1.ab1 CHO_OF6 Nicotiana tabacum ge... 46 4.4 1
(FH747267) CHO_OF5210xh19f1.ab1 CHO_OF5 Nicotiana tabacum ge... 46 4.4 1
(DH232797) Oryzias latipes Fosmid clone:GOLWFno501_o20, reve... 46 4.4 1
(DH102014) Oryzias latipes Fosmid clone:GOLWFno348_n04, forw... 46 4.4 1
(CW856685) sh2ad4-43.g_040.ab1 Whole-genome shotgun library ... 46 4.4 1
(CC919424) t021m13ba.f1 TAMBT Bos taurus genomic clone t021m... 46 4.4 1
(CP000716) Thermosipho melanesiensis BI429, complete genome. 46 4.4 1
(AC146484) Pan troglodytes BAC clone CH251-454A18 from Y, co... 44 4.8 2
(AX602207) Sequence 136 from Patent WO02092818. 38 5.2 4
(AL766850) Streptococcus agalactiae NEM316 complete genome, ... 38 7.0 6
(BJ387887) Dictyostelium discoideum cDNA clone:dds5k18, 5' e... 32 9.0 3
(BP219032) Homo sapiens cDNA clone: CNR06617, Sugano cDNA li... 36 9.1 3
(AC196282) Pan troglodytes chromosome 7 clone CH251-503P6, W... 44 9.5 3
(AM440561) Vitis vinifera contig VV78X272865.9, whole genome... 42 10.0 2

>(AB082543) Dictyostelium discoideum forB gene for formin homology
protein B, complete cds.
Length = 3726

Score = 1263 bits (637), Expect(2) = 0.0
Identities = 637/637 (100%)
Strand = Plus / Minus


Query: 433 acatgttggaagaattcttcaggtgatgaagttttaacatcttcaccatagaattgtacg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3107 acatgttggaagaattcttcaggtgatgaagttttaacatcttcaccatagaattgtacg 3048


Query: 493 gttgaattaaaggattcaagggcggtattaaattgtttttcaattaaagtgacggcatct 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3047 gttgaattaaaggattcaagggcggtattaaattgtttttcaattaaagtgacggcatct 2988


Query: 553 gttgatttaccaacgaaaccacttaaaattgtctttgaagcaccttcactcttttcaact 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2987 gttgatttaccaacgaaaccacttaaaattgtctttgaagcaccttcactcttttcaact 2928


Query: 613 tcattagttagcaatgttaaacctttctttaatgaagcaacttctgaacgtaaattttga 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2927 tcattagttagcaatgttaaacctttctttaatgaagcaacttctgaacgtaaattttga 2868


Query: 673 attgatactctctttgcctcatcgattgcagtaaactcttgatggaattccaaaagagat 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2867 attgatactctctttgcctcatcgattgcagtaaactcttgatggaattccaaaagagat 2808


Query: 733 ggatgtttattctccaagaattgaattaaccaagtcattaaggttacttttgaatctgaa 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2807 ggatgtttattctccaagaattgaattaaccaagtcattaaggttacttttgaatctgaa 2748


Query: 793 ggtgaacgacaatccaatagaccactaagagaatccaatttgaaaccgtaaatatcacca 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2747 ggtgaacgacaatccaatagaccactaagagaatccaatttgaaaccgtaaatatcacca 2688


Query: 853 cgtggtgtaccaccattaatgaaattacccaatgataatacaatctctagaatttgatgg 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2687 cgtggtgtaccaccattaatgaaattacccaatgataatacaatctctagaatttgatgg 2628


Query: 913 aatgatttattatttttggtttccattgaaccttttaataatgcgttaatatctggtgtt 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2627 aatgatttattatttttggtttccattgaaccttttaataatgcgttaatatctggtgtt 2568


Query: 973 aattcttcgatttgagttgaaagtttttgtttaaagataaaacattccaatttctcagag 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2567 aattcttcgatttgagttgaaagtttttgtttaaagataaaacattccaatttctcagag 2508


Query: 1033 attctattgattttactaagttcccaaaggaattgtt 1069
|||||||||||||||||||||||||||||||||||||
Sbjct: 2507 attctattgattttactaagttcccaaaggaattgtt 2471

Score = 341 bits (172), Expect(6) = 0.0
Identities = 172/172 (100%)
Strand = Plus / Minus


Query: 189 ctgaacagaaattgatggttgagttgattgtggtggtttttgtgagattgaaattgaaga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3351 ctgaacagaaattgatggttgagttgattgtggtggtttttgtgagattgaaattgaaga 3292


Query: 249 ttttgaagttggagtaattggagaaacaccagattttggagcgatattaattgaagaacc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3291 ttttgaagttggagtaattggagaaacaccagattttggagcgatattaattgaagaacc 3232


Query: 309 agaagcagatggcacagatggaccagaagcagcagctttctttctagcggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3231 agaagcagatggcacagatggaccagaagcagcagctttctttctagcggct 3180

Score = 339 bits (171), Expect(6) = 0.0
Identities = 171/171 (100%)
Strand = Plus / Minus


Query: 1 aatgcagcatttaatgcatcgattgcaccaacaccaccagcgccattttgagtgaaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3539 aatgcagcatttaatgcatcgattgcaccaacaccaccagcgccattttgagtgaaaaca 3480


Query: 61 tattgtgaagctcttctagatgcacgaattgcttcaccacctttcattttactcattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3479 tattgtgaagctcttctagatgcacgaattgcttcaccacctttcattttactcattaat 3420


Query: 121 tgatccataaaagtaccattttgtggtatatcatcatcgtcgtcgccatgg 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3419 tgatccataaaagtaccattttgtggtatatcatcatcgtcgtcgccatgg 3369

Score = 280 bits (141), Expect(6) = 0.0
Identities = 141/141 (100%)
Strand = Plus / Minus


Query: 1288 aacttggaataattcttcaagttgtttaaattgatcattcaaattataatctttaacatt 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 aacttggaataattcttcaagttgtttaaattgatcattcaaattataatctttaacatt 2098


Query: 1348 catccaaattgaattttcaattacattattattaacttttttccattgaagaccaaccat 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 catccaaattgaattttcaattacattattattaacttttttccattgaagaccaaccat 2038


Query: 1408 tttaacagatggtactgatga 1428
|||||||||||||||||||||
Sbjct: 2037 tttaacagatggtactgatga 2017

Score = 234 bits (118), Expect(6) = 0.0
Identities = 118/118 (100%)
Strand = Plus / Minus


Query: 1163 tttttggatctaaaatactgatagttggtgttgatactattgattttgaaccactaccac 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 tttttggatctaaaatactgatagttggtgttgatactattgattttgaaccactaccac 2222


Query: 1223 caccaactgctacattacttgcaccacctactggagcagttggagtagttgcagttgg 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 caccaactgctacattacttgcaccacctactggagcagttggagtagttgcagttgg 2164

Score = 163 bits (82), Expect(2) = 0.0
Identities = 82/82 (100%)
Strand = Plus / Minus


Query: 1071 ctggtttaccaaaacatgatggatcctcttcttttaataattcaatttcctctgaacttg 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2470 ctggtttaccaaaacatgatggatcctcttcttttaataattcaatttcctctgaacttg 2411


Query: 1131 gtacaaatttcaataaagattt 1152
||||||||||||||||||||||
Sbjct: 2410 gtacaaatttcaataaagattt 2389

Score = 93.7 bits (47), Expect(6) = 0.0
Identities = 47/47 (100%)
Strand = Plus / Minus


Query: 1436 ggtggtaaatttggtacagctggtgcacctggttttttcattccacc 1482
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 ggtggtaaatttggtacagctggtgcacctggttttttcattccacc 1963

Score = 81.8 bits (41), Expect(6) = 0.0
Identities = 41/41 (100%)
Strand = Plus / Minus


Query: 1683 tagtaccattagtatctgaaggtggtgttgtaacactaaca 1723
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 tagtaccattagtatctgaaggtggtgttgtaacactaaca 1722

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,715,968,112
Number of extensions: 101853219
Number of successful extensions: 8404154
Number of sequences better than 10.0: 77
Length of query: 1723
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1699
Effective length of database: 97,308,875,965
Effective search space: 165327780264535
Effective search space used: 165327780264535
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10863-1 (Contig-U10863-1Q) /CSM_Contig/Contig-U10863-1Q.Seq.d
(1723 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AB082543_1(AB082543|pid:none) Dictyostelium discoideum forB gene... 554 0.0
(Q54SP2) RecName: Full=Formin-B; 554 0.0
BC073482_1(BC073482|pid:none) Xenopus laevis hypothetical protei... 143 1e-33
AF056116_14(AF056116|pid:none) Fugu rubripes serine/threonine ki... 146 2e-33
BX324141_1(BX324141|pid:none) Zebrafish DNA sequence from clone ... 145 4e-33
BC163491_1(BC163491|pid:none) Danio rerio dishevelled associated... 145 4e-33
(Q9Y4D1) RecName: Full=Disheveled-associated activator of morpho... 141 4e-33
BC076585_1(BC076585|pid:none) Mus musculus dishevelled associate... 141 6e-33
(Q8BPM0) RecName: Full=Disheveled-associated activator of morpho... 141 6e-33
BC133280_1(BC133280|pid:none) Bos taurus dishevelled associated ... 140 1e-32
AK021890_1(AK021890|pid:none) Homo sapiens cDNA FLJ11828 fis, cl... 143 2e-32
AJ851584_1(AJ851584|pid:none) Gallus gallus mRNA for hypothetica... 142 3e-32
(Q9JL26) RecName: Full=Formin-like protein 1; AltName: Full=Form... 138 7e-31
AK131173_1(AK131173|pid:none) Mus musculus mRNA for mFLJ00304 pr... 138 7e-31
AL662804_6(AL662804|pid:none) Mouse DNA sequence from clone RP23... 138 7e-31
AB002379_1(AB002379|pid:none) Homo sapiens mRNA for KIAA0381 pro... 134 9e-31
AE014296_2497(AE014296|pid:none) Drosophila melanogaster chromos... 137 1e-30
(Q9VUC6) RecName: Full=Formin-like protein CG32138; &AE014296_2... 137 1e-30
EU831906_1(EU831906|pid:none) Synthetic construct Homo sapiens c... 133 2e-30
CR925815_2(CR925815|pid:none) Zebrafish DNA sequence from clone ... 136 2e-30
CR925815_3(CR925815|pid:none) Zebrafish DNA sequence from clone ... 136 2e-30
AK122266_1(AK122266|pid:none) Mus musculus premature mRNA for mK... 132 3e-30
(Q6ZPF4) RecName: Full=Formin-like protein 3; &AK155331_1(AK155... 135 5e-30
AK170744_1(AK170744|pid:none) Mus musculus NOD-derived CD11c +ve... 135 5e-30
AJ008112_1(AJ008112|pid:none) Homo sapiens mRNA for C17orf1 prot... 135 6e-30
BC073988_1(BC073988|pid:none) Homo sapiens formin-like 1, mRNA (... 135 6e-30
(Q8IVF7) RecName: Full=Formin-like protein 3; AltName: Full=Form... 133 2e-29
AB095934_1(AB095934|pid:none) Homo sapiens mRNA for KIAA2014 pro... 133 2e-29
AK127200_1(AK127200|pid:none) Homo sapiens cDNA FLJ45265 fis, cl... 133 2e-29
AL162062_1(AL162062|pid:none) Homo sapiens mRNA; cDNA DKFZp762B2... 133 2e-29
BC033181_1(BC033181|pid:none) Homo sapiens formin-like 3, mRNA (... 133 2e-29
AB384661_1(AB384661|pid:none) Synthetic construct DNA, clone: pF... 133 2e-29
AB244756_1(AB244756|pid:none) Homo sapiens diap3 mRNA for mammal... 129 4e-28
AL354829_4(AL354829|pid:none) Human DNA sequence from clone RP11... 129 4e-28
BC048963_1(BC048963|pid:none) Homo sapiens diaphanous homolog 3 ... 129 4e-28
AB244757_1(AB244757|pid:none) Homo sapiens diap3 mRNA for mammal... 129 4e-28
BC034952_1(BC034952|pid:none) Homo sapiens diaphanous homolog 3 ... 129 4e-28
(Q3ZK23) RecName: Full=Protein diaphanous homolog 3; AltName: Fu... 129 4e-28
AL354829_5(AL354829|pid:none) Human DNA sequence from clone RP11... 129 4e-28
BC168411_1(BC168411|pid:none) Synthetic construct Mus musculus c... 128 6e-28
AB385514_1(AB385514|pid:none) Synthetic construct DNA, clone: pF... 128 6e-28
(Q96PY5) RecName: Full=Formin-like protein 2; AltName: Full=Form... 128 6e-28
AK131316_1(AK131316|pid:none) Homo sapiens cDNA FLJ16308 fis, cl... 128 6e-28
AF513716_1(AF513716|pid:none) Mus musculus MAN mRNA, complete cds. 128 6e-28
AL845170_2(AL845170|pid:none) Mouse DNA sequence from clone RP23... 128 6e-28
AK094865_1(AK094865|pid:none) Homo sapiens cDNA FLJ37546 fis, cl... 128 6e-28
BC048004_1(BC048004|pid:none) Mus musculus formin-like 2, mRNA (... 128 6e-28
BC167804_1(BC167804|pid:none) Synthetic construct Homo sapiens c... 128 6e-28
(A2APV2) RecName: Full=Formin-like protein 2; AltName: Full=Prot... 128 6e-28
(Q9C6S1) RecName: Full=Formin-like protein 14; Short=At... 122 2e-27
BC007411_1(BC007411|pid:none) Homo sapiens diaphanous homolog 1 ... 126 3e-27
BC117257_1(BC117257|pid:none) Homo sapiens diaphanous homolog 1 ... 126 3e-27
AB209482_1(AB209482|pid:none) Homo sapiens mRNA for Diaphanous 1... 126 3e-27
DQ067453_1(DQ067453|pid:none) Homo sapiens diaphanous-1 (DIAPH1)... 126 3e-27
(O60610) RecName: Full=Protein diaphanous homolog 1; AltName: Fu... 126 3e-27
AL834396_1(AL834396|pid:none) Homo sapiens mRNA; cDNA DKFZp761P0... 126 3e-27
AY363395_1(AY363395|pid:none) Homo sapiens diaphanous 1 mRNA, co... 126 3e-27
(O08808) RecName: Full=Protein diaphanous homolog 1; AltName: Fu... 126 3e-27
AK156391_1(AK156391|pid:none) Mus musculus activated spleen cDNA... 126 3e-27
AP008216_57(AP008216|pid:none) Oryza sativa (japonica cultivar-g... 120 4e-27
AK161737_1(AK161737|pid:none) Mus musculus adult male thymus cDN... 124 8e-27
BC085191_1(BC085191|pid:none) Mus musculus diaphanous homolog 3 ... 124 8e-27
AK298509_1(AK298509|pid:none) Homo sapiens cDNA FLJ58109 partial... 124 1e-26
AE014298_186(AE014298|pid:none) Drosophila melanogaster chromoso... 120 2e-26
AE014298_187(AE014298|pid:none) Drosophila melanogaster chromoso... 120 2e-26
AB168412_1(AB168412|pid:none) Macaca fascicularis testis cDNA cl... 123 2e-26
(Q5TJ57) RecName: Full=Formin-E; AltName: Full=Diaphanous-relate... 122 4e-26
AY118439_1(AY118439|pid:none) Drosophila melanogaster RH61354 fu... 119 4e-26
(Q54WH2) RecName: Full=Formin-A; 122 5e-26
AB082542_1(AB082542|pid:none) Dictyostelium discoideum forA mRNA... 122 5e-26
BC082512_1(BC082512|pid:none) Xenopus tropicalis fmnl1 protein, ... 122 5e-26
(Q9LVN1) RecName: Full=Formin-like protein 13; Short=At... 117 6e-26
(Q54N00) RecName: Full=Formin-H; AltName: Full=Diaphanous-relate... 115 6e-26
(P0C5K5) RecName: Full=Formin-like protein 21b; Short=A... 118 1e-25
BC027845_1(BC027845|pid:none) Mus musculus formin-like 3, mRNA (... 120 1e-25
(Q9SK28) RecName: Full=Formin-like protein 18; Short=At... 117 1e-25
FN357391_19(FN357391|pid:none) Schistosoma mansoni genome sequen... 120 2e-25
AB010070_20(AB010070|pid:none) Arabidopsis thaliana genomic DNA,... 116 4e-25
(Q6ZCX3) RecName: Full=Formin-like protein 6; AltName: Full=OsFH6; 114 5e-25
AP003936_5(AP003936|pid:none) Oryza sativa Japonica Group genomi... 114 5e-25
AP004094_7(AP004094|pid:none) Oryza sativa Japonica Group genomi... 113 1e-24
AC079041_19(AC079041|pid:none) Arabidopsis thaliana chromosome 1... 115 5e-24
DQ977371_2(DQ977371|pid:none) Pan troglodytes FMNL2 (FMNL2) gene... 115 5e-24
AB170379_1(AB170379|pid:none) Macaca fascicularis brain cDNA clo... 115 5e-24
AC122160_11(AC122160|pid:none) Medicago truncatula clone mth2-23... 114 1e-23
(Q84ZL0) RecName: Full=Formin-like protein 5; AltName: Full=OsFH5; 108 2e-23
AP008213_1503(AP008213|pid:none) Oryza sativa (japonica cultivar... 108 2e-23
AC024798_8(AC024798|pid:none) Caenorhabditis elegans cosmid Y48G... 112 3e-23
BC143838_1(BC143838|pid:none) Homo sapiens diaphanous homolog 2 ... 112 3e-23
AL031053_2(AL031053|pid:none) Human DNA sequence from clone RP1-... 112 3e-23
AL031640_2(AL031640|pid:none) Drosophila melanogaster cosmid clo... 108 5e-23
BT021242_1(BT021242|pid:none) Drosophila melanogaster RE67944 fu... 107 7e-23
AK002029_1(AK002029|pid:none) Homo sapiens cDNA FLJ11167 fis, cl... 111 7e-23
AB171860_1(AB171860|pid:none) Macaca fascicularis brain cDNA clo... 110 2e-22
(P48608) RecName: Full=Protein diaphanous; &AE014134_3382(AE014... 102 6e-20
AC169120_1(AC169120|pid:none) Medicago truncatula clone mth2-84o... 101 7e-20
AC159537_10(AC159537|pid:none) Medicago truncatula clone mth2-18... 101 7e-20
AF238235_1(AF238235|pid:none) Entamoeba histolytica diaphanous p... 100 2e-19
AB005249_1(AB005249|pid:none) Arabidopsis thaliana genomic DNA, ... 99 4e-19
FN179407_1(FN179407|pid:none) Schistosoma mansoni SmDia gene for... 99 6e-19
FN357518_4(FN357518|pid:none) Schistosoma mansoni genome sequenc... 99 6e-19
(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-relate... 98 8e-19
AP008210_319(AP008210|pid:none) Oryza sativa (japonica cultivar-... 92 2e-18
CR855232_6(CR855232|pid:none) Oryza sativa genomic DNA, chromoso... 92 2e-18
AL662989_5(AL662989|pid:none) Oryza sativa genomic DNA, chromoso... 92 2e-18
(O70566) RecName: Full=Protein diaphanous homolog 2; AltName: Fu... 97 2e-18
AK088648_1(AK088648|pid:none) Mus musculus 2 days neonate thymus... 97 2e-18
AL683856_2(AL683856|pid:none) Mouse DNA sequence from clone RP23... 97 2e-18
AL137718_1(AL137718|pid:none) Homo sapiens mRNA; cDNA DKFZp434C0... 95 7e-18
(Q6ZM86) RecName: Full=Delphilin; AltName: Full=Glutamate recept... 95 7e-18
AB061681_1(AB061681|pid:none) Drosophila melanogaster ah1644 mRN... 95 9e-18
AE014296_1255(AE014296|pid:none) Drosophila melanogaster chromos... 95 9e-18
BT003619_1(BT003619|pid:none) Drosophila melanogaster GH12052 fu... 95 9e-18
AB010070_18(AB010070|pid:none) Arabidopsis thaliana genomic DNA,... 92 6e-17
(Q1ZXK2) RecName: Full=Formin-G; 89 4e-16
FN357394_67(FN357394|pid:none) Schistosoma mansoni genome sequen... 89 6e-16
AB220161_1(AB220161|pid:none) Tetrahymena thermophila BNI2 mRNA ... 87 2e-15
(Q0GNC1) RecName: Full=Inverted formin-2; &DQ834374_1(DQ834374|... 81 9e-15
BC115423_1(BC115423|pid:none) Mus musculus RIKEN cDNA 2610204M08... 81 9e-15
(Q05858) RecName: Full=Formin; AltName: Full=Limb deformity prot... 85 9e-15
A41724(S24286;S38780;A41724)limb deformity (ld) protein - chicken 85 9e-15
(Q27J81) RecName: Full=Inverted formin-2; AltName: Full=HBEBP2-b... 81 1e-14
AL672253_2(AL672253|pid:none) Mouse DNA sequence from clone RP23... 84 2e-14
(Q9C0D6) RecName: Full=FH2 domain-containing protein 1; 79 3e-14
AK153986_1(AK153986|pid:none) Mus musculus 2 days neonate thymus... 82 5e-14
BC099931_1(BC099931|pid:none) Mus musculus RIKEN cDNA 2610204M08... 81 6e-14
BC060610_1(BC060610|pid:none) Mus musculus RIKEN cDNA 2610204M08... 81 6e-14
AK093813_1(AK093813|pid:none) Homo sapiens cDNA FLJ36494 fis, cl... 75 3e-13
CR954206_154(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 79 4e-13
U40187_5(U40187|pid:none) Caenorhabditis elegans cosmid F11H8, c... 79 5e-13
AF062008_1(AF062008|pid:none) Caenorhabditis elegans cyk-1 mRNA,... 79 5e-13
U40187_4(U40187|pid:none) Caenorhabditis elegans cosmid F11H8, c... 79 5e-13
(O22824) RecName: Full=Formin-like protein 2; Short=AtF... 75 6e-13
(Q6NTV6) RecName: Full=Inverted formin-2; &BC068848_1(BC068848|... 78 9e-13
CP000587_105(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 78 1e-12
AE014134_713(AE014134|pid:none) Drosophila melanogaster chromoso... 77 2e-12
S11515(S11515) formin - mouse &X53599_1(X53599|pid:none) 77 2e-12
AE014134_715(AE014134|pid:none) Drosophila melanogaster chromoso... 77 2e-12
AE014134_719(AE014134|pid:none) Drosophila melanogaster chromoso... 77 2e-12
BT021476_1(BT021476|pid:none) Drosophila melanogaster AT04667 fu... 77 2e-12
AE014134_711(AE014134|pid:none) Drosophila melanogaster chromoso... 77 2e-12
AE014134_716(AE014134|pid:none) Drosophila melanogaster chromoso... 77 2e-12
AE014134_712(AE014134|pid:none) Drosophila melanogaster chromoso... 77 2e-12
(Q05860) RecName: Full=Formin-1; AltName: Full=Limb deformity pr... 77 2e-12
AK173244_1(AK173244|pid:none) Mus musculus mRNA for mKIAA1727 pr... 76 4e-12
BC008756_1(BC008756|pid:none) Homo sapiens inverted formin, FH2 ... 75 7e-12
(Q9SE97) RecName: Full=Formin-like protein 1; Short=AtF... 74 2e-11
(Q9JL04) RecName: Full=Formin-2; &BC094606_1(BC094606|pid:none) 71 1e-10
DQ472188_1(DQ472188|pid:none) Trypanosoma cruzi strain CL Brener... 71 1e-10
AF218940_1(AF218940|pid:none) Mus musculus formin-2 (Fmn2) mRNA,... 71 1e-10
AF106580_3(AF106580|pid:none) Caenorhabditis elegans cosmid F58B... 70 2e-10
(Q9NZ56) RecName: Full=Formin-2; &AL359918_1(AL359918|pid:none)... 70 2e-10
AK298141_1(AK298141|pid:none) Homo sapiens cDNA FLJ60748 complet... 70 2e-10
AK297716_1(AK297716|pid:none) Homo sapiens cDNA FLJ55858 complet... 70 2e-10
AF218942_1(AF218942|pid:none) Homo sapiens clone r56121 formin 2... 70 2e-10
AB209153_1(AB209153|pid:none) Homo sapiens mRNA for formin 2 var... 70 3e-10
AL844504_303(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 69 5e-10
(Q8S0F0) RecName: Full=Formin-like protein 1; AltName: Full=OsFH... 69 7e-10
CR391989_7(CR391989|pid:none) Zebrafish DNA sequence from clone ... 68 1e-09
AJ719683_1(AJ719683|pid:none) Gallus gallus mRNA for hypothetica... 67 3e-09
CR940353_507(CR940353|pid:none) Theileria annulata strain Ankara... 66 3e-09
BC060607_1(BC060607|pid:none) Mus musculus formin homology 2 dom... 66 4e-09
AB051482_1(AB051482|pid:none) Homo sapiens mRNA for KIAA1695 pro... 66 4e-09
EF577429_1(EF577429|pid:none) Trypanosoma brucei TREU927 formin ... 66 4e-09
BC081563_1(BC081563|pid:none) Homo sapiens formin homology 2 dom... 66 4e-09
(Q2V2M9) RecName: Full=FH1/FH2 domain-containing protein 3; AltN... 66 4e-09
(Q76LL6) RecName: Full=FH1/FH2 domain-containing protein 3; AltN... 66 4e-09
AB078609_1(AB078609|pid:none) Mus musculus FHOS2 mRNA for FHOS2S... 66 4e-09
BC050670_1(BC050670|pid:none) Homo sapiens formin homology 2 dom... 66 4e-09
AL834480_1(AL834480|pid:none) Homo sapiens mRNA; cDNA DKFZp762L0... 66 4e-09
BT072589_1(BT072589|pid:none) Salmo salar clone ssal-rgf-531-262... 65 6e-09
AK297755_1(AK297755|pid:none) Homo sapiens cDNA FLJ58678 complet... 65 8e-09
CP000586_129(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 65 8e-09
AE017350_233(AE017350|pid:none) Cryptococcus neoformans var. neo... 65 1e-08
FN392319_1528(FN392319|pid:none) Pichia pastoris GS115 chromosom... 64 1e-08
BC090338_1(BC090338|pid:none) Rattus norvegicus cDNA clone IMAGE... 64 2e-08
AE014188_184(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 63 3e-08
AC171534_6(AC171534|pid:none) Medicago truncatula chromosome 7 c... 60 3e-08
CR382137_781(CR382137|pid:none) Debaryomyces hansenii strain CBS... 62 5e-08
(Q0D519) RecName: Full=Formin-like protein 13; AltName: Full=OsF... 62 8e-08
FN392322_664(FN392322|pid:none) Pichia pastoris GS115 chromosome... 61 1e-07
DQ977230_3(DQ977230|pid:none) Pan paniscus FMNL2 (FMNL2) gene, p... 61 1e-07
BT034550_1(BT034550|pid:none) Zea mays full-length cDNA clone ZM... 61 1e-07
BT067466_1(BT067466|pid:none) Zea mays full-length cDNA clone ZM... 61 1e-07
DQ472189_1(DQ472189|pid:none) Trypanosoma cruzi strain CL Brener... 60 2e-07
DQ472191_1(DQ472191|pid:none) Trypanosoma cruzi strain CL Brener... 60 2e-07
FN357536_13(FN357536|pid:none) Schistosoma mansoni genome sequen... 60 3e-07
AB220160_1(AB220160|pid:none) Tetrahymena thermophila BNI1 mRNA ... 59 4e-07
BX294023_3(BX294023|pid:none) Neurospora crassa DNA linkage grou... 59 7e-07
AC144502_19(AC144502|pid:none) Medicago truncatula clone mth2-5p... 58 9e-07
CU928169_24(CU928169|pid:none) Kluyveromyces thermotolerans stra... 58 9e-07
EU954612_1(EU954612|pid:none) Zea mays clone 1473889 AFH1 mRNA, ... 58 9e-07
(O23373) RecName: Full=Formin-like protein 3; Short=AtF... 58 1e-06
AP003985_14(AP003985|pid:none) Oryza sativa Japonica Group genom... 58 1e-06
AM989980_87(AM989980|pid:none) Zygosaccharomyces rouxii strain C... 57 3e-06
CU928178_716(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 57 3e-06
CR382123_99(CR382123|pid:none) Kluyveromyces lactis strain NRRL ... 56 5e-06
BT054181_1(BT054181|pid:none) Zea mays full-length cDNA clone ZM... 56 5e-06
AM431362_2(AM431362|pid:none) Vitis vinifera contig VV78X080721.... 55 6e-06
AF213695_1(AF213695|pid:none) Nicotiana tabacum FH protein NFH1 ... 55 6e-06
AM441423_2(AM441423|pid:none) Vitis vinifera contig VV78X084678.... 54 1e-05
(P41832) RecName: Full=Protein BNI1; AltName: Full=Synthetic let... 54 2e-05
L31766_1(L31766|pid:none) Saccharomyces cerevisiae synthetic let... 54 2e-05
AP008208_2488(AP008208|pid:none) Oryza sativa (japonica cultivar... 54 2e-05
AP007164_41(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ... 53 3e-05
AM502242_77(AM502242|pid:none) Leishmania infantum chromosome 24. 53 3e-05
AM920427_434(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 53 3e-05
A71416(A71416) hypothetical protein - Arabidopsis thaliana &AL1... 53 4e-05
(P78621) RecName: Full=Cytokinesis protein sepA; AltName: Full=F... 53 4e-05
FJ826614_1(FJ826614|pid:none) Epichloe festucae strain E2368 Sep... 52 5e-05
BC125855_1(BC125855|pid:none) Danio rerio zgc:153126, mRNA (cDNA... 52 9e-05
CU928170_98(CU928170|pid:none) Kluyveromyces thermotolerans stra... 51 1e-04
AF113615_1(AF113615|pid:none) Homo sapiens FH1/FH2 domain-contai... 49 4e-04
CT005263_108(CT005263|pid:none) Leishmania major strain Friedlin... 49 7e-04
(Q6P9Q4) RecName: Full=FH1/FH2 domain-containing protein 1; AltN... 48 0.001
BC014364_1(BC014364|pid:none) Homo sapiens formin 2, mRNA (cDNA ... 48 0.001
AB041046_1(AB041046|pid:none) Homo sapiens mRNA for p127, comple... 48 0.001
AY192154_1(AY192154|pid:none) Homo sapiens FHOS mRNA, complete c... 48 0.001
(Q9Y613) RecName: Full=FH1/FH2 domain-containing protein 1; AltN... 48 0.001
AB209584_1(AB209584|pid:none) Homo sapiens mRNA for P127 variant... 48 0.001
(O04532) RecName: Full=Formin-like protein 8; Short=AtF... 47 0.002
(O94532) RecName: Full=Formin-3; &AL035247_5(AL035247|pid:none)... 47 0.002
(Q10719) RecName: Full=Cell fusion protein fus1; &CU329670_1989... 47 0.002
(Q9XIE0) RecName: Full=Formin-like protein 7; Short=AtF... 47 0.002
DQ977117_8(DQ977117|pid:none) Macaca nemestrina FMNL2 (FMNL2) ge... 45 0.011
(Q0DLG0) RecName: Full=Formin-like protein 14; AltName: Full=OsF... 44 0.014
Z78013_8(Z78013|pid:none) Caenorhabditis elegans Cosmid F15B9, c... 44 0.024
T20966(T20966)hypothetical protein F15B9.4 - Caenorhabditis eleg... 44 0.024
AP008207_3358(AP008207|pid:none) Oryza sativa (japonica cultivar... 42 0.053
AJ312390_1(AJ312390|pid:none) Mus musculus mRNA for nonmuscle he... 41 0.12
AK148323_1(AK148323|pid:none) Mus musculus B16 F10Y cells cDNA, ... 41 0.12
AK147211_1(AK147211|pid:none) Mus musculus 15 days embryo liver ... 41 0.12
BT065693_1(BT065693|pid:none) Zea mays full-length cDNA clone ZM... 41 0.15
(Q62812) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 41 0.15
FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo... 40 0.34
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 39 0.45
BX897699_732(BX897699|pid:none) Bartonella henselae strain Houst... 39 0.76
CP000253_1644(CP000253|pid:none) Staphylococcus aureus subsp. au... 37 2.9
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p... 37 2.9
AP009324_1625(AP009324|pid:none) Staphylococcus aureus subsp. au... 37 2.9
AJ298076_1(AJ298076|pid:none) Mus musculus partial Tpr gene for ... 37 2.9
AY526355_2(AY526355|pid:none) Cloning vector pBR-XJ160, complete... 37 2.9
AF339478_2(AF339478|pid:none) Kyzylagach virus strain LEIV 65A n... 37 2.9
AF398392_1(AF398392|pid:none) Kyzylagach virus glycoprotein (E1)... 37 2.9
U69668_1(U69668|pid:none) Human nuclear pore complex-associated ... 36 3.8
CP000990_3(CP000990|pid:none) Borrelia duttonii Ly plasmid pl70,... 36 3.8
CP001230_1698(CP001230|pid:none) Persephonella marina EX-H1, com... 36 3.8
U52576_1(U52576|pid:none) Highlands J virus envelope glycoprotei... 36 3.8
U52589_1(U52589|pid:none) Highlands J virus envelope glycoprotei... 36 3.8
AF339476_2(AF339476|pid:none) Highlands J virus strain B-230 non... 36 3.8
U52584_1(U52584|pid:none) Highlands J virus envelope glycoprotei... 36 3.8
U52580_1(U52580|pid:none) Highlands J virus envelope glycoprotei... 36 3.8
AE014186_23(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 36 5.0
X53947_1(X53947|pid:none) Yeast MYO1 gene for myosin heavy chain... 36 5.0
CP000510_306(CP000510|pid:none) Psychromonas ingrahamii 37, comp... 35 6.5
CP001072_1479(CP001072|pid:none) Helicobacter pylori Shi470, com... 35 6.5
AM180355_1070(AM180355|pid:none) Clostridium difficile 630 compl... 35 6.5
AF339477_2(AF339477|pid:none) Babanki virus strain DakAry 251 no... 35 6.5
U52581_1(U52581|pid:none) Highlands J virus envelope glycoprotei... 35 6.5
(P03316) RecName: Full=Structural polyprotein; AltName: Full=p13... 35 6.5
AF192888_1(AF192888|pid:none) Sindbis virus isolate B448 structu... 35 6.5
(P27285) RecName: Full=Structural polyprotein; AltName: Full=p13... 35 6.5
U38304_2(U38304|pid:none) Sindbis-like virus isolate Girdwood S.... 35 6.5
M24200_1(M24200|pid:none) Sindbis virus glycoprotein PE2 gene, 3... 35 6.5
U38305_2(U38305|pid:none) Sindbis-like virus isolate S.A.AR86, c... 35 6.5
CP001083_74(CP001083|pid:none) Clostridium botulinum Ba4 str. 65... 35 8.5
U64862_5(U64862|pid:none) Caenorhabditis elegans cosmid ZC8, com... 35 8.5
U64862_4(U64862|pid:none) Caenorhabditis elegans cosmid ZC8, com... 35 8.5
CP000048_558(CP000048|pid:none) Borrelia hermsii DAH, complete g... 35 8.5
U64862_3(U64862|pid:none) Caenorhabditis elegans cosmid ZC8, com... 35 8.5
U52588_1(U52588|pid:none) Highlands J virus envelope glycoprotei... 35 8.5
U52585_1(U52585|pid:none) Highlands J virus envelope glycoprotei... 35 8.5
U52590_1(U52590|pid:none) Highlands J virus envelope glycoprotei... 35 8.5

>AB082543_1(AB082543|pid:none) Dictyostelium discoideum forB gene for
formin homology protein B, complete cds.
Length = 1126

Score = 554 bits (1428), Expect(2) = 0.0
Identities = 298/356 (83%), Positives = 299/356 (83%)
Frame = -3

Query: 1070 QQFLWELSKINRISEKLECFIFKQKLSTQIEELTPDINALLKGSMETKNNKSFHQILEIV 891
+QFLWELSKINRISEKLECFIFKQKLSTQIEELTPDINALLKGSMETKNNKSFHQILEIV
Sbjct: 766 EQFLWELSKINRISEKLECFIFKQKLSTQIEELTPDINALLKGSMETKNNKSFHQILEIV 825

Query: 890 LSLGNFINGGTPRGDIYGFKLDSLSGLLDCRSPSDSKVTLMTWLIQFLENKHPSLLEFHQ 711
LSLGNFINGGTPRGDIYGFKLDSLSGLLDCRSPSDSKVTLMTWLIQFLENKHPSLLEFHQ
Sbjct: 826 LSLGNFINGGTPRGDIYGFKLDSLSGLLDCRSPSDSKVTLMTWLIQFLENKHPSLLEFHQ 885

Query: 710 EFTAIDEAKRVSIQNLRSEVASLKKGLTLLTNEVEKSEGASKTILSGFVGKSTDAVTLIE 531
EFTAIDEAKRVSIQNLRSEVASLKKGLTLLTNEVEKSEGASKTILSGFVGKSTDAVTLIE
Sbjct: 886 EFTAIDEAKRVSIQNLRSEVASLKKGLTLLTNEVEKSEGASKTILSGFVGKSTDAVTLIE 945

Query: 530 KQFNTALESFNSTVQFYGEDVKTSSPEEFFQHVSKFKNEFKRTIESIQKERENVQKLAAR 351
KQFNTALESFNSTVQFYGEDVKTSSPEEFFQHVSKFKNEFKRTIESIQKERENVQKLAAR
Sbjct: 946 KQFNTALESFNSTVQFYGEDVKTSSPEEFFQHVSKFKNEFKRTIESIQKERENVQKLAAR 1005

Query: 350 KKXXXXXXXXXXXXXXSINIAPKSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 171
KK SINIAPKSGV
Sbjct: 1006 KKAAASGPSVPSASGSSINIAPKSGVSPITPTSKSSISISQKPPQSTQPSISVQQQQQQH 1065

Query: 170 XXXXXXXXXQNGTFMDQLMSKMKGGEAIRASRRASQYVFTQNGAGGVGAIDALNAA 3
QNGTFMDQLMSKMKGGEAIRASRRASQYVFTQNGAGGVGAIDALNAA
Sbjct: 1066 HGDDDDDIPQNGTFMDQLMSKMKGGEAIRASRRASQYVFTQNGAGGVGAIDALNAA 1121

Score = 146 bits (369), Expect(2) = 0.0
Identities = 85/157 (54%), Positives = 88/157 (56%), Gaps = 32/157 (20%)
Frame = -2

Query: 1446 NLPPKKSSVPSVKMVGLQWKKVNNNVIENSIWMNVKDYNLNDQFKQLEELFQVKKTNCNY 1267
NLPPKKSSVPSVKMVGLQWKKVNNNVIENSIWMNVKDYNLNDQFKQLEELFQVKK
Sbjct: 609 NLPPKKSSVPSVKMVGLQWKKVNNNVIENSIWMNVKDYNLNDQFKQLEELFQVKKPTATT 668

Query: 1266 XXXXXXXXXXXXXXXXXWFK--------------------------------INSINTNY 1183
K ++ TN
Sbjct: 669 PTAPVGGASNVAVGGGSGSKSIVSTPTISILDPKRSQAIMIMLSRFKISFPDLSKAITNL 728

Query: 1182 QYFRSKXXXXKSLLKFVPSSEEIELLKEEDPSCFGKP 1072
+ KSLLKFVPSSEEIELLKEEDPSCFGKP
Sbjct: 729 DESKLNLEDAKSLLKFVPSSEEIELLKEEDPSCFGKP 765

Score = 43.1 bits (100), Expect = 0.031
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -2

Query: 1722 VSVTTPPSDTNGTTSPPIE 1666
VSVTTPPSDTNGTTSPPIE
Sbjct: 517 VSVTTPPSDTNGTTSPPIE 535

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,033,124,406
Number of extensions: 34432887
Number of successful extensions: 114994
Number of sequences better than 10.0: 273
Number of HSP's gapped: 114774
Number of HSP's successfully gapped: 325
Length of query: 574
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 440
Effective length of database: 611,592,589
Effective search space: 269100739160
Effective search space used: 269100739160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.61 gvh: 0.56 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U10863-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 4
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0