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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10837-1
Contig ID Contig-U10837-1
Contig update 2002.12.18
Contig sequence 
>Contig-U10837-1 (Contig-U10837-1Q) /CSM_Contig/Contig-U10837-1Q.Seq.d
ATAGTGGTGAAAGAGGTCCACCAAAAAATTCACCACTCACTCGTTTCCAA
TTACCTTTAATTTTCCTTAGTGAAGTCTCTTATGAAATTGGTGAAGAGTT
TAGAGTTCATTTGCCAGTATTACTTCAATTAATTTTCCTTGGTCTTTATT
ATAATTCTGGTCAACCAGTTCAAGATCATTGTCGAGTTTTATTATTAAAT
TTAATTAGATGTTTAGTAATTAATAAATATCAAATGCAAGAAGGTGTTAA
TAATCCAAATAATAATAATCCAAATAATAATAATAATAATCCAAATAATA
ATTTAAATATTAATCAAAATAATTTAAATAATTGTAGTATTATTGATATT
GCAACATATGAAGATGCAGTACAATTAGTTGATTTCTTATTACCAACATT
AGGTGCAGAGAATGGTATACCACAAATTCAATCAAAAAAAGATATTTCAA
ATCCAAAATATGTTGTAATGTTATCAAAACGTGTTGTGTCAGTATTATCA
AATGGTAGTGATTTAAATGAACAATGGGGTGTTGCAGCATTGAATTGGGC
AACAAATTCACCAAATCAACGTTTAGCAATGAGATCATTTCAAATTTTAC
GTGGTTTAGAACCAACTACAACCATTGATTCCCTTACAGAGGTGATGCAA
ACAATGGGTAAATATATTCAAAATAATTCAATTGAAAATTCATTATTTAT
TTCAGAAATTCAAGAAACGCTTCAAGTCATGATAAAATGTATTCATCCTA
GTAAATTAATTTTATTCCCACAAATATTTTGGGGTACAGTTGCAATGTTA
CATACTGATTTTGAAAATCATTTCATTGGTGCCATCAAGTTGTTATCAAT
GTTATTGGATATCATAAACTTTAGTGACCGTGCAGTTCAAAATGTTTTCT
TGGCATCAATGCCAAAAGATTGGGAAAATTATCATGGTGTTCAACCATTG
ATTATCAAAGGTTTAATGTCTGTAAATACTGCACCCTATGCATTGGAATT
CCTAAGTAGAATCACGCTTGAACCATGTGATGAAATATTTCAACCTGAAC
CAATAAGATTCTTAACCAATTTAATCAGTTTATTACCTTATCTTTGTTTA
TCAATTGGTGATGAATCTCCAATGCCACAACAAGTAGCCGAGAATCTATC
GGTTGGTTGTGAAAATCAAGGTTGGGATAGATTATCAACAATCTTTGAAC
GTTATAGTTCAAAGGGTTACTTTAAACATTTGGATAGTTTTCTCTCTGAA
ATTTCTGTACCCTTATGTGAAAGTGTTTCAAAGAGTTCAACTTTGGTATT
CTCGCTGTTATTCAATATGTTGGAATATTCAACCGCCGATTATAGATATC
CAATTTTAAAGATCTTAACAGCTTTGGTAAAATGTGGTGTAAATCCCGCC
GAAACAAAGAGTTCACGTGTACCAGAATGGTTTGATACTGTCACTCAGTT
CTTAAATGATCATAAAACTCCTCATTATATAGTTTCTCAAGCAATTAGAT
TCATTGAAATCACAAGTGGTAATTCACCAACCTCTTTGATAACCATTGAT
AATGCCTCTTTGAAACCATCAAAGAATACAATTGGTACAAAGAAATTCTC
AAATAAAGTAGATAGAGGTACTCTATTGGCTGGTAATTACTTTAATAAAG
TATTGGTCGATACTGTTCCTGGTGTACGTTCATCCGTTAATTCACTCACT
AAATCAATCTATTCAACAACTCAAATCTTTGAAACCTTCTTTTCCAATGC
AAATGATTTCACTCAAAAGAATAATGGTGGTGATAATGGTGATGGCGATT
ATAACTCTGAAGAGAATGGTGGTGATGGTGCTTCATCAAGTAATGGTACC
ATCAATAATCGTGATCAACAAC----------TNATNAACAAAAANAANA
AGTTTAAAAAAAATTGGGNNAANGNAAANNTTTANCTGNNCTATTTAAAA
ANAAAAAAANTNANANNCTTTNNAAAACTTTTCNACNACNATTTAATTTT
NNTCNT
Gap gap included
Contig length 1996
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5280203
End point 5282199
Strand (PLUS/MINUS) PLUS
Number of clones 8
Number of EST 9
Link to clone list U10837
List of clone(s) 

est1=AHA814F,1,574
est2=AHE252F,317,930
est3=VHE534F,408,1000
est4=SHH274F,554,1167
est5=AHF605F,711,1179
est6=AFE655F,1046,1636
est7=VHQ316F,1134,1812
est8=VHQ184F,1283,1872
est9=AFE655Z,1873,1997
Translated Amino Acid sequence 
SGERGPPKNSPLTRFQLPLIFLSEVSYEIGEEFRVHLPVLLQLIFLGLYYNSGQPVQDHC
RVLLLNLIRCLVINKYQMQEGVNNPNNNNPNNNNNNPNNNLNINQNNLNNCSIIDIATYE
DAVQLVDFLLPTLGAENGIPQIQSKKDISNPKYVVMLSKRVVSVLSNGSDLNEQWGVAAL
NWATNSPNQRLAMRSFQILRGLEPTTTIDSLTEVMQTMGKYIQNNSIENSLFISEIQETL
QVMIKCIHPSKLILFPQIFWGTVAMLHTDFENHFIGAIKLLSMLLDIINFSDRAVQNVFL
ASMPKDWENYHGVQPLIIKGLMSVNTAPYALEFLSRITLEPCDEIFQPEPIRFLTNLISL
LPYLCLSIGDESPMPQQVAENLSVGCENQGWDRLSTIFERYSSKGYFKHLDSFLSEISVP
LCESVSKSSTLVFSLLFNMLEYSTADYRYPILKILTALVKCGVNPAETKSSRVPEWFDTV
TQFLNDHKTPHYIVSQAIRFIEITSGNSPTSLITIDNASLKPSKNTIGTKKFSNKVDRGT
LLAGNYFNKVLVDTVPGVRSSVNSLTKSIYSTTQIFETFFSNANDFTQKNNGGDNGDGDY
NSEENGGDGASSSNGTINNRDQQ---

---XNKXXKFKKNWXXXXXXLXYLKXKKXXXFXKLFXXXLIXX
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvkevhqkihhslvsnyl*fslvkslmklvksleficqyyfn*fslvfiiilvnqfkii
vefyy*i*ldv**linikckkvliiqiiiiqiiiiiiqiii*ilikii*iivvllilqhm
kmqyn*lisyyqh*vqrmvyhkfnqkkifqiqnml*cyqnvlcqyyqmvvi*mnngvlqh
*igqqihqinv*q*dhfkfyvv*nqlqpliplqr*ckqwvnifkiiqlkihylfqkfkkr
fks**nvfilvn*fyshkyfgvqlqcyililkiislvpsscyqcywis*tlvtvqfkmfs
whqcqkigkiimvfnh*lskv*cl*ilhpmhwns*vesrlnhvmkyfnlnq*ds*pi*sv
yylifvyqlvmnlqchnk*priyrlvvkikvgidyqqslnvivqrvtlniwivfslkfly
pyvkvfqrvqlwysrcysicwniqppiidiqf*rs*qlw*nvv*ippkqrvhvyqnglil
slss*miikllii*flkqldslksqvvihqpl**plimpl*nhqriqlvqrnsqik*iev
lywlvitlikywsilflvyvhplihslnqsiqqlkslkpsfpmqmislkrimvvimvmai
itlkrmvvmvlhqvmvpsiivinn---

---xxtkxxslkkigxxxxfxxxi*kxkxxxxxxnfstti*fxs

Frame B:
*w*krstkkftthsfpitfnfp**sll*nw*rv*ssfasitsinfpwsll*fwstssrsl
ssfiikfn*mfsn**isnarrc**sk***sk*****sk**fky*sk*fk*l*yy*ycni*
rcstis*flitnircrewyttnsikkryfkskiccnviktccvsiikw**fk*tmgccsi
elgnkftkstfsneiisnftwfrtnynh*fpyrgdanng*iysk*fn*kfiiyfrnsrna
sshdkmyss**infiptnilgyscnvty*f*ksfhwchqvvinvigyhkl**pcsskcfl
ginakrlgklswcstidyqrfnvckyctlcigipk*nha*tm**nist*tnkilnqfnqf
itlslfinw**isnattssresigwl*ksrlg*iinnl*tl*fkgll*tfg*fsl*nfct
lm*kcfkefnfgilaviqyvgifnrrl*isnfkdlnsfgkmwcksrrnkeftctrmv*yc
hsvlk*s*nsslysfssn*ih*nhkw*ftnlfdnh**clfetikeynwykeilk*sr*ry
sigw*ll**sigrycswctfir*fth*inlfnnsnl*nllfqck*fhske*ww**w*wrl
*l*reww*wcfik*wyhq*s*st---

---xxqkxxv*kklgxxkxlxxlfkxkkxxxlxktfxxxfnfxx

Frame C:
SGERGPPKNSPLTRFQLPLIFLSEVSYEIGEEFRVHLPVLLQLIFLGLYYNSGQPVQDHC
RVLLLNLIRCLVINKYQMQEGVNNPNNNNPNNNNNNPNNNLNINQNNLNNCSIIDIATYE
DAVQLVDFLLPTLGAENGIPQIQSKKDISNPKYVVMLSKRVVSVLSNGSDLNEQWGVAAL
NWATNSPNQRLAMRSFQILRGLEPTTTIDSLTEVMQTMGKYIQNNSIENSLFISEIQETL
QVMIKCIHPSKLILFPQIFWGTVAMLHTDFENHFIGAIKLLSMLLDIINFSDRAVQNVFL
ASMPKDWENYHGVQPLIIKGLMSVNTAPYALEFLSRITLEPCDEIFQPEPIRFLTNLISL
LPYLCLSIGDESPMPQQVAENLSVGCENQGWDRLSTIFERYSSKGYFKHLDSFLSEISVP
LCESVSKSSTLVFSLLFNMLEYSTADYRYPILKILTALVKCGVNPAETKSSRVPEWFDTV
TQFLNDHKTPHYIVSQAIRFIEITSGNSPTSLITIDNASLKPSKNTIGTKKFSNKVDRGT
LLAGNYFNKVLVDTVPGVRSSVNSLTKSIYSTTQIFETFFSNANDFTQKNNGGDNGDGDY
NSEENGGDGASSSNGTINNRDQQ---

---XNKXXKFKKNWXXXXXXLXYLKXKKXXXFXKLFXXXLIXX
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10837-1 (Contig-U10837-1Q)
/CSM_Contig/Contig-U10837-1Q.Seq.d
         (2006 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10837-1 (Contig-U10837-1Q) /CSM_Contig/Conti...  3009  0.0
Contig-U13408-1 (Contig-U13408-1Q) /CSM_Contig/Conti...    38  0.036
Contig-U11996-1 (Contig-U11996-1Q) /CSM_Contig/Conti...    38  0.036
Contig-U04140-1 (Contig-U04140-1Q) /CSM_Contig/Conti...    38  0.036
Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U13367-1 (Contig-U13367-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11763-1 (Contig-U11763-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11379-1 (Contig-U11379-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U10522-1 (Contig-U10522-1Q) /CSM_Contig/Conti...    36  0.14

>Contig-U10837-1 (Contig-U10837-1Q) /CSM_Contig/Contig-U10837-1Q.Seq.d
          Length = 2006

 Score = 3009 bits (1518), Expect = 0.0
 Identities = 1532/1539 (99%)
 Strand = Plus / Plus

                                                                        
Query: 334  gtagtattattgatattgcaacatatgaagatgcagtacaattagttgatttcttattac 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334  gtagtattattgatattgcaacatatgaagatgcagtacaattagttgatttcttattac 393

                                                                        
Query: 394  caacattaggtgcagagaatggtataccacaaattcaatcnnnnnnngatatttcaaatc 453
            ||||||||||||||||||||||||||||||||||||||||       |||||||||||||
Sbjct: 394  caacattaggtgcagagaatggtataccacaaattcaatcaaaaaaagatatttcaaatc 453

                                                                        
Query: 454  caaaatatgttgtaatgttatcaaaacgtgttgtgtcagtattatcaaatggtagtgatt 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454  caaaatatgttgtaatgttatcaaaacgtgttgtgtcagtattatcaaatggtagtgatt 513

                                                                        
Query: 514  taaatgaacaatggggtgttgcagcattgaattgggcaacaaattcaccaaatcaacgtt 573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514  taaatgaacaatggggtgttgcagcattgaattgggcaacaaattcaccaaatcaacgtt 573

                                                                        
Query: 574  tagcaatgagatcatttcaaattttacgtggtttagaaccaactacaaccattgattccc 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  tagcaatgagatcatttcaaattttacgtggtttagaaccaactacaaccattgattccc 633

                                                                        
Query: 634  ttacagaggtgatgcaaacaatgggtaaatatattcaaaataattcaattgaaaattcat 693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  ttacagaggtgatgcaaacaatgggtaaatatattcaaaataattcaattgaaaattcat 693

                                                                        
Query: 694  tatttatttcagaaattcaagaaacgcttcaagtcatgataaaatgtattcatcctagta 753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  tatttatttcagaaattcaagaaacgcttcaagtcatgataaaatgtattcatcctagta 753

                                                                        
Query: 754  aattaattttattcccacaaatattttggggtacagttgcaatgttacatactgattttg 813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  aattaattttattcccacaaatattttggggtacagttgcaatgttacatactgattttg 813

                                                                        
Query: 814  aaaatcatttcattggtgccatcaagttgttatcaatgttattggatatcataaacttta 873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  aaaatcatttcattggtgccatcaagttgttatcaatgttattggatatcataaacttta 873

                                                                        
Query: 874  gtgaccgtgcagttcaaaatgttttcttggcatcaatgccaaaagattgggaaaattatc 933
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  gtgaccgtgcagttcaaaatgttttcttggcatcaatgccaaaagattgggaaaattatc 933

                                                                        
Query: 934  atggtgttcaaccattgattatcaaaggtttaatgtctgtaaatactgcaccctatgcat 993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  atggtgttcaaccattgattatcaaaggtttaatgtctgtaaatactgcaccctatgcat 993

                                                                        
Query: 994  tggaattcctaagtagaatcacgcttgaaccatgtgatgaaatatttcaacctgaaccaa 1053
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  tggaattcctaagtagaatcacgcttgaaccatgtgatgaaatatttcaacctgaaccaa 1053

                                                                        
Query: 1054 taagattcttaaccaatttaatcagtttattaccttatctttgtttatcaattggtgatg 1113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 taagattcttaaccaatttaatcagtttattaccttatctttgtttatcaattggtgatg 1113

                                                                        
Query: 1114 aatctccaatgccacaacaagtagccgagaatctatcggttggttgtgaaaatcaaggtt 1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 aatctccaatgccacaacaagtagccgagaatctatcggttggttgtgaaaatcaaggtt 1173

                                                                        
Query: 1174 gggatagattatcaacaatctttgaacgttatagttcaaagggttactttaaacatttgg 1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 gggatagattatcaacaatctttgaacgttatagttcaaagggttactttaaacatttgg 1233

                                                                        
Query: 1234 atagttttctctctgaaatttctgtacccttatgtgaaagtgtttcaaagagttcaactt 1293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 atagttttctctctgaaatttctgtacccttatgtgaaagtgtttcaaagagttcaactt 1293

                                                                        
Query: 1294 tggtattctcgctgttattcaatatgttggaatattcaaccgccgattatagatatccaa 1353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tggtattctcgctgttattcaatatgttggaatattcaaccgccgattatagatatccaa 1353

                                                                        
Query: 1354 ttttaaagatcttaacagctttggtaaaatgtggtgtaaatcccgccgaaacaaagagtt 1413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 ttttaaagatcttaacagctttggtaaaatgtggtgtaaatcccgccgaaacaaagagtt 1413

                                                                        
Query: 1414 cacgtgtaccagaatggtttgatactgtcactcagttcttaaatgatcataaaactcctc 1473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 cacgtgtaccagaatggtttgatactgtcactcagttcttaaatgatcataaaactcctc 1473

                                                                        
Query: 1474 attatatagtttctcaagcaattagattcattgaaatcacaagtggtaattcaccaacct 1533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 attatatagtttctcaagcaattagattcattgaaatcacaagtggtaattcaccaacct 1533

                                                                        
Query: 1534 ctttgataaccattgataatgcctctttgaaaccatcaaagaatacaattggtacaaaga 1593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 ctttgataaccattgataatgcctctttgaaaccatcaaagaatacaattggtacaaaga 1593

                                                                        
Query: 1594 aattctcaaataaagtagatagaggtactctattggctggtaattactttaataaagtat 1653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 aattctcaaataaagtagatagaggtactctattggctggtaattactttaataaagtat 1653

                                                                        
Query: 1654 tggtcgatactgttcctggtgtacgttcatccgttaattcactcactaaatcaatctatt 1713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 tggtcgatactgttcctggtgtacgttcatccgttaattcactcactaaatcaatctatt 1713

                                                                        
Query: 1714 caacaactcaaatctttgaaaccttcttttccaatgcaaatgatttcactcaaaagaata 1773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 caacaactcaaatctttgaaaccttcttttccaatgcaaatgatttcactcaaaagaata 1773

                                                                        
Query: 1774 atggtggtgataatggtgatggcgattataactctgaagagaatggtggtgatggtgctt 1833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 atggtggtgataatggtgatggcgattataactctgaagagaatggtggtgatggtgctt 1833

                                                   
Query: 1834 catcaagtaatggtaccatcaataatcgtgatcaacaac 1872
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 catcaagtaatggtaccatcaataatcgtgatcaacaac 1872


 Score =  490 bits (247), Expect = e-138
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtggtgaaagaggtccaccaaaaaattcaccactcactcgtttccaattacctttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atagtggtgaaagaggtccaccaaaaaattcaccactcactcgtttccaattacctttaa 60

                                                                       
Query: 61  ttttccttagtgaagtctcttatgaaattggtgaagagtttagagttcatttgccagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttttccttagtgaagtctcttatgaaattggtgaagagtttagagttcatttgccagtat 120

                                                                       
Query: 121 tacttcaattaattttccttggtctttattataattctggtcaaccagttcaagatcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacttcaattaattttccttggtctttattataattctggtcaaccagttcaagatcatt 180

                                                                       
Query: 181 gtcgagttttattattaaatttaattagatgtttagtaattaataaatatcaaatgcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtcgagttttattattaaatttaattagatgtttagtaattaataaatatcaaatgcaag 240

                  
Query: 241 aaggtgt 247
           |||||||
Sbjct: 241 aaggtgt 247


>Contig-U13408-1 (Contig-U13408-1Q) /CSM_Contig/Contig-U13408-1Q.Seq.d
          Length = 864

 Score = 38.2 bits (19), Expect = 0.036
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1781 tgataatggtgatggcgat 1799
            |||||||||||||||||||
Sbjct: 371  tgataatggtgatggcgat 389


>Contig-U11996-1 (Contig-U11996-1Q) /CSM_Contig/Contig-U11996-1Q.Seq.d
          Length = 1573

 Score = 38.2 bits (19), Expect = 0.036
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 189  ttattattaaatttaatta 207
            |||||||||||||||||||
Sbjct: 1374 ttattattaaatttaatta 1356


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,651
Number of Sequences: 6905
Number of extensions: 26651
Number of successful extensions: 2861
Number of sequences better than 10.0: 339
length of query: 2006
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1990
effective length of database: 5,564,391
effective search space: 11073138090
effective search space used: 11073138090
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U10837-1 (Contig-U10837-1Q) /CSM_Contig/Contig-U10837-1Q.Seq.d
         (2006 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  2839   0.0    2
(BJ427674) Dictyostelium discoideum cDNA clone:ddv63p03, 5' ...  1346   0.0    1
(BJ395407) Dictyostelium discoideum cDNA clone:dds38c20, 5' ...  1209   0.0    1
(BJ427854) Dictyostelium discoideum cDNA clone:ddv63g21, 5' ...  1170   0.0    1
(BJ323457) Dictyostelium discoideum cDNA clone:dda10m14, 5' ...  1166   0.0    1
(BJ420735) Dictyostelium discoideum cDNA clone:ddv40c09, 5' ...  1110   0.0    2
(BJ332565) Dictyostelium discoideum cDNA clone:dda39g14, 5' ...   971   0.0    2
(BJ333278) Dictyostelium discoideum cDNA clone:dda42i02, 5' ...   918   0.0    1
(BJ330612) Dictyostelium discoideum cDNA clone:dda32l04, 5' ...   428   0.0    3
(AC108513) Homo sapiens BAC clone RP13-936H15 from 7, comple...    36   0.001  3
(AC108448) Homo sapiens chromosome 11, clone CTD-2544D21, co...    44   0.001  2
(AC016765) Homo sapiens chromosome 11 clone RP11-555F1, WORK...    44   0.001  2
(AC201854) Macaca mulatta chromosome 14 clone CH250-337D6, W...    32   0.011  3
(AC133155) Mus musculus clone RP24-418L20, WORKING DRAFT SEQ...    38   0.014  2
(AC122618) Rattus norvegicus clone CH230-65D16, WORKING DRAF...    44   0.014  2
(AC147119) Pan troglodytes BAC clone CH251-518N19 from Y, co...    42   0.014  2
(AC174482) Pan troglodytes BAC clone CH251-527O19 from chrom...    42   0.014  2
(AC068550) Homo sapiens chromosome 17 clone RP11-659P18, WOR...    40   0.014  2
(AL136307) Human DNA sequence from clone RP3-380B8 on chromo...    42   0.014  2
(AC015978) Homo sapiens BAC clone RP11-529I21 from Y, comple...    42   0.014  2
(AC064823) Homo sapiens chromosome Y clone RP11-128H16, WORK...    42   0.014  2
(AC007241) Homo sapiens BAC clone RP11-157F24 from Y, comple...    42   0.014  2
(AC106858) Homo sapiens chromosome 17, clone RP11-347L15, co...    40   0.014  2
(AC147154) Pan troglodytes BAC clone CH251-175E24 from Y, co...    42   0.014  2
(AC007933) Homo sapiens chromosome 17 clone hRPC.908_O_12 ma...    40   0.014  2
(AC146246) Pan troglodytes BAC clone clone CH251-154C4 from ...    42   0.014  2
(AC147140) Pan troglodytes BAC clone CH251-329N7 from Y, com...    42   0.014  2
(AL691459) Human DNA sequence from clone RP11-543D5 on chrom...    42   0.014  2
(AC149294) Mus musculus chromosome 15, clone RP24-389G21, co...    38   0.014  2
(AC131041) Mus musculus chromosome 15 clone RP24-389G21 map ...    38   0.014  2
(Z83838) Human DNA sequence from clone RP1-127B20 on chromos...    38   0.014  2
(AC027343) Homo sapiens chromosome 5 clone CTD-2296D1, compl...    42   0.015  2
(CW933986) EDCCL80TR A. castellanii, 6-8 kb library from tot...    44   0.017  2
(AC178221) Strongylocentrotus purpuratus clone R3-3085L08, W...    30   0.040  3
(AC140675) Mus musculus BAC clone RP23-44J10 from chromosome...    42   0.051  2
(AL591433) Mouse DNA sequence from clone RP23-268N22 on chro...    40   0.052  2
(AL954690) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    40   0.052  2
(DJ441123) Breast Cancer Biomarkers.                               42   0.052  2
(CS200174) Sequence 55 from Patent WO2005106044.                   42   0.052  2
(AC139910) Rattus norvegicus clone CH230-321E12, WORKING DRA...    40   0.052  2
(CU640456) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.052  2
(AC140145) Homo sapiens chromosome 5 clone RP11-244N5, WORKI...    40   0.052  2
(AC122414) Mus musculus BAC clone RP24-150D8 from chromosome...    42   0.052  2
(AC198088) Macaca mulatta clone CH250-523A17, WORKING DRAFT ...    42   0.052  2
(AC040922) Homo sapiens chromosome 19 clone RP11-699H21 map ...    40   0.052  2
(AC025273) Homo sapiens chromosome 16 clone CTB-36G5, WORKIN...    36   0.052  2
(AC110496) Mus musculus chromosome 7, clone RP23-56P3, compl...    42   0.052  2
(AC020907) Homo sapiens chromosome 19 clone CTD-2527I21, com...    42   0.052  2
(AC101941) Mus musculus chromosome 7, clone RP24-112F21, com...    42   0.052  2
(DJ441124) Breast Cancer Biomarkers.                               42   0.053  2
(CS200175) Sequence 56 from Patent WO2005106044.                   42   0.053  2
(CU928107) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.053  2
(AC130452) Homo sapiens chromosome 16 clone CTA-279B10, comp...    36   0.053  2
(AC008888) Homo sapiens chromosome 19 clone CTD-2221F12, com...    40   0.053  2
(AL353658) Human DNA sequence from clone RP11-358D14 on chro...    42   0.055  2
(BD318316) Novel binding protein of mammalian Target of Rapa...    42   0.056  2
(BZ831715) CH240_257L24.TV CHORI-240 Bos taurus genomic clon...    42   0.067  2
(EJ497261) 1095403582403 Global-Ocean-Sampling_GS-28-01-01-1...    42   0.15   3
(AC185787) Bos taurus clone RP42-252I10, WORKING DRAFT SEQUE...    40   0.19   2
(AC136285) Homo sapiens chromosome 16 clone RP11-899L11, com...    36   0.19   2
(AC094895) Rattus norvegicus clone CH230-6C1, WORKING DRAFT ...    36   0.19   2
(AC132187) Pan troglodytes clone RP43-47I22, WORKING DRAFT S...    34   0.19   2
(AC197386) Pongo abelii chromosome UNKNOWN clone CH276-5G2, ...    36   0.19   2
(CU210928) Mouse DNA sequence from clone CH29-567F20 on chro...    34   0.19   2
(CU914270) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.19   2
(AC128967) Rattus norvegicus clone CH230-194J4, *** SEQUENCI...    36   0.19   2
(AC230960) Bos taurus clone CH240-494N7, WORKING DRAFT SEQUE...    36   0.19   2
(AC220396) Bos taurus clone CH240-359P7, WORKING DRAFT SEQUE...    40   0.19   2
(AL928617) Mouse DNA sequence from clone RP23-326E21 on chro...    36   0.19   2
(CU076041) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.19   2
(AC200446) MACACA MULATTA BAC clone CH250-410C4 from chromos...    34   0.19   2
(AC140113) Homo sapiens PAC clone RP1-85D24 from Y, complete...    36   0.19   2
(AC174868) Pan troglodytes BAC clone CH251-401P11 from chrom...    36   0.19   2
(Z97192) Human DNA sequence from clone RP1-29C18 on chromoso...    36   0.19   2
(Z98747) Human DNA sequence from clone RP1-37J18 on chromoso...    40   0.20   2
(AC073578) Homo sapiens 12 BAC RP11-897M7 (Roswell Park Canc...    38   0.20   2
(AC179915) Strongylocentrotus purpuratus clone R3-1003D11, W...    38   0.20   2
(AC172396) Strongylocentrotus purpuratus clone R3-14F23, WOR...    38   0.20   2
(BX897677) Neurospora crassa DNA linkage group VI BAC clone ...    40   0.20   2
(AC027159) Homo sapiens chromosome 14 clone RP11-116M19 map ...    40   0.20   2
(AP006547) Homo sapiens genomic DNA, chromosome 8q23, clone:...    38   0.22   2
(CE372922) tigr-gss-dog-17000362182764 Dog Library Canis lup...    40   0.25   2
(EL494763) D06_PFBAMHI-S-T3-PLATE12A.AB1 Blood stage Plasmod...    44   0.59   2
(BX572642) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    36   0.66   2
(AC223987) Bos taurus clone CH240-452J12, WORKING DRAFT SEQU...    36   0.68   2
(AC130845) Rattus norvegicus clone CH230-5A11, *** SEQUENCIN...    36   0.69   2
(AC130507) Rattus norvegicus clone CH230-62B4, *** SEQUENCIN...    36   0.69   2
(AC103455) Rattus norvegicus clone CH230-200F2, WORKING DRAF...    36   0.69   2
(AC129636) Rattus norvegicus clone CH230-69C12, *** SEQUENCI...    36   0.69   2
(AC098981) Rattus norvegicus clone CH230-112J19, *** SEQUENC...    36   0.69   2
(AC096272) Rattus norvegicus clone CH230-42H17, *** SEQUENCI...    36   0.69   2
(AC129269) Rattus norvegicus clone CH230-199H22, WORKING DRA...    36   0.69   2
(AC112276) Rattus norvegicus clone CH230-10L6, WORKING DRAFT...    36   0.69   2
(AC134361) Rattus norvegicus clone CH230-6H10, WORKING DRAFT...    36   0.69   2
(AC123321) Rattus norvegicus clone CH230-214J13, *** SEQUENC...    36   0.69   2
(AC095012) Rattus norvegicus clone CH230-6O11, WORKING DRAFT...    36   0.69   2
(AC094409) Rattus norvegicus clone CH230-3M23, WORKING DRAFT...    36   0.69   2
(AC112107) Rattus norvegicus clone CH230-81N13, WORKING DRAF...    36   0.69   2
(AC168219) Mus musculus chromosome 15 clone RP23-142B21, WOR...    36   0.69   2
(AC111819) Rattus norvegicus clone CH230-50M22, WORKING DRAF...    36   0.69   2

>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
             strain AX4, complete sequence.
          Length = 413138

 Score = 2839 bits (1432), Expect(2) = 0.0
 Identities = 1432/1432 (100%)
 Strand = Plus / Minus


Query: 441   gatatttcaaatccaaaatatgttgtaatgttatcaaaacgtgttgtgtcagtattatca 500
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41088 gatatttcaaatccaaaatatgttgtaatgttatcaaaacgtgttgtgtcagtattatca 41029


Query: 501   aatggtagtgatttaaatgaacaatggggtgttgcagcattgaattgggcaacaaattca 560
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41028 aatggtagtgatttaaatgaacaatggggtgttgcagcattgaattgggcaacaaattca 40969


Query: 561   ccaaatcaacgtttagcaatgagatcatttcaaattttacgtggtttagaaccaactaca 620
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40968 ccaaatcaacgtttagcaatgagatcatttcaaattttacgtggtttagaaccaactaca 40909


Query: 621   accattgattcccttacagaggtgatgcaaacaatgggtaaatatattcaaaataattca 680
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40908 accattgattcccttacagaggtgatgcaaacaatgggtaaatatattcaaaataattca 40849


Query: 681   attgaaaattcattatttatttcagaaattcaagaaacgcttcaagtcatgataaaatgt 740
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40848 attgaaaattcattatttatttcagaaattcaagaaacgcttcaagtcatgataaaatgt 40789


Query: 741   attcatcctagtaaattaattttattcccacaaatattttggggtacagttgcaatgtta 800
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40788 attcatcctagtaaattaattttattcccacaaatattttggggtacagttgcaatgtta 40729


Query: 801   catactgattttgaaaatcatttcattggtgccatcaagttgttatcaatgttattggat 860
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40728 catactgattttgaaaatcatttcattggtgccatcaagttgttatcaatgttattggat 40669


Query: 861   atcataaactttagtgaccgtgcagttcaaaatgttttcttggcatcaatgccaaaagat 920
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40668 atcataaactttagtgaccgtgcagttcaaaatgttttcttggcatcaatgccaaaagat 40609


Query: 921   tgggaaaattatcatggtgttcaaccattgattatcaaaggtttaatgtctgtaaatact 980
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40608 tgggaaaattatcatggtgttcaaccattgattatcaaaggtttaatgtctgtaaatact 40549


Query: 981   gcaccctatgcattggaattcctaagtagaatcacgcttgaaccatgtgatgaaatattt 1040
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40548 gcaccctatgcattggaattcctaagtagaatcacgcttgaaccatgtgatgaaatattt 40489


Query: 1041  caacctgaaccaataagattcttaaccaatttaatcagtttattaccttatctttgttta 1100
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40488 caacctgaaccaataagattcttaaccaatttaatcagtttattaccttatctttgttta 40429


Query: 1101  tcaattggtgatgaatctccaatgccacaacaagtagccgagaatctatcggttggttgt 1160
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40428 tcaattggtgatgaatctccaatgccacaacaagtagccgagaatctatcggttggttgt 40369


Query: 1161  gaaaatcaaggttgggatagattatcaacaatctttgaacgttatagttcaaagggttac 1220
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40368 gaaaatcaaggttgggatagattatcaacaatctttgaacgttatagttcaaagggttac 40309


Query: 1221  tttaaacatttggatagttttctctctgaaatttctgtacccttatgtgaaagtgtttca 1280
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40308 tttaaacatttggatagttttctctctgaaatttctgtacccttatgtgaaagtgtttca 40249


Query: 1281  aagagttcaactttggtattctcgctgttattcaatatgttggaatattcaaccgccgat 1340
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40248 aagagttcaactttggtattctcgctgttattcaatatgttggaatattcaaccgccgat 40189


Query: 1341  tatagatatccaattttaaagatcttaacagctttggtaaaatgtggtgtaaatcccgcc 1400
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188 tatagatatccaattttaaagatcttaacagctttggtaaaatgtggtgtaaatcccgcc 40129


Query: 1401  gaaacaaagagttcacgtgtaccagaatggtttgatactgtcactcagttcttaaatgat 1460
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40128 gaaacaaagagttcacgtgtaccagaatggtttgatactgtcactcagttcttaaatgat 40069


Query: 1461  cataaaactcctcattatatagtttctcaagcaattagattcattgaaatcacaagtggt 1520
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40068 cataaaactcctcattatatagtttctcaagcaattagattcattgaaatcacaagtggt 40009


Query: 1521  aattcaccaacctctttgataaccattgataatgcctctttgaaaccatcaaagaataca 1580
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40008 aattcaccaacctctttgataaccattgataatgcctctttgaaaccatcaaagaataca 39949


Query: 1581  attggtacaaagaaattctcaaataaagtagatagaggtactctattggctggtaattac 1640
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39948 attggtacaaagaaattctcaaataaagtagatagaggtactctattggctggtaattac 39889


Query: 1641  tttaataaagtattggtcgatactgttcctggtgtacgttcatccgttaattcactcact 1700
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39888 tttaataaagtattggtcgatactgttcctggtgtacgttcatccgttaattcactcact 39829


Query: 1701  aaatcaatctattcaacaactcaaatctttgaaaccttcttttccaatgcaaatgatttc 1760
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39828 aaatcaatctattcaacaactcaaatctttgaaaccttcttttccaatgcaaatgatttc 39769


Query: 1761  actcaaaagaataatggtggtgataatggtgatggcgattataactctgaagagaatggt 1820
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39768 actcaaaagaataatggtggtgataatggtgatggcgattataactctgaagagaatggt 39709


Query: 1821  ggtgatggtgcttcatcaagtaatggtaccatcaataatcgtgatcaacaac 1872
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39708 ggtgatggtgcttcatcaagtaatggtaccatcaataatcgtgatcaacaac 39657

 Score =  198 bits (100), Expect(2) = 0.0
 Identities = 100/100 (100%)
 Strand = Plus / Minus


Query: 334   gtagtattattgatattgcaacatatgaagatgcagtacaattagttgatttcttattac 393
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41195 gtagtattattgatattgcaacatatgaagatgcagtacaattagttgatttcttattac 41136


Query: 394   caacattaggtgcagagaatggtataccacaaattcaatc 433
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 41135 caacattaggtgcagagaatggtataccacaaattcaatc 41096

 Score =  420 bits (212), Expect = e-113
 Identities = 215/216 (99%)
 Strand = Plus / Minus


Query: 1     atagtggtgaaagaggtccaccaaaaaattcaccactcactcgtttccaattacctttaa 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41528 atagtggtgaaagaggtccaccaaaaaattcaccactcactcgtttccaattacctttaa 41469


Query: 61    ttttccttagtgaagtctcttatgaaattggtgaagagtttagagttcatttgccagtat 120
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41468 ttttccttagtgaagtttcttatgaaattggtgaagagtttagagttcatttgccagtat 41409


Query: 121   tacttcaattaattttccttggtctttattataattctggtcaaccagttcaagatcatt 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41408 tacttcaattaattttccttggtctttattataattctggtcaaccagttcaagatcatt 41349


Query: 181   gtcgagttttattattaaatttaattagatgtttag 216
             ||||||||||||||||||||||||||||||||||||
Sbjct: 41348 gtcgagttttattattaaatttaattagatgtttag 41313

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,089,135,367
Number of extensions: 120861706
Number of successful extensions: 9690913
Number of sequences better than 10.0: 615
Length of query: 2006
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1982
Effective length of database: 97,308,875,965
Effective search space: 192866192162630
Effective search space used: 192866192162630
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10837-1 (Contig-U10837-1Q) /CSM_Contig/Contig-U10837-1Q.Seq.d
         (2006 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_18(AC116305|pid:none) Dictyostelium discoideum chromoso...  1124   0.0
AK118154_1(AK118154|pid:none) Arabidopsis thaliana At5g15680 mRN...   202   4e-50
AM920436_2090(AM920436|pid:none) Penicillium chrysogenum Wiscons...   124   1e-26
AM270176_10(AM270176|pid:none) Aspergillus niger contig An08c021...   122   6e-26
AL807577_1(AL807577|pid:none) Aspergillus fumigatus BAC AFA12F2.      119   5e-25
AP007157_465(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   115   6e-24
CU928171_375(CU928171|pid:none) Kluyveromyces thermotolerans str...   112   4e-23
CU638744_310(CU638744|pid:none) Podospora anserina genomic DNA c...   110   2e-22
DQ116822_1(DQ116822|pid:none) Saccharomyces cerevisiae strain YJ...   110   2e-22
DQ116815_1(DQ116815|pid:none) Saccharomyces cerevisiae strain YJ...   110   2e-22
DQ116819_1(DQ116819|pid:none) Saccharomyces cerevisiae strain YJ...   110   2e-22
DQ116823_1(DQ116823|pid:none) Saccharomyces cerevisiae strain YJ...   109   3e-22
CR382126_200(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   108   6e-22
(Q9HDV6) RecName: Full=Cell polarity protein mor2; AltName: Full...   105   6e-21
FM992690_141(FM992690|pid:none) Candida dubliniensis CD36 chromo...   102   5e-20
CR380953_376(CR380953|pid:none) Candida glabrata strain CBS138 c...   102   7e-20
FN392322_113(FN392322|pid:none) Pichia pastoris GS115 chromosome...   101   9e-20
CR382133_380(CR382133|pid:none) Debaryomyces hansenii strain CBS...    99   4e-19
AP004082_2(AP004082|pid:none) Oryza sativa Japonica Group genomi...    99   8e-19
AE016818_718(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    96   5e-18
CU928173_47(CU928173|pid:none) Zygosaccharomyces rouxii strain C...    96   5e-18
CR382130_964(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    84   1e-14
AC002483_1(AC002483|pid:none) Homo sapiens PAC clone 248O15 from...    77   2e-12
(Q5TBA9) RecName: Full=Protein furry homolog;  &AL137143_1(AL137...    77   2e-12
BC172205_1(BC172205|pid:none) Synthetic construct Homo sapiens c...    77   2e-12
AB294244_1(AB294244|pid:none) Xenopus laevis FRY mRNA for furry ...    71   1e-10
BC156499_1(BC156499|pid:none) Synthetic construct Mus musculus c...    69   5e-10
BC051118_1(BC051118|pid:none) Mus musculus furry homolog-like (D...    69   5e-10
BC121972_1(BC121972|pid:none) Xenopus tropicalis furry, mRNA (cD...    67   2e-09
AX405683_1(AX405683|pid:none) Sequence 98 from Patent WO0222660.       64   2e-08
AK128543_1(AK128543|pid:none) Homo sapiens cDNA FLJ46702 fis, cl...    64   2e-08
U11279_1(U11279|pid:none) Caenorhabditis elegans cosmid F21H11, ...    47   0.003
AY763581_1(AY763581|pid:none) Caenorhabditis elegans SAX-2 (sax-...    47   0.003
CP000589_118(CP000589|pid:none) Ostreococcus lucimarinus CCE9901...    44   0.022
D88450(D88450)protein F21H11.2 [imported] - Caenorhabditis elegans     42   0.083
DQ415922_10(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com...    42   0.11
CP001519_16(CP001519|pid:none) Borrelia sp. SV1 plasmid SV1_lp17...    41   0.14
FN357375_12(FN357375|pid:none) Schistosoma mansoni genome sequen...    41   0.19
CP000139_293(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    37   3.5
BT031102_1(BT031102|pid:none) Drosophila melanogaster IP08063 fu...    35   7.8

>AC116305_18(AC116305|pid:none) Dictyostelium discoideum chromosome 2
            map 1005175-1418323 strain AX4, complete sequence.
          Length = 2868

 Score = 1124 bits (2908), Expect = 0.0
 Identities = 575/623 (92%), Positives = 575/623 (92%)
 Frame = +3

Query: 3    SGERGPPKNSPLTRFQLPLIFLSEVSYEIGEEFRVHLPVLLQLIFLGLYYNSGQPVQDHC 182
            SGERGPPKNSPLTRFQLPLIFLSEVSYEIGEEFRVHLPVLLQLIFLGLYYNSGQPVQDHC
Sbjct: 1645 SGERGPPKNSPLTRFQLPLIFLSEVSYEIGEEFRVHLPVLLQLIFLGLYYNSGQPVQDHC 1704

Query: 183  RVLLLNLIRCLVINKYQMQEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSIIDIATYE 362
            RVLLLNLIRCLVINKYQMQEGV                            CSIIDIATYE
Sbjct: 1705 RVLLLNLIRCLVINKYQMQEGVNNPNNNNPNNNNNNPNNNLNINQNNLNNCSIIDIATYE 1764

Query: 363  DAVQLVDFLLPTLGAENGIPQIQSKKDISNPKYVVMLSKRVVSVLSNGSDLNEQWGVAAL 542
            DAVQLVDFLLPTLGAENGIPQIQSKKDISNPKYVVMLSKRVVSVLSNGSDLNEQWGVAAL
Sbjct: 1765 DAVQLVDFLLPTLGAENGIPQIQSKKDISNPKYVVMLSKRVVSVLSNGSDLNEQWGVAAL 1824

Query: 543  NWATNSPNQRLAMRSFQILRGLEPTTTIDSLTEVMQTMGKYIQNNSIENSLFISEIQETL 722
            NWATNSPNQRLAMRSFQILRGLEPTTTIDSLTEVMQTMGKYIQNNSIENSLFISEIQETL
Sbjct: 1825 NWATNSPNQRLAMRSFQILRGLEPTTTIDSLTEVMQTMGKYIQNNSIENSLFISEIQETL 1884

Query: 723  QVMIKCIHPSKLILFPQIFWGTVAMLHTDFENHFIGAIKLLSMLLDIINFSDRAVQNVFL 902
            QVMIKCIHPSKLILFPQIFWGTVAMLHTDFENHFIGAIKLLSMLLDIINFSDRAVQNVFL
Sbjct: 1885 QVMIKCIHPSKLILFPQIFWGTVAMLHTDFENHFIGAIKLLSMLLDIINFSDRAVQNVFL 1944

Query: 903  ASMPKDWENYHGVQPLIIKGLMSVNTAPYALEFLSRITLEPCDEIFQPEPIRFLTNLISL 1082
            ASMPKDWENYHGVQPLIIKGLMSVNTAPYALEFLSRITLEPCDEIFQPEPIRFLTNLISL
Sbjct: 1945 ASMPKDWENYHGVQPLIIKGLMSVNTAPYALEFLSRITLEPCDEIFQPEPIRFLTNLISL 2004

Query: 1083 LPYLCLSIGDESPMPQQVAENLSVGCENQGWDRLSTIFERYSSKGYFKHLDSFLSEISVP 1262
            LPYLCLSIGDESPMPQQVAENLSVGCENQGWDRLSTIFERYSSKGYFKHLDSFLSEISVP
Sbjct: 2005 LPYLCLSIGDESPMPQQVAENLSVGCENQGWDRLSTIFERYSSKGYFKHLDSFLSEISVP 2064

Query: 1263 LCESVSKSSTLVFSLLFNMLEYSTADYRYPILKILTALVKCGVNPAETKSSRVPEWFDTV 1442
            LCESVSKSSTLVFSLLFNMLEYSTADYRYPILKILTALVKCGVNPAETKSSRVPEWFDTV
Sbjct: 2065 LCESVSKSSTLVFSLLFNMLEYSTADYRYPILKILTALVKCGVNPAETKSSRVPEWFDTV 2124

Query: 1443 TQFLNDHKTPHYIVSQAIRFIEITSGNSPTSLITIDNASLKPSKNTIGTKKFSNKVDRGT 1622
            TQFLNDHKTPHYIVSQAIRFIEITSGNSPTSLITIDNASLKPSKNTIGTKKFSNKVDRGT
Sbjct: 2125 TQFLNDHKTPHYIVSQAIRFIEITSGNSPTSLITIDNASLKPSKNTIGTKKFSNKVDRGT 2184

Query: 1623 LLAGNYFNKVLVDTVPGVRSSVNSLTKSIYSTTQIFETFFSNANDFTQKXXXXXXXXXXX 1802
            LLAGNYFNKVLVDTVPGVRSSVNSLTKSIYSTTQIFETFFSNANDFTQK
Sbjct: 2185 LLAGNYFNKVLVDTVPGVRSSVNSLTKSIYSTTQIFETFFSNANDFTQKNNGGDNGDGDY 2244

Query: 1803 XXXXXXXXXASSSNGTINNRDQQ 1871
                     ASSSNGTINNRDQQ
Sbjct: 2245 NSEENGGDGASSSNGTINNRDQQ 2267

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,865,093,575
Number of extensions: 61497351
Number of successful extensions: 129874
Number of sequences better than 10.0: 40
Number of HSP's gapped: 129802
Number of HSP's successfully gapped: 47
Length of query: 668
Length of database: 1,040,966,779
Length adjustment: 135
Effective length of query: 533
Effective length of database: 608,388,304
Effective search space: 324270966032
Effective search space used: 324270966032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.62  gvh: 0.49  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U10837-1 is mit
VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0