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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10835-1
Contig ID Contig-U10835-1
Contig update 2002.12.18
Contig sequence 
>Contig-U10835-1 (Contig-U10835-1Q) /CSM_Contig/Contig-U10835-1Q.Seq.d
CAAGAATCATGTATTATCACATACNCTATTGAAGAAGTTAAAACAGCAAG
AGAATATCGATGGGCAGGTTTAGATTTAACATTGGATAAAGATTCAATCA
AAATTTCAGTCTCAATTAAAAATTACACTTTTAATAGTGTTTTAAATAAT
CTTCAATTAAGATTTGAATCATTAGTAGGTGATAATAATAGAAATACTCA
AGATAATAATGAATGTAATAATAGAGATACTCAAGTTGATACAAGTGAAA
TCGATAAGAATCAATTATTAAATTATTTAACAATACCAAGAAATCAAAAA
GTTTTATATGGTCGTTTCATTAATAGAGTTATTAGTGATTCAAGACAAAC
TTTTATAACAACCTCTGTAATTCCAAATAATAATAATAATAATAAACAAT
CAGTGATCATTGGATTAAATTTACCACATTGTAAAAATGAATGTTTAATT
GATCCTGATTTCTCTGTTTTGGTTTCATCATCTTATCAAGAATGTTCAAG
TGATTTAAATAATGGTGGTCGTGCCAGTTGGGTATTACCTGTTGCTATCG
TTGTACCATGTGTTGCTGTAGTTTTAATAATTATAATCGGTGCTGTAATA
TATAGAAAAAATAGAATGGCAATTTTAGTTGCAAAGAATAAATATTCATT
TAGTCTTAGAAAAATGTCTAAAAAAAATTAAATTATTAAATAATTAATAA
TAAAAATAATAAAATTAAAAAAATAATTATTATTTTCTAAATTAAATAAT
AAAACAATAATAATATTTATATATAAAAATA----------TACATTGTA
TTGAAACATTTGTTATGGTATTTTGAATTAATGGACAATTTTGATTATCA
ATGCTAACTATTAAATTATTATGAGAATTTGAAAACCAACCATATAAAGT
TATATCACCACCCATTTCATTAACAGAATCAATCGAGGATACATATATAT
TGGTATTTATACTACAATCATCACCACTCCATCCAACTGCGCAAACACAT
TTTAATGAATTTGTATCACAATATTCACCAATGTTACACTCTCTATAACA
TTTAGGTGGAAGTTGTGATTGAGTTGCATTTACTGTTTTAACAATTTCTT
TAATACTTGAAAAATAAATTGTAAAAATACCATTTGATGGTAATAATTCA
TTAAAATAGTATGAAGATTCAAATCTGTATGATGGAATGGTTGGTTCCCA
ACTAAAAAATGGTACCGTATAAAAATCTTGAGAATTAAGTCCAATATCAT
TTCCCCACATTATTAATTTTTTATTTACTCTATCAATATAAATATTAACT
TTAATTGTAGAACATGTTGGGTCATATTTCAAATTACTATTAAATAAAAA
AATATTTCTTGATGATGATGGGTAACATGAAAAACATGAAGGTAAAGTTC
CAGATAAATTATTAAACTTTAAATCTAAAGACATTGAATTCATTGTACAA
TAACTTGAATCAACTGTTCCNATATCTTTTTTATAAAAAAAATAATAAAA
ATAAAA
Gap gap included
Contig length 1496
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 6
Number of EST 7
Link to clone list U10835
List of clone(s) 

est1=AFE571F,-67,510
est2=VHF813Z,1,712
est3=SHG715Z,40,708
est4=SHD523Z,41,767
est5=AHJ786Z,56,727
est6=VHL469Z,179,403
est7=AFE571Z,783,1498
Translated Amino Acid sequence 
qesciityxieevktareyrwagldltldkdsikisvsiknytfnsvlnnlqlrfeslvg
dnnrntqdnnecnnrdtqvdtseidknqllnyltiprnqkvlygrfinrvisdsrqtfit
tsvipnnnnnnkqsviiglnlphckneclidpdfsvlvsssyqecssdlnnggraswvlp
vaivvpcvavvliiiigaviyrknrmailvaknkysfslrkmskkn*iik*liikiiklk
k*LLFSKLNNKTIIIFIYKN---

---YIVLKHLLWYFELMDNFDYQC*llnyyenlktnhiklyhhpfh*qnqsrihiywyly
ynhhhsiqlrkhilmnlyhnihqcytlyni*vevvielhllf*qfl*ylknkl*kyhlmv
iih*nsmkiqicmmewlvpn*kmvpyknlen*vqyhfptllifyllyqyky*l*l*nmlg
hisnyy*ikkyflmmmgnmknmkvkfqiny*tlnlktlnslynnlnqlfxylfykknnkn
k
Translated Amino Acid sequence (All Frames) 
Frame A:
qesciityxieevktareyrwagldltldkdsikisvsiknytfnsvlnnlqlrfeslvg
dnnrntqdnnecnnrdtqvdtseidknqllnyltiprnqkvlygrfinrvisdsrqtfit
tsvipnnnnnnkqsviiglnlphckneclidpdfsvlvsssyqecssdlnnggraswvlp
vaivvpcvavvliiiigaviyrknrmailvaknkysfslrkmskkn*iik*liikiiklk
k*LLFSKLNNKTIIIFIYKN---

---YIVLKHLLWYFELMDNFDYQC*llnyyenlktnhiklyhhpfh*qnqsrihiywyly
ynhhhsiqlrkhilmnlyhnihqcytlyni*vevvielhllf*qfl*ylknkl*kyhlmv
iih*nsmkiqicmmewlvpn*kmvpyknlen*vqyhfptllifyllyqyky*l*l*nmlg
hisnyy*ikkyflmmmgnmknmkvkfqiny*tlnlktlnslynnlnqlfxylfykknnkn
k

Frame B:
knhvlshtllkklkqqenidgqv*i*hwikiqskfqsqlkitllivf*iifn*dlnh**v
iiieilkiimnviieilkliqvksiriny*ii*qyqeikkfymvvsliellviqdkll*q
pl*fqiiiiiinnq*sld*iyhivkmnv*lilislfwfhhliknvqvi*imvvvpvgyyl
llslyhvll*f**l*svl*yiekiewqf*lqrinihlvlekclkkikllnn***k**n*k
nnyyfln*iikq**ylyiki---

---tly*nicygiln*wtiliinany*iimri*kpti*syitthfinrinrgyiyigiyt
tiittpsncantf**icitiftnvtlsitfrwkl*lsciycfnnffnt*kincknti*w*
*fikiv*rfksv*wngwfptkkwyrikilriksniisphy*ffiysinininfncrtcwv
ifqitik*knis***wvt*kt*r*ssr*iikl*i*rh*ihctit*incsxiffikkiiki
k

Frame C:
rimyyhixy*rs*nskrismgrfrfnig*rfnqnfsln*klhf**cfk*ssiki*iisr*
***kysr***m***ryss*yk*nr*esiiklfnntkksksfiwsfh**sy**fktnfynn
lcnsk******tisdhwikfttl*k*mfn*s*flcfgfiilsrmfk*fk*wwscqlgitc
cyrctmcccsfnnynrccni*kk*ngnfscke*ifi*s*knv*kklny*iinnknnkikk
iiiif*ik**nnnniyi*k---

---hcietfvmvf*ingqf*lsmltikll*efenqpykvisppisltesiedtyilvfil
qssplhptaqthfnefvsqyspmlhsl*hlggscd*vaftvltislilek*ivkipfdgn
nslk*yedsnlydgmvgsqlkngtv*ks*elspisfphiinflftlsi*iltlivehvgs
yfklllnkkifldddg*hekhegkvpdkllnfkskdiefivq*lestvpisfl*kk**k*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10835-1 (Contig-U10835-1Q)
/CSM_Contig/Contig-U10835-1Q.Seq.d
         (1506 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10835-1 (Contig-U10835-1Q) /CSM_Contig/Conti...  1322  0.0
Contig-U12072-1 (Contig-U12072-1Q) /CSM_Contig/Conti...    82  2e-15
Contig-U11534-1 (Contig-U11534-1Q) /CSM_Contig/Conti...    66  1e-10
Contig-U12416-1 (Contig-U12416-1Q) /CSM_Contig/Conti...    62  2e-09
Contig-U11914-1 (Contig-U11914-1Q) /CSM_Contig/Conti...    60  7e-09
Contig-U11407-1 (Contig-U11407-1Q) /CSM_Contig/Conti...    58  3e-08
Contig-U12569-1 (Contig-U12569-1Q) /CSM_Contig/Conti...    56  1e-07
Contig-U14850-1 (Contig-U14850-1Q) /CSM_Contig/Conti...    54  5e-07
Contig-U12036-1 (Contig-U12036-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U12490-1 (Contig-U12490-1Q) /CSM_Contig/Conti...    44  4e-04

>Contig-U10835-1 (Contig-U10835-1Q) /CSM_Contig/Contig-U10835-1Q.Seq.d
          Length = 1506

 Score = 1322 bits (667), Expect = 0.0
 Identities = 684/691 (98%)
 Strand = Plus / Plus

                                                                        
Query: 792  tacattgtattgaaacatttgttatggtattttgaattaatggacaattttgattatcaa 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  tacattgtattgaaacatttgttatggtattttgaattaatggacaattttgattatcaa 851

                                                                        
Query: 852  tgctaactattaaattattatgagaatttgaaaaccaaccatataaagttatatcaccac 911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  tgctaactattaaattattatgagaatttgaaaaccaaccatataaagttatatcaccac 911

                                                                        
Query: 912  ccatttcattaacagaatcaatcgaggatacatatatattggtatttatactacaatcat 971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  ccatttcattaacagaatcaatcgaggatacatatatattggtatttatactacaatcat 971

                                                                        
Query: 972  caccactccatccaactgcgcaaacacattttaatgaatttgtatcacaatattcaccaa 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  caccactccatccaactgcgcaaacacattttaatgaatttgtatcacaatattcaccaa 1031

                                                                        
Query: 1032 tgttacactctctataacatttaggtggaagttgtgattgagttgcatttactgttttaa 1091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tgttacactctctataacatttaggtggaagttgtgattgagttgcatttactgttttaa 1091

                                                                        
Query: 1092 caatttctttaatacttgaaaaataaattgtaaaaataccatttgatggtaataattcat 1151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 caatttctttaatacttgaaaaataaattgtaaaaataccatttgatggtaataattcat 1151

                                                                        
Query: 1152 taaaatagtatgaagattcaaatctgtatgatggaatggttggttcccaactaaaaaatg 1211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 taaaatagtatgaagattcaaatctgtatgatggaatggttggttcccaactaaaaaatg 1211

                                                                        
Query: 1212 gtaccgtataaaaatcttgagaattaagtccaatatcatttccccacattattaattttt 1271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 gtaccgtataaaaatcttgagaattaagtccaatatcatttccccacattattaattttt 1271

                                                                        
Query: 1272 tatttactctatcaatataaatattaactttaattgtagaacatgttgggtcatatttca 1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 tatttactctatcaatataaatattaactttaattgtagaacatgttgggtcatatttca 1331

                                                                        
Query: 1332 aattactattaaatnnnnnnntatttcttgatgatgatgggtaacatgaaaaacatgaag 1391
            ||||||||||||||       |||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 aattactattaaataaaaaaatatttcttgatgatgatgggtaacatgaaaaacatgaag 1391

                                                                        
Query: 1392 gtaaagttccagataaattattaaactttaaatctaaagacattgaattcattgtacaat 1451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 gtaaagttccagataaattattaaactttaaatctaaagacattgaattcattgtacaat 1451

                                           
Query: 1452 aacttgaatcaactgttccnatatctttttt 1482
            |||||||||||||||||||||||||||||||
Sbjct: 1452 aacttgaatcaactgttccnatatctttttt 1482


 Score =  737 bits (372), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaatcatgtattatcacatacnctattgaagaagttaaaacagcaagagaatatcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caagaatcatgtattatcacatacnctattgaagaagttaaaacagcaagagaatatcga 60

                                                                       
Query: 61  tgggcaggtttagatttaacattggataaagattcaatcaaaatttcagtctcaattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgggcaggtttagatttaacattggataaagattcaatcaaaatttcagtctcaattaaa 120

                                                                       
Query: 121 aattacacttttaatagtgttttaaataatcttcaattaagatttgaatcattagtaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattacacttttaatagtgttttaaataatcttcaattaagatttgaatcattagtaggt 180

                                                                       
Query: 181 gataataatagaaatactcaagataataatgaatgtaataatagagatactcaagttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gataataatagaaatactcaagataataatgaatgtaataatagagatactcaagttgat 240

                                                                       
Query: 241 acaagtgaaatcgataagaatcaattattaaattatttaacaataccaagaaatcaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaagtgaaatcgataagaatcaattattaaattatttaacaataccaagaaatcaaaaa 300

                                                                       
Query: 301 gttttatatggtcgtttcattaatagagttattagtgattcaagacaaacttttataaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttttatatggtcgtttcattaatagagttattagtgattcaagacaaacttttataaca 360

                          
Query: 361 acctctgtaattcca 375
           |||||||||||||||
Sbjct: 361 acctctgtaattcca 375


 Score =  543 bits (274), Expect = e-154
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 396 acaatcagtgatcattggattaaatttaccacattgtaaaaatgaatgtttaattgatcc 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acaatcagtgatcattggattaaatttaccacattgtaaaaatgaatgtttaattgatcc 455

                                                                       
Query: 456 tgatttctctgttttggtttcatcatcttatcaagaatgttcaagtgatttaaataatgg 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgatttctctgttttggtttcatcatcttatcaagaatgttcaagtgatttaaataatgg 515

                                                                       
Query: 516 tggtcgtgccagttgggtattacctgttgctatcgttgtaccatgtgttgctgtagtttt 575
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tggtcgtgccagttgggtattacctgttgctatcgttgtaccatgtgttgctgtagtttt 575

                                                                       
Query: 576 aataattataatcggtgctgtaatatatagaaaaaatagaatggcaattttagttgcaaa 635
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aataattataatcggtgctgtaatatatagaaaaaatagaatggcaattttagttgcaaa 635

                                             
Query: 636 gaataaatattcatttagtcttagaaaaatgtct 669
           ||||||||||||||||||||||||||||||||||
Sbjct: 636 gaataaatattcatttagtcttagaaaaatgtct 669


>Contig-U12072-1 (Contig-U12072-1Q) /CSM_Contig/Contig-U12072-1Q.Seq.d
          Length = 1475

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 410  ttggattaaatttaccacattgtaaaaatgaatgtttaattgatcctgatttctctgttt 469
            |||| ||||||||||||||||||  |||||||||||| |||||||| |||||||||||||
Sbjct: 1120 ttggtttaaatttaccacattgttcaaatgaatgttttattgatccagatttctctgttt 1061

             
Query: 470  t 470
            |
Sbjct: 1060 t 1060


 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 100  aaaatttcagtctcaattaaaaatta 125
            ||||||||||| ||||||||||||||
Sbjct: 1427 aaaatttcagtttcaattaaaaatta 1402


>Contig-U11534-1 (Contig-U11534-1Q) /CSM_Contig/Contig-U11534-1Q.Seq.d
          Length = 1418

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                     
Query: 414  attaaatttaccacattgtaaaaatgaatgtttaattgatcctgatttctctgtttt 470
            ||||||| | |||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct: 1152 attaaatcttccacattgtaaaaaagaatgtttgattgatcctgatttttcagtttt 1208


 Score = 34.2 bits (17), Expect = 0.42
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 309  tggtcgtttcattaatagagt 329
            ||||||||| |||||||||||
Sbjct: 1059 tggtcgttttattaatagagt 1079


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,991
Number of Sequences: 6905
Number of extensions: 29991
Number of successful extensions: 3409
Number of sequences better than 10.0: 347
length of query: 1506
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1490
effective length of database: 5,564,391
effective search space: 8290942590
effective search space used: 8290942590
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA 
Query= Contig-U10835-1 (Contig-U10835-1Q) /CSM_Contig/Contig-U10835-1Q.Seq.d
         (1506 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ339857) Dictyostelium discoideum cDNA clone:dda10m17, 3' ...  1098   0.0    2
(BJ439937) Dictyostelium discoideum cDNA clone:ddv42j04, 3' ...   698   0.0    2
(BJ407013) Dictyostelium discoideum cDNA clone:dds37n03, 3' ...   636   0.0    2
(BJ405281) Dictyostelium discoideum cDNA clone:dds31m05, 3' ...   200   3e-85  4
(BJ443645) Dictyostelium discoideum cDNA clone:ddv53j18, 3' ...   281   1e-78  2
(BJ406037) Dictyostelium discoideum cDNA clone:dds33m24, 3' ...    82   2e-16  2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    82   4e-15  11
(AU271361) Dictyostelium discoideum gamete cDNA clone:FC-IC0...    82   9e-15  2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    74   1e-10  8
(BJ357746) Dictyostelium discoideum cDNA clone:dda64h13, 3' ...    66   2e-10  3
(BJ444292) Dictyostelium discoideum cDNA clone:ddv55l20, 3' ...    66   2e-10  3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    50   2e-08  16
(BJ443697) Dictyostelium discoideum cDNA clone:ddv53f21, 3' ...    58   4e-08  3
(BJ404658) Dictyostelium discoideum cDNA clone:dds29p04, 3' ...    58   4e-08  3
(BJ446393) Dictyostelium discoideum cDNA clone:ddv62g17, 3' ...    58   5e-08  3
(BJ383981) Dictyostelium discoideum cDNA clone:ddc47i20, 3' ...    66   4e-07  2
(BJ442278) Dictyostelium discoideum cDNA clone:ddv49k10, 3' ...    62   5e-07  2
(BJ438000) Dictyostelium discoideum cDNA clone:ddv36e03, 3' ...    62   5e-07  2
(BJ442878) Dictyostelium discoideum cDNA clone:ddv51a10, 3' ...    62   5e-07  2
(BJ440817) Dictyostelium discoideum cDNA clone:ddv44g21, 3' ...    50   5e-06  2
(CP000728) Clostridium botulinum F str. Langeland, complete ...    44   5e-06  19
(C84850) Dictyostelium discoideum slug cDNA, clone SSG785.         40   7e-06  4
(BJ444079) Dictyostelium discoideum cDNA clone:ddv55m02, 3' ...    54   9e-05  2
(BJ403717) Dictyostelium discoideum cDNA clone:dds26f01, 3' ...    42   2e-04  3
(AF482397) Dictyostelium discoideum ABC transporter AbcG20 (...    46   2e-04  3
(AU038127) Dictyostelium discoideum slug cDNA, clone SSH307.       60   3e-04  1
(AU037492) Dictyostelium discoideum slug cDNA, clone SSD703.       60   3e-04  1
(BJ443263) Dictyostelium discoideum cDNA clone:ddv52l08, 3' ...    60   3e-04  1
(BJ383498) Dictyostelium discoideum cDNA clone:ddc53b10, 3' ...    60   3e-04  1
(BJ348759) Dictyostelium discoideum cDNA clone:dda34d07, 3' ...    60   3e-04  1
(BJ440994) Dictyostelium discoideum cDNA clone:ddv45i10, 3' ...    54   4e-04  2
(BJ436382) Dictyostelium discoideum cDNA clone:ddv31b05, 3' ...    54   4e-04  2
(BJ407552) Dictyostelium discoideum cDNA clone:dds38m22, 3' ...    54   7e-04  2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    58   0.001  1
(BJ353154) Dictyostelium discoideum cDNA clone:dda49m01, 3' ...    58   0.001  1
(BJ438460) Dictyostelium discoideum cDNA clone:ddv37b06, 3' ...    40   0.001  3
(BJ353626) Dictyostelium discoideum cDNA clone:dda50l21, 3' ...    36   0.001  4
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.009  17
(BJ440481) Dictyostelium discoideum cDNA clone:ddv43g22, 3' ...    54   0.016  1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    44   0.020  21
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    44   0.021  22
(AG866837) Oryza sativa Indica Group genomic DNA, BAC end se...    36   0.023  3
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    44   0.025  11
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.031  15
(BJ323460) Dictyostelium discoideum cDNA clone:dda10m17, 5' ...    36   0.038  3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    40   0.040  12
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen...    36   0.042  21
(CP000727) Clostridium botulinum A str. Hall, complete genome.     44   0.064  22
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    30   0.068  17
(AC114106) Rattus norvegicus clone CH230-21N11, *** SEQUENCI...    42   0.071  8
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.072  23
(AX344558) Sequence 9 from Patent WO0200932.                       36   0.074  11
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    44   0.092  22
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.098  15
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    44   0.100  22
(AL049613) Human DNA sequence from clone RP1-231N13 on chrom...    34   0.15   8
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    42   0.15   19
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    38   0.17   21
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.23   16
(AB174636) Macaca fascicularis brain cDNA, clone: QtrA-18374.      50   0.25   1
(AC153705) Bos taurus clone CH240-24D5, WORKING DRAFT SEQUEN...    50   0.25   1
(AC173994) Bos taurus clone CH240-90G10, WORKING DRAFT SEQUE...    50   0.25   1
(AC171113) Bos taurus clone CH240-255F14, WORKING DRAFT SEQU...    50   0.25   1
(DN530648) 1319395 MARC 7BOV Bos taurus cDNA 5', mRNA sequence.    50   0.25   1
(DN529221) 1317859 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    50   0.25   1
(BJ440846) Dictyostelium discoideum cDNA clone:ddv44l24, 3' ...    50   0.25   1
(BJ437626) Dictyostelium discoideum cDNA clone:ddv34i19, 3' ...    50   0.25   1
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.25   12
(AX344564) Sequence 15 from Patent WO0200932.                      38   0.30   12
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.37   14
(AZ682840) ENTKJ59TR Entamoeba histolytica Sheared DNA Entam...    42   0.37   2
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    34   0.39   11
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.41   15
(AU263670) Dictyostelium discoideum vegetative cDNA clone:VS...    36   0.44   3
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.44   13
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.46   11
(AC216914) Populus trichocarpa clone POP036-E01, complete se...    32   0.49   8
(AC097803) Rattus norvegicus clone CH230-23D22, *** SEQUENCI...    48   0.53   2
(AC095163) Rattus norvegicus clone CH230-8K20, WORKING DRAFT...    48   0.53   2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.56   22
(DX528636) GH_MBb0041M03f GH_MBb Gossypium hirsutum genomic ...    42   0.57   2
(AL592044) Human DNA sequence from clone RP13-407F1 on chrom...    40   0.60   8
(AC123216) Rattus norvegicus clone CH230-303C11, *** SEQUENC...    40   0.69   8
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    32   0.69   14
(AF474339) Dictyostelium discoideum ABC transporter ABCC.7 (...    38   0.71   2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.79   16
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    36   0.84   14
(DE188991) Bombyx mori genomic DNA, Fosmid clone:RO0346-M07_R.     42   0.95   2
(BV606709) S216P61588RD11.T0 Masuku Pan troglodytes troglody...    48   0.98   1
(BV605902) S215P60739FE7.T0 Clara Pan troglodytes troglodyte...    48   0.98   1
(AL034557) Plasmodium falciparum MAL4P1.                           48   0.98   1
(AP000943) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    48   0.98   1
(AP001361) Homo sapiens genomic DNA, chromosome 11q14 clone:...    48   0.98   1
(AP000670) Homo sapiens genomic DNA, chromosome 11q14 clone:...    48   0.98   1
(AC178472) Strongylocentrotus purpuratus clone R3-3035A8, WO...    48   0.98   1
(AM633257) Entamoeba dispar GSS, clone dispar99g08.q1k.            48   0.98   1
(EG980721) GLL075_G02_002 Cyamopsis tetragonoloba (L.) Taub ...    48   0.98   1
(CK111456) Q023G10 Populus dormant bud cDNA library Populus ...    48   0.98   1
(BW643917) Dugesia ryukyuensis mRNA, clone: Dr_sW_028_N02, 5...    48   0.98   1
(BW637303) Dugesia ryukyuensis mRNA, clone: Dr_sW_008_B14, 5...    48   0.98   1

>(BJ339857) Dictyostelium discoideum cDNA clone:dda10m17, 3' end,
            single read.
          Length = 716

 Score = 1098 bits (554), Expect(2) = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Minus


Query: 792  tacattgtattgaaacatttgttatggtattttgaattaatggacaattttgattatcaa 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  tacattgtattgaaacatttgttatggtattttgaattaatggacaattttgattatcaa 657


Query: 852  tgctaactattaaattattatgagaatttgaaaaccaaccatataaagttatatcaccac 911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  tgctaactattaaattattatgagaatttgaaaaccaaccatataaagttatatcaccac 597


Query: 912  ccatttcattaacagaatcaatcgaggatacatatatattggtatttatactacaatcat 971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  ccatttcattaacagaatcaatcgaggatacatatatattggtatttatactacaatcat 537


Query: 972  caccactccatccaactgcgcaaacacattttaatgaatttgtatcacaatattcaccaa 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  caccactccatccaactgcgcaaacacattttaatgaatttgtatcacaatattcaccaa 477


Query: 1032 tgttacactctctataacatttaggtggaagttgtgattgagttgcatttactgttttaa 1091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476  tgttacactctctataacatttaggtggaagttgtgattgagttgcatttactgttttaa 417


Query: 1092 caatttctttaatacttgaaaaataaattgtaaaaataccatttgatggtaataattcat 1151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416  caatttctttaatacttgaaaaataaattgtaaaaataccatttgatggtaataattcat 357


Query: 1152 taaaatagtatgaagattcaaatctgtatgatggaatggttggttcccaactaaaaaatg 1211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356  taaaatagtatgaagattcaaatctgtatgatggaatggttggttcccaactaaaaaatg 297


Query: 1212 gtaccgtataaaaatcttgagaattaagtccaatatcatttccccacattattaattttt 1271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296  gtaccgtataaaaatcttgagaattaagtccaatatcatttccccacattattaattttt 237


Query: 1272 tatttactctatcaatataaatattaactttaattgtagaacatgttgggtcatatttca 1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236  tatttactctatcaatataaatattaactttaattgtagaacatgttgggtcatatttca 177


Query: 1332 aattactattaaat 1345
            ||||||||||||||
Sbjct: 176  aattactattaaat 163

 Score =  256 bits (129), Expect(2) = 0.0
 Identities = 132/132 (100%)
 Strand = Plus / Minus


Query: 1353 tatttcttgatgatgatgggtaacatgaaaaacatgaaggtaaagttccagataaattat 1412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155  tatttcttgatgatgatgggtaacatgaaaaacatgaaggtaaagttccagataaattat 96


Query: 1413 taaactttaaatctaaagacattgaattcattgtacaataacttgaatcaactgttccna 1472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95   taaactttaaatctaaagacattgaattcattgtacaataacttgaatcaactgttccna 36


Query: 1473 tatcttttttat 1484
            ||||||||||||
Sbjct: 35   tatcttttttat 24

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,817,988,585
Number of extensions: 116502000
Number of successful extensions: 10056197
Number of sequences better than 10.0: 228
Length of query: 1506
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1482
Effective length of database: 97,308,875,965
Effective search space: 144211754180130
Effective search space used: 144211754180130
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10835-1 (Contig-U10835-1Q) /CSM_Contig/Contig-U10835-1Q.Seq.d
         (1506 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...   172   2e-41
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   164   8e-39
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...   143   1e-32
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...   140   1e-31
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...   138   6e-31
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...   135   3e-30
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...   133   2e-29
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...   128   6e-28
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...   127   8e-28
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...   124   9e-27
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...   123   2e-26
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...   120   1e-25
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso...   115   3e-24
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...   108   4e-22
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...    93   2e-17
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...    75   6e-12
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    72   7e-11
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...    70   3e-10
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    69   3e-10
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    67   1e-09
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    65   6e-09
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso...    65   8e-09
AC117080_18(AC117080|pid:none) Dictyostelium discoideum chromoso...    62   4e-08
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    62   5e-08
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    59   4e-07
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...    57   2e-06
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    51   1e-04
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...    49   6e-04
AC115605_7(AC115605|pid:none) Dictyostelium discoideum chromosom...    48   8e-04
(Q54LN2) RecName: Full=Putative vacuolar protein sorting-associa...    44   0.020
AC169177_15(AC169177|pid:none) Medicago truncatula chromosome 7 ...    41   0.13
AY634612_1(AY634612|pid:none) Lycopersicon parviflorum Hcr9-Avr4...    40   0.17
AL591496_16(AL591496|pid:none) Mouse DNA sequence from clone RP2...    40   0.17
(P69998) RecName: Full=Gap junction delta-2 protein; AltName: Fu...    40   0.17
AL591496_15(AL591496|pid:none) Mouse DNA sequence from clone RP2...    40   0.17
AF163834_1(AF163834|pid:none) Dictyostelium discoideum developme...    40   0.22
AC169177_11(AC169177|pid:none) Medicago truncatula chromosome 7 ...    40   0.29
AJ002237_2(AJ002237|pid:none) Lycopersicon esculentum haplotype ...    40   0.29
AB030032_12(AB030032|pid:none) Actinobacillus actinomycetemcomit...    40   0.29
(Q54UC2) RecName: Full=Conserved oligomeric Golgi complex subuni...    39   0.38
(Q54DF0) RecName: Full=Putative uncharacterized protein DDB_G029...    39   0.38
AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ...    39   0.65
AE014187_261(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.65
AC116305_13(AC116305|pid:none) Dictyostelium discoideum chromoso...    39   0.65
AC116979_76(AC116979|pid:none) Dictyostelium discoideum chromoso...    39   0.65
CU179680_325(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    38   0.84
AF528597_1(AF528597|pid:none) Arabidopsis thaliana ecotype An-2 ...    38   1.1
AL844508_201(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.1
AL844509_676(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.1
CP000598_32(CP000598|pid:none) Ostreococcus lucimarinus CCE9901 ...    38   1.1
AF177674_1(AF177674|pid:none) Arabidopsis thaliana cultivar Wass...    38   1.1
AC116984_28(AC116984|pid:none) Dictyostelium discoideum chromoso...    37   1.4
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A...    37   1.4
AC169177_22(AC169177|pid:none) Medicago truncatula chromosome 7 ...    37   1.4
AJ002236_5(AJ002236|pid:none) Lycopersicon pimpinellifolium Cf-9...    37   1.9
AL844507_268(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.9
AY634611_1(AY634611|pid:none) Lycopersicon chmielewskii Hcr9-Avr...    37   1.9
AC140031_16(AC140031|pid:none) Medicago truncatula clone mth2-24...    37   1.9
AC137994_39(AC137994|pid:none) Medicago truncatula clone mth2-23...    37   1.9
AC125479_18(AC125479|pid:none) Medicago truncatula clone mth2-7f...    37   2.5
AF528603_1(AF528603|pid:none) Arabidopsis thaliana ecotype Jl-3 ...    37   2.5
FB916197_1(FB916197|pid:none) Sequence 135470 from Patent WO2008...    37   2.5
AC124958_16(AC124958|pid:none) Medicago truncatula clone mth2-18...    37   2.5
AC169177_29(AC169177|pid:none) Medicago truncatula chromosome 7 ...    37   2.5
AC186754_18(AC186754|pid:none) Musa balbisiana clone MBP_81C12, ...    36   3.2
CR388178_1(CR388178|pid:none) Zebrafish DNA sequence from clone ...    36   3.2
AC186955_20(AC186955|pid:none) Musa acuminata clone MA4_82I11, c...    36   3.2
DQ314735_1(DQ314735|pid:none) Danio rerio crumbs-like protein 1 ...    36   3.2
EU142909_1(EU142909|pid:none) Oreochromis niloticus x Oreochromi...    36   3.2
BX537264_1(BX537264|pid:none) Zebrafish DNA sequence from clone ...    36   3.2
CR847569_2(CR847569|pid:none) Zebrafish DNA sequence from clone ...    36   3.2
BC163555_1(BC163555|pid:none) Danio rerio crumbs homolog 1 (Dros...    36   3.2
AE014186_76(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    36   3.2
X56811_1(X56811|pid:none) D.melanogaster Serrate mRNA for EGF-li...    36   4.2
(P18168) RecName: Full=Serrate protein; AltName: Full=Protein be...    36   4.2
A45237_1(A45237|pid:none) Sequence 1 from Patent WO9518230.  &A5...    36   4.2
AF059183_1(AF059183|pid:none) Morone americana connexin 35 (Cx35...    36   4.2
EF523383_1(EF523383|pid:none) Plasmodium falciparum multidrug re...    36   4.2
AE014188_279(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   4.2
AY596304_1(AY596304|pid:none) Chlamydomonas reinhardtii unknown ...    36   4.2
AF401036_1(AF401036|pid:none) Lycopersicon pimpinellifolium rece...    36   4.2
Z15037_1(Z15037|pid:none) Aplysia californica mRNA for HSP70A, p...    36   4.2
AB220161_1(AB220161|pid:none) Tetrahymena thermophila BNI2 mRNA ...    36   4.2
AY128478_1(AY128478|pid:none) Drosophila melanogaster RE42104 fu...    36   4.2
CR940353_710(CR940353|pid:none) Theileria annulata strain Ankara...    36   4.2
S16148(S16148;S16878;A36666)gene serrate protein precursor - fru...    36   4.2
AP008207_360(AP008207|pid:none) Oryza sativa (japonica cultivar-...    36   4.2
AJ002235_5(AJ002235|pid:none) Lycopersicon hirsutum Cf-4 resista...    36   4.2
AE016877_2488(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    36   4.2
AE014297_4255(AE014297|pid:none) Drosophila melanogaster chromos...    36   4.2
AC124958_12(AC124958|pid:none) Medicago truncatula clone mth2-18...    36   4.2
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el...    36   4.2
BC168665_1(BC168665|pid:none) Rattus norvegicus platelet endothe...    36   4.2
AC116957_23(AC116957|pid:none) Dictyostelium discoideum chromoso...    36   4.2
AF528680_1(AF528680|pid:none) Arabidopsis lyrata CLAVATA2 (CLV2)...    36   4.2
(Q54PP6) RecName: Full=Myb-like protein Y;                             36   4.2
AY634617_1(AY634617|pid:none) Lycopersicon hirsutum cultivar LA1...    36   4.2
AP004800_19(AP004800|pid:none) Oryza sativa Japonica Group genom...    35   5.5
AF499438_1(AF499438|pid:none) Caenorhabditis briggsae notch-like...    35   5.5
AE014187_324(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.5
AE001362_61(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    35   5.5
AJ002236_2(AJ002236|pid:none) Lycopersicon pimpinellifolium Cf-9...    35   5.5
AB010266_2(AB010266|pid:none) Mus musculus Creb-rp, Tnx, Cyp21 g...    35   5.5
(Q54QG0) RecName: Full=Bifunctional glycosyltransferase pgtA; Al...    35   5.5
AE014186_94(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    35   5.5
AJ002235_2(AJ002235|pid:none) Lycopersicon hirsutum Cf-4 resista...    35   5.5
BC121467_1(BC121467|pid:none) Xenopus tropicalis NEL-like 1, mRN...    35   5.5
AP008207_368(AP008207|pid:none) Oryza sativa (japonica cultivar-...    35   5.5
AJ002235_4(AJ002235|pid:none) Lycopersicon hirsutum Cf-4 resista...    35   5.5
AP006535_2(AP006535|pid:none) Lotus japonicus genomic DNA, chrom...    35   5.5
AL844504_221(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.1
AL929353_66(AL929353|pid:none) Plasmodium falciparum strain 3D7,...    35   7.1
AE014188_428(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.1
AF279134_2(AF279134|pid:none) Dictyostelium discoideum bifunctio...    35   7.1
A48825(A48825)Notch homolog Motch protein - mouse (fragment)           35   7.1
S18188(S18188)notch protein homolog - rat                              35   7.1
AB100603_1(AB100603|pid:none) Mus musculus Notch1 gene for trans...    35   7.1
FN357299_15(FN357299|pid:none) Schistosoma mansoni genome sequen...    35   7.1
AC116982_14(AC116982|pid:none) Dictyostelium discoideum chromoso...    35   7.1
AL844507_137(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.1
AB095016_1(AB095016|pid:none) Cynops pyrrhogaster Notch-1 mRNA f...    35   7.1
AB100603_2(AB100603|pid:none) Mus musculus Notch1 gene for trans...    35   7.1
(Q01705) RecName: Full=Neurogenic locus notch homolog protein 1;...    35   7.1
AC079679_1(AC079679|pid:none) Arabidopsis thaliana chromosome 1 ...    35   7.1
AF508809_1(AF508809|pid:none) Mus musculus notch 1 protein mRNA,...    35   7.1
AM904775_1(AM904775|pid:none) Ministeria vibrans partial mRNA fo...    35   7.1
(Q9WU60) RecName: Full=Attractin; AltName: Full=Protein mahogany...    35   9.3
(P46530) RecName: Full=Neurogenic locus notch homolog protein 1;...    35   9.3
(P78509) RecName: Full=Reelin;          EC=3.4.21.-; Flags: Prec...    35   9.3
AC004512_16(AC004512|pid:none) Arabidopsis thaliana chromosome 1...    35   9.3
AY650356_1(AY650356|pid:none) Macaca fascicularis reelin mRNA, p...    35   9.3
AY161283_1(AY161283|pid:none) Heterodera glycines heat shock pro...    35   9.3
AF528591_1(AF528591|pid:none) Arabidopsis thaliana ecotype Colum...    35   9.3
AY805407_1(AY805407|pid:none) Danio rerio notch1b mRNA, complete...    35   9.3
BC084953_1(BC084953|pid:none) Xenopus laevis X-Serrate-1 protein...    35   9.3
AF318605_1(AF318605|pid:none) Heterodera glycines heat shock pro...    35   9.3
AB038388_1(AB038388|pid:none) Rattus norvegicus Atrn mRNA for at...    35   9.3
AF008227_1(AF008227|pid:none) Drosophila melanogaster odd Oz pro...    35   9.3
FN357551_8(FN357551|pid:none) Schistosoma mansoni genome sequenc...    35   9.3
(Q54X25) RecName: Full=Integrator complex subunit 5-like protein;      35   9.3
EF566886_2(EF566886|pid:none) Hydractinia symbiolongicarpus CnPo...    35   9.3
AE014296_3877(AE014296|pid:none) Drosophila melanogaster chromos...    35   9.3
BC141054_1(BC141054|pid:none) Mus musculus attractin, mRNA (cDNA...    35   9.3
A54148(A54148)odz protein - fruit fly (Drosophila sp.)                 35   9.3
AL833771_1(AL833771|pid:none) Mouse DNA sequence from clone RP23...    35   9.3
(Q54L50) RecName: Full=Putative uncharacterized protein DDB_G028...    35   9.3
AC124958_6(AC124958|pid:none) Medicago truncatula clone mth2-18i...    35   9.3
AE008384_1840(AE008384|pid:none) Methanosarcina mazei strain Goe...    35   9.3
AE014296_3878(AE014296|pid:none) Drosophila melanogaster chromos...    35   9.3

>AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromosome 2
            map 4657875-4914984 strain AX4, complete sequence.
          Length = 1501

 Score =  172 bits (437), Expect = 2e-41
 Identities = 91/218 (41%), Positives = 139/218 (63%), Gaps = 2/218 (0%)
 Frame = +1

Query: 16   ITYXIEE-VKTAREYRWAGLDLTLDKDSIKISVSIKNYTFNSVLNNLQLRFESLVGD-NN 189
            IT  IEE V ++++Y +AG++L +D+  +KISVSIKNY + S LN LQLRF S  G+ +N
Sbjct: 1280 ITLIIEEIVNSSKKYTFAGMNLEIDQGGLKISVSIKNYQYESALNTLQLRFLSSAGETSN 1339

Query: 190  RNTQDNNECNNRDTQVDTSEIDKNQLLNYLTIPRNQKVLYGRFINRVISDSRQTFITTSV 369
             +++++N CN  +++ DTS ID N  LNY++I +N K+L GRFIN+V+SD R TF+++ +
Sbjct: 1340 LDSEEDNSCNQHESESDTSNIDPNLTLNYISISKNSKILSGRFINKVVSDGRSTFMSSEI 1399

Query: 370  IPXXXXXXKQSVIIGLNLPHCKNECLIDPDFSVLVSSSYQECSSDLNNGGRASWXXXXXX 549
            +         ++++GLNLPHC NEC IDPDFSVLVS +++  SS  N+  + +W
Sbjct: 1400 V--KDLSSSSTIVVGLNLPHCSNECFIDPDFSVLVSPNFE--SSCGNSETKKNWVIPVAV 1455

Query: 550  XXXXXXXXXXXXXXXXXYRKNRMAILVAKNKYSFSLRK 663
                             YRK+R +I +   K SFS+++
Sbjct: 1456 VVPVVCVSLLTLGAILIYRKHRYSIRLFTMKKSFSVKQ 1493

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
 Frame = -1

Query: 1470 GTVDSSYCTMNSMSLDLKFNNLSGTLPSCFSCYPSSS-RNIFLFNSNLKYDPT---CSTI 1303
            GT+  SYC++++ +     N  +G +P+CF C+  ++  N FL N     D     C  I
Sbjct: 360  GTIPQSYCSISNTNFSN--NGFTGLIPNCFICFMKNNLENNFLGNYFTNKDSPNSYCGAI 417

Query: 1302 KVNIYIDRVNKKLIMWGNDIGLNSQDFYTVPFFSWEPTIPSYRFESSYYFNELLPSNGIF 1123
            + ++ +     K+ M G ++G N  +  T+P   WE  IPS RF +SY ++    +N +F
Sbjct: 418  EPSLRMG--TGKIYMEGRNLGFNGSNIVTIPNLQWEVEIPSTRFSASYTYS----TNQLF 471

Query: 1122 TIYFSS 1105
            +I+F +
Sbjct: 472  SIFFQN 477

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/72 (40%), Positives = 38/72 (52%)
 Frame = -1

Query: 1050 CYRECNIGEYCDTNSLKCVCAVGWSGDDCSINTNIYVSSIDSVNEMGGDITLYGWFSNSH 871
            C   C     C+ +  KC C   W  D+C+   + Y+SSID     GG +T+YGWFSN H
Sbjct: 1062 CSVNCLNNGVCNYDIGKCKCTPNWKSDNCTTPIH-YLSSIDPCTTSGGQVTIYGWFSNQH 1120

Query: 870  NNLIVSIDNQNC 835
             NL V+I    C
Sbjct: 1121 INLTVTIGGVEC 1132

 Score = 35.0 bits (79), Expect = 7.1
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
 Frame = -1

Query: 1053 KCYRECNIGEYCDTNSLKCVCAVGWSGDDCSIN-------TNIYVSSIDSVNEMGG---- 907
            +C  +CN    CDT   KC C     G+ C +N        NI  S + S N   G
Sbjct: 989  RCQSDCNGHGICDTTIGKCNCDSSHQGESCELNLITCPSKNNIECSGLGSCNNQTGICSC 1048

Query: 906  -DITLYGWFS------NSHNNLIVSIDNQNCPLIQN 820
             D T Y   S      N  NN + + D   C    N
Sbjct: 1049 NDGTTYSDCSGILCSVNCLNNGVCNYDIGKCKCTPN 1084

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,788,902,173
Number of extensions: 30816938
Number of successful extensions: 135087
Number of sequences better than 10.0: 149
Number of HSP's gapped: 113697
Number of HSP's successfully gapped: 180
Length of query: 502
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 369
Effective length of database: 614,796,874
Effective search space: 226860046506
Effective search space used: 226860046506
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.84  gvh: 0.20  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: plasma membrane

>> prediction for Contig-U10835-1 is cyt
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0