Contig-U10832-1 |
Contig ID |
Contig-U10832-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1838 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
268261 |
End point |
266328 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
12 |
Number of EST |
21 |
Link to clone list |
U10832 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.22 |
Homology vs DNA |
Query= Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Contig-U10832-1Q.Seq.d (1848 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ443377) Dictyostelium discoideum cDNA clone:ddv52a22, 3' ... 1380 0.0 1 (BJ428384) Dictyostelium discoideum cDNA clone:ddv11a23, 3' ... 1350 0.0 3 (BJ430679) Dictyostelium discoideum cDNA clone:ddv8d11, 3' e... 1281 0.0 1 (BJ376181) Dictyostelium discoideum cDNA clone:ddc21c15, 3' ... 1279 0.0 1 (BJ398861) Dictyostelium discoideum cDNA clone:dds2b20, 3' e... 1275 0.0 2 (BJ433166) Dictyostelium discoideum cDNA clone:ddv20p24, 3' ... 1243 0.0 1 (BJ373327) Dictyostelium discoideum cDNA clone:ddc2g22, 3' e... 1219 0.0 1 (BJ382578) Dictyostelium discoideum cDNA clone:ddc45o03, 3' ... 1195 0.0 1 (BJ433448) Dictyostelium discoideum cDNA clone:ddv21m21, 3' ... 1160 0.0 1 (BJ342163) Dictyostelium discoideum cDNA clone:dda9b22, 3' e... 1053 0.0 1 (BJ414954) Dictyostelium discoideum cDNA clone:ddv20p24, 5' ... 632 0.0 6 (BJ368077) Dictyostelium discoideum cDNA clone:ddc45o03, 5' ... 632 0.0 3 (BJ412396) Dictyostelium discoideum cDNA clone:ddv8d11, 5' e... 632 0.0 3 (BJ410231) Dictyostelium discoideum cDNA clone:ddv11a23, 5' ... 632 0.0 3 (BJ363564) Dictyostelium discoideum cDNA clone:ddc27f12, 5' ... 632 0.0 3 (BJ359832) Dictyostelium discoideum cDNA clone:ddc2g22, 5' e... 632 0.0 3 (BJ387463) Dictyostelium discoideum cDNA clone:dds2b20, 5' e... 607 0.0 3 (BJ325114) Dictyostelium discoideum cDNA clone:dda9b22, 5' e... 607 0.0 4 (BJ415237) Dictyostelium discoideum cDNA clone:ddv21m21, 5' ... 583 0.0 3 (AU266864) Dictyostelium discoideum vegetative cDNA clone:VS... 642 0.0 2 (BJ378111) Dictyostelium discoideum cDNA clone:ddc27f12, 3' ... 418 e-163 2 (EX264013) 1444190_5_B20_080 PY06 Carica papaya cDNA, mRNA s... 60 5e-21 5 (EX276490) 1457326_5_F04_012 PY06 Carica papaya cDNA, mRNA s... 60 7e-21 5 (EU850439) Adineta vaga dihydrogenpyrimidine dehydrogenase g... 70 6e-16 2 (DE354297) Bombyx mori genomic DNA, BAC clone:BET_075_N24. 82 8e-16 3 (FC609639) CAXS4550.rev CAXS Lottia gigantea from head, foot... 64 2e-15 3 (FC694533) CAXX4462.rev CAXX Lottia gigantea from male gonad... 64 2e-15 3 (FC619988) CAXT10287.rev CAXT Lottia gigantea from mantle Lo... 64 2e-15 3 (FC758630) CBBN10869.rev CBBN Lottia gigantea 3,4,5,6.5d Lar... 64 2e-15 3 (FC685821) CAXX18468.rev CAXX Lottia gigantea from male gona... 64 3e-15 3 (CN900224) 010723ABAB001279HT (ABAB) Pacific Rose spur buds ... 58 5e-15 3 (CV149724) Mdst6006p22.y1 Mdst Malus x domestica cDNA clone ... 58 8e-15 3 (EX258327) 1438477_5_D19_078 PY06 Carica papaya cDNA, mRNA s... 52 3e-14 6 (EU652316) Adineta vaga dihydrogenpyrimidine dehydrogenase g... 62 1e-13 2 (FD757201) Afi04_164_D05_C014.g1 Aristolochia fimbriata flow... 68 4e-13 3 (EU652318) Philodina roseola 7TM protein 66, histone H4, his... 80 5e-13 2 (CV129575) Mdst6004b24.y1 Mdst Malus x domestica cDNA clone ... 58 8e-13 2 (CD524415) ku99g03.y1 Strongyloides ratti PA female naive pA... 88 1e-12 1 (FC819736) Sr_pAMT7_015l11_T7 S. ratti mixed stage pAMP Stro... 88 1e-12 1 (BE124732) EST393767 GVN Medicago truncatula cDNA clone pGVN... 46 2e-12 4 (EU652317) Philodina roseola GTP binding protein, beta prime... 80 2e-12 5 (CF069572) EST670293 MTUS Medicago truncatula cDNA clone MTU... 46 3e-12 4 (CO495739) G.h.fbr-sw05129 G.h.fbr-sw Gossypium hirsutum cDN... 52 2e-11 3 (FD496058) Ltu01b_146_H10_C012.g1 Liriodendron Flower Bud Li... 48 5e-11 3 (DT755897) EST1189746 Aquilegia cDNA library Aquilegia formo... 52 7e-11 4 (FC814098) Sr_pASP6_016m03_SP6 S. ratti mixed stage pAMP Str... 82 9e-11 1 (CN926945) 000529AEPA002582HT (AEPA) Pinkie expanding leaf M... 58 1e-10 3 (CN926079) 000430AEPA001138HT (AEPA) Pinkie expanding leaf M... 58 1e-10 3 (EH043068) AS1RN30P1B08.ab1 Healthy Roots (RN) Arachis steno... 50 1e-10 4 (FK151406) XABT180735.g1 Gateway compatible cien cDNA librar... 66 1e-10 3 (CN492593) Mdfw2011m21.y1 Mdfw Malus x domestica cDNA clone ... 58 2e-10 3 (CV150714) Mdst6009f02.y1 Mdst Malus x domestica cDNA clone ... 58 2e-10 2 (CV627418) Mdst6011n15.y1 Mdst Malus x domestica cDNA clone ... 58 2e-10 3 (FK163093) XABT188110.g1 Gateway compatible cien cDNA librar... 66 2e-10 3 (FF797199) XABT90864.rev Gateway compatible cien cDNA librar... 66 3e-10 3 (EX479411) EST_lsal_evj_789135 lsalevj mixed_tissue_mixed_st... 72 3e-10 2 (BW049899) Ciona intestinalis cDNA, clone:cibd068n06, 5' end... 66 3e-10 3 (CV129560) Mdst6004n11.y1 Mdst Malus x domestica cDNA clone ... 58 3e-10 3 (EU850441) Philodina roseola dihydrogenpyrimidine dehydrogen... 80 3e-10 1 (CU468277) M.truncatula DNA sequence *** SEQUENCING CANCELLE... 46 9e-10 10 (CD164154) ML1-0085T-L234-A02-U.B ML1-0085 Schistosoma manso... 58 2e-09 3 (CN928571) 000601AEPA005140HT (AEPA) Pinkie expanding leaf M... 50 8e-09 2 (FF783375) XABT81795.rev Gateway compatible cien cDNA librar... 60 1e-08 3 (CU024887) M.truncatula DNA sequence from clone MTH2-174G4 o... 46 2e-08 8 (EH700510) CCIS12676.b1_G01.ab1 CCI(LMS) chicory Cichorium i... 42 2e-08 3 (CN892122) 010603AAXA004569HT (AAXA) Royal Gala 126 DAFB fru... 58 6e-08 3 (EY814484) PT11-C1-900-056-B08-CT.F Poncirus trifoliata leaf... 48 7e-08 4 (FD759625) Afi04_202_D03_C014.g1 Aristolochia fimbriata flow... 50 7e-08 3 (FD757089) Afi04_162_A06_C014.g1 Aristolochia fimbriata flow... 50 7e-08 3 (EY814728) PT11-C1-900-053-H07-CT.F Poncirus trifoliata leaf... 48 8e-08 4 (CV659917) tak20b10.y1 Hydra EST UCI 6 Hydra magnipapillata ... 72 8e-08 1 (CN768608) taf69b03.y1 Hydra EST Darmstadt I Hydra magnipapi... 72 8e-08 1 (CN625967) tae53d01.y1 Hydra EST Darmstadt I Hydra magnipapi... 72 8e-08 1 (EU850440) Philodina roseola rho GTPase activating protein, ... 64 2e-07 4 (AM642142) Entamoeba dispar GSS, clone dispar91g01.q1k. 54 4e-07 3 (FF926426) CBWU65144.g1 Yutaka Satou unpublished cDNA librar... 66 4e-07 2 (EX255253) PY05080X1G10.f1 PY05 Carica papaya cDNA, mRNA seq... 50 5e-07 3 (FF926425) CBWU65144.b1 Yutaka Satou unpublished cDNA librar... 66 5e-07 2 (AV846920) Ciona intestinalis cDNA, clone:rcieg14n24, 3' end... 66 6e-07 2 (EX255422) PY05070X1D12.f1 PY05 Carica papaya cDNA, mRNA seq... 50 6e-07 3 (FF953763) CBWU82837.g1 Yutaka Satou unpublished cDNA librar... 66 8e-07 2 (FF963367) CBWU89122.g1 Yutaka Satou unpublished cDNA librar... 66 8e-07 2 (AP010602) Lotus japonicus genomic DNA, chromosome 1, clone:... 42 8e-07 5 (BW409007) Ciona intestinalis cDNA, clone:cima805a09, 3'end,... 66 8e-07 2 (BH132662) ENTOG61TR Entamoeba histolytica Sheared DNA Entam... 48 1e-06 2 (EX412336) GQ03612.B7_P17 GQ036 - Shoot tip - Active growth ... 54 1e-06 3 (FE636244) CBYY13421.g1 CBYY Panicum virgatum Kanlow crown P... 50 1e-06 2 (CD193205) MS1-0077U-A259-H07-U.B MS1-0077 Schistosoma manso... 50 1e-06 2 (EX388568) GQ03313.B7_C14 GQ033 - Terminal leader (Normalize... 54 1e-06 3 (AK114731) Ciona intestinalis cDNA, clone:cieg014n24, full i... 66 2e-06 2 (FG474709) 020211KALA006560HT (KALA) Dormant kiwifruit buds ... 56 2e-06 2 (EC775785) EST 12281 Guarana fruits cDNA library Paullinia c... 48 2e-06 3 (BU925878) sas83d10.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 52 3e-06 2 (EH708123) CCIS7440.b1_P11.ab1 CCI(LMS) chicory Cichorium in... 40 3e-06 3 (EL429546) CHCM8723.b1_E22.ab1 CHC(LMS) Texas blueweed Helia... 46 4e-06 3 (CD201912) MS1-0130U-A337-E08-U.B MS1-0130 Schistosoma manso... 66 5e-06 1 (CD111889) ME1-0021T-D074-H11-U.G ME1-0021 Schistosoma manso... 66 5e-06 1 (FE165671) LV_LO_RA039J19r Litopenaeus vannamei lymphoid org... 60 6e-06 2 (FD755471) Afi04_138_D04_C014.g1 Aristolochia fimbriata flow... 50 1e-05 2 (FE164937) LV_LO_RA037P13f Litopenaeus vannamei lymphoid org... 60 1e-05 2
>(BJ443377) Dictyostelium discoideum cDNA clone:ddv52a22, 3' end, single read. Length = 804
Score = 1380 bits (696), Expect = 0.0 Identities = 696/696 (100%) Strand = Plus / Minus
Query: 990 cttttaaaaatgatattcaattttggaaaaataataaatcaatggaaggtttatcagtta 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 804 cttttaaaaatgatattcaattttggaaaaataataaatcaatggaaggtttatcagtta 745
Query: 1050 aaactattacattaaattgtgtttgcatgggtattatatttttatatttattagataatg 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 744 aaactattacattaaattgtgtttgcatgggtattatatttttatatttattagataatg 685
Query: 1110 aaactagttatatgattttagcaagtagtggatttggatttttagttgaattttggaaat 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 aaactagttatatgattttagcaagtagtggatttggatttttagttgaattttggaaat 625
Query: 1170 taggtaaagcaatgacaattaaaattacatggatgacaagtttaccattaccaaaacgta 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 taggtaaagcaatgacaattaaaattacatggatgacaagtttaccattaccaaaacgta 565
Query: 1230 ttgaattcattaataaggatgaatacatgtcaaaaactaaacaatatgatgatatggcaa 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 ttgaattcattaataaggatgaatacatgtcaaaaactaaacaatatgatgatatggcaa 505
Query: 1290 tgaagtatttatcatggttactattcccattggttattggtacttccatttactcattat 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 tgaagtatttatcatggttactattcccattggttattggtacttccatttactcattat 445
Query: 1350 actatcacgagcataagagttggtattcttgggtagtttcaagtttagtacgtaccgttt 1409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 actatcacgagcataagagttggtattcttgggtagtttcaagtttagtacgtaccgttt 385
Query: 1410 acacttttgaattcattatgatgacaccacaattattcatcaattataaattaaaatcag 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 acacttttgaattcattatgatgacaccacaattattcatcaattataaattaaaatcag 325
Query: 1470 tttcacatttaccttggagagtattcatgtatcgtgctttgaatacctttatagatgatc 1529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 tttcacatttaccttggagagtattcatgtatcgtgctttgaatacctttatagatgatc 265
Query: 1530 tatttgctttcatcattaaaatgccattacttcatcgtttaagttgtcttcgtgatgata 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 tatttgctttcatcattaaaatgccattacttcatcgtttaagttgtcttcgtgatgata 205
Query: 1590 ttatctttatagtttatctctatcaaagatggatttatccagttgataaaaagagatcac 1649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 ttatctttatagtttatctctatcaaagatggatttatccagttgataaaaagagatcac 145
Query: 1650 attatggttctgaagaagctgaagaagtacaacaac 1685 |||||||||||||||||||||||||||||||||||| Sbjct: 144 attatggttctgaagaagctgaagaagtacaacaac 109
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,052,372,521 Number of extensions: 129325374 Number of successful extensions: 11004183 Number of sequences better than 10.0: 414 Length of query: 1848 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1824 Effective length of database: 97,308,875,965 Effective search space: 177491389760160 Effective search space used: 177491389760160 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.28 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
1 |
VF (FL, S) |
4 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
2 |
CF (FL, S) |
2 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |