Contig-U10832-1
Contig ID Contig-U10832-1
Contig update 2002.12.18
Contig sequence
>Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Contig-U10832-1Q.Seq.d
CATATTTTATCGCCAAAACGAAAAGTGAACTCATAATACACACAAAAATG
AATAATCAAGGCGGAGCTGTTGCAGCAAATGGCCAAAGACCACAAGCTCA
ACAACAACAACAACAAGGTGGTATAATGGGAATTATTTCAACATTAATTA
GATTTATGGCAATTTATTATATTGCAAGTTTTGCTTTTTCCAAATTTTTA
GGTACAGGTAATAATAATAATAATGGAGGTGTTGTTTTAAATAATAATAA
TGGTACTACAAATACATCAATACCATCAAATTCAGTTAGATTAGCAAATT
CATGGCCAGAAGGTATTGAATTTAATATGAAAGTTTATCTATCAACTTCA
AATGAAACTGTTGGAGATTGGTTAGTTTGGGAACAAGATAAATTATCTTA
TGATTGGAAAGATAGTAACACAATTCCAACTAAAAACATTACATTTGATA
CAACACCTTATTTACAAAATAATGGCTCATTATTCGCTCACATTATAACT
TCAAGACGTGCTTATTTAAATCAACCAAAATCACAATTACATAAAGTTCA
TCCATTAATTGTTTATTTACCAAAACCAAAACCAAAGGGTAAAAATTTAT
TAGAAGAAAAATCAAAAGATGAACCAGAAGTCGAATATGATCCAACTGAA
TTAATTTCATATTGGAAACCAACTTTATCATTACATCTTATTGTTGATCA
TACAATTTATCCACCTGATTCAATTCCAAAAGAAATAGTATCTTATTTTA
ATATAACAAATGGATTTTATTCGCCAATTATTTATTGTAATGAATTTTGG
TTATATAGAGAACATTTAAAACCAGTTAATGAAACAGTTAAACAATTAAG
TATTGAAATTAACTATTCATCAATGGGTTTATTTAAATGGCAATTACAAA
TTCAAATGCAAAAATCATTAGATATGCAAGAATCATTTGGT---------
-AATTGTATCAGTTTTACATACAATTTTTGAATTTTTAGCTTTTAAAAAT
GATATTCAATTTTGGAAAAATAATAAATCAATGGAAGGTTTATCAGTTAA
AACTATTACATTAAATTGTGTTTGCATGGGTATTATATTTTTATATTTAT
TAGATAATGAAACTAGTTATATGATTTTAGCAAGTAGTGGATTTGGATTT
TTAGTTGAATTTTGGAAATTAGGTAAAGCAATGACAATTAAAATTACATG
GATGACAAGTTTACCATTACCAAAACGTATTGAATTCATTAATAAGGATG
AATACATGTCAAAAACTAAACAATATGATGATATGGCAATGAAGTATTTA
TCATGGTTACTATTCCCATTGGTTATTGGTACTTCCATTTACTCATTATA
CTATCACGAGCATAAGAGTTGGTATTCTTGGGTAGTTTCAAGTTTAGTAC
GTACCGTTTACACTTTTGAATTCATTATGATGACACCACAATTATTCATC
AATTATAAATTAAAATCAGTTTCACATTTACCTTGGAGAGTATTCATGTA
TCGTGCTTTGAATACCTTTATAGATGATCTATTTGCTTTCATCATTAAAA
TGCCATTACTTCATCGTTTAAGTTGTCTTCGTGATGATATTATCTTTATA
GTTTATCTCTATCAAAGATGGATTTATCCAGTTGATAAAAAGAGATCACA
TTATGGTTCTGAAGAAGCTGAAGAAGTACAACAACAAGATAAAAAAGAAA
TTAAAGAAAAGGTTGAGGAGAGAGAGGAGGAAAAACAAGAAGAAGAAGAA
GAAGAAAAAGAAAAAGAGGAAGAATCAACATCATCTTCAAAAGTTACAAA
AAGAAAAACTAAAAAAGTTTAAAAAAAATAATAAAATATAATAATTTA

Gap gap included
Contig length 1838
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 268261
End point 266328
Strand (PLUS/MINUS) MINUS
Number of clones 12
Number of EST 21
Link to clone list U10832
List of clone(s)

est1=CHL516F,1,581
est2=AFE481F,2,1017
est3=CFA684F,2,575
est4=VFD742F,2,576
est5=VFJ896F,2,668
est6=CHC843F,9,577
est7=SFA873F,9,561
est8=VFF189F,9,580
est9=VFK187F,9,545
est10=VSG848F,505,942
est11=VFF189Z,1018,1754
est12=VHK681Z,1056,1860
est13=SFA873Z,1087,1772
est14=CFK158Z,1103,1760
est15=VFD742Z,1106,1856
est16=VFJ896Z,1122,1847
est17=CFA684Z,1137,1894
est18=CHL516Z,1145,1916
est19=VFK187Z,1160,1893
est20=AFE481Z,1221,1901
est21=CHC843Z,1424,1885
Translated Amino Acid sequence
YFIAKTKSELIIHTKMNNQGGAVAANGQRPQAQQQQQQGGIMGIISTLIRFMAIYYIASF
AFSKFLGTGNNNNNGGVVLNNNNGTTNTSIPSNSVRLANSWPEGIEFNMKVYLSTSNETV
GDWLVWEQDKLSYDWKDSNTIPTKNITFDTTPYLQNNGSLFAHIITSRRAYLNQPKSQLH
KVHPLIVYLPKPKPKGKNLLEEKSKDEPEVEYDPTELISYWKPTLSLHLIVDHTIYPPDS
IPKEIVSYFNITNGFYSPIIYCNEFWLYREHLKPVNETVKQLSIEINYSSMGLFKWQLQI
QMQKSLDMQESFG---

---IVSVLHTIFEFLAFKNDIQFWKNNKSMEGLSVKTITLNCVCMGIIFLYLLDNETSYM
ILASSGFGFLVEFWKLGKAMTIKITWMTSLPLPKRIEFINKDEYMSKTKQYDDMAMKYLS
WLLFPLVIGTSIYSLYYHEHKSWYSWVVSSLVRTVYTFEFIMMTPQLFINYKLKSVSHLP
WRVFMYRALNTFIDDLFAFIIKMPLLHRLSCLRDDIIFIVYLYQRWIYPVDKKRSHYGSE
EAEEVQQQDKKEIKEKVEEREEEKQEEEEEEKEKEEESTSSSKVTKRKTKKV*kk**nii
i


Translated Amino Acid sequence (All Frames)
Frame A:
hilspkrkvns*ytqk*iikaellqqmakdhklnnnnnkvv*welfqh*ldlwqfiilqv
llfpnf*vqviiiimevlf*iiimvlqihqyhqiqld*qihgqkvlnli*kfiyqlqmkl
leig*fgnkinylmigkivtqfqlktlhliqhliykimahysltl*lqdvli*inqnhny
ikfih*lfiyqnqnqrvkiy*kknqkmnqksnmiqln*fhignqlyhyillliiqfihli
qfqkk*ylili*qmdfirqlfivmnfgyieni*nqlmkqlnn*vlkltihqwvylngnyk
fkcknh*icknhl---

---ncisftynf*ifsf*k*ysilek**ingrfis*nyyiklclhgyyififir**n*ly
dfsk*wiwifs*ileir*sndn*nymddkftitkty*ih**g*ihvkn*ti**ygnevfi
mvtipigywyfhlliilsra*elvflgsfkfstyrlhf*ihyddttiihql*ikisftft
lesihvscfeylyr*sicfhh*naitssfklss**yylyslslskmdlss**keitlwf*
rs*rstttr*krn*rkg*gerggktrrrrrrkrkrgriniifksykkkn*kslkkiikyn
nl

Frame B:
ifyrqnek*thnthkne*srrsccskwpkttsstttttrwyngnyfnin*iygnllyckf
cffqifryr*****wrccfk***wyykyintikfs*iskfmarry*i*yeslsinfk*nc
wrlvslgtr*iil*ler**hnsn*khyi*yntlftk*wliirshynfktclfkstkitit
*sssinclftktktkg*kfirrkikr*trsri*sn*infiletnfiitsyc*synlst*f
nskrnsilf*ynkwilfanyll**ilvi*rtfkts**ns*tiky*n*lfingfi*maitn
snakiiryariiw---

---IVSVLHTIFEFLAFKNDIQFWKNNKSMEGLSVKTITLNCVCMGIIFLYLLDNETSYM
ILASSGFGFLVEFWKLGKAMTIKITWMTSLPLPKRIEFINKDEYMSKTKQYDDMAMKYLS
WLLFPLVIGTSIYSLYYHEHKSWYSWVVSSLVRTVYTFEFIMMTPQLFINYKLKSVSHLP
WRVFMYRALNTFIDDLFAFIIKMPLLHRLSCLRDDIIFIVYLYQRWIYPVDKKRSHYGSE
EAEEVQQQDKKEIKEKVEEREEEKQEEEEEEKEKEEESTSSSKVTKRKTKKV*kk**nii
i

Frame C:
YFIAKTKSELIIHTKMNNQGGAVAANGQRPQAQQQQQQGGIMGIISTLIRFMAIYYIASF
AFSKFLGTGNNNNNGGVVLNNNNGTTNTSIPSNSVRLANSWPEGIEFNMKVYLSTSNETV
GDWLVWEQDKLSYDWKDSNTIPTKNITFDTTPYLQNNGSLFAHIITSRRAYLNQPKSQLH
KVHPLIVYLPKPKPKGKNLLEEKSKDEPEVEYDPTELISYWKPTLSLHLIVDHTIYPPDS
IPKEIVSYFNITNGFYSPIIYCNEFWLYREHLKPVNETVKQLSIEINYSSMGLFKWQLQI
QMQKSLDMQESFG---

---lyqfyiqflnf*llkmifnfgkiinqwkvyqlkllh*ivfawvlyfyiy*imklvi*
f*qvvdldf*lnfgn*vkq*qlklhg*qvyhyqnvlnslirmntcqklnnmmiwq*siyh
gyyshwllvlpfthytitsirvgilg*fqv*yvpftllnsl**hhnyssiin*nqfhiyl
geyscivl*ipl*miyllsslkchyfiv*vvfvmilsl*fisikdgfiqlikrdhimvlk
klkkynnkikkklkkrlrrerrknkkkkkkkkkkrknqhhlqklqkeklkkfkknnki**
f

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10832-1 (Contig-U10832-1Q)
/CSM_Contig/Contig-U10832-1Q.Seq.d
(1848 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Conti... 2054 0.0
Contig-U02748-1 (Contig-U02748-1Q) /CSM_Contig/Conti... 50 9e-06
Contig-U09423-1 (Contig-U09423-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U14632-1 (Contig-U14632-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U11770-1 (Contig-U11770-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U11397-1 (Contig-U11397-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U06094-1 (Contig-U06094-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U05621-1 (Contig-U05621-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U09637-1 (Contig-U09637-1Q) /CSM_Contig/Conti... 36 0.13

>Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Contig-U10832-1Q.Seq.d
Length = 1848

Score = 2054 bits (1036), Expect = 0.0
Identities = 1066/1066 (100%)
Strand = Plus / Plus


Query: 618 gatgaaccagaagtcgaatatgatccaactgaattaatttcatattggaaaccaacttta 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gatgaaccagaagtcgaatatgatccaactgaattaatttcatattggaaaccaacttta 677


Query: 678 tcattacatcttattgttgatcatacaatttatccacctgattcaattccaaaagaaata 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcattacatcttattgttgatcatacaatttatccacctgattcaattccaaaagaaata 737


Query: 738 gtatcttattttaatataacaaatggattttattcgccaattatttattgtaatgaattt 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtatcttattttaatataacaaatggattttattcgccaattatttattgtaatgaattt 797


Query: 798 tggttatatagagaacatttaaaaccagttaatgaaacagttaaacaattaagtattgaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tggttatatagagaacatttaaaaccagttaatgaaacagttaaacaattaagtattgaa 857


Query: 858 attaactattcatcaatgggtttatttaaatggcaattacaaattcaaatgcaaaaatca 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attaactattcatcaatgggtttatttaaatggcaattacaaattcaaatgcaaaaatca 917


Query: 918 ttagatatgcaagaatcatttggtnnnnnnnnnnaattgtatcagttttacatacaattt 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ttagatatgcaagaatcatttggtnnnnnnnnnnaattgtatcagttttacatacaattt 977


Query: 978 ttgaatttttagcttttaaaaatgatattcaattttggaaaaataataaatcaatggaag 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 ttgaatttttagcttttaaaaatgatattcaattttggaaaaataataaatcaatggaag 1037


Query: 1038 gtttatcagttaaaactattacattaaattgtgtttgcatgggtattatatttttatatt 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 gtttatcagttaaaactattacattaaattgtgtttgcatgggtattatatttttatatt 1097


Query: 1098 tattagataatgaaactagttatatgattttagcaagtagtggatttggatttttagttg 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 tattagataatgaaactagttatatgattttagcaagtagtggatttggatttttagttg 1157


Query: 1158 aattttggaaattaggtaaagcaatgacaattaaaattacatggatgacaagtttaccat 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 aattttggaaattaggtaaagcaatgacaattaaaattacatggatgacaagtttaccat 1217


Query: 1218 taccaaaacgtattgaattcattaataaggatgaatacatgtcaaaaactaaacaatatg 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 taccaaaacgtattgaattcattaataaggatgaatacatgtcaaaaactaaacaatatg 1277


Query: 1278 atgatatggcaatgaagtatttatcatggttactattcccattggttattggtacttcca 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 atgatatggcaatgaagtatttatcatggttactattcccattggttattggtacttcca 1337


Query: 1338 tttactcattatactatcacgagcataagagttggtattcttgggtagtttcaagtttag 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 tttactcattatactatcacgagcataagagttggtattcttgggtagtttcaagtttag 1397


Query: 1398 tacgtaccgtttacacttttgaattcattatgatgacaccacaattattcatcaattata 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 tacgtaccgtttacacttttgaattcattatgatgacaccacaattattcatcaattata 1457


Query: 1458 aattaaaatcagtttcacatttaccttggagagtattcatgtatcgtgctttgaatacct 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 aattaaaatcagtttcacatttaccttggagagtattcatgtatcgtgctttgaatacct 1517


Query: 1518 ttatagatgatctatttgctttcatcattaaaatgccattacttcatcgtttaagttgtc 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 ttatagatgatctatttgctttcatcattaaaatgccattacttcatcgtttaagttgtc 1577


Query: 1578 ttcgtgatgatattatctttatagtttatctctatcaaagatggatttatccagttgata 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 ttcgtgatgatattatctttatagtttatctctatcaaagatggatttatccagttgata 1637


Query: 1638 aaaagagatcacattatggttctgaagaagctgaagaagtacaaca 1683
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 aaaagagatcacattatggttctgaagaagctgaagaagtacaaca 1683


Score = 896 bits (452), Expect = 0.0
Identities = 452/452 (100%)
Strand = Plus / Plus


Query: 117 ggtggtataatgggaattatttcaacattaattagatttatggcaatttattatattgca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggtggtataatgggaattatttcaacattaattagatttatggcaatttattatattgca 176


Query: 177 agttttgctttttccaaatttttaggtacaggtaataataataataatggaggtgttgtt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 agttttgctttttccaaatttttaggtacaggtaataataataataatggaggtgttgtt 236


Query: 237 ttaaataataataatggtactacaaatacatcaataccatcaaattcagttagattagca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttaaataataataatggtactacaaatacatcaataccatcaaattcagttagattagca 296


Query: 297 aattcatggccagaaggtattgaatttaatatgaaagtttatctatcaacttcaaatgaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aattcatggccagaaggtattgaatttaatatgaaagtttatctatcaacttcaaatgaa 356


Query: 357 actgttggagattggttagtttgggaacaagataaattatcttatgattggaaagatagt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 actgttggagattggttagtttgggaacaagataaattatcttatgattggaaagatagt 416


Query: 417 aacacaattccaactaaaaacattacatttgatacaacaccttatttacaaaataatggc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aacacaattccaactaaaaacattacatttgatacaacaccttatttacaaaataatggc 476


Query: 477 tcattattcgctcacattataacttcaagacgtgcttatttaaatcaaccaaaatcacaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcattattcgctcacattataacttcaagacgtgcttatttaaatcaaccaaaatcacaa 536


Query: 537 ttacataaagttcatccattaattgtttattt 568
||||||||||||||||||||||||||||||||
Sbjct: 537 ttacataaagttcatccattaattgtttattt 568


Score = 194 bits (98), Expect = 2e-49
Identities = 98/98 (100%)
Strand = Plus / Plus


Query: 1 catattttatcgccaaaacgaaaagtgaactcataatacacacaaaaatgaataatcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catattttatcgccaaaacgaaaagtgaactcataatacacacaaaaatgaataatcaag 60


Query: 61 gcggagctgttgcagcaaatggccaaagaccacaagct 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcggagctgttgcagcaaatggccaaagaccacaagct 98


Score = 40.1 bits (20), Expect = 0.008
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1829 taataaaatataataattta 1848
||||||||||||||||||||
Sbjct: 1829 taataaaatataataattta 1848


>Contig-U02748-1 (Contig-U02748-1Q) /CSM_Contig/Contig-U02748-1Q.Seq.d
Length = 550

Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus


Query: 236 tttaaataataataatggtactacaaata 264
|||||||||||||||||||| ||||||||
Sbjct: 470 tttaaataataataatggtagtacaaata 498


>Contig-U09423-1 (Contig-U09423-1Q) /CSM_Contig/Contig-U09423-1Q.Seq.d
Length = 597

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 206 aggtaataataataataatgg 226
|||||||||||||||||||||
Sbjct: 156 aggtaataataataataatgg 176


Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 240 aataataataatggt 254
|||||||||||||||
Sbjct: 163 aataataataatggt 177


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,535
Number of Sequences: 6905
Number of extensions: 59535
Number of successful extensions: 15521
Number of sequences better than 10.0: 1817
length of query: 1848
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1832
effective length of database: 5,564,391
effective search space: 10193964312
effective search space used: 10193964312
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.22
Homology vs DNA
Query= Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Contig-U10832-1Q.Seq.d
(1848 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ443377) Dictyostelium discoideum cDNA clone:ddv52a22, 3' ... 1380 0.0 1
(BJ428384) Dictyostelium discoideum cDNA clone:ddv11a23, 3' ... 1350 0.0 3
(BJ430679) Dictyostelium discoideum cDNA clone:ddv8d11, 3' e... 1281 0.0 1
(BJ376181) Dictyostelium discoideum cDNA clone:ddc21c15, 3' ... 1279 0.0 1
(BJ398861) Dictyostelium discoideum cDNA clone:dds2b20, 3' e... 1275 0.0 2
(BJ433166) Dictyostelium discoideum cDNA clone:ddv20p24, 3' ... 1243 0.0 1
(BJ373327) Dictyostelium discoideum cDNA clone:ddc2g22, 3' e... 1219 0.0 1
(BJ382578) Dictyostelium discoideum cDNA clone:ddc45o03, 3' ... 1195 0.0 1
(BJ433448) Dictyostelium discoideum cDNA clone:ddv21m21, 3' ... 1160 0.0 1
(BJ342163) Dictyostelium discoideum cDNA clone:dda9b22, 3' e... 1053 0.0 1
(BJ414954) Dictyostelium discoideum cDNA clone:ddv20p24, 5' ... 632 0.0 6
(BJ368077) Dictyostelium discoideum cDNA clone:ddc45o03, 5' ... 632 0.0 3
(BJ412396) Dictyostelium discoideum cDNA clone:ddv8d11, 5' e... 632 0.0 3
(BJ410231) Dictyostelium discoideum cDNA clone:ddv11a23, 5' ... 632 0.0 3
(BJ363564) Dictyostelium discoideum cDNA clone:ddc27f12, 5' ... 632 0.0 3
(BJ359832) Dictyostelium discoideum cDNA clone:ddc2g22, 5' e... 632 0.0 3
(BJ387463) Dictyostelium discoideum cDNA clone:dds2b20, 5' e... 607 0.0 3
(BJ325114) Dictyostelium discoideum cDNA clone:dda9b22, 5' e... 607 0.0 4
(BJ415237) Dictyostelium discoideum cDNA clone:ddv21m21, 5' ... 583 0.0 3
(AU266864) Dictyostelium discoideum vegetative cDNA clone:VS... 642 0.0 2
(BJ378111) Dictyostelium discoideum cDNA clone:ddc27f12, 3' ... 418 e-163 2
(EX264013) 1444190_5_B20_080 PY06 Carica papaya cDNA, mRNA s... 60 5e-21 5
(EX276490) 1457326_5_F04_012 PY06 Carica papaya cDNA, mRNA s... 60 7e-21 5
(EU850439) Adineta vaga dihydrogenpyrimidine dehydrogenase g... 70 6e-16 2
(DE354297) Bombyx mori genomic DNA, BAC clone:BET_075_N24. 82 8e-16 3
(FC609639) CAXS4550.rev CAXS Lottia gigantea from head, foot... 64 2e-15 3
(FC694533) CAXX4462.rev CAXX Lottia gigantea from male gonad... 64 2e-15 3
(FC619988) CAXT10287.rev CAXT Lottia gigantea from mantle Lo... 64 2e-15 3
(FC758630) CBBN10869.rev CBBN Lottia gigantea 3,4,5,6.5d Lar... 64 2e-15 3
(FC685821) CAXX18468.rev CAXX Lottia gigantea from male gona... 64 3e-15 3
(CN900224) 010723ABAB001279HT (ABAB) Pacific Rose spur buds ... 58 5e-15 3
(CV149724) Mdst6006p22.y1 Mdst Malus x domestica cDNA clone ... 58 8e-15 3
(EX258327) 1438477_5_D19_078 PY06 Carica papaya cDNA, mRNA s... 52 3e-14 6
(EU652316) Adineta vaga dihydrogenpyrimidine dehydrogenase g... 62 1e-13 2
(FD757201) Afi04_164_D05_C014.g1 Aristolochia fimbriata flow... 68 4e-13 3
(EU652318) Philodina roseola 7TM protein 66, histone H4, his... 80 5e-13 2
(CV129575) Mdst6004b24.y1 Mdst Malus x domestica cDNA clone ... 58 8e-13 2
(CD524415) ku99g03.y1 Strongyloides ratti PA female naive pA... 88 1e-12 1
(FC819736) Sr_pAMT7_015l11_T7 S. ratti mixed stage pAMP Stro... 88 1e-12 1
(BE124732) EST393767 GVN Medicago truncatula cDNA clone pGVN... 46 2e-12 4
(EU652317) Philodina roseola GTP binding protein, beta prime... 80 2e-12 5
(CF069572) EST670293 MTUS Medicago truncatula cDNA clone MTU... 46 3e-12 4
(CO495739) G.h.fbr-sw05129 G.h.fbr-sw Gossypium hirsutum cDN... 52 2e-11 3
(FD496058) Ltu01b_146_H10_C012.g1 Liriodendron Flower Bud Li... 48 5e-11 3
(DT755897) EST1189746 Aquilegia cDNA library Aquilegia formo... 52 7e-11 4
(FC814098) Sr_pASP6_016m03_SP6 S. ratti mixed stage pAMP Str... 82 9e-11 1
(CN926945) 000529AEPA002582HT (AEPA) Pinkie expanding leaf M... 58 1e-10 3
(CN926079) 000430AEPA001138HT (AEPA) Pinkie expanding leaf M... 58 1e-10 3
(EH043068) AS1RN30P1B08.ab1 Healthy Roots (RN) Arachis steno... 50 1e-10 4
(FK151406) XABT180735.g1 Gateway compatible cien cDNA librar... 66 1e-10 3
(CN492593) Mdfw2011m21.y1 Mdfw Malus x domestica cDNA clone ... 58 2e-10 3
(CV150714) Mdst6009f02.y1 Mdst Malus x domestica cDNA clone ... 58 2e-10 2
(CV627418) Mdst6011n15.y1 Mdst Malus x domestica cDNA clone ... 58 2e-10 3
(FK163093) XABT188110.g1 Gateway compatible cien cDNA librar... 66 2e-10 3
(FF797199) XABT90864.rev Gateway compatible cien cDNA librar... 66 3e-10 3
(EX479411) EST_lsal_evj_789135 lsalevj mixed_tissue_mixed_st... 72 3e-10 2
(BW049899) Ciona intestinalis cDNA, clone:cibd068n06, 5' end... 66 3e-10 3
(CV129560) Mdst6004n11.y1 Mdst Malus x domestica cDNA clone ... 58 3e-10 3
(EU850441) Philodina roseola dihydrogenpyrimidine dehydrogen... 80 3e-10 1
(CU468277) M.truncatula DNA sequence *** SEQUENCING CANCELLE... 46 9e-10 10
(CD164154) ML1-0085T-L234-A02-U.B ML1-0085 Schistosoma manso... 58 2e-09 3
(CN928571) 000601AEPA005140HT (AEPA) Pinkie expanding leaf M... 50 8e-09 2
(FF783375) XABT81795.rev Gateway compatible cien cDNA librar... 60 1e-08 3
(CU024887) M.truncatula DNA sequence from clone MTH2-174G4 o... 46 2e-08 8
(EH700510) CCIS12676.b1_G01.ab1 CCI(LMS) chicory Cichorium i... 42 2e-08 3
(CN892122) 010603AAXA004569HT (AAXA) Royal Gala 126 DAFB fru... 58 6e-08 3
(EY814484) PT11-C1-900-056-B08-CT.F Poncirus trifoliata leaf... 48 7e-08 4
(FD759625) Afi04_202_D03_C014.g1 Aristolochia fimbriata flow... 50 7e-08 3
(FD757089) Afi04_162_A06_C014.g1 Aristolochia fimbriata flow... 50 7e-08 3
(EY814728) PT11-C1-900-053-H07-CT.F Poncirus trifoliata leaf... 48 8e-08 4
(CV659917) tak20b10.y1 Hydra EST UCI 6 Hydra magnipapillata ... 72 8e-08 1
(CN768608) taf69b03.y1 Hydra EST Darmstadt I Hydra magnipapi... 72 8e-08 1
(CN625967) tae53d01.y1 Hydra EST Darmstadt I Hydra magnipapi... 72 8e-08 1
(EU850440) Philodina roseola rho GTPase activating protein, ... 64 2e-07 4
(AM642142) Entamoeba dispar GSS, clone dispar91g01.q1k. 54 4e-07 3
(FF926426) CBWU65144.g1 Yutaka Satou unpublished cDNA librar... 66 4e-07 2
(EX255253) PY05080X1G10.f1 PY05 Carica papaya cDNA, mRNA seq... 50 5e-07 3
(FF926425) CBWU65144.b1 Yutaka Satou unpublished cDNA librar... 66 5e-07 2
(AV846920) Ciona intestinalis cDNA, clone:rcieg14n24, 3' end... 66 6e-07 2
(EX255422) PY05070X1D12.f1 PY05 Carica papaya cDNA, mRNA seq... 50 6e-07 3
(FF953763) CBWU82837.g1 Yutaka Satou unpublished cDNA librar... 66 8e-07 2
(FF963367) CBWU89122.g1 Yutaka Satou unpublished cDNA librar... 66 8e-07 2
(AP010602) Lotus japonicus genomic DNA, chromosome 1, clone:... 42 8e-07 5
(BW409007) Ciona intestinalis cDNA, clone:cima805a09, 3'end,... 66 8e-07 2
(BH132662) ENTOG61TR Entamoeba histolytica Sheared DNA Entam... 48 1e-06 2
(EX412336) GQ03612.B7_P17 GQ036 - Shoot tip - Active growth ... 54 1e-06 3
(FE636244) CBYY13421.g1 CBYY Panicum virgatum Kanlow crown P... 50 1e-06 2
(CD193205) MS1-0077U-A259-H07-U.B MS1-0077 Schistosoma manso... 50 1e-06 2
(EX388568) GQ03313.B7_C14 GQ033 - Terminal leader (Normalize... 54 1e-06 3
(AK114731) Ciona intestinalis cDNA, clone:cieg014n24, full i... 66 2e-06 2
(FG474709) 020211KALA006560HT (KALA) Dormant kiwifruit buds ... 56 2e-06 2
(EC775785) EST 12281 Guarana fruits cDNA library Paullinia c... 48 2e-06 3
(BU925878) sas83d10.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 52 3e-06 2
(EH708123) CCIS7440.b1_P11.ab1 CCI(LMS) chicory Cichorium in... 40 3e-06 3
(EL429546) CHCM8723.b1_E22.ab1 CHC(LMS) Texas blueweed Helia... 46 4e-06 3
(CD201912) MS1-0130U-A337-E08-U.B MS1-0130 Schistosoma manso... 66 5e-06 1
(CD111889) ME1-0021T-D074-H11-U.G ME1-0021 Schistosoma manso... 66 5e-06 1
(FE165671) LV_LO_RA039J19r Litopenaeus vannamei lymphoid org... 60 6e-06 2
(FD755471) Afi04_138_D04_C014.g1 Aristolochia fimbriata flow... 50 1e-05 2
(FE164937) LV_LO_RA037P13f Litopenaeus vannamei lymphoid org... 60 1e-05 2

>(BJ443377) Dictyostelium discoideum cDNA clone:ddv52a22, 3' end,
single read.
Length = 804

Score = 1380 bits (696), Expect = 0.0
Identities = 696/696 (100%)
Strand = Plus / Minus


Query: 990 cttttaaaaatgatattcaattttggaaaaataataaatcaatggaaggtttatcagtta 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttttaaaaatgatattcaattttggaaaaataataaatcaatggaaggtttatcagtta 745


Query: 1050 aaactattacattaaattgtgtttgcatgggtattatatttttatatttattagataatg 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaactattacattaaattgtgtttgcatgggtattatatttttatatttattagataatg 685


Query: 1110 aaactagttatatgattttagcaagtagtggatttggatttttagttgaattttggaaat 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaactagttatatgattttagcaagtagtggatttggatttttagttgaattttggaaat 625


Query: 1170 taggtaaagcaatgacaattaaaattacatggatgacaagtttaccattaccaaaacgta 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taggtaaagcaatgacaattaaaattacatggatgacaagtttaccattaccaaaacgta 565


Query: 1230 ttgaattcattaataaggatgaatacatgtcaaaaactaaacaatatgatgatatggcaa 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgaattcattaataaggatgaatacatgtcaaaaactaaacaatatgatgatatggcaa 505


Query: 1290 tgaagtatttatcatggttactattcccattggttattggtacttccatttactcattat 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaagtatttatcatggttactattcccattggttattggtacttccatttactcattat 445


Query: 1350 actatcacgagcataagagttggtattcttgggtagtttcaagtttagtacgtaccgttt 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actatcacgagcataagagttggtattcttgggtagtttcaagtttagtacgtaccgttt 385


Query: 1410 acacttttgaattcattatgatgacaccacaattattcatcaattataaattaaaatcag 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacttttgaattcattatgatgacaccacaattattcatcaattataaattaaaatcag 325


Query: 1470 tttcacatttaccttggagagtattcatgtatcgtgctttgaatacctttatagatgatc 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcacatttaccttggagagtattcatgtatcgtgctttgaatacctttatagatgatc 265


Query: 1530 tatttgctttcatcattaaaatgccattacttcatcgtttaagttgtcttcgtgatgata 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatttgctttcatcattaaaatgccattacttcatcgtttaagttgtcttcgtgatgata 205


Query: 1590 ttatctttatagtttatctctatcaaagatggatttatccagttgataaaaagagatcac 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttatctttatagtttatctctatcaaagatggatttatccagttgataaaaagagatcac 145


Query: 1650 attatggttctgaagaagctgaagaagtacaacaac 1685
||||||||||||||||||||||||||||||||||||
Sbjct: 144 attatggttctgaagaagctgaagaagtacaacaac 109

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,052,372,521
Number of extensions: 129325374
Number of successful extensions: 11004183
Number of sequences better than 10.0: 414
Length of query: 1848
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1824
Effective length of database: 97,308,875,965
Effective search space: 177491389760160
Effective search space used: 177491389760160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Contig-U10832-1Q.Seq.d
(1848 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY064127_1(AY064127|pid:none) Arabidopsis thaliana AT5g08500/MAH... 323 e-116
AP008210_891(AP008210|pid:none) Oryza sativa (japonica cultivar-... 317 e-115
AB006697_6(AB006697|pid:none) Arabidopsis thaliana genomic DNA, ... 323 e-112
EU968184_1(EU968184|pid:none) Zea mays clone 316348 unknown mRNA. 321 e-112
BX548156_9(BX548156|pid:none) Oryza sativa genomic DNA, chromoso... 317 e-109
AK317745_1(AK317745|pid:none) Arabidopsis thaliana AT5G23575 mRN... 323 e-107
T24228(T24228) hypothetical protein R166.2 - Caenorhabditis eleg... 282 3e-91
AB045223_1(AB045223|pid:none) Homo sapiens CRR9 mRNA for cisplat... 278 2e-85
(Q5R7B1) RecName: Full=Cleft lip and palate transmembrane protei... 277 3e-85
(A2VE61) RecName: Full=Cleft lip and palate transmembrane protei... 273 8e-84
BC166290_1(BC166290|pid:none) Xenopus tropicalis hypothetical pr... 278 1e-83
(Q5ZKJ0) RecName: Full=Cleft lip and palate transmembrane protei... 276 3e-83
CP000589_183(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 267 1e-82
(Q8BXA5) RecName: Full=Cleft lip and palate transmembrane protei... 274 1e-82
BC026562_1(BC026562|pid:none) Mus musculus CLPTM1-like, mRNA (cD... 274 1e-82
AK156203_1(AK156203|pid:none) Mus musculus activated spleen cDNA... 274 2e-81
AP007164_121(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 244 3e-75
EU652318_6(EU652318|pid:none) Philodina roseola 7TM protein 66, ... 283 2e-74
(Q6DEL2) RecName: Full=Cleft lip and palate transmembrane protei... 282 3e-74
BC154188_1(BC154188|pid:none) Danio rerio cleft lip and palate a... 282 3e-74
EU850441_9(EU850441|pid:none) Philodina roseola dihydrogenpyrimi... 281 6e-74
AM494957_13(AM494957|pid:none) Leishmania braziliensis chromosom... 261 7e-74
AK223553_1(AK223553|pid:none) Homo sapiens mRNA for cleft lip an... 278 5e-73
AK316094_1(AK316094|pid:none) Homo sapiens cDNA, FLJ78993 comple... 278 5e-73
AC006615_4(AC006615|pid:none) Caenorhabditis elegans cosmid C36B... 278 5e-73
AY892180_1(AY892180|pid:none) Synthetic construct Homo sapiens c... 278 5e-73
AK293314_1(AK293314|pid:none) Homo sapiens cDNA FLJ59465 complet... 278 5e-73
(O96005) RecName: Full=Cleft lip and palate transmembrane protei... 278 5e-73
AY889720_1(AY889720|pid:none) Synthetic construct Homo sapiens c... 278 5e-73
CQ834664_1(CQ834664|pid:none) Sequence 535 from Patent WO2004058... 278 5e-73
CQ834662_1(CQ834662|pid:none) Sequence 533 from Patent WO2004058... 278 6e-73
T24897(T24897)hypothetical protein T13H5.2 - Caenorhabditis eleg... 268 7e-73
Z66524_10(Z66524|pid:none) Caenorhabditis elegans Cosmid T13H5, ... 268 7e-73
(Q2NL17) RecName: Full=Cleft lip and palate transmembrane protei... 277 8e-73
EU850440_6(EU850440|pid:none) Philodina roseola rho GTPase activ... 277 1e-72
(Q8VBZ3) RecName: Full=Cleft lip and palate transmembrane protei... 275 4e-72
AK148080_1(AK148080|pid:none) Mus musculus B16 F10Y cells cDNA, ... 275 4e-72
AK304480_1(AK304480|pid:none) Homo sapiens cDNA FLJ58081 complet... 275 5e-72
FN318018_1(FN318018|pid:none) Schistosoma japonicum isolate Anhu... 274 9e-72
FN318017_1(FN318017|pid:none) Schistosoma japonicum isolate Anhu... 273 2e-71
CT005271_5(CT005271|pid:none) Leishmania major strain Friedlin, ... 250 4e-71
EU850439_9(EU850439|pid:none) Adineta vaga dihydrogenpyrimidine ... 270 1e-70
AE014134_743(AE014134|pid:none) Drosophila melanogaster chromoso... 265 5e-69
CR382130_647(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 242 4e-68
BC016399_1(BC016399|pid:none) Homo sapiens CLPTM1-like, mRNA (cD... 232 1e-67
AE014298_1936(AE014298|pid:none) Drosophila melanogaster chromos... 258 5e-67
CP001325_447(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 251 8e-65
AM920435_1259(AM920435|pid:none) Penicillium chrysogenum Wiscons... 249 2e-64
AE014186_364(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 243 2e-62
CU640366_585(CU640366|pid:none) Podospora anserina genomic DNA c... 238 7e-61
BX294020_32(BX294020|pid:none) Neurospora crassa DNA linkage gro... 234 6e-60
AL832953_1(AL832953|pid:none) Homo sapiens mRNA; cDNA DKFZp666M1... 195 4e-48
AK128462_1(AK128462|pid:none) Homo sapiens cDNA FLJ46605 fis, cl... 184 9e-45
AY812023_1(AY812023|pid:none) Schistosoma japonicum SJCHGC06164 ... 181 6e-44
CR940347_71(CR940347|pid:none) Theileria annulata strain Ankara ... 177 1e-42
FN357394_14(FN357394|pid:none) Schistosoma mansoni genome sequen... 164 8e-41
FN357886_6(FN357886|pid:none) Schistosoma mansoni genome sequenc... 146 3e-33
BT038958_1(BT038958|pid:none) Zea mays full-length cDNA clone ZM... 124 2e-26
BC118433_1(BC118433|pid:none) Bos taurus CLPTM1-like, mRNA (cDNA... 76 7e-24
AK152410_1(AK152410|pid:none) Mus musculus bone marrow macrophag... 103 3e-20
EF215362_1(EF215362|pid:none) Callithrix jacchus clone C02-42.3_... 86 5e-15
AM910991_287(AM910991|pid:none) Plasmodium knowlesi strain H chr... 86 6e-15
BC118864_1(BC118864|pid:none) Xenopus tropicalis hypothetical pr... 58 2e-12
AY915532_1(AY915532|pid:none) Schistosoma japonicum SJCHGC07472 ... 73 3e-11
(P20147) RecName: Full=Heat shock 90 kDa protein homolog; Flags:... 39 0.49
EU016567_14(EU016567|pid:none) Uncultured marine microorganism H... 30 1.2
BX293980_271(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 37 2.4
DQ532045_1(DQ532045|pid:none) Aristolochia pentandra tRNA-Lys (t... 36 4.1
FM992689_205(FM992689|pid:none) Candida dubliniensis CD36 chromo... 35 7.0
AF030694_1(AF030694|pid:none) Plasmodium falciparum strain Dd2 h... 35 7.0
AJ248285_105(AJ248285|pid:none) Pyrococcus abyssi complete genom... 35 7.0

>AY064127_1(AY064127|pid:none) Arabidopsis thaliana AT5g08500/MAH20_6
mRNA, complete cds. &AY143924_1(AY143924|pid:none)
Length = 593

Score = 323 bits (828), Expect(2) = e-116
Identities = 154/241 (63%), Positives = 192/241 (79%), Gaps = 4/241 (1%)
Frame = +2

Query: 956 VSVLHTIFEFLAFKNDIQFWKNNKSMEGLSVKTITLNCVCMGIIFLYLLDNETSYMILAS 1135
VS+LH++F+FLAFKNDIQFW NKSMEGLS K++ LN +C +IFLYLLDN+TS+MILAS
Sbjct: 337 VSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFICQFVIFLYLLDNDTSWMILAS 396

Query: 1136 SGFGFLVEFWKLGKAMTIKITWMTSLPLPKRIEFINKDEYMS-KTKQYDDMAMKYLSWLL 1312
SG G +EFWK+GKAM I++ +P R+ F +++ Y S KTK+YDD+A+K+LS++L
Sbjct: 397 SGVGVCIEFWKIGKAMRIEVDRSGMIP---RLRFHDRESYASNKTKEYDDIAIKFLSYVL 453

Query: 1313 FPLVIGTSIYSLYYHEHKSWYSWVVSSLVRTVYTFEFIMMTPQLFINYKLKSVSHLPWRV 1492
LVIG SIYSL Y HKSWYSW++SSL VY F FIMM PQLFINYKLKSV+HLPWR
Sbjct: 454 LLLVIGLSIYSLAYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQ 513

Query: 1493 FMYRALNTFIDDLFAFIIKMPLLHRLSCLRDDIIFIVYLYQRWIYPVDKKRSH---YGSE 1663
Y+ LNT IDDLFAF+IKMP+LHRLS RDD+IF++YLYQRW+YPVDK R + +G E
Sbjct: 514 MTYKFLNTIIDDLFAFVIKMPILHRLSVFRDDVIFLIYLYQRWVYPVDKTRVNEFGFGGE 573

Query: 1664 E 1666
+
Sbjct: 574 D 574

Score = 121 bits (304), Expect(2) = e-116
Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 29/246 (11%)
Frame = +3

Query: 291 LANSWPEGIEFNMKVYLSTSNETVGDW-----LVWEQDKLSYDWKDSNTIPTKNITFDTT 455
+ N + +G +M YLS E D+ L W + + Y +I TK++T+ +
Sbjct: 65 MTNLFHKGESLDMWFYLS-EQEKFNDFGNDRALYWHETNIPYAVWTPESIRTKSLTYYPS 123

Query: 456 PYLQNNGSLFAHIITSRRAYL-------NQPKSQLHKVHPLIVYXXXXXXXXXXXXXXXS 614
LQNNGSL+AHI +R + QP + + H + Y
Sbjct: 124 ETLQNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAVATYFPKQKKNKKKSLLGSP 183

Query: 615 KD----EPEVEYD-----------PTELISYWKPTLSLHLIVDHTIYPPDSIPKEIVSYF 749
KD EPEVE P E IS WKP ++++L+ D T Y + +P I +
Sbjct: 184 KDSDESEPEVEKVGDKKSDPKEEVPVEWISLWKPNVTINLVDDFTHYSQNGVPPNIAPHL 243

Query: 750 NI--TNGFYSPIIYCNEFWLYREHLKPVNETVKQLSIEINYSSMGLFKWQLQIQMQKSLD 923
+ T G Y P IY NEFWL R+ PVNETV +L + + S + + KWQL Q+ +S
Sbjct: 244 LVEPTTGNYYPTIYFNEFWLLRDKFIPVNETVSELPLNLEISPISMMKWQLFQQVDQSFQ 303

Query: 924 MQESFG 941
MQ S+G
Sbjct: 304 MQRSYG 309

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,425,430,266
Number of extensions: 45583131
Number of successful extensions: 96583
Number of sequences better than 10.0: 71
Number of HSP's gapped: 96407
Number of HSP's successfully gapped: 128
Length of query: 616
Length of database: 1,040,966,779
Length adjustment: 135
Effective length of query: 481
Effective length of database: 608,388,304
Effective search space: 292634774224
Effective search space used: 292634774224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.72 gvh: 0.45 alm: 0.27 top: 0.27 tms: 0.07 mit: 0.25 mip: 0.16
nuc: 0.04 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.01 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: mitochondrial
24.0 %: nuclear
12.0 %: cytoplasmic
12.0 %: Golgi
12.0 %: endoplasmic reticulum
4.0 %: vacuolar

>> prediction for Contig-U10832-1 is mit

VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 2
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0