Contig-U01710-1
Contig ID Contig-U01710-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Contig-U01710-1Q.Seq.d
AAAAAAGACATGAAATTAATAATAAAAATTATATTTATTATATTTTTAAT
TAAAAAAATAATTGGATTTGAAGTACATATAATTAAATATAGTAATATAT
TATGTAAAGGAGAATTATTATTTACAATTGGTAGTACAAATTGTTCAAGA
TATTCATACTTTCAAAAAGGAGCAGGTGGTAAATTAGCAATCACANAAGT
TAATAATCAAGATCAATGTTCAATCGAACGAGATATAACAGAATTTGTAC
AAACCAAACAATGTTATTTAAACACTGATGGTACATCATATCAATATATC
ATAAACGATTCAGAGTTTAATC----------GTTTAATCCAAGAAATAT
AGANACCTATTGTAATGAAGTAAATTATTTTAATTGNGAAAATTATTTCA
TAAATTCTNATAGAAATAAAACATGTATTAAAATGAATTTTGGTAATGAT
CCCATTAAAATAAGAAACGTCTTCAAATGATAATAGTAATAATAGTACAA
CAATTAGATATCAAAGGAGAGAATGTATTGGTAAAGATGGTATGACAATT
AATGTTTATGAATGTTTAACAAGTGATTGTAAACCGCAATCATGTATTTT
AAAACAAACATATCCTTCAAATAGTACAAATTGTGATAATTTCAAATCCT
TAAAAATGTTTAATTTCCTCACTGATTCAAATCCAATCAATCAAACTGTA
AATTATACAACTCCTTCATTTTCTTTTGATTCTCAATTATCTTCATTATC
ATCATCATCATCATCAAATGACTTTGATTCATCTAGTTCTTTTTTAAATA
TTAATATTATTTCAACAATTGTATCATTATTAATTTTATTAATATCACTT
TGAAAATTAAAAATTAAATATTAAAAATAAAAATTAAAAATTAAAAATTA
AAAAAAAAAA

Gap gap included
Contig length 900
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4647014
End point 4646115
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U01710
List of clone(s)

est1=SSF282F,1,323
est2=SSB639E,324,902
est3=SSF282Z,401,898
Translated Amino Acid sequence
KKDMKLIIKIIFIIFLIKKIIGFEVHIIKYSNILCKGELLFTIGSTNCSRYSYFQKGAGG
KLAITXVNNQDQCSIERDITEFVQTKQCYLNTDGTSYQYIINDSEFN---

---FNPRNIXTYCNEVNYFNXENYFINSXRNKTCIKMNFGNDPIKIRNVFK******ynn
*iskermyw*rwydn*cl*mfnk*l*taimyfktnisfk*ykl**fqilknv*fph*fks
nqsncklynsfiff*fsiifiiiiiiik*l*fi*fffky*yyfnnciiinfinitlkikn
*ilkikikn*klkkk


Translated Amino Acid sequence (All Frames)
Frame A:
KKDMKLIIKIIFIIFLIKKIIGFEVHIIKYSNILCKGELLFTIGSTNCSRYSYFQKGAGG
KLAITXVNNQDQCSIERDITEFVQTKQCYLNTDGTSYQYIINDSEFN---

---v*skkyrxll**sklf*lxklfhkfx*k*nmy*nefw**sh*nkkrlqmiiviivqq
ldikgenvlvkmv*qlmfmnv*qvivnrnhvf*nkhilqivqiviisnp*kclissliqi
qsikl*iiqllhfllilnylhyhhhhhqmtlihlvlf*ililfqqlyhy*fy*yhfen*k
lniknkn*klkikkk

Frame B:
kkt*n***klyllyf*lkk*ldlkyi*lniviyyvkenyylqlvvqivqdihtfkkeqvv
n*qsxkliikinvqsnei*qnlykpnnvi*tlmvhhinis*tiqsli---

---FNPRNIXTYCNEVNYFNXENYFINSXRNKTCIKMNFGNDPIKIRNVFK******ynn
*iskermyw*rwydn*cl*mfnk*l*taimyfktnisfk*ykl**fqilknv*fph*fks
nqsncklynsfiff*fsiifiiiiiiik*l*fi*fffky*yyfnnciiinfinitlkikn
*ilkikikn*klkkk

Frame C:
krheinnknyiyyifn*knnwi*styn*i**yim*rriiiynw*yklfkifilskrsrw*
isnhxs**srsmfnrtrynrictnqtmlfkh*wyiisiyhkrfrv*---

---liqei*xpivmk*iilixkiis*ilieikhvlk*ilvmiplk*etssndnsnnstti
ryqrrecigkdgmtinvyecltsdckpqscilkqtypsnstncdnfkslkmfnfltdsnp
inqtvnyttpsfsfdsqlsslssssssndfdssssflniniistivsllillisl*klki
ky*k*klkikn*kkk

own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01710-1 (Contig-U01710-1Q)
/CSM_Contig/Contig-U01710-1Q.Seq.d
(910 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Conti... 1283 0.0
Contig-U11875-1 (Contig-U11875-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U13104-1 (Contig-U13104-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13053-1 (Contig-U13053-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13980-1 (Contig-U13980-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U12511-1 (Contig-U12511-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Conti... 38 0.023

>Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Contig-U01710-1Q.Seq.d
Length = 910

Score = 1283 bits (647), Expect = 0.0
Identities = 689/689 (100%)
Strand = Plus / Plus


Query: 59 taattggatttgaagtacatataattaaatatagtaatatattatgtaaaggagaattat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 taattggatttgaagtacatataattaaatatagtaatatattatgtaaaggagaattat 118


Query: 119 tatttacaattggtagtacaaattgttcaagatattcatactttcaaaaaggagcaggtg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tatttacaattggtagtacaaattgttcaagatattcatactttcaaaaaggagcaggtg 178


Query: 179 gtaaattagcaatcacanaagttaataatcaagatcaatgttcaatcgaacgagatataa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gtaaattagcaatcacanaagttaataatcaagatcaatgttcaatcgaacgagatataa 238


Query: 239 cagaatttgtacaaaccaaacaatgttatttaaacactgatggtacatcatatcaatata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cagaatttgtacaaaccaaacaatgttatttaaacactgatggtacatcatatcaatata 298


Query: 299 tcataaacgattcagagtttaatcnnnnnnnnnngtttaatccaagaaatataganacct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcataaacgattcagagtttaatcnnnnnnnnnngtttaatccaagaaatataganacct 358


Query: 359 attgtaatgaagtaaattattttaattgngaaaattatttcataaattctnatagaaata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attgtaatgaagtaaattattttaattgngaaaattatttcataaattctnatagaaata 418


Query: 419 aaacatgtattaaaatgaattttggtaatgatcccattaaaataagaaacgtcttcaaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaacatgtattaaaatgaattttggtaatgatcccattaaaataagaaacgtcttcaaat 478


Query: 479 gataatagtaataatagtacaacaattagatatcaaaggagagaatgtattggtaaagat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gataatagtaataatagtacaacaattagatatcaaaggagagaatgtattggtaaagat 538


Query: 539 ggtatgacaattaatgtttatgaatgtttaacaagtgattgtaaaccgcaatcatgtatt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggtatgacaattaatgtttatgaatgtttaacaagtgattgtaaaccgcaatcatgtatt 598


Query: 599 ttaaaacaaacatatccttcaaatagtacaaattgtgataatttcaaatccttaaaaatg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttaaaacaaacatatccttcaaatagtacaaattgtgataatttcaaatccttaaaaatg 658


Query: 659 tttaatttcctcactgattcaaatccaatcaatcaaactgtaaattatacaactccttca 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tttaatttcctcactgattcaaatccaatcaatcaaactgtaaattatacaactccttca 718


Query: 719 ttttcttttgattctcaattatcttcatt 747
|||||||||||||||||||||||||||||
Sbjct: 719 ttttcttttgattctcaattatcttcatt 747


Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus


Query: 767 aatgactttgattcatctagttcttttttaaatattaatattatttcaacaattgtatca 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aatgactttgattcatctagttcttttttaaatattaatattatttcaacaattgtatca 826


Query: 827 ttattaattttattaatatcactttg 852
||||||||||||||||||||||||||
Sbjct: 827 ttattaattttattaatatcactttg 852


>Contig-U11875-1 (Contig-U11875-1Q) /CSM_Contig/Contig-U11875-1Q.Seq.d
Length = 2137

Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 473 tcaaatgataatagtaataata 494
||||||||||||||||||||||
Sbjct: 820 tcaaatgataatagtaataata 841


>Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Contig-U14277-1Q.Seq.d
Length = 1224

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 827 ttattaattttattaatatca 847
|||||||||||||||||||||
Sbjct: 1108 ttattaattttattaatatca 1128


Score = 32.2 bits (16), Expect = 1.4
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 475 aaatgataatagtaataata 494
|||| |||||||||||||||
Sbjct: 1180 aaataataatagtaataata 1199


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,523
Number of Sequences: 8361
Number of extensions: 24523
Number of successful extensions: 3914
Number of sequences better than 10.0: 644
length of query: 910
length of database: 7,895,291
effective HSP length: 16
effective length of query: 894
effective length of database: 7,761,515
effective search space: 6938794410
effective search space used: 6938794410
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 4
Homology vs DNA
Query= Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Contig-U01710-1Q.Seq.d
(910 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037232) Dictyostelium discoideum slug cDNA, clone SSB639. 795 0.0 2
(C92966) Dictyostelium discoideum slug cDNA, clone SSF282. 573 0.0 3
(AU072871) Dictyostelium discoideum slug cDNA, clone SSF282. 345 2e-90 1
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.010 13
(CT779661) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.042 2
(BV956451) pRRL2:Newb:20080411:336700 USMARC Pig Breed SNP D... 50 0.15 1
(BH488183) BOHPS39TF BOHP Brassica oleracea genomic clone BO... 38 0.18 3
(AL844506) Plasmodium falciparum chromosome 7. 36 0.54 16
(ED549743) WCBE226TF WCBAC Trifolium repens genomic clone 27... 38 0.55 2
(AC135361) Mus musculus BAC clone RP23-216A21 from chromosom... 48 0.60 1
(AC116572) Mus musculus BAC clone RP23-101D16 from 14, compl... 48 0.60 1
(CU467916) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.60 1
(EJ434591) 1093015273291 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.60 1
(AB361304) Chamaecyparis obtusa mRNA, differentiating xylem,... 48 0.60 1
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.73 9
(AL645751) Mouse DNA sequence from clone RP23-396K15 on chro... 42 0.90 4
(AC150993) Bos taurus BAC CH240-186K21 (Children's Hospital... 34 0.91 5
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 36 1.1 9
(AL844509) Plasmodium falciparum chromosome 13. 36 1.2 12
(AY170439) Dictyostelium discoideum mitochondrial DNA polyme... 36 1.2 3
(CU131841) Equus caballus GSS, BAC clone CH241-253B17, SP6 e... 42 1.3 2
(CU164745) Equus caballus GSS, BAC clone CH241-286M9, T7 end... 36 1.5 2
(CR352305) Zebrafish DNA sequence from clone CH211-95N4 in l... 34 1.7 8
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 32 1.8 11
(BV077688) S212P6195FE8.T0 CZECHII/Ei Mus musculus STS genom... 46 2.4 1
(AL732400) Mouse DNA sequence from clone RP23-92K6 on chromo... 46 2.4 1
(AM910990) Plasmodium knowlesi strain H chromosome 8, comple... 46 2.4 1
(AC160047) Bos taurus clone CH240-37L15, WORKING DRAFT SEQUE... 46 2.4 1
(AC157075) Bos taurus clone CH240-62M19, WORKING DRAFT SEQUE... 46 2.4 1
(CU694940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.4 1
(AC225880) Monodelphis domestica clone VMRC18-159E24, WORKIN... 46 2.4 1
(AC189533) Brassica rapa subsp. pekinensis clone KBrH001D23,... 46 2.4 1
(AL313612) Tetraodon nigroviridis genome survey sequence T3 ... 46 2.4 1
(ES329793) CTZ79-D08.y1d-s SHGC-CTZ Ostreococcus lucimarinus... 46 2.4 1
(DT509656) WS02424.BR_F09 PTxD-ICC-N-A-14 Populus trichocarp... 46 2.4 1
(DT489820) WS02543.B21_E09 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1
(DT486721) WS02531.B21_M04 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1
(DT485145) WS02527.B21_G16 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1
(DT481395) WS02531.BR_M04 PT-MB-N-A-15 Populus trichocarpa c... 46 2.4 1
(CV242612) WS02515.B21_I17 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1
(BB938700) Trifolium pratense cDNA clone:RCC11993. 46 2.4 1
(GE334980) C07_03_H01 Sheepshead Minnow cDNA Library Cyprino... 46 2.4 1
(FC730875) CBBG6264.rev CBBG Lottia gigantea 12,15,18h embry... 46 2.4 1
(FC589756) CAXP5667.rev CAXP Lottia gigantea from head, foot... 46 2.4 1
(FC564772) CAWF5678.fwd CAWF Lottia gigantea from mantle (H)... 46 2.4 1
(FC564771) CAWF5678.rev CAWF Lottia gigantea from mantle (H)... 46 2.4 1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 46 2.4 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 46 2.4 1
(BD287138) Novel full length cDNA. 34 2.6 3
(AX714915) Sequence 1599 from Patent EP1293569. 34 2.6 3
(AR787767) Sequence 1599 from patent US 6979557. 34 2.6 3
(AK057622) Homo sapiens cDNA FLJ33060 fis, clone TRACH2000015. 34 2.6 3
(BZ391233) EINCY22TR EI_10_12_KB Entamoeba invadens genomic ... 36 2.8 3
(AC171014) Gallus gallus BAC clone CH261-89A18 from chromoso... 38 2.8 5
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 32 3.6 2
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 32 3.6 2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 32 3.6 2
(CP000727) Clostridium botulinum A str. Hall, complete genome. 32 3.6 2
(CU633900) Podospora anserina genomic DNA chromosome 7, supe... 34 3.6 2
(CD452240) USDA-FP_104661 Adult Alate Brown Citrus Aphid Tox... 34 3.9 3
(AC087702) Trypanosoma brucei clone RPCI93-45I2, *** SEQUENC... 44 4.0 4
(Z98551) Plasmodium falciparum MAL3P6. 44 4.1 6
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi... 34 4.3 9
(AL080317) Human DNA sequence from clone RP5-1112D6 on chrom... 40 4.3 4
(AC220124) Bos taurus clone CH240-363G3, WORKING DRAFT SEQUE... 40 4.3 5
(AC168724) Strongylocentrotus purpuratus clone R3-3010O16, W... 32 4.4 2
(AL354992) Human DNA sequence from clone RP11-293A1 on chrom... 34 4.5 2
(AC168730) Strongylocentrotus purpuratus clone R3-3010K13, W... 32 4.5 2
(BC041350) Homo sapiens protein phosphatase 1K (PP2C domain ... 34 5.4 3
(CR931759) Zebrafish DNA sequence from clone DKEYP-39E9 in l... 42 5.7 5
(AC218478) Bos taurus clone CH240-314L7, WORKING DRAFT SEQUE... 42 5.8 5
(AL606463) Human DNA sequence from clone RP11-485D21 on chro... 36 5.8 5
(ES392447) MUS11-G07.x1d-t SHGC-MUS Mytilus californianus cD... 34 5.9 2
(CZ811294) OC__Ba0186E06.f OC__Ba Oryza coarctata genomic cl... 34 6.0 2
(CT952781) Equus caballus GSS, BAC clone CH241-27O12, SP6 en... 32 6.1 2
(AC148484) Medicago truncatula chromosome 8 clone mth2-46g10... 40 6.1 7
(AQ507916) RPCI-11-278F20.TV RPCI-11 Homo sapiens genomic cl... 34 6.2 2
(CU076079) Zebrafish DNA sequence from clone CH73-66H23 in l... 34 6.2 5
(CZ791360) OC__Ba0158L09.f OC__Ba Oryza coarctata genomic cl... 42 6.5 2
(CZ531141) SRAA-aac71b11.g1 Strongyloides ratti whole genome... 40 6.9 2
(AL034559) Plasmodium falciparum MAL3P7. 40 7.2 8
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 32 7.5 11
(CR119757) Forward strand read from insert in 5'HPRT inserti... 36 7.6 2
(EJ336852) 1092963483894 Global-Ocean-Sampling_GS-28-01-01-1... 42 8.2 2
(AL591363) Human DNA sequence from clone RP11-45P22 on chrom... 40 8.4 3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 8.7 9
(AC222608) Bos taurus clone CH240-444N14, WORKING DRAFT SEQU... 42 8.7 4
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 8.7 5
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 9.0 9
(BX649468) Zebrafish DNA sequence from clone CH211-152C2 in ... 44 9.3 1
(BX572635) Zebrafish DNA sequence from clone CH211-235O23 in... 44 9.3 1
(BX510919) Zebrafish DNA sequence from clone DKEY-164K19 in ... 44 9.3 1
(BV020130) S208P6284RD6.T0 129S1/SvImJ Mus musculus STS geno... 44 9.3 1
(AL928988) Mouse DNA sequence from clone RP23-402M7 on chrom... 44 9.3 1
(AC153378) Mus musculus 6 BAC RP23-106C18 (Roswell Park Canc... 44 9.3 1
(DQ149023) Synechococcus cyanophage syn9, complete genome. 44 9.3 1
(EA618325) Sequence 1 from patent US 7364864. 44 9.3 1
(DD333461) A method of testing a sensitivity of tumor cells ... 44 9.3 1
(DD322105) ANGE gene in Atopy. 44 9.3 1
(DD144930) ANGE gene in Atopy. 44 9.3 1
(AX739961) Sequence 1 from Patent WO03000296. 44 9.3 1
(AX711879) Sequence 1 from Patent WO03000727. 44 9.3 1
(AL008970) Plasmodium falciparum MAL3P4. 44 9.3 1
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 44 9.3 1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 9.3 1
(X96884) H.sapiens spcDNA, O-LTR like repeat, clone 2-62. 44 9.3 1
(AL589677) Human DNA sequence from clone RP11-12P4 on chromo... 44 9.3 1
(AL138875) Human DNA sequence from clone RP11-103J18 on chro... 44 9.3 1
(AC010656) Homo sapiens clone RP11-275E24, complete sequence. 44 9.3 1
(AC153703) Bos taurus clone CH240-28O16, WORKING DRAFT SEQUE... 44 9.3 1
(AC115167) Rattus norvegicus clone CH230-160B10, *** SEQUENC... 44 9.3 1
(AC112812) Rattus norvegicus clone CH230-33G16, *** SEQUENCI... 44 9.3 1
(CU914497) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.3 1
(AC087581) Homo sapiens chromosome 8 clone RP11-275E24 map 8... 44 9.3 1
(CU459217) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.3 1
(AC233013) Ornithorhynchus anatinus clone CH236-589C4, WORKI... 44 9.3 1
(AC223176) Bos taurus clone CH240-427D20, WORKING DRAFT SEQU... 44 9.3 1
(AC221164) Bos taurus clone CH240-395L14, WORKING DRAFT SEQU... 44 9.3 1
(AC209910) Zea mays chromosome 6 clone CH201-362I4; ZMMBBc03... 44 9.3 1
(AC201371) Strongylocentrotus purpuratus clone R3-17D7, WORK... 44 9.3 1
(AC195441) Ornithorhynchus anatinus clone OA_Bb-565J10, WORK... 44 9.3 1
(AC193379) Zea mays chromosome 3 clone ZMMBBb-532N20; ZMMBBb... 44 9.3 1
(AC181102) Strongylocentrotus purpuratus clone R3-3047K03, W... 44 9.3 1
(AC178391) Strongylocentrotus purpuratus clone R3-3107P8, WO... 44 9.3 1
(AC177181) Strongylocentrotus purpuratus clone R3-4018C22, W... 44 9.3 1
(AZ138099) SP_0177_A1_D09_SP6E Strongylocentrotus purpuratus... 44 9.3 1
(AQ945426) Sheared DNA-45H11.TF Sheared DNA Trypanosoma bruc... 44 9.3 1
(ET725141) CHO_OF136xc15f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.3 1
(ET099633) QM0AAB15AH04RM1 CCER1 Citrus clementina genomic c... 44 9.3 1
(AL475997) T. brucei sheared genomic DNA clone 199d12, forwa... 44 9.3 1
(AL457464) T. brucei sheared genomic DNA clone 73g12, forwar... 44 9.3 1
(EI030705) hgz0003cg02.b1 hgz Oryza alta genomic clone hgz00... 44 9.3 1
(ED327570) AUAC-aad81e11.g1 Ascaris suum whole genome shotgu... 44 9.3 1
(AL422003) T7 end of clone AY0AA016E05 of library AY0AA from... 44 9.3 1
(AL262333) Tetraodon nigroviridis genome survey sequence PUC... 44 9.3 1
(DU058789) 90678 Tomato HindIII BAC Library Solanum lycopers... 44 9.3 1
(DE864975) Macropus eugenii DNA, BAC clone: MEB1-032N22_R, 3... 44 9.3 1
(CZ891954) 205_1_11970056_3_37687_052 Cotton methylation fil... 44 9.3 1
(CZ139418) OA_BBa0035C12.r OA_BBa Oryza alta genomic clone O... 44 9.3 1
(AG729132) Macaca fuscata fuscata DNA, clone: MSB2-183I23_R,... 44 9.3 1
(CC273696) CH261-92F9_RM1.1 CH261 Gallus gallus genomic clon... 44 9.3 1
(CC114126) NDL.5D12.T7 Notre Dame Liverpool Aedes aegypti ge... 44 9.3 1
(BZ014729) oeh10e06.b1 B.oleracea002 Brassica oleracea genom... 44 9.3 1
(DW405318) ES-N-S03-0158-W Penaeus monodon Eyestalk cDNA lib... 44 9.3 1
(DW405234) ES-N-S03-0029-W Penaeus monodon Eyestalk cDNA lib... 44 9.3 1
(DN902719) naq38d06.y1 Zebrafish retina. Unnormalized (naq) ... 44 9.3 1
(DC206996) Plasmodium berghei strain ANKA cDNA clone:MG00696... 44 9.3 1
(CV217886) EST877596 non-normalized T1 cDNA library Trichomo... 44 9.3 1
(CO783296) BL017C_E04 6-Day Axolotl Tail Blastema (6DAxBL) A... 44 9.3 1
(CF589878) AGENCOURT_15683535 NICHD_XGC_Swb1N Xenopus (Silur... 44 9.3 1
(CB782307) AMGNNUC:HKR1-00316-A1-B Anemic Rat Kidney (10400)... 44 9.3 1
(CA504686) UI-R-FJ0-cpw-n-10-0-UI.s1 UI-R-FJ0 Rattus norvegi... 44 9.3 1
(CA208890) SCEZAD1C03E05.g AD1 Saccharum officinarum cDNA cl... 44 9.3 1
(AI705060) UI-R-G0-uj-f-01-0-UI.s2 UI-R-G0 Rattus norvegicus... 44 9.3 1
(BQ192911) UI-R-DR1-clk-a-20-0-UI.s1 UI-R-DR1 Rattus norvegi... 44 9.3 1
(BJ423086) Dictyostelium discoideum cDNA clone:ddv48d01, 5' ... 44 9.3 1
(EY752532) CS00-C5-003-067-G07-CT.F Sweet orange flower, gre... 44 9.3 1
(EY293474) CAWX11147.fwd CAWX Helobdella robusta Primary Ear... 44 9.3 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 9.6 9

>(AU037232) Dictyostelium discoideum slug cDNA, clone SSB639.
Length = 579

Score = 795 bits (401), Expect(2) = 0.0
Identities = 412/413 (99%)
Strand = Plus / Plus


Query: 334 tttaatccaagaaatataganacctattgtaatgaagtaaattattttaattgngaaaat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tttaatccaagaaatataganacctattgtaatgaagtaaattattttaattgngaaaat 61


Query: 394 tatttcataaattctnatagaaataaaacatgtattaaaatgaattttggtaatgatccc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tatttcataaattctnatagaaataaaacatgtattaaaatgaattttggtaatgatccc 121


Query: 454 attaaaataagaaacgtcttcaaatgataatagtaataatagtacaacaattagatatca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 attaaaataagaaacgtcttcaaatgataatagtaataatagtacaacaattagatatca 181


Query: 514 aaggagagaatgtattggtaaagatggtatgacaattaatgtttatgaatgtttaacaag 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aaggagagaatgtattggtaaagatggtatgacaattaatgtttatgaatgtttaacaag 241


Query: 574 tgattgtaaaccgcaatcatgtattttaaaacaaacatatccttcaaatagtacaaattg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgattgtaaaccgcaatcatgtattttaaaacaaacatatccttcaaatagtacaaattg 301


Query: 634 tgataatttcaaatccttaaaaatgtttaatttcctcactgattcaaatccaatcaatca 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgataatttcaaatccttaaaaatgtttaatttcctcactgattcaaatccaatcaatca 361


Query: 694 aactgtaaattatacaactccttcattttcttttgattctcaattatcttcat 746
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 362 aactgtaaattatacaactccttcattttcttttgattctcaatnatcttcat 414

Score = 40.1 bits (20), Expect(2) = 0.0
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 767 aatgactttgattcatctagttc 789
||||||||||||| |||||||||
Sbjct: 435 aatgactttgattnatctagttc 457

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 996,863,114
Number of extensions: 64584604
Number of successful extensions: 5623279
Number of sequences better than 10.0: 160
Length of query: 910
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 886
Effective length of database: 99,340,224,878
Effective search space: 88015439241908
Effective search space used: 88015439241908
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Contig-U01710-1Q.Seq.d
(910 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 839,784,707
Number of extensions: 12951769
Number of successful extensions: 24054
Number of sequences better than 10.0: 0
Number of HSP's gapped: 24051
Number of HSP's successfully gapped: 0
Length of query: 303
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 175
Effective length of database: 636,901,312
Effective search space: 111457729600
Effective search space used: 111457729600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.02 gvh: 0.53 alm: 0.22 top: 0.43 tms: 0.07 mit: 0.18 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for Contig-U01710-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0