Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Contig-U01710-1Q.Seq.d (910 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU037232) Dictyostelium discoideum slug cDNA, clone SSB639. 795 0.0 2 (C92966) Dictyostelium discoideum slug cDNA, clone SSF282. 573 0.0 3 (AU072871) Dictyostelium discoideum slug cDNA, clone SSF282. 345 2e-90 1 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.010 13 (CT779661) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.042 2 (BV956451) pRRL2:Newb:20080411:336700 USMARC Pig Breed SNP D... 50 0.15 1 (BH488183) BOHPS39TF BOHP Brassica oleracea genomic clone BO... 38 0.18 3 (AL844506) Plasmodium falciparum chromosome 7. 36 0.54 16 (ED549743) WCBE226TF WCBAC Trifolium repens genomic clone 27... 38 0.55 2 (AC135361) Mus musculus BAC clone RP23-216A21 from chromosom... 48 0.60 1 (AC116572) Mus musculus BAC clone RP23-101D16 from 14, compl... 48 0.60 1 (CU467916) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.60 1 (EJ434591) 1093015273291 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.60 1 (AB361304) Chamaecyparis obtusa mRNA, differentiating xylem,... 48 0.60 1 (AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.73 9 (AL645751) Mouse DNA sequence from clone RP23-396K15 on chro... 42 0.90 4 (AC150993) Bos taurus BAC CH240-186K21 (Children's Hospital... 34 0.91 5 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 36 1.1 9 (AL844509) Plasmodium falciparum chromosome 13. 36 1.2 12 (AY170439) Dictyostelium discoideum mitochondrial DNA polyme... 36 1.2 3 (CU131841) Equus caballus GSS, BAC clone CH241-253B17, SP6 e... 42 1.3 2 (CU164745) Equus caballus GSS, BAC clone CH241-286M9, T7 end... 36 1.5 2 (CR352305) Zebrafish DNA sequence from clone CH211-95N4 in l... 34 1.7 8 (AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 32 1.8 11 (BV077688) S212P6195FE8.T0 CZECHII/Ei Mus musculus STS genom... 46 2.4 1 (AL732400) Mouse DNA sequence from clone RP23-92K6 on chromo... 46 2.4 1 (AM910990) Plasmodium knowlesi strain H chromosome 8, comple... 46 2.4 1 (AC160047) Bos taurus clone CH240-37L15, WORKING DRAFT SEQUE... 46 2.4 1 (AC157075) Bos taurus clone CH240-62M19, WORKING DRAFT SEQUE... 46 2.4 1 (CU694940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.4 1 (AC225880) Monodelphis domestica clone VMRC18-159E24, WORKIN... 46 2.4 1 (AC189533) Brassica rapa subsp. pekinensis clone KBrH001D23,... 46 2.4 1 (AL313612) Tetraodon nigroviridis genome survey sequence T3 ... 46 2.4 1 (ES329793) CTZ79-D08.y1d-s SHGC-CTZ Ostreococcus lucimarinus... 46 2.4 1 (DT509656) WS02424.BR_F09 PTxD-ICC-N-A-14 Populus trichocarp... 46 2.4 1 (DT489820) WS02543.B21_E09 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1 (DT486721) WS02531.B21_M04 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1 (DT485145) WS02527.B21_G16 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1 (DT481395) WS02531.BR_M04 PT-MB-N-A-15 Populus trichocarpa c... 46 2.4 1 (CV242612) WS02515.B21_I17 PT-MB-N-A-15 Populus trichocarpa ... 46 2.4 1 (BB938700) Trifolium pratense cDNA clone:RCC11993. 46 2.4 1 (GE334980) C07_03_H01 Sheepshead Minnow cDNA Library Cyprino... 46 2.4 1 (FC730875) CBBG6264.rev CBBG Lottia gigantea 12,15,18h embry... 46 2.4 1 (FC589756) CAXP5667.rev CAXP Lottia gigantea from head, foot... 46 2.4 1 (FC564772) CAWF5678.fwd CAWF Lottia gigantea from mantle (H)... 46 2.4 1 (FC564771) CAWF5678.rev CAWF Lottia gigantea from mantle (H)... 46 2.4 1 (CP000939) Clostridium botulinum B1 str. Okra, complete genome. 46 2.4 1 (CP000728) Clostridium botulinum F str. Langeland, complete ... 46 2.4 1 (BD287138) Novel full length cDNA. 34 2.6 3 (AX714915) Sequence 1599 from Patent EP1293569. 34 2.6 3 (AR787767) Sequence 1599 from patent US 6979557. 34 2.6 3 (AK057622) Homo sapiens cDNA FLJ33060 fis, clone TRACH2000015. 34 2.6 3 (BZ391233) EINCY22TR EI_10_12_KB Entamoeba invadens genomic ... 36 2.8 3 (AC171014) Gallus gallus BAC clone CH261-89A18 from chromoso... 38 2.8 5 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 32 3.6 2 (AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 32 3.6 2 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 32 3.6 2 (CP000727) Clostridium botulinum A str. Hall, complete genome. 32 3.6 2 (CU633900) Podospora anserina genomic DNA chromosome 7, supe... 34 3.6 2 (CD452240) USDA-FP_104661 Adult Alate Brown Citrus Aphid Tox... 34 3.9 3 (AC087702) Trypanosoma brucei clone RPCI93-45I2, *** SEQUENC... 44 4.0 4 (Z98551) Plasmodium falciparum MAL3P6. 44 4.1 6 (AL360354) Plasmodium vivax telomeric YAC clone, complete fi... 34 4.3 9 (AL080317) Human DNA sequence from clone RP5-1112D6 on chrom... 40 4.3 4 (AC220124) Bos taurus clone CH240-363G3, WORKING DRAFT SEQUE... 40 4.3 5 (AC168724) Strongylocentrotus purpuratus clone R3-3010O16, W... 32 4.4 2 (AL354992) Human DNA sequence from clone RP11-293A1 on chrom... 34 4.5 2 (AC168730) Strongylocentrotus purpuratus clone R3-3010K13, W... 32 4.5 2 (BC041350) Homo sapiens protein phosphatase 1K (PP2C domain ... 34 5.4 3 (CR931759) Zebrafish DNA sequence from clone DKEYP-39E9 in l... 42 5.7 5 (AC218478) Bos taurus clone CH240-314L7, WORKING DRAFT SEQUE... 42 5.8 5 (AL606463) Human DNA sequence from clone RP11-485D21 on chro... 36 5.8 5 (ES392447) MUS11-G07.x1d-t SHGC-MUS Mytilus californianus cD... 34 5.9 2 (CZ811294) OC__Ba0186E06.f OC__Ba Oryza coarctata genomic cl... 34 6.0 2 (CT952781) Equus caballus GSS, BAC clone CH241-27O12, SP6 en... 32 6.1 2 (AC148484) Medicago truncatula chromosome 8 clone mth2-46g10... 40 6.1 7 (AQ507916) RPCI-11-278F20.TV RPCI-11 Homo sapiens genomic cl... 34 6.2 2 (CU076079) Zebrafish DNA sequence from clone CH73-66H23 in l... 34 6.2 5 (CZ791360) OC__Ba0158L09.f OC__Ba Oryza coarctata genomic cl... 42 6.5 2 (CZ531141) SRAA-aac71b11.g1 Strongyloides ratti whole genome... 40 6.9 2 (AL034559) Plasmodium falciparum MAL3P7. 40 7.2 8 (AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 32 7.5 11 (CR119757) Forward strand read from insert in 5'HPRT inserti... 36 7.6 2 (EJ336852) 1092963483894 Global-Ocean-Sampling_GS-28-01-01-1... 42 8.2 2 (AL591363) Human DNA sequence from clone RP11-45P22 on chrom... 40 8.4 3 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 8.7 9 (AC222608) Bos taurus clone CH240-444N14, WORKING DRAFT SEQU... 42 8.7 4 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 8.7 5 (AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 9.0 9 (BX649468) Zebrafish DNA sequence from clone CH211-152C2 in ... 44 9.3 1 (BX572635) Zebrafish DNA sequence from clone CH211-235O23 in... 44 9.3 1 (BX510919) Zebrafish DNA sequence from clone DKEY-164K19 in ... 44 9.3 1 (BV020130) S208P6284RD6.T0 129S1/SvImJ Mus musculus STS geno... 44 9.3 1 (AL928988) Mouse DNA sequence from clone RP23-402M7 on chrom... 44 9.3 1 (AC153378) Mus musculus 6 BAC RP23-106C18 (Roswell Park Canc... 44 9.3 1 (DQ149023) Synechococcus cyanophage syn9, complete genome. 44 9.3 1 (EA618325) Sequence 1 from patent US 7364864. 44 9.3 1 (DD333461) A method of testing a sensitivity of tumor cells ... 44 9.3 1 (DD322105) ANGE gene in Atopy. 44 9.3 1 (DD144930) ANGE gene in Atopy. 44 9.3 1 (AX739961) Sequence 1 from Patent WO03000296. 44 9.3 1 (AX711879) Sequence 1 from Patent WO03000727. 44 9.3 1 (AL008970) Plasmodium falciparum MAL3P4. 44 9.3 1 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 44 9.3 1 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 9.3 1 (X96884) H.sapiens spcDNA, O-LTR like repeat, clone 2-62. 44 9.3 1 (AL589677) Human DNA sequence from clone RP11-12P4 on chromo... 44 9.3 1 (AL138875) Human DNA sequence from clone RP11-103J18 on chro... 44 9.3 1 (AC010656) Homo sapiens clone RP11-275E24, complete sequence. 44 9.3 1 (AC153703) Bos taurus clone CH240-28O16, WORKING DRAFT SEQUE... 44 9.3 1 (AC115167) Rattus norvegicus clone CH230-160B10, *** SEQUENC... 44 9.3 1 (AC112812) Rattus norvegicus clone CH230-33G16, *** SEQUENCI... 44 9.3 1 (CU914497) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.3 1 (AC087581) Homo sapiens chromosome 8 clone RP11-275E24 map 8... 44 9.3 1 (CU459217) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.3 1 (AC233013) Ornithorhynchus anatinus clone CH236-589C4, WORKI... 44 9.3 1 (AC223176) Bos taurus clone CH240-427D20, WORKING DRAFT SEQU... 44 9.3 1 (AC221164) Bos taurus clone CH240-395L14, WORKING DRAFT SEQU... 44 9.3 1 (AC209910) Zea mays chromosome 6 clone CH201-362I4; ZMMBBc03... 44 9.3 1 (AC201371) Strongylocentrotus purpuratus clone R3-17D7, WORK... 44 9.3 1 (AC195441) Ornithorhynchus anatinus clone OA_Bb-565J10, WORK... 44 9.3 1 (AC193379) Zea mays chromosome 3 clone ZMMBBb-532N20; ZMMBBb... 44 9.3 1 (AC181102) Strongylocentrotus purpuratus clone R3-3047K03, W... 44 9.3 1 (AC178391) Strongylocentrotus purpuratus clone R3-3107P8, WO... 44 9.3 1 (AC177181) Strongylocentrotus purpuratus clone R3-4018C22, W... 44 9.3 1 (AZ138099) SP_0177_A1_D09_SP6E Strongylocentrotus purpuratus... 44 9.3 1 (AQ945426) Sheared DNA-45H11.TF Sheared DNA Trypanosoma bruc... 44 9.3 1 (ET725141) CHO_OF136xc15f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.3 1 (ET099633) QM0AAB15AH04RM1 CCER1 Citrus clementina genomic c... 44 9.3 1 (AL475997) T. brucei sheared genomic DNA clone 199d12, forwa... 44 9.3 1 (AL457464) T. brucei sheared genomic DNA clone 73g12, forwar... 44 9.3 1 (EI030705) hgz0003cg02.b1 hgz Oryza alta genomic clone hgz00... 44 9.3 1 (ED327570) AUAC-aad81e11.g1 Ascaris suum whole genome shotgu... 44 9.3 1 (AL422003) T7 end of clone AY0AA016E05 of library AY0AA from... 44 9.3 1 (AL262333) Tetraodon nigroviridis genome survey sequence PUC... 44 9.3 1 (DU058789) 90678 Tomato HindIII BAC Library Solanum lycopers... 44 9.3 1 (DE864975) Macropus eugenii DNA, BAC clone: MEB1-032N22_R, 3... 44 9.3 1 (CZ891954) 205_1_11970056_3_37687_052 Cotton methylation fil... 44 9.3 1 (CZ139418) OA_BBa0035C12.r OA_BBa Oryza alta genomic clone O... 44 9.3 1 (AG729132) Macaca fuscata fuscata DNA, clone: MSB2-183I23_R,... 44 9.3 1 (CC273696) CH261-92F9_RM1.1 CH261 Gallus gallus genomic clon... 44 9.3 1 (CC114126) NDL.5D12.T7 Notre Dame Liverpool Aedes aegypti ge... 44 9.3 1 (BZ014729) oeh10e06.b1 B.oleracea002 Brassica oleracea genom... 44 9.3 1 (DW405318) ES-N-S03-0158-W Penaeus monodon Eyestalk cDNA lib... 44 9.3 1 (DW405234) ES-N-S03-0029-W Penaeus monodon Eyestalk cDNA lib... 44 9.3 1 (DN902719) naq38d06.y1 Zebrafish retina. Unnormalized (naq) ... 44 9.3 1 (DC206996) Plasmodium berghei strain ANKA cDNA clone:MG00696... 44 9.3 1 (CV217886) EST877596 non-normalized T1 cDNA library Trichomo... 44 9.3 1 (CO783296) BL017C_E04 6-Day Axolotl Tail Blastema (6DAxBL) A... 44 9.3 1 (CF589878) AGENCOURT_15683535 NICHD_XGC_Swb1N Xenopus (Silur... 44 9.3 1 (CB782307) AMGNNUC:HKR1-00316-A1-B Anemic Rat Kidney (10400)... 44 9.3 1 (CA504686) UI-R-FJ0-cpw-n-10-0-UI.s1 UI-R-FJ0 Rattus norvegi... 44 9.3 1 (CA208890) SCEZAD1C03E05.g AD1 Saccharum officinarum cDNA cl... 44 9.3 1 (AI705060) UI-R-G0-uj-f-01-0-UI.s2 UI-R-G0 Rattus norvegicus... 44 9.3 1 (BQ192911) UI-R-DR1-clk-a-20-0-UI.s1 UI-R-DR1 Rattus norvegi... 44 9.3 1 (BJ423086) Dictyostelium discoideum cDNA clone:ddv48d01, 5' ... 44 9.3 1 (EY752532) CS00-C5-003-067-G07-CT.F Sweet orange flower, gre... 44 9.3 1 (EY293474) CAWX11147.fwd CAWX Helobdella robusta Primary Ear... 44 9.3 1 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 9.6 9
>(AU037232) Dictyostelium discoideum slug cDNA, clone SSB639. Length = 579
Score = 795 bits (401), Expect(2) = 0.0 Identities = 412/413 (99%) Strand = Plus / Plus
Query: 334 tttaatccaagaaatataganacctattgtaatgaagtaaattattttaattgngaaaat 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 tttaatccaagaaatataganacctattgtaatgaagtaaattattttaattgngaaaat 61
Query: 394 tatttcataaattctnatagaaataaaacatgtattaaaatgaattttggtaatgatccc 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 tatttcataaattctnatagaaataaaacatgtattaaaatgaattttggtaatgatccc 121
Query: 454 attaaaataagaaacgtcttcaaatgataatagtaataatagtacaacaattagatatca 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 attaaaataagaaacgtcttcaaatgataatagtaataatagtacaacaattagatatca 181
Query: 514 aaggagagaatgtattggtaaagatggtatgacaattaatgtttatgaatgtttaacaag 573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 aaggagagaatgtattggtaaagatggtatgacaattaatgtttatgaatgtttaacaag 241
Query: 574 tgattgtaaaccgcaatcatgtattttaaaacaaacatatccttcaaatagtacaaattg 633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tgattgtaaaccgcaatcatgtattttaaaacaaacatatccttcaaatagtacaaattg 301
Query: 634 tgataatttcaaatccttaaaaatgtttaatttcctcactgattcaaatccaatcaatca 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 tgataatttcaaatccttaaaaatgtttaatttcctcactgattcaaatccaatcaatca 361
Query: 694 aactgtaaattatacaactccttcattttcttttgattctcaattatcttcat 746 |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 362 aactgtaaattatacaactccttcattttcttttgattctcaatnatcttcat 414
Score = 40.1 bits (20), Expect(2) = 0.0 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 767 aatgactttgattcatctagttc 789 ||||||||||||| ||||||||| Sbjct: 435 aatgactttgattnatctagttc 457
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 996,863,114 Number of extensions: 64584604 Number of successful extensions: 5623279 Number of sequences better than 10.0: 160 Length of query: 910 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 886 Effective length of database: 99,340,224,878 Effective search space: 88015439241908 Effective search space used: 88015439241908 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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