| Contig-U10800-1 |
| Contig ID |
Contig-U10800-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1442 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
5204623 |
| End point |
5202943 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
14 |
| Number of EST |
20 |
| Link to clone list |
U10800 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.22 |
| Homology vs DNA |
Query= Contig-U10800-1 (Contig-U10800-1Q) /CSM_Contig/Contig-U10800-1Q.Seq.d
(1452 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AF318287) Dictyostelium discoideum putative calmodulin-bind... 1348 0.0 1
(BJ372275) Dictyostelium discoideum cDNA clone:ddc11n24, 3' ... 1277 0.0 1
(BJ377425) Dictyostelium discoideum cDNA clone:ddc24c18, 3' ... 1150 0.0 1
(BJ363295) Dictyostelium discoideum cDNA clone:ddc25o21, 5' ... 1116 0.0 1
(BJ361582) Dictyostelium discoideum cDNA clone:ddc17h20, 5' ... 1114 0.0 1
(BJ374007) Dictyostelium discoideum cDNA clone:ddc5g22, 3' e... 1098 0.0 1
(BJ360832) Dictyostelium discoideum cDNA clone:ddc8n02, 5' e... 1094 0.0 1
(BJ324734) Dictyostelium discoideum cDNA clone:dda7p17, 5' e... 1084 0.0 1
(BJ359561) Dictyostelium discoideum cDNA clone:ddc15j07, 5' ... 1082 0.0 1
(BJ373019) Dictyostelium discoideum cDNA clone:ddc15j07, 3' ... 1080 0.0 1
(BJ358515) Dictyostelium discoideum cDNA clone:ddc1m23, 5' e... 1072 0.0 1
(BJ360379) Dictyostelium discoideum cDNA clone:ddc5g22, 5' e... 1051 0.0 1
(BJ387149) Dictyostelium discoideum cDNA clone:dds12f13, 5' ... 1019 0.0 1
(BJ377671) Dictyostelium discoideum cDNA clone:ddc25i07, 3' ... 1009 0.0 1
(BJ398470) Dictyostelium discoideum cDNA clone:dds12f13, 3' ... 940 0.0 3
(BJ358920) Dictyostelium discoideum cDNA clone:ddc11n24, 5' ... 932 0.0 1
(BJ327120) Dictyostelium discoideum cDNA clone:dda19a08, 5' ... 930 0.0 1
(BJ363001) Dictyostelium discoideum cDNA clone:ddc24c18, 5' ... 777 0.0 1
(BJ388896) Dictyostelium discoideum cDNA clone:dds16o15, 5' ... 402 0.0 2
(BJ358607) Dictyostelium discoideum cDNA clone:ddc10n08, 5' ... 561 e-155 1
(BJ371938) Dictyostelium discoideum cDNA clone:ddc10n08, 3' ... 230 1e-55 1
(AC205774) Pongo abelii chromosome UNKNOWN clone CH276-207I1... 42 0.14 6
(CU179656) Zebrafish DNA sequence from clone CH211-204J14. 50 0.24 1
(BX470150) Zebrafish DNA sequence from clone DKEY-164K14 in ... 50 0.24 1
(AL591605) Human DNA sequence from clone RP11-476G6 on chrom... 50 0.24 1
(AL365503) Human DNA sequence from clone RP11-409K15 on chro... 50 0.24 1
(AC016848) Homo sapiens clone RP11-7C12, WORKING DRAFT SEQUE... 50 0.24 1
(BM062497) KS01043E08 KS01 Capsicum annuum cDNA, mRNA sequence. 44 0.24 2
(AL714001) Human DNA sequence from clone RP11-763I5 on chrom... 34 0.52 2
(AP006209) Homo sapiens genomic DNA, chromosome 9, clone:RP1... 34 0.53 2
(AB020869) Homo sapiens genomic DNA of 9q32 anti-oncogene of... 34 0.53 2
(ED636215) GM_WBa0043C10.f GM_WBa Glycine max genomic clone ... 34 0.67 2
(CU457815) Zebrafish DNA sequence from clone CH211-12K12 in ... 48 0.94 1
(CT025544) Mouse DNA sequence from clone RP23-204K2 on chrom... 48 0.94 1
(AC158522) Mus musculus BAC clone RP23-400N21 from chromosom... 48 0.94 1
(AC118867) Rattus norvegicus clone CH230-458L22, *** SEQUENC... 48 0.94 1
(CU856221) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.94 1
(AC190337) Cavia porcellus clone CH234-185K3, WORKING DRAFT ... 48 0.94 1
(AC002376) Sequence of BAC T1G11 from Arabidopsis thaliana c... 42 0.97 5
(CZ947365) 291455 Tomato EcoRI BAC Library Solanum lycopersi... 34 0.99 3
(BH688339) BOMNJ85TR BO_2_3_KB Brassica oleracea genomic clo... 42 1.0 2
(BH164932) ENTSW30TF Entamoeba histolytica Sheared DNA Entam... 36 1.1 3
(AM473250) Vitis vinifera contig VV78X089388.5, whole genome... 38 1.2 2
(BX571853) Zebrafish DNA sequence from clone DKEY-29H14 in l... 40 1.3 8
(AC147632) Mus musculus BAC clone RP23-326H18 from chromosom... 46 1.4 4
(AM439248) Vitis vinifera contig VV79X007207.11, whole genom... 34 1.4 6
(EK294420) 1095462342281 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.4 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 1.4 13
(AC196241) Pan troglodytes chromosome 17 clone CH251-656L24,... 42 1.6 4
(AY376688) Crinipellis perniciosa mitochondrion, complete ge... 36 1.8 8
(CR762403) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 1.9 2
(CR450818) Zebrafish DNA sequence from clone DKEY-172M14 in ... 32 1.9 2
(AP009483) Solanum lycopersicum DNA, chromosome 8, clone: C0... 34 2.0 10
(EE135950) SiJWC04AAW Lausanne fire ant library Solenopsis i... 34 2.0 3
(AC230988) Bos taurus clone CH240-494A7, WORKING DRAFT SEQUE... 36 2.1 4
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 2.1 8
(AM480825) Vitis vinifera contig VV78X182381.6, whole genome... 40 2.1 2
(AB092755) Carabus buddaicus gansuicus ND5 gene for NADH deh... 32 2.5 2
(AB092754) Carabus buddaicus linxiaicus ND5 gene for NADH de... 32 2.5 2
(AB092753) Carabus gigolo gigolo ND5 gene for NADH dehydroge... 32 2.5 2
(AB092752) Carabus buddaicus obenbergeri ND5 gene for NADH d... 32 2.5 2
(AB092751) Carabus confucius kangdingensis ND5 gene for NADH... 32 2.5 2
(AB092750) Carabus confucius kangdingensis ND5 gene for NADH... 32 2.5 2
(AB092749) Carabus confucius kangdingensis ND5 gene for NADH... 32 2.5 2
(AB092748) Carabus confucius kangdingensis ND5 gene for NADH... 32 2.5 2
(AB050752) Carabus pusio mitochondrial ND5 gene for NADH deh... 32 2.5 2
(AB050751) Carabus pseudopusio mitochondrial ND5 gene for NA... 32 2.5 2
(AB017477) Carabus pusio mitochondrial ND5 gene, isolate: Go... 32 2.5 2
(AC096150) Rattus norvegicus clone CH230-10H19, *** SEQUENCI... 44 2.5 4
(EB453335) 1099341206536 12-DrosW-std-1P6Kb Drosophila willi... 36 2.7 2
(AX344506) Sequence 353 from Patent WO0200926. 38 2.8 5
(CT573353) M.truncatula DNA sequence from clone MTH2-124L21 ... 38 3.0 11
(AM615889) Entamoeba invadens IP1 GSS, clone inv071b05.q1k. 38 3.0 3
(AM604653) Entamoeba invadens IP1 GSS, clone inv041a12.p1k. 40 3.2 3
(CN576584) rf29d03.x1 Meloidogyne hapla J2 pAMP1 v1 Meloidog... 32 3.5 3
(AC192322) Spermophilus tridecemlineatus clone VMRC20-373E3,... 36 3.6 8
(CT826397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.6 7
(AC186954) Musa acuminata clone MA4_111B14, *** SEQUENCING I... 40 3.7 3
(CU571090) Zebrafish DNA sequence from clone DKEY-48M11 in l... 46 3.7 1
(CT574553) Zebrafish DNA sequence from clone CH73-247P13 in ... 46 3.7 1
(CT025852) Zebrafish DNA sequence from clone DKEY-285A13 in ... 46 3.7 1
(CR854889) Zebrafish DNA sequence from clone DKEYP-72A3 in l... 46 3.7 1
(CR388164) Zebrafish DNA sequence from clone DKEY-74H17 in l... 46 3.7 1
(BX901876) Zebrafish DNA sequence from clone CH211-140G2 in ... 46 3.7 1
(BX511272) Zebrafish DNA sequence from clone DKEY-276L13 in ... 46 3.7 1
(BX000520) Mouse DNA sequence from clone RP23-261N8 on chrom... 46 3.7 1
(AL671991) Mouse DNA sequence from clone RP23-343L7 on chrom... 46 3.7 1
(AL645848) Mouse DNA sequence from clone RP23-133B13 on chro... 46 3.7 1
(AC166107) Mus musculus BAC clone RP23-205A7 from chromosome... 46 3.7 1
(AC138263) Mus musculus chromosome 6, clone RP23-291O5, comp... 46 3.7 1
(AC124425) Mus musculus BAC clone RP24-230N16 from chromosom... 46 3.7 1
(CU633157) PTB-088N14, complete sequence. 46 3.7 1
(CU372930) CH251-89E23, complete sequence. 46 3.7 1
(BS000110) Pan troglodytes chromosome 22 clone:PTB-090P24, m... 46 3.7 1
(AC192191) Pan troglodytes BAC clone CH251-175C16 from chrom... 46 3.7 1
(AM471020) Vitis vinifera contig VV78X052777.21, whole genom... 46 3.7 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 46 3.7 1
(AC011065) Drosophila melanogaster, chromosome 2L, region 33... 46 3.7 1
(AP001710) Homo sapiens genomic DNA, chromosome 21q, section... 46 3.7 1
(AP000247) Homo sapiens genomic DNA, chromosome 21q, clone:R... 46 3.7 1
>(AF318287) Dictyostelium discoideum putative calmodulin-binding
protein CamBP64 mRNA, complete cds.
Length = 1841
Score = 1348 bits (680), Expect = 0.0
Identities = 701/710 (98%)
Strand = Plus / Plus
Query: 674 attatcaattgatggtagtgtctcaagcggtagtggttccaatgacgatccaacttgtat 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 attatcaattgatggtagtgtctcaagcggtagtggttccaatgacgatccaacttgtat 1173
Query: 734 tttanaaccaattgactgtgatgataatgatgaatgtaccgttgatgaatgttcaataac 793
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 tttagaaccaattgactgtgatgataatgatgaatgtaccgttgatgaatgttcaataac 1233
Query: 794 aagtggatgtaaacatacggtttgtccaaatttagataaatctggtaaaactgaaattaa 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 aagtggatgtaaacatacggtttgtccaaatttagataaatctggtaaaactgaaattaa 1293
Query: 854 atgtgtaaatggaaaatgccaaacacgtgttaaatcaccttgtgaattgatgacttgtcc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 atgtgtaaatggaaaatgccaaacacgtgttaaatcaccttgtgaattgatgacttgtcc 1353
Query: 914 aaatgatactatttgcattgaaaattataataacactaaaaacttgacaatttgtttacc 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 aaatgatactatttgcattgaaaattataataacactaaaaacttgacaatttgtttacc 1413
Query: 974 aattgaatgttccataaataattgtgatgatggtaatgggtgtactatcgattcttgtaa 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 aattgaatgttccataaataattgtgatgatggtaatgggtgtactatcgattcttgtaa 1473
Query: 1034 tttccaaacaggattttgtgatcatttactttgcccaaacaaatatttggatccaattac 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 tttccaaacaggattttgtgatcatttactttgcccaaacaaatatttggatccaattac 1533
Query: 1094 aaatcatacaacaattccaatctgtgaaaataataaatgtgtaaacaaaactctctcaaa 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 aaatcatacaacaattccaatctgtgaaaataataaatgtgtaaacaaaactctctcaaa 1593
Query: 1154 ttgtgaatattttaaatgcgatcatccaaatgaaatttgcatagaagagaaaataactct 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 ttgtgaatattttaaatgcgatcatccaaatgaaatttgcatagaagagaaaataactct 1653
Query: 1214 tgctccaaaatgtgttcatttcgatagtggttgtttatcttgttctgatttaaattgcca 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 tgctccaaaatgtgttcatttcgatagtggttgtttatcttgttctgatttaaattgcca 1713
Query: 1274 atcattaacttctccaaattcaagatgtaaatatattgaaatggataatcaaaaattacg 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 atcattaacttctccaaattcaagatgtaaatatattgaaatggataatcaaaaattacg 1773
Query: 1334 ttgtaaaggttcggttggttcctgntggccctanttaccnaccngntatt 1383
||||||||||||||||||||| || || || || ||||| ||| | ||||
Sbjct: 1774 ttgtaaaggttcggttggttcttgttgtccttatttaccaacctgttatt 1823
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 97 catgaaggccatagttttaattatttttattttattaatcaataatcaaattgtaaaaac 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 catgaaggccatagttttaattatttttattttattaatcaataatcaaattgtaaaaac 138
Query: 157 ttgggatcaaaatgatgttaaacaattttttaacaattatccatttggtattaaatctag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ttgggatcaaaatgatgttaaacaattttttaacaattatccatttggtattaaatctag 198
Query: 217 tagtggattttattatgatactcaagtttcaacactgaatggaacaatttatggatttac 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tagtggattttattatgatactcaagtttcaacactgaatggaacaatttatggatttac 258
Query: 277 aaagaatggatttgttgattttccagagaatccaggatttgaagagtcaggattttattt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaagaatggatttgttgattttccagagaatccaggatttgaagagtcaggattttattt 318
Query: 337 agaccaatcagttgatatggttgaagatagattgggagcagatggtagaccagtttataa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agaccaatcagttgatatggttgaagatagattgggagcagatggtagaccagtttataa 378
Query: 397 aaatggtaatgaaccattcattgttacaaataaggaaactggtaaacaatttacattggc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaatggtaatgaaccattcattgttacaaataaggaaactggtaaacaatttacattggc 438
Query: 457 acataattcatcaacattttatgattggtttcattcaagtccatgtgtgaattatccatt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acataattcatcaacattttatgattggtttcattcaagtccatgtgtgaattatccatt 498
Query: 517 aaatggtagtatatggattacaaagaatgctttacaaggtgttgcatttaaaccaacaaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaatggtagtatatggattacaaagaatgctttacaaggtgttgcatttaaaccaacaaa 558
Query: 577 cgacgtttatccatacgatatcggaactcaagataatcaattaccctatttccatcattc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cgacgtttatccatacgatatcggaactcaagataatcaattaccctatttccatcattc 618
Query: 637 tactttctctttaaatttttatcttc 662
||||||||||||||||||||||||||
Sbjct: 619 tactttctctttaaatttttatcttc 644
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,648,413,244
Number of extensions: 104339232
Number of successful extensions: 9599660
Number of sequences better than 10.0: 170
Length of query: 1452
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1428
Effective length of database: 97,308,875,965
Effective search space: 138957074878020
Effective search space used: 138957074878020
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.28 |
| Homology vs Protein |
Query= Contig-U10800-1 (Contig-U10800-1Q) /CSM_Contig/Contig-U10800-1Q.Seq.d
(1452 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 88 7e-16
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 88 9e-16
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 82 4e-14
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 80 1e-13
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 75 5e-12
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 75 8e-12
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 75 8e-12
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 74 1e-11
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 68 1e-09
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 67 2e-09
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 61 9e-08
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 56 4e-06
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 55 8e-06
(Q80YX1) RecName: Full=Tenascin; Short=TN; AltName: Ful... 54 1e-05
AL732556_3(AL732556|pid:none) Mouse DNA sequence from clone RP24... 54 1e-05
AL732556_1(AL732556|pid:none) Mouse DNA sequence from clone RP24... 54 1e-05
BC151843_1(BC151843|pid:none) Homo sapiens tenascin C, mRNA (cDN... 52 4e-05
AB210038_1(AB210038|pid:none) Homo sapiens mRNA for TNC variant ... 52 5e-05
X56160_1(X56160|pid:none) Human mRNA for tenascin. 52 5e-05
AK304015_1(AK304015|pid:none) Homo sapiens cDNA FLJ60213 complet... 52 5e-05
(P24821) RecName: Full=Tenascin; Short=TN; AltName: Ful... 52 7e-05
EU596506_1(EU596506|pid:none) Rattus norvegicus tenascin C (Tnc)... 51 9e-05
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 50 2e-04
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 50 2e-04
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 50 3e-04
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT... 50 3e-04
BC163556_1(BC163556|pid:none) Danio rerio tenascin C, mRNA (cDNA... 49 6e-04
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 49 6e-04
AM746676_9122(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 48 8e-04
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso... 48 0.001
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 47 0.002
A55035(A55035;S45034) cysteine-rich protein CRP1 - earthworm (En... 45 0.009
Z98877_8(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, comp... 44 0.011
BC071284_1(BC071284|pid:none) Danio rerio tenascin W, mRNA (cDNA... 44 0.011
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 44 0.011
AE001362_158(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.019
F71606(F71606)probable multiple transmembrane domain protein PFB... 44 0.019
AB031297_1(AB031297|pid:none) Sarcophaga peregrina mRNA for 120-... 43 0.025
CP000113_6294(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 43 0.033
AY265358_1(AY265358|pid:none) Homo sapiens glycoprotein receptor... 42 0.043
AC007556_2(AC007556|pid:none) Homo sapiens BAC clone RP11-18C9 f... 42 0.043
(P98164) RecName: Full=Low-density lipoprotein receptor-related ... 42 0.043
AY265357_1(AY265357|pid:none) Homo sapiens glycoprotein receptor... 42 0.043
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 42 0.043
AF483029_1(AF483029|pid:none) Boltenia villosa tenascin-x like p... 42 0.043
AM055942_182(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 42 0.043
BX004856_1(BX004856|pid:none) Zebrafish DNA sequence from clone ... 42 0.056
AF374376_24(AF374376|pid:none) Oikopleura dioica clone BAC clone... 42 0.056
DQ096731_1(DQ096731|pid:none) Danio rerio tenascin-C (TNC) mRNA,... 42 0.056
AB292627_1(AB292627|pid:none) Lethenteron japonicum LjNotchA mRN... 42 0.056
AF315555_1(AF315555|pid:none) Caenorhabditis briggsae notch-like... 42 0.056
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 41 0.095
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 41 0.12
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 41 0.12
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 41 0.12
(P49013) RecName: Full=Fibropellin-3; AltName: Full=Fibropellin ... 41 0.12
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 41 0.12
CR954212_161(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 41 0.12
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 40 0.16
(P17053) RecName: Full=G surface protein, allelic form 168; Flag... 40 0.16
BC140725_1(BC140725|pid:none) Homo sapiens keratin associated pr... 40 0.16
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 40 0.16
L14815_1(L14815|pid:none) Entamoeba histolytica HM-1:IMSS galact... 40 0.16
FN357705_6(FN357705|pid:none) Schistosoma mansoni genome sequenc... 40 0.21
AB077987_1(AB077987|pid:none) Halocynthia roretzi mRNA for HrDel... 40 0.21
CP001131_1246(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 40 0.21
FN357705_5(FN357705|pid:none) Schistosoma mansoni genome sequenc... 40 0.21
FN357705_7(FN357705|pid:none) Schistosoma mansoni genome sequenc... 40 0.21
AY553633_1(AY553633|pid:none) Paramecium primaurelia surface ant... 40 0.21
AL034559_42(AL034559|pid:none) Plasmodium falciparum MAL3P7, com... 40 0.21
AF491458_1(AF491458|pid:none) Caenorhabditis briggsae strain PB8... 40 0.28
AB209735_1(AB209735|pid:none) Homo sapiens mRNA for fibrillin 2 ... 40 0.28
AL929358_25(AL929358|pid:none) Plasmodium falciparum strain 3D7,... 40 0.28
AF491460_1(AF491460|pid:none) Caenorhabditis briggsae strain AF1... 40 0.28
AF491463_1(AF491463|pid:none) Caenorhabditis briggsae strain VT8... 40 0.28
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ... 39 0.36
Y10354_1(Y10354|pid:none) D.rerio notch6 mRNA. 39 0.36
AY465051_1(AY465051|pid:none) Cryptosporidium parvum chromosome ... 39 0.36
AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind... 39 0.36
AF007248_1(AF007248|pid:none) Mus musculus mutant fibrillin-1 (F... 39 0.47
(P35555) RecName: Full=Fibrillin-1; Flags: Precursor; &L13923_1... 39 0.47
X63556_1(X63556|pid:none) H.sapiens mRNA for fibrillin. 39 0.47
AP007174_189(AP007174|pid:none) Aspergillus oryzae RIB40 genomic... 39 0.47
U19972_1(U19972|pid:none) Mus musculus fibrillin-1 mRNA, partial... 39 0.47
AF135059_1(AF135059|pid:none) Rattus norvegicus fibrillin-1 mRNA... 39 0.47
DQ234084_1(DQ234084|pid:none) Paramecium tetraurelia A51 surface... 39 0.47
AF036687_2(AF036687|pid:none) Caenorhabditis elegans cosmid C08G... 39 0.47
AK220196_1(AK220196|pid:none) Mus musculus mRNA for mKIAA4226 pr... 39 0.47
AB177802_1(AB177802|pid:none) Homo sapiens FBN1 gene for fibrill... 39 0.47
BC172946_1(BC172946|pid:none) Synthetic construct Mus musculus c... 39 0.47
AL844547_6(AL844547|pid:none) Mouse DNA sequence from clone RP23... 39 0.47
T32497(T32497)hypothetical protein C08G9.2 - Caenorhabditis eleg... 39 0.47
X62009_1(X62009|pid:none) Homo sapiens partial mRNA for fibrilli... 39 0.62
AE014134_2524(AE014134|pid:none) Drosophila melanogaster chromos... 39 0.62
(O88799) RecName: Full=Zonadhesin; Flags: Precursor; &T42215(T4... 39 0.62
AF501275_1(AF501275|pid:none) Entamoeba histolytica clone C3 Gal... 39 0.62
AF491459_1(AF491459|pid:none) Caenorhabditis briggsae strain HK1... 39 0.62
(A2ARV4) RecName: Full=Low-density lipoprotein receptor-related ... 38 0.81
BC119982_1(BC119982|pid:none) Bos taurus keratin associated prot... 38 0.81
(Q61810) RecName: Full=Latent-transforming growth factor beta-bi... 38 0.81
AF115477_1(AF115477|pid:none) Giardia intestinalis genotype A-II... 38 0.81
AJ133651_1(AJ133651|pid:none) Trichoderma harzianum cmp1 gene. 38 0.81
(P98158) RecName: Full=Low-density lipoprotein receptor-related ... 38 0.81
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 38 0.81
(P13508) RecName: Full=Protein glp-1; Flags: Precursor; &A32901... 38 0.81
L40459_1(L40459|pid:none) Mus musculus latent transforming growt... 38 0.81
AM746676_6052(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 38 1.1
(Q9NZR2) RecName: Full=Low-density lipoprotein receptor-related ... 38 1.1
BX293980_512(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 38 1.1
L33862_1(L33862|pid:none) Sea urchin fibropellin III mRNA, 3' end. 38 1.1
A23475(A23475)G surface protein - Paramecium primaurelia 38 1.1
BX510920_1(BX510920|pid:none) Zebrafish DNA sequence from clone ... 38 1.1
FJ147085_1(FJ147085|pid:none) Fenneropenaeus chinensis Kazal-typ... 38 1.1
AF283374_1(AF283374|pid:none) Homo sapiens candidate tumor suppr... 38 1.1
BC143738_1(BC143738|pid:none) Homo sapiens integrin, beta 4, mRN... 37 1.4
(P16144) RecName: Full=Integrin beta-4; AltName: Full=GP150; Alt... 37 1.4
A36429(S12380;S08465;A36429;S06963;B33534)integrin beta-4 chain ... 37 1.4
AK131126_1(AK131126|pid:none) Mus musculus premature mRNA for mF... 37 1.4
AF011375_1(AF011375|pid:none) Homo sapiens integrin variant beta... 37 1.4
BC126411_1(BC126411|pid:none) Homo sapiens integrin, beta 4, mRN... 37 1.4
AE014296_1363(AE014296|pid:none) Drosophila melanogaster chromos... 37 1.4
AK304792_1(AK304792|pid:none) Homo sapiens cDNA FLJ60224 complet... 37 1.4
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A... 37 1.4
BX276181_1(BX276181|pid:none) Zebrafish DNA sequence from clone ... 37 1.4
U66541_2(U66541|pid:none) Human beta4-integrin (ITGB4) and alter... 37 1.4
BC118916_1(BC118916|pid:none) Homo sapiens integrin, beta 4, mRN... 37 1.4
AY262832_1(AY262832|pid:none) Solenopsis invicta vitellogenin re... 37 1.4
T25768(T25768)hypothetical protein F46F11.7 - Caenorhabditis ele... 37 1.4
BC168401_1(BC168401|pid:none) Synthetic construct Mus musculus c... 37 1.4
U88173_9(U88173|pid:none) Caenorhabditis elegans cosmid F46F11, ... 37 1.4
CP000099_1162(CP000099|pid:none) Methanosarcina barkeri str. Fus... 37 1.4
AF135060_1(AF135060|pid:none) Rattus norvegicus fibrillin-2 mRNA... 37 1.4
X52186_1(X52186|pid:none) Human mRNA for integrin beta-4 subunit. 37 1.4
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el... 37 1.4
X53587_1(X53587|pid:none) Human mRNA for integrin beta 4. 37 1.4
BT032860_1(BT032860|pid:none) Drosophila melanogaster RE24628 fu... 37 1.4
BC109238_1(BC109238|pid:none) Homo sapiens integrin, beta 4, mRN... 37 1.4
FJ188470_1(FJ188470|pid:none) Gallus gallus disintegrin and meta... 37 1.8
AM050637_1(AM050637|pid:none) Blattella germanica mRNA for vitel... 37 1.8
AC115680_32(AC115680|pid:none) Dictyostelium discoideum chromoso... 37 1.8
U13071_2(U13071|pid:none) Caenorhabditis elegans cosmid T22F7, c... 37 1.8
AF337951_1(AF337951|pid:none) Entamoeba histolytica Gal/GalNAc l... 37 1.8
H88380(H88380)protein T22F7.3 [imported] - Caenorhabditis elegans 37 1.8
AM746676_2642(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 2.3
FM209056_1(FM209056|pid:none) Homo sapiens mRNA for Eyes shut ho... 37 2.3
(O75077) RecName: Full=Disintegrin and metalloproteinase domain-... 37 2.3
S28291(S28291)hypothetical protein ZC84.1 - Caenorhabditis elegans 37 2.3
AF501273_1(AF501273|pid:none) Entamoeba histolytica clone C1 Gal... 37 2.3
EU974210_1(EU974210|pid:none) Zea mays clone 442907 keratin-asso... 37 2.3
AB218869_1(AB218869|pid:none) Rhyparobia maderae LpR mRNA for Li... 37 2.3
EU854566_1(EU854566|pid:none) Danio rerio fibrillin 4 (fbn4) mRN... 37 2.3
AM910992_94(AM910992|pid:none) Plasmodium knowlesi strain H chro... 37 2.3
AJ698732_1(AJ698732|pid:none) Danio rerio partial mRNA for matri... 37 2.3
CP000113_6723(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 37 2.3
AK296844_1(AK296844|pid:none) Homo sapiens cDNA FLJ53382 complet... 37 2.3
AF369477_1(AF369477|pid:none) Mus musculus strain 129P3/J lipopr... 36 3.1
AK313587_1(AK313587|pid:none) Homo sapiens cDNA, FLJ94152, highl... 36 3.1
CP000826_4316(CP000826|pid:none) Serratia proteamaculans 568, co... 36 3.1
AF288451_1(AF288451|pid:none) Xenopus laevis LTBP-1S protein mRN... 36 3.1
TSHUP4(A55710;S36069) thrombospondin 4 precursor - human &Z1958... 36 3.1
(Q91ZX7) RecName: Full=Prolow-density lipoprotein receptor-relat... 36 3.1
CR548612_409(CR548612|pid:none) Paramecium tetraurelia macronucl... 36 3.1
S59073(S59073)metallothionein isoform IIa - blue crab 36 3.1
S25111(S25111;S32554) alpha-2-macroglobulin receptor precursor -... 36 3.1
AC024830_9(AC024830|pid:none) Caenorhabditis elegans cosmid Y55F... 36 3.1
AF399011_284(AF399011|pid:none) Pseudomonas phage phiKZ, complet... 36 3.1
CP001056_397(CP001056|pid:none) Clostridium botulinum B str. Ekl... 36 3.1
AK299277_1(AK299277|pid:none) Homo sapiens cDNA FLJ53170 complet... 36 3.1
EF566886_2(EF566886|pid:none) Hydractinia symbiolongicarpus CnPo... 36 3.1
(P55950) RecName: Full=Metallothionein-2B; Short=MT-2B;... 36 3.1
BT029727_1(BT029727|pid:none) Drosophila melanogaster IP17596 fu... 36 4.0
EU854565_1(EU854565|pid:none) Danio rerio fibrillin 4 (fbn4) mRN... 36 4.0
AB043893_1(AB043893|pid:none) Mus musculus dll-4 mRNA for Delta-... 36 4.0
BX005301_9(BX005301|pid:none) Zebrafish DNA sequence from clone ... 36 4.0
AE014297_4237(AE014297|pid:none) Drosophila melanogaster chromos... 36 4.0
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 36 4.0
AB209498_1(AB209498|pid:none) Homo sapiens mRNA for low density ... 36 4.0
AX647605_1(AX647605|pid:none) Sequence 1797 from Patent EP1270724. 36 4.0
AY805407_1(AY805407|pid:none) Danio rerio notch1b mRNA, complete... 36 4.0
(Q9JI71) RecName: Full=Delta-like protein 4; AltName: Full=Droso... 36 4.0
Z98877_13(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com... 36 4.0
AL805948_1(AL805948|pid:none) Mouse DNA sequence from clone RP23... 36 4.0
(Q9JI18) RecName: Full=Low-density lipoprotein receptor-related ... 36 4.0
AM180255_37(AM180255|pid:none) Lawsonia intracellularis PHE/MN1-... 36 4.0
(P13829) RecName: Full=25 kDa ookinete surface antigen; AltName:... 35 5.2
AY286489_1(AY286489|pid:none) Danio rerio tenascin-R mRNA, compl... 35 5.2
CP000158_2942(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 35 5.2
AB076354_1(AB076354|pid:none) Homo sapiens KRTAP18.7 mRNA for ke... 35 5.2
CP000251_2584(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 35 5.2
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 35 5.2
BT033001_1(BT033001|pid:none) Drosophila melanogaster IP21817 fu... 35 5.2
BX323843_5(BX323843|pid:none) Zebrafish DNA sequence from clone ... 35 5.2
(Q9NS15) RecName: Full=Latent-transforming growth factor beta-bi... 35 6.8
AJ409106_2(AJ409106|pid:none) Entamoeba histolytica vsp gene for... 35 6.8
AK024477_1(AK024477|pid:none) Homo sapiens mRNA for FLJ00070 pro... 35 6.8
S18188(S18188)notch protein homolog - rat 35 6.8
CP000084_673(CP000084|pid:none) Candidatus Pelagibacter ubique H... 35 6.8
AK124524_1(AK124524|pid:none) Homo sapiens cDNA FLJ42533 fis, cl... 35 6.8
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;... 35 6.8
BC008761_1(BC008761|pid:none) Homo sapiens latent transforming g... 35 6.8
AX647129_1(AX647129|pid:none) Sequence 1321 from Patent EP1270724. 35 6.8
BC145487_1(BC145487|pid:none) Mus musculus slit homolog 2 (Droso... 35 6.8
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co... 35 6.8
AF135960_1(AF135960|pid:none) Homo sapiens latent transforming g... 35 6.8
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909.... 35 6.8
AM910996_104(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 6.8
AB112441_1(AB112441|pid:none) Ciona intestinalis Ci-VWFL1 mRNA f... 35 6.8
AK299351_1(AK299351|pid:none) Homo sapiens cDNA FLJ59398 complet... 35 6.8
AJ507290_1(AJ507290|pid:none) Cupiennius salei mRNA for Delta2 p... 35 6.8
AL592545_3(AL592545|pid:none) Mouse DNA sequence from clone RP23... 35 6.8
AB062684_1(AB062684|pid:none) Bombyx mori CB10 mRNA for wing dis... 35 6.8
AK298858_1(AK298858|pid:none) Homo sapiens cDNA FLJ55349 complet... 35 8.9
AF055585_1(AF055585|pid:none) Homo sapiens neurogenic extracellu... 35 8.9
EU595016_1(EU595016|pid:none) Myxobolus cerebralis clone 1J4 hyp... 35 8.9
AP008215_740(AP008215|pid:none) Oryza sativa (japonica cultivar-... 35 8.9
AY040345_1(AY040345|pid:none) Danio rerio coagulation factor VII... 35 8.9
AP005419_8(AP005419|pid:none) Oryza sativa Japonica Group genomi... 35 8.9
L80071_1(L80071|pid:none) Paramecium tetraurelia immobilization ... 35 8.9
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 35 8.9
FM177140_526(FM177140|pid:none) Lactobacillus casei BL23 complet... 35 8.9
Z81138_1(Z81138|pid:none) Caenorhabditis elegans Cosmid W05B2, c... 35 8.9
(O94813) RecName: Full=Slit homolog 2 protein; Short=Sl... 35 8.9
AL389894_18(AL389894|pid:none) Leishmania major Friedlin chromos... 35 8.9
BC143978_1(BC143978|pid:none) Homo sapiens slit homolog 2 (Droso... 35 8.9
BC047187_1(BC047187|pid:none) Danio rerio very low density lipop... 35 8.9
AE014185_25(AE014185|pid:none) Plasmodium falciparum 3D7 chromos... 35 8.9
BT045323_1(BT045323|pid:none) Salmo salar clone ssal-rgf-518-160... 35 8.9
U73710_1(U73710|pid:none) Entamoeba dispar Gal/GalNAc-inhibitabl... 35 8.9
EU955480_1(EU955480|pid:none) Zea mays clone 1534022 unknown mRNA. 35 8.9
FJ501956_1(FJ501956|pid:none) Oryza sativa Indica Group keratin ... 35 8.9
BC172897_1(BC172897|pid:none) Synthetic construct Homo sapiens c... 35 8.9
(Q9QXX0) RecName: Full=Protein jagged-1; Short=Jagged1;... 35 8.9
>A26838(A26838)prestalk protein precursor - slime mold (Dictyostelium
discoideum)
Length = 1046
Score = 88.2 bits (217), Expect = 7e-16
Identities = 59/190 (31%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Frame = +3
Query: 741 PIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCVNGKCQTRVKSPCELMTCPND 920
PI+CDDN++CTVD CS ++GC H T I+C + +PC + +C N
Sbjct: 383 PINCDDNNKCTVDSCSNSTGCCH-----------TPIRCDD-------NNPCTVDSCSNS 424
Query: 921 TICIENYNNTKNLTICLPIECSINN--------CDDGNGCTIDSCNFQTGFCDHLLCPNK 1076
T C+ N + C +C+ N CDD N CT+DSC+ TG C
Sbjct: 425 TGCVHTPINVDDNNACTEDKCTQNGGVTHTPIACDDKNACTVDSCSNSTGCC-------- 476
Query: 1077 YLDPITNHTTIPICENNKCVNKTLSNCEYFKCDH------PNEICIEEKITLAPKCVHFD 1238
HT + +NN C + SN C H N C E+K T + H
Sbjct: 477 -------HTPLKCDDNNACTVDSCSNST--GCVHTPINVDDNNACTEDKCTQSGGVTHTP 527
Query: 1239 SGCLSCSDLN 1268
+SC D N
Sbjct: 528 ---ISCDDKN 534
Score = 87.8 bits (216), Expect = 9e-16
Identities = 74/260 (28%), Positives = 99/260 (38%), Gaps = 52/260 (20%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCV---------------- 860
C+ P+ CDDN+ CTVD CS ++GC HT D + TE KC
Sbjct: 619 CVHTPLTCDDNNPCTVDSCSNSTGCCHTPINVDDHNACTEDKCTQSGGVTHTPIACDDKN 678
Query: 861 ----------NGKCQTRV----KSPCELMTCPNDTICIENYNNTKNLTICLPIECSINN- 995
G C T + + C + +C N T C+ N + C +C+ N
Sbjct: 679 ACTVDSCSNSTGCCHTPLSCDDNNACTVDSCSNSTGCVHTPINVDDNNACTEDKCTQNGG 738
Query: 996 -------CDDGNGCTIDSCNFQTGFCDHLLCPNKYLDPITNHTTIPICENNKCVNKTLSN 1154
CDD N CT+DSC+ TG C HT + +NN C + SN
Sbjct: 739 VTHTPIACDDKNACTVDSCSNSTGCC---------------HTPLKCDDNNPCTVDSCSN 783
Query: 1155 CEYFKCDH------PNEICIEEKITLAPKCVHFDSGCLSCSDLN-CQSLTSPNSR-CKYI 1310
C H N C E+K T H + C DLN C + + NS C +
Sbjct: 784 ST--GCVHTPMNVDDNNACTEDKCTQNGGVTHTP---IRCDDLNSCTADSCSNSTGCVHT 838
Query: 1311 EM---DNQKL---RCKGSVG 1352
+ DN K C S G
Sbjct: 839 PINCDDNNKCTADSCSNSTG 858
Score = 85.9 bits (211), Expect = 3e-15
Identities = 64/230 (27%), Positives = 89/230 (38%), Gaps = 44/230 (19%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCV---------------- 860
C P+ CDDN+ CTVD CS ++GC HT + + TE KC+
Sbjct: 115 CCHTPLSCDDNNPCTVDSCSNSTGCCHTPINVVVHNACTEDKCIQLGVVTHTPIACDDKN 174
Query: 861 ----------NGKCQTRV----KSPCELMTCPNDTICIENYNNTKNLTICLPIECSINN- 995
G C T + +PC + +C N T C+ N + C +C+ +
Sbjct: 175 ACTVDSCSNSTGCCHTPLSCDDNNPCTVDSCSNSTGCVHTPINVDDHNACTEDKCTQSGG 234
Query: 996 -------CDDGNGCTIDSCNFQTGFCDHLLCPNKYLDPITNHTTIPICENNKCVNKTLSN 1154
CDD N CT DSC+ TG C HT I +NN C + SN
Sbjct: 235 VTHTPIACDDKNACTADSCSNSTGSC---------------HTPITCDDNNACTVDSCSN 279
Query: 1155 CEYFKCDH------PNEICIEEKITLAPKCVHFDSGCLSCSDLNCQSLTS 1286
C H N C E+K T + H ++C D N ++ S
Sbjct: 280 ST--GCCHTPINVDDNNACTEDKCTQSGGVTHTP---IACDDKNACTVDS 324
Score = 82.8 bits (203), Expect = 3e-14
Identities = 65/203 (32%), Positives = 85/203 (41%), Gaps = 17/203 (8%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCVNGKCQTRV------KS 890
C PI CDDN+ CTVD CS ++GC HT D + TE KC T K+
Sbjct: 403 CCHTPIRCDDNNPCTVDSCSNSTGCVHTPINVDDNNACTEDKCTQNGGVTHTPIACDDKN 462
Query: 891 PCELMTCPNDTICIENYNNTKNLTICLPIECSIN--------NCDDGNGCTIDSCNFQTG 1046
C + +C N T C + C CS + N DD N CT D C Q+G
Sbjct: 463 ACTVDSCSNSTGCCHTPLKCDDNNACTVDSCSNSTGCVHTPINVDDNNACTEDKCT-QSG 521
Query: 1047 FCDH--LLCPNKYLDPITNHTTIPICENNK-CVNKTLSNCEYFKCDHPNEICIEEKITLA 1217
H + C +K N TI C N+ CV+ +S CD N C + +
Sbjct: 522 GVTHTPISCDDK------NPCTIDSCSNSTGCVHTPMS------CDDRNP-CTSDFCSWE 568
Query: 1218 PKCVHFDSGCLSCSDLNCQSLTS 1286
C H LSC+D N ++ S
Sbjct: 569 KGCQHV---ALSCNDFNACTMDS 588
Score = 82.0 bits (201), Expect = 5e-14
Identities = 67/243 (27%), Positives = 93/243 (38%), Gaps = 40/243 (16%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCV---------------- 860
C P+ CDDN+ CTVD CS ++GC HT D + TE KC
Sbjct: 187 CCHTPLSCDDNNPCTVDSCSNSTGCVHTPINVDDHNACTEDKCTQSGGVTHTPIACDDKN 246
Query: 861 ----------NGKCQTRV----KSPCELMTCPNDTICIENYNNTKNLTICLPIECSINN- 995
G C T + + C + +C N T C N + C +C+ +
Sbjct: 247 ACTADSCSNSTGSCHTPITCDDNNACTVDSCSNSTGCCHTPINVDDNNACTEDKCTQSGG 306
Query: 996 -------CDDGNGCTIDSCNFQTGFCDH--LLCPNKYLDPITNHTTIPICENNKCVNKTL 1148
CDD N CT+DSC+ TG C H L C +K N T+ C N+ T
Sbjct: 307 VTHTPIACDDKNACTVDSCSNSTG-CVHTPLPCDDK------NPCTVDSCSNSTGCCHTP 359
Query: 1149 SNCEYFKCDHPNEICIEEKITLAPKCVHFDSGCLSCSDLNCQSLTSPNSRCKYIEMDNQK 1328
N + N C E+K T SG ++ + +NC N++C N
Sbjct: 360 INVD------DNNACTEDKCT--------QSGGVTHTPINCDD----NNKCTVDSCSNST 401
Query: 1329 LRC 1337
C
Sbjct: 402 GCC 404
Score = 79.0 bits (193), Expect = 4e-13
Identities = 57/200 (28%), Positives = 79/200 (39%), Gaps = 14/200 (7%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCVNGKCQTRVKSPCELMT 908
C PI CDD + CTVD CS ++GC H T + C + +PC + +
Sbjct: 595 CTHTPIACDDKNACTVDSCSNSTGCVH-----------TPLTCDD-------NNPCTVDS 636
Query: 909 CPNDTICIENYNNTKNLTICLPIECSINN--------CDDGNGCTIDSCNFQTGFCDHLL 1064
C N T C N + C +C+ + CDD N CT+DSC+ TG C
Sbjct: 637 CSNSTGCCHTPINVDDHNACTEDKCTQSGGVTHTPIACDDKNACTVDSCSNSTGCC---- 692
Query: 1065 CPNKYLDPITNHTTIPICENNKCVNKTLSNCEYFKCDH------PNEICIEEKITLAPKC 1226
HT + +NN C + SN C H N C E+K T
Sbjct: 693 -----------HTPLSCDDNNACTVDSCSNST--GCVHTPINVDDNNACTEDKCTQNGGV 739
Query: 1227 VHFDSGCLSCSDLNCQSLTS 1286
H ++C D N ++ S
Sbjct: 740 THTP---IACDDKNACTVDS 756
Score = 79.0 bits (193), Expect = 4e-13
Identities = 64/226 (28%), Positives = 91/226 (40%), Gaps = 26/226 (11%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCVNGKCQTRVKSPCELMT 908
C+ PI+CDDN++CT D CS ++GC H T I C + +PC + +
Sbjct: 835 CVHTPINCDDNNKCTADSCSNSTGCCH-----------TPISCDD-------NNPCTVDS 876
Query: 909 CPNDTICIENYNNTKNLTICLPIECSIN--------NCDDGNGCTIDSCNFQTGFCDHLL 1064
C N T C N + C +C+ + C+D N CT+DSC+ TG C H
Sbjct: 877 CSNSTGCCHTPINVDDNNPCTEDKCTQSGGVTHTPIGCNDNNACTVDSCSNSTG-CTH-- 933
Query: 1065 CPNKYLDPITNHTTIPICENNK-CVNK----------TLSNCEYFKCDH------PNEIC 1193
P K D N TI C N+ CV+ TL +C C H N C
Sbjct: 934 TPMKCDD--NNPCTIDSCSNSTGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPC 991
Query: 1194 IEEKITLAPKCVHFDSGCLSCSDLNCQSLT-SPNSRCKYIEMDNQK 1328
+ + VH C + L C + +C ++ M K
Sbjct: 992 TVDSCCNSTGVVHTPVDCNDNNVLTCDYCSIKQGGKCIHVPMTQCK 1037
Score = 74.7 bits (182), Expect = 8e-12
Identities = 55/188 (29%), Positives = 73/188 (38%), Gaps = 20/188 (10%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCVNGKCQTRV------KS 890
C+ P+ CDD + CT D CS GC+H D + T C N T K+
Sbjct: 547 CVHTPMSCDDRNPCTSDFCSWEKGCQHVALSCNDFNACTMDSCSNSTGCTHTPIACDDKN 606
Query: 891 PCELMTCPNDTICIENYNNTKNLTICLPIECSINNCDDGNGCTIDSCNFQTGFC------ 1052
C + +C N T C+ P+ CDD N CT+DSC+ TG C
Sbjct: 607 ACTVDSCSNSTGCVHT-----------PL-----TCDDNNPCTVDSCSNSTGCCHTPINV 650
Query: 1053 -DHLLCPNKYLDPI--TNHTTIPICENNKCVNKTLSN---CEY--FKCDHPNEICIEEKI 1208
DH C HT I + N C + SN C + CD N C +
Sbjct: 651 DDHNACTEDKCTQSGGVTHTPIACDDKNACTVDSCSNSTGCCHTPLSCD-DNNACTVDSC 709
Query: 1209 TLAPKCVH 1232
+ + CVH
Sbjct: 710 SNSTGCVH 717
Score = 73.9 bits (180), Expect = 1e-11
Identities = 56/185 (30%), Positives = 78/185 (42%), Gaps = 5/185 (2%)
Frame = +3
Query: 729 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTEIKCVNGKCQTRVKSPCELMT 908
C PI+ +DNDECTVD C+ +G HT D + T C+ GK V C+
Sbjct: 43 CSNTPININDNDECTVDTCNPKTGISHTPVNCDDGNSYTADSCLCGKGCQHVPIACD--- 99
Query: 909 CPNDTICIENYNNTKNLTICLPIECSINNCDDGNGCTIDSCNFQTGFCDHLLCPNKYLDP 1088
N+ +++ +N+ T C S CDD N CT+DSC+ TG C
Sbjct: 100 -DNNACTVDSCSNS---TGCCHTPLS---CDDNNPCTVDSCSNSTGCC------------ 140
Query: 1089 ITNHTTIPI-----CENNKCVNKTLSNCEYFKCDHPNEICIEEKITLAPKCVHFDSGCLS 1253
HT I + C +KC+ + CD N C + + + C H LS
Sbjct: 141 ---HTPINVVVHNACTEDKCIQLGVVTHTPIACDDKN-ACTVDSCSNSTGCCHTP---LS 193
Query: 1254 CSDLN 1268
C D N
Sbjct: 194 CDDNN 198
Score = 38.5 bits (88), Expect = 0.62
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Frame = +3
Query: 975 IECSIN-NCDDGNGCTIDSCNFQTGFC--------DHLLCPNKYLDPITNHTTIPI-CEN 1124
+ C+ + NC+DGN CT+D CN G C D+ C +P T + P+ C++
Sbjct: 19 VSCTCDENCNDGNKCTLDKCN--NGCCSNTPININDNDECTVDTCNPKTGISHTPVNCDD 76
Query: 1125 NKCVNKTLSNCEYFK-CDHPNEICIEEKITLAPKCVHFDSGC----LSCSDLN 1268
+ T +C K C H C + C + +GC LSC D N
Sbjct: 77 GN--SYTADSCLCGKGCQHVPIACDDNNACTVDSCSN-STGCCHTPLSCDDNN 126
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,138,147,223
Number of extensions: 44366255
Number of successful extensions: 116572
Number of sequences better than 10.0: 232
Number of HSP's gapped: 115132
Number of HSP's successfully gapped: 356
Length of query: 484
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 352
Effective length of database: 618,001,159
Effective search space: 217536407968
Effective search space used: 217536407968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
2 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
2 |
| CH (FL, L) |
3 |
| CF (FL, S) |
7 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |