| Contig-U10780-1 |
| Contig ID |
Contig-U10780-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1969 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
473470 |
| End point |
471512 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
10 |
| Number of EST |
15 |
| Link to clone list |
U10780 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.21 |
| Homology vs DNA |
Query= Contig-U10780-1 (Contig-U10780-1Q) /CSM_Contig/Contig-U10780-1Q.Seq.d
(1979 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ377769) Dictyostelium discoideum cDNA clone:ddc25h20, 3' ... 1172 0.0 1
(BJ363265) Dictyostelium discoideum cDNA clone:ddc25h20, 5' ... 1065 0.0 1
(BJ324476) Dictyostelium discoideum cDNA clone:dda6b15, 5' e... 803 0.0 2
(BJ414669) Dictyostelium discoideum cDNA clone:ddv20e06, 5' ... 821 0.0 3
(AU039540) Dictyostelium discoideum slug cDNA, clone SLE719. 965 0.0 1
(BJ327501) Dictyostelium discoideum cDNA clone:dda20n13, 5' ... 868 0.0 2
(BJ341396) Dictyostelium discoideum cDNA clone:dda6b15, 3' e... 926 0.0 1
(AU061585) Dictyostelium discoideum slug cDNA, clone SLE719. 872 0.0 1
(AU034702) Dictyostelium discoideum slug cDNA, clone SLE210. 837 0.0 1
(AU034832) Dictyostelium discoideum slug cDNA, clone SLE561. 817 0.0 1
(BJ344840) Dictyostelium discoideum cDNA clone:dda20n13, 3' ... 527 e-145 1
(AU061383) Dictyostelium discoideum slug cDNA, clone SLD872. 365 e-122 2
(BJ376702) Dictyostelium discoideum cDNA clone:ddc29g14, 3' ... 293 e-103 3
(BJ344540) Dictyostelium discoideum cDNA clone:dda19n13, 3' ... 202 4e-47 1
(BJ432850) Dictyostelium discoideum cDNA clone:ddv20e06, 3' ... 168 5e-37 1
(EC439442) 163927142 Sea Urchin Radial Nerve cDNA Library St... 52 0.013 2
(FD457511) EGGBE45TR Haematobia irritans eggs Haematobia irr... 30 0.059 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 52 0.083 1
(DN786063) 90141848 Sea Urchin primary mesenchyme cell cDNA ... 52 0.083 1
(DN560925) 92216916 Sea Urchin primary mesenchyme cell cDNA ... 52 0.083 1
(EJ098401) 1095462316349 Global-Ocean-Sampling_GS-26-01-01-1... 50 0.33 1
(CP000849) Rickettsia bellii OSU 85-389, complete genome. 50 0.33 1
(CP000087) Rickettsia bellii RML369-C, complete genome. 50 0.33 1
(FE235811) CAPG3559.fwd CAPG Naegleria gruberi amoeba stage ... 36 0.91 2
(FE267358) CAZO6067.fwd CAZO Naegleria gruberi Flagellate St... 36 0.91 2
(FE267357) CAZO6067.rev CAZO Naegleria gruberi Flagellate St... 36 0.92 2
(FE249252) CAPH2171.fwd CAPH Naegleria gruberi amoeba stage ... 36 0.92 2
(FE249051) CAPH2055.fwd CAPH Naegleria gruberi amoeba stage ... 36 0.92 2
(FE249050) CAPH2055.rev CAPH Naegleria gruberi amoeba stage ... 36 0.92 2
(FE249251) CAPH2171.rev CAPH Naegleria gruberi amoeba stage ... 36 0.93 2
(EK445364) 1095467027451 Global-Ocean-Sampling_GS-32-01-01-1... 42 1.2 3
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome. 48 1.3 16
(AC095825) Rattus norvegicus 4 BAC CH230-9J6 (Children's Hos... 48 1.3 1
(AC091353) Rattus norvegicus 4 BAC CH230-1B20 (Children's Ho... 48 1.3 1
(CT485668) Leptosphaeria maculans : genomic region surroundi... 48 1.3 1
(CT485659) Leptosphaeria maculans : genomic region surroundi... 48 1.3 1
(AM424632) Vitis vinifera contig VV78X170850.10, whole genom... 48 1.3 1
(AC104020) Homo sapiens chromosome 15, clone RP11-369K8, com... 48 1.3 1
(AC010617) Homo sapiens chromosome 19 clone CTD-2607J13, com... 48 1.3 1
(AC096872) Rattus norvegicus strain Brown Norway clone RP31-... 48 1.3 1
(AC041049) Homo sapiens chromosome 19 clone RP11-779O14, WOR... 48 1.3 1
(CU469072) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.3 1
(CU012049) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.3 1
(AC218550) Bos taurus clone CH240-311M15, WORKING DRAFT SEQU... 48 1.3 1
(AC218549) Bos taurus clone CH240-311M12, WORKING DRAFT SEQU... 48 1.3 1
(AC190343) Echinops telfairi clone CH238-67E22, WORKING DRAF... 48 1.3 1
(ET999971) CHO_OF001xm15f1.ab1 CHO_OF Nicotiana tabacum geno... 48 1.3 1
(ER029748) 1095521456387 Global-Ocean-Sampling_GS-33-01-01-1... 48 1.3 1
(AG406678) Mus musculus molossinus DNA, clone:MSMg01-265G12.... 48 1.3 1
(EE066157) C2B04850 Buds/little clusters (VvC2) Vitis vinife... 48 1.3 1
(EC924482) WIN025.TB24.1_I22 Cab Sauv flower, leaf and root ... 48 1.3 1
(EC921165) WIN012.B21_F05 Cab Sauv pericarp non-normalized (... 48 1.3 1
(DY889461) CeleSEQ11032 Cunninghamella elegans pBluescript (... 48 1.3 1
(DY889251) CeleSEQ8295 Cunninghamella elegans pBluescript (E... 48 1.3 1
(DY888759) CeleSEQ6055 Cunninghamella elegans pBluescript (E... 48 1.3 1
(DY887508) CeleSEQ3882 Cunninghamella elegans pBluescript (E... 48 1.3 1
(DY885994) CeleSEQ1458 Cunninghamella elegans pBluescript (E... 48 1.3 1
(DV938455) CSECS193B02_INFu0031 CabSau Immature Inflorescenc... 48 1.3 1
(CN175344) AGENCOURT_21031346 NIH_ZGC_8 Danio rerio cDNA clo... 48 1.3 1
(CN007477) CSECS150A09_NECu0025 CabSau Flower Nectary Stage ... 48 1.3 1
(CN006327) CSECS132B01_CELu0001 CabSau Cell Culture (CELu000... 48 1.3 1
(CN006310) CSECS131H01_CELu0001 CabSau Cell Culture (CELu000... 48 1.3 1
(CN006241) CSECS130G06_CELu0001 CabSau Cell Culture (CELu000... 48 1.3 1
(CF440575) EST676920 normalized cDNA library of onion Allium... 48 1.3 1
(CF215069) CAST0001_IIIR_C04 Vitis vinifera cv. cabernet sau... 48 1.3 1
(CF214989) CAST0001_IIIF_C04 Vitis vinifera cv. cabernet sau... 48 1.3 1
(EV237513) VV_PEc03D04.r.ab1 Vitis vinifera cv. perlette Lib... 48 1.3 1
(EV237512) VV_PEc03D04.f.ab1 Vitis vinifera cv. perlette Lib... 48 1.3 1
(CW319429) 104_812_11474484_116_35889_048 Sorghum methylatio... 34 1.5 4
(CL177607) 104_385_10893951_116_31914_015 Sorghum methylatio... 34 2.0 4
(CL177608) 104_385_10893951_148_31913_015 Sorghum methylatio... 34 2.1 4
(EK528969) 1095516000701 Global-Ocean-Sampling_GS-32-01-01-1... 34 2.9 4
(EY694786) CS00-C3-700-029-D01-CT.F Sweet orange fruit, deve... 36 3.4 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 46 5.0 11
(CU855825) H.parasitica DNA sequence from clone HpEmoy2-12G4. 46 5.1 1
(CT868736) M.truncatula DNA sequence from clone MTH2-25J4 on... 46 5.1 1
(CT485791) Leptosphaeria maculans : genomic region surroundi... 46 5.1 1
(CT485671) Leptosphaeria maculans : genomic region surroundi... 46 5.1 1
(CT485667) Leptosphaeria maculans : genomic region surroundi... 46 5.1 1
(CT485658) Leptosphaeria maculans : genomic region surroundi... 46 5.1 1
(CT485654) Leptosphaeria maculans : genomic region surroundi... 46 5.1 1
(AP007151) Aspergillus oryzae RIB40 genomic DNA, SC005. 46 5.1 1
(AM477441) Vitis vinifera contig VV78X229608.4, whole genome... 46 5.1 1
(AM424542) Vitis vinifera contig VV78X158137.17, whole genom... 46 5.1 1
(AB206761) Aspergillus oryzae gene for hypothetical protein,... 46 5.1 1
(EF206693) Fenneropenaeus chinensis VASA mRNA, complete cds. 46 5.1 1
(AC112641) Homo sapiens 3 BAC RP11-431I8 (Roswell Park Cance... 46 5.1 1
(AC079239) Homo sapiens BAC clone RP11-722M1 from 4, complet... 46 5.1 1
(AC125683) Rattus norvegicus clone CH230-11D7, *** SEQUENCIN... 46 5.1 1
(AC113769) Rattus norvegicus clone CH230-30L14, WORKING DRAF... 46 5.1 1
(CU856454) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.1 1
(AL355924) Human chromosome 3 DNA sequence *** IN PROGRESS *... 46 5.1 1
(AC230231) Bos taurus clone CH240-518C19, WORKING DRAFT SEQU... 46 5.1 1
(AC230204) Bos taurus clone CH240-518D4, WORKING DRAFT SEQUE... 46 5.1 1
(AC217604) Pteropus vampyrus clone CH279-391L9, WORKING DRAF... 46 5.1 1
(AC214327) Pteropus vampyrus clone CH279-269G18, WORKING DRA... 46 5.1 1
(AC196765) Medicago truncatula chromosome 7 clone mth2-83f5,... 46 5.1 1
(AC196023) Zea mays chromosome 4 clone CH201-121J7; ZMMBBc01... 46 5.1 1
(ED093731) AUAC-aat70b09.g1 Ascaris suum whole genome shotgu... 46 5.1 1
(DE900968) Macropus eugenii DNA, BAC clone: MEB1-081A20_R, 3... 46 5.1 1
>(BJ377769) Dictyostelium discoideum cDNA clone:ddc25h20, 3' end,
single read.
Length = 742
Score = 1172 bits (591), Expect = 0.0
Identities = 594/595 (99%)
Strand = Plus / Minus
Query: 1296 ccataatggaaacgattatagcagtggtactacaccaggtacaaattatagtttgtactc 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ccataatggaaacgattatagcagtggtactacaccaggtacaaattatagtttgtactc 573
Query: 1356 accttacacaccaaataccccattggatggttccaatagaagtgatccaaactatacacc 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 accttacacaccaaataccccattggatggttccaatagaagtgatccaaactatacacc 513
Query: 1416 atatgatcgttccactccttcaatgggttatggtaatgatccaaatccaacaccatccta 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atatgatcgttccactccttcaatgggttatggtaatgatccaaatccaacaccatccta 453
Query: 1476 tatgtcaaattatacaccacatgaaattccttcatcaccatacacaccacataatccaca 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatgtcaaattatacaccacatgaaattccttcatcaccatacacaccacataatccaca 393
Query: 1536 aacacccgcaactccaaactcaagtgaagatcatgacgaagaagttgaaccacaatattg 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aacacccgcaactccaaactcaagtgaagatcatgacgaagaagttgaaccacaatattg 333
Query: 1596 gtctggtacaaagattgaagtagtctttaaggattctggtaaacatgccgtagttttaga 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtctggtacaaagattgaagtagtctttaaggattctggtaaacatgccgtagttttaga 273
Query: 1656 taatctctctgattcaaccgttagagttgaaatgttagacaccaaagaagtaattgataa 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taatctctctgattcaaccgttagagttgaaatgttagacaccaaagaagtaattgataa 213
Query: 1716 tgtttcacaatctcaactcaatttggttccaccagctaaaaaagatcgtgtcgtcattgt 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tgtttcacaatctcaactcaatttggttccaccagctaaaaaagatcgtgtcgtcattgt 153
Query: 1776 taaaggtaaattatgtggtcaaagtggtaatcttttcattcttactgatgaaaatactgg 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 taaaggtaaattatgtggtcaaagtggtaatcttttcattcttactgatgaaaatactgg 93
Query: 1836 tatcgttaaaatgaattcaaactttgattttaaagttttcaaaatgtcttatatt 1890
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 92 tatcgttaaaatgaattcaaacttttattttaaagttttcaaaatgtcttatatt 38
Score = 65.9 bits (33), Expect = 5e-06
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1186 agtatgcgtgaatcatcggattacttttcatca 1218
|||||||||||||||||||||||||||||||||
Sbjct: 742 agtatgcgtgaatcatcggattacttttcatca 710
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,093,655,901
Number of extensions: 127005591
Number of successful extensions: 10154288
Number of sequences better than 10.0: 125
Length of query: 1979
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1955
Effective length of database: 97,308,875,965
Effective search space: 190238852511575
Effective search space used: 190238852511575
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 6.28 |
| Homology vs Protein |
Query= Contig-U10780-1 (Contig-U10780-1Q) /CSM_Contig/Contig-U10780-1Q.Seq.d
(1979 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC134446_1(BC134446|pid:none) Bos taurus suppressor of Ty 5 homo... 119 6e-51
AB463294_1(AB463294|pid:none) Synthetic construct DNA, clone: pF... 119 6e-51
AK302954_1(AK302954|pid:none) Homo sapiens cDNA FLJ55629 complet... 119 6e-51
BC129066_1(BC129066|pid:none) Xenopus laevis hypothetical protei... 116 1e-50
BC058598_1(BC058598|pid:none) Mus musculus suppressor of Ty 5 ho... 120 1e-50
BC057449_1(BC057449|pid:none) Mus musculus suppressor of Ty 5 ho... 119 2e-50
AK145117_1(AK145117|pid:none) Mus musculus mammary gland RCB-052... 119 2e-50
(O55201) RecName: Full=Transcription elongation factor SPT5; Alt... 119 2e-50
AK146453_1(AK146453|pid:none) Mus musculus 16 days embryo heart ... 119 2e-50
AK146055_1(AK146055|pid:none) Mus musculus 13 days pregnant adul... 119 2e-50
AK146583_1(AK146583|pid:none) Mus musculus 17 days embryo heart ... 119 2e-50
(Q9V460) RecName: Full=Transcription elongation factor SPT5; Alt... 113 2e-44
AM464739_2(AM464739|pid:none) Vitis vinifera contig VV78X257924.... 107 5e-40
(Q9STN3) RecName: Full=Putative transcription elongation factor ... 104 5e-40
BC057529_1(BC057529|pid:none) Danio rerio suppressor of Ty 5 hom... 114 7e-39
(O80770) RecName: Full=Putative transcription elongation factor ... 99 5e-37
(Q4PIC4) RecName: Full=Transcription elongation factor SPT5; Alt... 96 6e-36
CP000586_328(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 88 6e-35
AP008208_2684(AP008208|pid:none) Oryza sativa (japonica cultivar... 95 2e-34
FN357433_26(FN357433|pid:none) Schistosoma mansoni genome sequen... 102 2e-32
BC097843_1(BC097843|pid:none) Xenopus laevis hypothetical protei... 109 2e-28
AM270075_6(AM270075|pid:none) Aspergillus niger contig An04c0140... 78 5e-28
(Q6CC84) RecName: Full=Transcription elongation factor SPT5; Alt... 80 8e-28
AM920431_758(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 76 1e-27
(Q5BCN2) RecName: Full=Transcription elongation factor spt5; Alt... 78 2e-27
(Q2UGU3) RecName: Full=Transcription elongation factor spt5; Alt... 77 6e-27
AP004068_6(AP004068|pid:none) Oryza sativa Japonica Group genomi... 95 2e-26
(Q4WP96) RecName: Full=Transcription elongation factor spt5; Alt... 75 7e-26
(Q7S3C4) RecName: Full=Transcription elongation factor spt-5; Al... 75 9e-26
CU928176_547(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 74 1e-25
FM992689_136(FM992689|pid:none) Candida dubliniensis CD36 chromo... 70 4e-25
CU633866_107(CU633866|pid:none) Podospora anserina genomic DNA c... 73 1e-23
BX538353_28(BX538353|pid:none) Cryptosporidium parvum chromosome... 62 1e-18
(O13936) RecName: Full=Transcription elongation factor spt5; Alt... 89 4e-16
CR954206_356(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 84 2e-14
(Q6BZG0) RecName: Full=Transcription elongation factor SPT5; Alt... 77 2e-12
CP000496_142(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 75 9e-12
(Q5ALX3) RecName: Full=Transcription elongation factor SPT5; Alt... 70 4e-10
(P27692) RecName: Full=Transcription elongation factor SPT5; Alt... 69 8e-10
CU928171_156(CU928171|pid:none) Kluyveromyces thermotolerans str... 67 3e-09
BC123815_1(BC123815|pid:none) Bos taurus suppressor of Ty 5 homo... 64 2e-08
(Q6CWW9) RecName: Full=Transcription elongation factor SPT5; Alt... 64 2e-08
AE013599_3074(AE013599|pid:none) Drosophila melanogaster chromos... 62 1e-07
AM910993_383(AM910993|pid:none) Plasmodium knowlesi strain H chr... 61 1e-07
AL844505_107(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 60 2e-07
DQ491003_24(DQ491003|pid:none) Paramecium bursaria Chlorella vir... 60 2e-07
CR940352_786(CR940352|pid:none) Theileria annulata strain Ankara... 55 9e-06
AF525766_6(AF525766|pid:none) Trypanosoma cruzi unknown genes. 52 8e-05
S23006(S23006) shed acute-phase antigen - Trypanosoma cruzi &X5... 51 2e-04
D50685_1(D50685|pid:none) Trypanosoma cruzi TCTS-154 gene for tr... 49 5e-04
AY568677_1(AY568677|pid:none) Oryza sativa (japonica cultivar-gr... 48 0.001
AP005756_20(AP005756|pid:none) Oryza sativa Japonica Group genom... 47 0.002
D50684_1(D50684|pid:none) Trypanosoma cruzi TCTS-121 gene for tr... 47 0.003
CP000866_994(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 44 0.017
AB170791_1(AB170791|pid:none) Macaca fascicularis brain cDNA clo... 44 0.017
AK148418_1(AK148418|pid:none) Mus musculus B16 F10Y cells cDNA, ... 44 0.022
DQ912946_1(DQ912946|pid:none) Gossypium barbadense PDF mRNA, com... 44 0.022
AB125594_1(AB125594|pid:none) Mus musculus Skt-a mRNA for Sickle... 44 0.022
BC026657_1(BC026657|pid:none) Mus musculus enhancer trap locus 4... 44 0.022
AB125595_1(AB125595|pid:none) Mus musculus Skt-b mRNA for Sickle... 44 0.022
AK054453_1(AK054453|pid:none) Mus musculus 2 days pregnant adult... 44 0.022
AL929100_7(AL929100|pid:none) Mouse DNA sequence from clone RP23... 44 0.022
AM920437_1274(AM920437|pid:none) Penicillium chrysogenum Wiscons... 43 0.037
S20493(S20493)endoglucanase - Clostridium cellulovorans 42 0.063
AL353583_6(AL353583|pid:none) Human DNA sequence from clone RP11... 42 0.082
AL353583_8(AL353583|pid:none) Human DNA sequence from clone RP11... 42 0.082
AL353583_7(AL353583|pid:none) Human DNA sequence from clone RP11... 42 0.082
AY705808_1(AY705808|pid:none) Pinus halepensis clone 38 hypothet... 42 0.082
AK300422_1(AK300422|pid:none) Homo sapiens cDNA FLJ57813 complet... 42 0.082
BC098577_1(BC098577|pid:none) Homo sapiens KIAA1217, mRNA (cDNA ... 42 0.082
AB033043_1(AB033043|pid:none) Homo sapiens mRNA for KIAA1217 pro... 42 0.082
AL353583_5(AL353583|pid:none) Human DNA sequence from clone RP11... 42 0.082
AK319105_1(AK319105|pid:none) Arabidopsis thaliana AT3G24550 mRN... 42 0.082
BX640796_1(BX640796|pid:none) Homo sapiens mRNA; cDNA DKFZp686E0... 42 0.082
AP008217_1406(AP008217|pid:none) Oryza sativa (japonica cultivar... 42 0.11
CP001337_778(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 42 0.11
T38293(T38293)hypothetical serine-rich protein - fission yeast ... 42 0.11
AC116984_26(AC116984|pid:none) Dictyostelium discoideum chromoso... 41 0.14
AE016830_142(AE016830|pid:none) Enterococcus faecalis V583, comp... 41 0.18
AL035526_7(AL035526|pid:none) Arabidopsis thaliana DNA chromosom... 41 0.18
AF396668_1(AF396668|pid:none) Oryzias latipes choriogenin H gene... 40 0.24
AC084218_10(AC084218|pid:none) Oryza sativa (japonica cultivar-g... 40 0.31
DQ074901_1(DQ074901|pid:none) Lactobacillus reuteri unknown extr... 40 0.31
BT069624_1(BT069624|pid:none) Zea mays full-length cDNA clone ZM... 40 0.31
CP000511_4022(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 40 0.31
AE000516_4140(AE000516|pid:none) Mycobacterium tuberculosis CDC1... 40 0.31
AC099734_11(AC099734|pid:none) Oryza sativa (japonica cultivar-g... 40 0.31
AP008984_159(AP008984|pid:none) Cyprinid herpesvirus 3 DNA, comp... 40 0.31
CR382129_889(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 40 0.31
AP008211_298(AP008211|pid:none) Oryza sativa (japonica cultivar-... 40 0.31
AP008207_2388(AP008207|pid:none) Oryza sativa (japonica cultivar... 40 0.31
AY878587_1(AY878587|pid:none) Plasmodium falciparum isolate F3 t... 40 0.41
CP000806_607(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul... 40 0.41
AP008214_659(AP008214|pid:none) Oryza sativa (japonica cultivar-... 40 0.41
AF500195_1(AF500195|pid:none) Oryzias latipes choriogenin H gene... 40 0.41
AF489954_1(AF489954|pid:none) Physcomitrella patens BIP4 mRNA, c... 39 0.53
BT044989_1(BT044989|pid:none) Salmo salar clone ssal-rgf-509-080... 39 0.53
EU967784_1(EU967784|pid:none) Zea mays clone 306051 36.4 kDa pro... 39 0.53
CP000485_1845(CP000485|pid:none) Bacillus thuringiensis str. Al ... 39 0.53
GN034495_1(GN034495|pid:none) Sequence 137 from Patent EP2023143... 39 0.69
CR940347_15(CR940347|pid:none) Theileria annulata strain Ankara ... 39 0.69
M76671_1(M76671|pid:none) L.esculentum extensin (class II) gene,... 39 0.69
DQ657948_145(DQ657948|pid:none) Koi herpesvirus strain KHV-U, co... 39 0.69
AB273717_1(AB273717|pid:none) Nicotiana plumbaginifolia NpLRX1 m... 39 0.69
AY728386_64(AY728386|pid:none) Cyanothece sp. ATCC 51142, genomi... 39 0.91
EF584001_17(EF584001|pid:none) Uncultured haloarchaeon clone fos... 39 0.91
BT054160_1(BT054160|pid:none) Zea mays full-length cDNA clone ZM... 39 0.91
AB095187_1(AB095187|pid:none) Cyanidioschyzon merolae gene for D... 39 0.91
T20831(T20831) hypothetical protein F13D12.3 - Caenorhabditis el... 39 0.91
AM293550_1(AM293550|pid:none) Lactobacillus reuteri inu gene for... 39 0.91
AF459437_2(AF459437|pid:none) Lactobacillus reuteri inulosucrase... 39 0.91
AK102919_1(AK102919|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.91
AJ508391_1(AJ508391|pid:none) Lactobacillus sanfranciscensis ftf... 39 0.91
AF396669_1(AF396669|pid:none) Oryzias latipes choriogenin Hminor... 39 0.91
AM270071_74(AM270071|pid:none) Aspergillus niger contig An04c010... 38 1.2
CP000875_4637(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 38 1.2
CP000584_74(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ... 38 1.2
DQ223185_1(DQ223185|pid:none) Glaucocystis nostochinearum strain... 38 1.2
GM015893_268(GM015893|pid:none) Sequence 723 from Patent EP19234... 38 1.2
CP000033_958(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 38 1.2
AE016830_2187(AE016830|pid:none) Enterococcus faecalis V583, com... 38 1.2
(Q5KKY2) RecName: Full=mRNA cap guanine-N7 methyltransferase; ... 38 1.2
AC006931_16(AC006931|pid:none) Arabidopsis thaliana chromosome 2... 38 1.2
AB024740_1(AB024740|pid:none) Pyrococcus kodakaraensis Pk-chiA g... 38 1.2
FB785816_1(FB785816|pid:none) Sequence 5089 from Patent WO200803... 38 1.2
CR382129_531(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 38 1.5
AL592263_3(AL592263|pid:none) Pneumocystis carinii telomeric cos... 38 1.5
CR382132_1174(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 38 1.5
CP001276_516(CP001276|pid:none) Thermomicrobium roseum DSM 5159 ... 38 1.5
AK304760_1(AK304760|pid:none) Homo sapiens cDNA FLJ61577 complet... 38 1.5
EU760856_1(EU760856|pid:none) Plasmodium relictum clone 17.1 thr... 38 1.5
AF370509_1(AF370509|pid:none) Arabidopsis thaliana protein kinas... 38 1.5
AY536855_1(AY536855|pid:none) Arabidopsis thaliana putative prot... 38 1.5
AM920435_1175(AM920435|pid:none) Penicillium chrysogenum Wiscons... 38 1.5
CP001348_1096(CP001348|pid:none) Clostridium cellulolyticum H10,... 38 1.5
AY144928_1(AY144928|pid:none) Saccharomyces castellii clone Cont... 38 1.5
CR716159_6(CR716159|pid:none) P. carinii cosmid 22C8. 38 1.5
AJ133767_1(AJ133767|pid:none) Homo sapiens mRNA for ZASP protein... 38 1.5
CP000088_2731(CP000088|pid:none) Thermobifida fusca YX, complete... 37 2.0
CR954218_41(CR954218|pid:none) Ostreococcus tauri strain OTTH059... 37 2.0
(Q54FZ4) RecName: Full=Putative uncharacterized protein DDB_G029... 37 2.0
CR382124_663(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 37 2.0
BT064962_1(BT064962|pid:none) Zea mays full-length cDNA clone ZM... 37 2.0
CP001336_786(CP001336|pid:none) Desulfitobacterium hafniense DCB... 37 2.0
BX248347_197(BX248347|pid:none) Mycobacterium bovis subsp. bovis... 37 2.0
(Q9R0Z1) RecName: Full=LIM domain-binding protein 3; AltName: Fu... 37 2.0
AM494964_248(AM494964|pid:none) Leishmania braziliensis chromoso... 37 2.0
AK172980_1(AK172980|pid:none) Mus musculus mRNA for mKIAA0613 pr... 37 2.0
AP008230_783(AP008230|pid:none) Desulfitobacterium hafniense Y51... 37 2.0
CU633897_190(CU633897|pid:none) Podospora anserina genomic DNA c... 37 2.0
AF228058_1(AF228058|pid:none) Mus musculus oracle 2 protein mRNA... 37 2.0
A34092(A34092) DNA-directed RNA polymerase (EC 2.7.7.6) II large... 37 2.0
DQ446753_1(DQ446753|pid:none) Arabidopsis thaliana clone pENTR22... 37 2.6
AM910984_12(AM910984|pid:none) Plasmodium knowlesi strain H chro... 37 2.6
S14182(S14182)DNA-directed RNA polymerase (EC 2.7.7.6) largest c... 37 2.6
(Q32L53) RecName: Full=Glutamate [NMDA] receptor-associated prot... 37 2.6
S14181(S14181)DNA-directed RNA polymerase (EC 2.7.7.6) largest c... 37 2.6
BA000034_129(BA000034|pid:none) Streptococcus pyogenes SSI-1 DNA... 37 2.6
AP008984_36(AP008984|pid:none) Cyprinid herpesvirus 3 DNA, compl... 37 2.6
AL133363_17(AL133363|pid:none) Arabidopsis thaliana DNA chromoso... 37 2.6
AF519416_1(AF519416|pid:none) Strongylocentrotus purpuratus spic... 37 2.6
CR382126_220(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 37 2.6
U24217_1(U24217|pid:none) Kluyveromyces lactis RNA polymerase II... 37 2.6
X52493_1(X52493|pid:none) Soybean RPB1-B2 gene for the largest ... 37 2.6
CP001291_1045(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 37 2.6
AE016831_11(AE016831|pid:none) Enterococcus faecalis V583 plasmi... 37 2.6
FM992695_931(FM992695|pid:none) Candida dubliniensis CD36 chromo... 37 2.6
AE002565_37(AE002565|pid:none) Enterococcus faecalis plasmid pAM... 37 2.6
AP005647_14(AP005647|pid:none) Oryza sativa Japonica Group genom... 37 2.6
A41826(A41826) probable pheromone-responsive protein C precursor... 37 2.6
(Q6XKE6) RecName: Full=Genome polyprotein; Contains: RecName: ... 37 2.6
(Q6W4X9) RecName: Full=Mucin-6; Short=MUC-6; AltName: F... 37 2.6
(P50313) RecName: Full=Phosphoglycerate kinase; EC=2.7.... 31 2.7
BT083201_1(BT083201|pid:none) Anoplopoma fimbria clone afim-evh-... 37 3.4
(Q1E0A3) RecName: Full=Metacaspase-1; EC=3.4.22.-; Flag... 37 3.4
AL935260_75(AL935260|pid:none) Lactobacillus plantarum strain WC... 37 3.4
CR382129_619(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 37 3.4
CP000875_4834(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 37 3.4
AP000366_24(AP000366|pid:none) Oryza sativa Japonica Group genom... 37 3.4
AM946015_1687(AM946015|pid:none) Streptococcus uberis 0140J comp... 37 3.4
AY596294_53(AY596294|pid:none) Haloarcula marismortui ATCC 43049... 37 3.4
CP000686_3266(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 37 3.4
T07796(T07796) DNA-directed RNA polymerase (EC 2.7.7.6) largest ... 37 3.4
CP000909_3689(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 37 3.4
AL049608_13(AL049608|pid:none) Arabidopsis thaliana DNA chromoso... 37 3.4
AY327402_85(AY327402|pid:none) Choristoneura fumiferana defectiv... 37 3.4
(Q7S6J4) RecName: Full=Class E vacuolar protein-sorting machiner... 37 3.4
BT031005_1(BT031005|pid:none) Drosophila melanogaster LP17462 fu... 36 4.5
AC007865_6(AC007865|pid:none) Trypanosoma brucei chromosome 2 cl... 36 4.5
CR940347_1154(CR940347|pid:none) Theileria annulata strain Ankar... 36 4.5
Z78415_6(Z78415|pid:none) Caenorhabditis elegans Cosmid C17G1, c... 36 4.5
S20500(S20500) hydroxyproline-rich glycoprotein - rice &X61280_... 36 4.5
AE014298_1831(AE014298|pid:none) Drosophila melanogaster chromos... 36 4.5
AM270166_32(AM270166|pid:none) Aspergillus niger contig An08c011... 36 4.5
CP000804_2742(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 36 4.5
AL731610_10(AL731610|pid:none) Oryza sativa genomic DNA, chromos... 36 4.5
CP001341_690(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 36 4.5
CP001104_1588(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 36 4.5
AY913759_1(AY913759|pid:none) Oryzias javanicus choriogenin H mR... 36 4.5
BX569695_112(BX569695|pid:none) Synechococcus sp. WH8102 complet... 36 4.5
AJ890364_420(AJ890364|pid:none) Emiliania huxleyi virus 86 isola... 36 4.5
AC147006_30(AC147006|pid:none) Medicago truncatula clone mth2-62... 36 4.5
AY303232_1(AY303232|pid:none) Sphoeroides nephelus HoxD4b gene, ... 36 4.5
(A7GXH6) RecName: Full=Fructose-1,6-bisphosphatase class 1; ... 36 4.5
EU957544_1(EU957544|pid:none) Zea mays clone 1597034 receptor pr... 36 5.9
CP000023_210(CP000023|pid:none) Streptococcus thermophilus LMG 1... 36 5.9
AF364813_1(AF364813|pid:none) Toxoplasma gondii MIC2-associated ... 36 5.9
FB907466_1(FB907466|pid:none) Sequence 126739 from Patent WO2008... 36 5.9
BT031314_1(BT031314|pid:none) Drosophila melanogaster GH21533 fu... 36 5.9
CP001337_2627(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 36 5.9
AC140721_24(AC140721|pid:none) Medicago truncatula clone mth2-16... 36 5.9
BC159191_1(BC159191|pid:none) Danio rerio pygopus homolog 2 (Dro... 36 5.9
FB905735_1(FB905735|pid:none) Sequence 125008 from Patent WO2008... 36 5.9
AE014298_1592(AE014298|pid:none) Drosophila melanogaster chromos... 36 5.9
AP009493_2494(AP009493|pid:none) Streptomyces griseus subsp. gri... 36 5.9
AF294428_1(AF294428|pid:none) Murine herpesvirus 72 membrane vir... 36 5.9
CP000481_612(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 36 5.9
EU760866_1(EU760866|pid:none) Plasmodium relictum clone 9.123 th... 36 5.9
CP000249_1660(CP000249|pid:none) Frankia sp. CcI3, complete geno... 36 5.9
AE014296_2273(AE014296|pid:none) Drosophila melanogaster chromos... 36 5.9
CR936503_712(CR936503|pid:none) Lactobacillus sakei strain 23K c... 36 5.9
AF414112_1(AF414112|pid:none) Candida albicans putative cell wal... 36 5.9
AE017347_169(AE017347|pid:none) Cryptococcus neoformans var. neo... 36 5.9
AM270172_20(AM270172|pid:none) Aspergillus niger contig An08c017... 36 5.9
AC115599_31(AC115599|pid:none) Dictyostelium discoideum chromoso... 36 5.9
CP000393_2923(CP000393|pid:none) Trichodesmium erythraeum IMS101... 36 5.9
CP000593_126(CP000593|pid:none) Ostreococcus lucimarinus CCE9901... 36 5.9
S14183(S14183) DNA-directed RNA polymerase (EC 2.7.7.6) largest ... 36 5.9
(Q55DJ9) RecName: Full=Probable serine/threonine-protein kinase ... 36 5.9
CP001129_151(CP001129|pid:none) Streptococcus equi subsp. zooepi... 36 5.9
AM420293_104(AM420293|pid:none) Saccharopolyspora erythraea NRRL... 36 5.9
AE017347_241(AE017347|pid:none) Cryptococcus neoformans var. neo... 35 7.7
(O42956) Uncharacterized protein C19G7.08c. &AL021839_8(AL02183... 35 7.7
AE017352_240(AE017352|pid:none) Cryptococcus neoformans var. neo... 35 7.7
AP009552_6122(AP009552|pid:none) Microcystis aeruginosa NIES-843... 35 7.7
CP000480_1813(CP000480|pid:none) Mycobacterium smegmatis str. MC... 35 7.7
AC024817_16(AC024817|pid:none) Caenorhabditis elegans cosmid Y54... 35 7.7
BC108815_1(BC108815|pid:none) Xenopus laevis cDNA clone MGC:1321... 35 7.7
(Q6ZQ58) RecName: Full=La-related protein 1; AltName: Full=La ri... 35 7.7
AC009325_11(AC009325|pid:none) Arabidopsis thaliana chromosome I... 35 7.7
CP001275_1587(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 35 7.7
AK138840_1(AK138840|pid:none) Mus musculus 0 day neonate thymus ... 35 7.7
AF129497_1(AF129497|pid:none) Emericella nidulans class I alpha-... 35 7.7
(Q8R105) RecName: Full=Vacuolar protein sorting-associated prote... 35 7.7
AY672157_1(AY672157|pid:none) Streptococcus agalactiae strain U6... 35 7.7
CU638743_681(CU638743|pid:none) Podospora anserina genomic DNA c... 35 7.7
AP004011_17(AP004011|pid:none) Oryza sativa Japonica Group genom... 35 7.7
CP000423_2697(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 35 7.7
EU362919_28(EU362919|pid:none) Bacillus thuringiensis strain INT... 35 7.7
AF039376_1(AF039376|pid:none) Arabidopsis arenosa Evelknievel re... 35 7.7
AB181462_1(AB181462|pid:none) Gibberella fujikuroi genes for hyp... 35 7.7
CP000496_829(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 35 7.7
FB925482_1(FB925482|pid:none) Sequence 144755 from Patent WO2008... 35 7.7
FM177140_2975(FM177140|pid:none) Lactobacillus casei BL23 comple... 35 7.7
AE014298_1844(AE014298|pid:none) Drosophila melanogaster chromos... 35 7.7
Y12541_1(Y12541|pid:none) P.cynomolgi trap gene, partial. 35 7.7
>BC134446_1(BC134446|pid:none) Bos taurus suppressor of Ty 5 homolog
(S. cerevisiae), mRNA (cDNA clone MGC:140137
IMAGE:8164917), complete cds.
Length = 1083
Score = 119 bits (298), Expect(2) = 6e-51
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 1/206 (0%)
Frame = +3
Query: 30 KRKRTRPQARFFNPDEVEKMKIPLNQSTTLSGLFYILNGDKY-KDGFLHKVFRVASVNID 206
++K RP R F+ +++ L G F I G++Y + GFL K F +++V +
Sbjct: 325 RKKFKRPPQRLFDAEKIRS----LGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITE 380
Query: 207 GVVPSLEELQKFQDRGEVQMDEEGQPIENISAEISSVPILPRLQTKSTHFAKGDTVKVIQ 386
GV P+L EL+KF+D+ EG +E ++ + + +F GD V+V +
Sbjct: 381 GVKPTLSELEKFEDQ------PEGIDLEVVTESTG--------KEREHNFQPGDNVEVCE 426
Query: 387 GDLKNLMAIVESVEEDRVLILPIDEQIKDLFAFKPYELQKYFKVGDHVKAIGGRYEGETG 566
G+L NL + SV+ +++ I+P E +KD+ F EL+KYFK+GDHVK I GR+EG+TG
Sbjct: 427 GELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTG 486
Query: 567 MXXXXXXXXXXXXXXXTMSEIKVKPQ 644
+ TM E+KV P+
Sbjct: 487 LIVRVEENFVILFSDLTMHELKVLPR 512
Score = 107 bits (267), Expect(2) = 6e-51
Identities = 54/135 (40%), Positives = 87/135 (64%)
Frame = +1
Query: 628 LKLNLKHLQECTEVATGRLELGNYELHDLVQIGPHKVGVIIKVERDSFKVLDESSNVSTV 807
LK+ + LQ C+E A+G G +E +LVQ+ P VGVI+++ER++F+VL+ V TV
Sbjct: 507 LKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTV 566
Query: 808 KLQEVGNKRRNKSFTTLDAHHNTITSGDLIEVVDGAYKGKQGTILHISRNFLFIKSKDIF 987
+ Q V K+ N+ LD+ N I D+++V+DG + G++G I H+ R+F F+ K +
Sbjct: 567 RHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLV 626
Query: 988 ENGGVFVVRTQYCSL 1032
ENGG+FV +T++ L
Sbjct: 627 ENGGMFVCKTRHLVL 641
Score = 63.2 bits (152), Expect = 3e-08
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 30/221 (13%)
Frame = +1
Query: 1327 TPGT----NYSLYSPYTPNTPLDGSNRSDPNYTPYDRSTPS------------------- 1437
TPGT N +SPY +P GS + P+ Y + PS
Sbjct: 874 TPGTPAMYNTDQFSPYAAPSP-QGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSP 932
Query: 1438 MGYGNDPNPTPSYMSNYTPHEIPSSPYTPHNPQTPATPNSSEDHDEEVEPQYWSGTKIEV 1617
M Y P+P P S TP Y PH P + NSS+ W T I+V
Sbjct: 933 MAYQASPSPGPVGYSPMTPGAPSPGGYNPHTPGSGIEQNSSD----------WVTTDIQV 982
Query: 1618 VFKDS-------GKHAVVLDNLSDSTVRVEMLDTKEVIDNVSQSQLNLVPPAKKDRVVIV 1776
+D+ G+ V+ +++ V + D+++V+ ++S L + P K ++V ++
Sbjct: 983 KVRDTYLDTQVVGQTGVI-RSVTGGMCSVYLKDSEKVV-SISSEHLEPITPTKNNKVKVI 1040
Query: 1777 KGKLCGQSGNLFILTDENTGIVKMNSNFDFKVFKMSYIGKL 1899
G+ +G L + E+ GIV+M+ + K+ + ++GKL
Sbjct: 1041 LGEDREATGVLLSIDGED-GIVRMDLDEQLKILNLRFLGKL 1080
Score = 41.2 bits (95), Expect = 0.14
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 1351 YSPYTPNTPLDGSNRSDPNYTPYDRSTPS-MGYGNDPNP-TPSYMSNYTPHEIPSSPYTP 1524
+ P PNTP + Y D TPS YG PNP TP Y +P P
Sbjct: 817 WDPNNPNTPSRAEEEYE--YAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQ----- 869
Query: 1525 HNPQTPATP 1551
+NPQTP TP
Sbjct: 870 YNPQTPGTP 878
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,854,164,829
Number of extensions: 55505333
Number of successful extensions: 171335
Number of sequences better than 10.0: 256
Number of HSP's gapped: 165855
Number of HSP's successfully gapped: 439
Length of query: 659
Length of database: 1,040,966,779
Length adjustment: 135
Effective length of query: 524
Effective length of database: 608,388,304
Effective search space: 318795471296
Effective search space used: 318795471296
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
3 |
| SL (DIR, L) |
4 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
2 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |