Contig-U10738-1
Contig ID Contig-U10738-1
Contig update 2002.12.18
Contig sequence
>Contig-U10738-1 (Contig-U10738-1Q) /CSM_Contig/Contig-U10738-1Q.Seq.d
GAAACAACATATAATAAATTGATNACAATGACGAATACAAATGGCAAGAT
CTCCTAAGTGAGGGTATCGTTGAATATATCGATGCTGAAGAAGAAGAGAC
CGTTCTAATTGCAATGACTCCCGAAGATTTGGTGCCAATGCCAAACGAGC
AAATTGTGCATACCTATACACATTGTGAAATTCATCCATCGATGATTTTG
GGTATTTGTTGCTCTATCATTCCTTTCCCAGATCATAATCAATCACCACG
TAATACCTATCAAGCTGCTATGGGTAAACAAGCTATGGGTGTTTATATTA
CAAATTATCAACTTCGTATGGATACTATGGCCCATGTGTTATTCTATCCA
CAGAAACCATTGGTAACCACTCGTTCAATGGAGTATCTTCATTTCAGAGA
GTTACCTGCCGGTCAAAATGTATGTGTAGCCATCGCTTGTTACTCTGGTT
ACAATCAAGAGGATTCTGTAATTTTAAATCAATCGGCTATTGATCGTGGT
CTTTTTCCGTTCAATGTTTTATCGTGCATACAAGGATGAACAAAAGAAAC
AAACCTCACTCATGGAAGAAGTATTTGAAAAACCAGAACGTGATACTTGC
GCTGGTATGCGTCATGGGTTCCTATGAAA----------CGTTCAATGCG
TGTACCTCAAATCGGTGATAAGTTCTCTTCTCGTCATGGTCAAAAAGGTA
CTTGTGGTATGGCTTATCGTCAAGAGGATTTACCATTCACTGTTGAAGGT
ATCGTTCCAGATATCATTGTAAATCCACATGCTATTCCATCTCGTATGAC
CATTGGTCAATTGATTGAATGTCTTCTTGGTAAAGTATCTGCTTCAACTG
GTGATGAAGGTGATGCTACCCCATTCACTGATGTCACTGTAGAAGCTATT
TCACAAGCACTACACAAAATTGGTTATCAAATGACTGGTCATGAAGTTAT
GTATAATGGTCACACTGGTCGTCGTATGGATGCTCAAATCTTTATTGGTC
CAACTTATTATCAACGTTTAAAACATATGGTGGATGATAAAATTCACAGT
CGTTCAAGAGGTCCTGTTCAAATTTTAACCCGTCAACCTGTAGAAGGTCG
TTCTCGTGATGGTGGTTTACGTTTTGGTGAGATGGAAAGAGATTGTATGA
TTTCTCATGGTGCAGCTCAATTCTTAAAAGAACGTTTATTCGATCAATCA
GATAGTTATCGTGTTCATATTTGTGATATTTGTGGTCTCATTGCAATTGC
AAATCTAAAAAAGAATTCATTTGAATGTCGTAGATGTAAAAATAAAACTC
AAATTTCTCAAATTAGAATGCCATATGCTGCAAAACTTTTATTCCAAGAA
TTAATGTCAATGTCAATTGCTCCACGTATGTTTACTCAAACTTAATTTAA
AATTTTAAATTAATAAAAAAAATTAGAAAATTAAAAAAAAAGA

Gap gap included
Contig length 1433
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1292075
End point 1290639
Strand (PLUS/MINUS) MINUS
Number of clones 10
Number of EST 12
Link to clone list U10738
List of clone(s)

est1=AFB635F,1,404
est2=VSD745F,38,630
est3=AFI586Z,631,1383
est4=AHN418Z,645,1401
est5=AHM462Z,651,1413
est6=CHM223Z,654,1401
est7=SHK610Z,668,1447
est8=SHF407Z,669,1419
est9=AFB635Z,712,1398
est10=VSD745Z,715,1421
est11=AHA856Z,819,1418
est12=CHK802Z,912,1435
Translated Amino Acid sequence
kqhiin*xq*riqmarspk*gyr*iyrc*rrrdrsncndsrrfganakrancaylytl*n
ssiddfgylllyhsfprs*sitt*ylsscyg*tsygclyyklstsygyygpcvilsteti
gnhsfngvssfqrvtcrskcmcshrlllwlqsrgfcnfksigy*SWSFSVQCFIVHTRMN
KRNKPHSWKKYLKNQNVILALVCVMGSYE---

---RSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQ
LIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQI
FIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQ
FLKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQE
LMSMSIAPRMFTQT*fkiln**kklen*kkr


Translated Amino Acid sequence (All Frames)
Frame A:
ettynklxtmtntngkis*vrvslnismlkkkrpf*lq*lpkiwcqcqtsklcipihivk
fihr*fwvfvalsflsqiiinhhvipikllwvnklwvfilqiinfvwilwpmcysihrnh
w*plvqwsifisesylpvkmyv*pslvtlvtikril*f*inrllivvffrsmfyraykde
qkkqtslmeevfekperdtcagmrhgfl*---

---RSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQ
LIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQI
FIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQ
FLKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQE
LMSMSIAPRMFTQT*fkiln**kklen*kkr

Frame B:
kqhiin*xq*riqmarspk*gyr*iyrc*rrrdrsncndsrrfganakrancaylytl*n
ssiddfgylllyhsfprs*sitt*ylsscyg*tsygclyyklstsygyygpcvilsteti
gnhsfngvssfqrvtcrskcmcshrlllwlqsrgfcnfksigy*SWSFSVQCFIVHTRMN
KRNKPHSWKKYLKNQNVILALVCVMGSYE---

---vqcvylksvissllvmvkkvlvvwlivkriyhsllkvsfqisl*ihmlfhlv*plvn
*lnvflvkyllqlvmkvmlphslmsl*klfhkhytklvik*lvmklcimvtlvvvwmlks
llvqliinv*niwwmikftvvqevlfkf*pvnl*kvvlvmvvyvlvrwkeiv*flmvqln
s*knvysinqivivfifvifvvslqlqi*krihlnvvdvkiklkflklechmlqnfyskn
*cqcqllhvcllklnlkf*inkkn*kikkk

Frame C:
nni**idxndeykwqdllsegiveyidaeeeetvliamtpedlvpmpneqivhtythcei
hpsmilgiccsiipfpdhnqsprntyqaamgkqamgvyitnyqlrmdtmahvlfypqkpl
vttrsmeylhfrelpagqnvcvaiacysgynqedsvilnqsaidrglfpfnvlsciqg*t
ketnlthgrsi*ktrt*ylrwyaswvpmk---

---fnactsnr**vlfsswskrylwyglssrgftihc*ryrsryhckstcysisydhwsi
d*mssw*sicfnw**r*cypih*chcrsyftsttqnwlsndws*syv*wshwssygcsnl
ywsnllstfktygg**nsqsfkrscsnfnpstcrrsfs*wwftfw*dgkrlydfswcssi
lkrtfirsir*lscsyl*ylwshcnckskkefi*ms*m*k*nsnfsn*naiccktfipri
nvnvncstyvysnli*nfklikkirklkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10738-1 (Contig-U10738-1Q)
/CSM_Contig/Contig-U10738-1Q.Seq.d
(1443 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10738-1 (Contig-U10738-1Q) /CSM_Contig/Conti... 2684 0.0
Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Conti... 50 7e-06
Contig-U12284-1 (Contig-U12284-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U02603-1 (Contig-U02603-1Q) /CSM_Contig/Conti... 36 0.10
Contig-U14778-1 (Contig-U14778-1Q) /CSM_Contig/Conti... 34 0.40
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti... 34 0.40
Contig-U13488-1 (Contig-U13488-1Q) /CSM_Contig/Conti... 34 0.40
Contig-U13114-1 (Contig-U13114-1Q) /CSM_Contig/Conti... 34 0.40
Contig-U12490-1 (Contig-U12490-1Q) /CSM_Contig/Conti... 34 0.40
Contig-U11888-1 (Contig-U11888-1Q) /CSM_Contig/Conti... 34 0.40

>Contig-U10738-1 (Contig-U10738-1Q) /CSM_Contig/Contig-U10738-1Q.Seq.d
Length = 1443

Score = 2684 bits (1354), Expect = 0.0
Identities = 1387/1387 (100%)
Strand = Plus / Plus


Query: 1 gaaacaacatataataaattgatnacaatgacgaatacaaatggcaagatctcctaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaacaacatataataaattgatnacaatgacgaatacaaatggcaagatctcctaagtg 60


Query: 61 agggtatcgttgaatatatcgatgctgaagaagaagagaccgttctaattgcaatgactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agggtatcgttgaatatatcgatgctgaagaagaagagaccgttctaattgcaatgactc 120


Query: 121 ccgaagatttggtgccaatgccaaacgagcaaattgtgcatacctatacacattgtgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccgaagatttggtgccaatgccaaacgagcaaattgtgcatacctatacacattgtgaaa 180


Query: 181 ttcatccatcgatgattttgggtatttgttgctctatcattcctttcccagatcataatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcatccatcgatgattttgggtatttgttgctctatcattcctttcccagatcataatc 240


Query: 241 aatcaccacgtaatacctatcaagctgctatgggtaaacaagctatgggtgtttatatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcaccacgtaatacctatcaagctgctatgggtaaacaagctatgggtgtttatatta 300


Query: 301 caaattatcaacttcgtatggatactatggcccatgtgttattctatccacagaaaccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaattatcaacttcgtatggatactatggcccatgtgttattctatccacagaaaccat 360


Query: 361 tggtaaccactcgttcaatggagtatcttcatttcagagagttacctgccggtcaaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtaaccactcgttcaatggagtatcttcatttcagagagttacctgccggtcaaaatg 420


Query: 421 tatgtgtagccatcgcttgttactctggttacaatcaagaggattctgtaattttaaatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatgtgtagccatcgcttgttactctggttacaatcaagaggattctgtaattttaaatc 480


Query: 481 aatcggctattgatcgtggtctttttccgttcaatgttttatcgtgcatacaaggatgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatcggctattgatcgtggtctttttccgttcaatgttttatcgtgcatacaaggatgaa 540


Query: 541 caaaagaaacaaacctcactcatggaagaagtatttgaaaaaccagaacgtgatacttgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaaagaaacaaacctcactcatggaagaagtatttgaaaaaccagaacgtgatacttgc 600


Query: 601 gctggtatgcgtcatgggttcctatgaaannnnnnnnnncgttcaatgcgtgtacctcaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctggtatgcgtcatgggttcctatgaaannnnnnnnnncgttcaatgcgtgtacctcaa 660


Query: 661 atcggtgataagttctcttctcgtcatggtcaaaaaggtacttgtggtatggcttatcgt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atcggtgataagttctcttctcgtcatggtcaaaaaggtacttgtggtatggcttatcgt 720


Query: 721 caagaggatttaccattcactgttgaaggtatcgttccagatatcattgtaaatccacat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caagaggatttaccattcactgttgaaggtatcgttccagatatcattgtaaatccacat 780


Query: 781 gctattccatctcgtatgaccattggtcaattgattgaatgtcttcttggtaaagtatct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gctattccatctcgtatgaccattggtcaattgattgaatgtcttcttggtaaagtatct 840


Query: 841 gcttcaactggtgatgaaggtgatgctaccccattcactgatgtcactgtagaagctatt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gcttcaactggtgatgaaggtgatgctaccccattcactgatgtcactgtagaagctatt 900


Query: 901 tcacaagcactacacaaaattggttatcaaatgactggtcatgaagttatgtataatggt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tcacaagcactacacaaaattggttatcaaatgactggtcatgaagttatgtataatggt 960


Query: 961 cacactggtcgtcgtatggatgctcaaatctttattggtccaacttattatcaacgttta 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cacactggtcgtcgtatggatgctcaaatctttattggtccaacttattatcaacgttta 1020


Query: 1021 aaacatatggtggatgataaaattcacagtcgttcaagaggtcctgttcaaattttaacc 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aaacatatggtggatgataaaattcacagtcgttcaagaggtcctgttcaaattttaacc 1080


Query: 1081 cgtcaacctgtagaaggtcgttctcgtgatggtggtttacgttttggtgagatggaaaga 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cgtcaacctgtagaaggtcgttctcgtgatggtggtttacgttttggtgagatggaaaga 1140


Query: 1141 gattgtatgatttctcatggtgcagctcaattcttaaaagaacgtttattcgatcaatca 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gattgtatgatttctcatggtgcagctcaattcttaaaagaacgtttattcgatcaatca 1200


Query: 1201 gatagttatcgtgttcatatttgtgatatttgtggtctcattgcaattgcaaatctaaaa 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gatagttatcgtgttcatatttgtgatatttgtggtctcattgcaattgcaaatctaaaa 1260


Query: 1261 aagaattcatttgaatgtcgtagatgtaaaaataaaactcaaatttctcaaattagaatg 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aagaattcatttgaatgtcgtagatgtaaaaataaaactcaaatttctcaaattagaatg 1320


Query: 1321 ccatatgctgcaaaacttttattccaagaattaatgtcaatgtcaattgctccacgtatg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ccatatgctgcaaaacttttattccaagaattaatgtcaatgtcaattgctccacgtatg 1380


Query: 1381 tttactc 1387
|||||||
Sbjct: 1381 tttactc 1387


>Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Contig-U12453-1Q.Seq.d
Length = 1034

Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus


Query: 1110 tggtggtttacgttttggtgagatggaaagagattgt 1146
||||||| | ||||| |||||||||||||||||||||
Sbjct: 765 tggtggtcttcgtttaggtgagatggaaagagattgt 801


Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 787 ccatctcgtatgaccattggtcaattgattgaat 820
|||||||||||||| |||||| || |||||||||
Sbjct: 442 ccatctcgtatgactattggtaaaatgattgaat 475


Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1339 ttattccaagaatta 1353
|||||||||||||||
Sbjct: 976 ttattccaagaatta 990


>Contig-U12284-1 (Contig-U12284-1Q) /CSM_Contig/Contig-U12284-1Q.Seq.d
Length = 1370

Score = 40.1 bits (20), Expect = 0.007
Identities = 32/36 (88%)
Strand = Plus / Minus


Query: 772 aatccacatgctattccatctcgtatgaccattggt 807
|||||| ||||| | ||||| |||||||||||||||
Sbjct: 692 aatccaaatgctttcccatcacgtatgaccattggt 657


Score = 32.2 bits (16), Expect = 1.6
Identities = 25/28 (89%)
Strand = Plus / Minus


Query: 1110 tggtggtttacgttttggtgagatggaa 1137
||||||| | ||||| ||||||||||||
Sbjct: 342 tggtggtattcgtttcggtgagatggaa 315


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,017
Number of Sequences: 6905
Number of extensions: 13017
Number of successful extensions: 1087
Number of sequences better than 10.0: 100
length of query: 1443
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1427
effective length of database: 5,564,391
effective search space: 7940385957
effective search space used: 7940385957
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.21
Homology vs DNA
Query= Contig-U10738-1 (Contig-U10738-1Q) /CSM_Contig/Contig-U10738-1Q.Seq.d
(1443 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ355425) Dictyostelium discoideum cDNA clone:dda57d06, 3' ... 1455 0.0 1
(BJ355067) Dictyostelium discoideum cDNA clone:dda55l16, 3' ... 1443 0.0 1
(BJ344246) Dictyostelium discoideum cDNA clone:dda18k21, 3' ... 1443 0.0 2
(BJ382879) Dictyostelium discoideum cDNA clone:ddc46m06, 3' ... 1429 0.0 1
(BJ406109) Dictyostelium discoideum cDNA clone:dds34n02, 3' ... 1407 0.0 1
(AU264504) Dictyostelium discoideum vegetative cDNA clone:VS... 1316 0.0 1
(BJ340892) Dictyostelium discoideum cDNA clone:dda4e10, 3' e... 1227 0.0 2
(BJ408194) Dictyostelium discoideum cDNA clone:dds45c04, 3' ... 1183 0.0 2
(AU264503) Dictyostelium discoideum vegetative cDNA clone:VS... 1174 0.0 1
(BJ348273) Dictyostelium discoideum cDNA clone:dda32p14, 3' ... 1110 0.0 1
(BJ382142) Dictyostelium discoideum cDNA clone:ddc43d02, 3' ... 926 0.0 1
(BJ324003) Dictyostelium discoideum cDNA clone:dda4e10, 5' e... 787 0.0 1
(EF014411) Neocallimastix frontalis RNA polymerase II second... 133 e-101 9
(EF014412) Neocallimastix frontalis RNA polymerase II second... 103 1e-99 9
(DQ302779) Conidiobolus coronatus isolate AFTOL-ID 137 RNA p... 159 7e-93 8
(AY485615) Candida tropicalis DNA-dependent RNA polymerase I... 123 4e-92 10
(FE231293) CAPG10350.rev CAPG Naegleria gruberi amoeba stage... 147 1e-77 5
(DQ302791) Rozella allomycis isolate AFTOL-ID 297 RNA polyme... 165 1e-77 8
(FE231684) CAPG1349.rev CAPG Naegleria gruberi amoeba stage ... 143 3e-76 5
(FE234839) CAPG3036.rev CAPG Naegleria gruberi amoeba stage ... 131 6e-73 5
(FE236435) CAPG3888.rev CAPG Naegleria gruberi amoeba stage ... 131 8e-72 5
(DJ131793) Method for identification of useful proteins deri... 74 3e-71 10
(AX489154) Sequence 6454 from Patent WO02053728. 88 2e-68 10
(AF107787) Candida albicans DNA-dependent RNA polymerase II ... 96 2e-65 9
(DQ302794) Glomus intraradices isolate AFTOL-ID 845 RNA poly... 86 6e-65 9
(EF014398) Mucor hiemalis RNA polymerase II second largest s... 125 2e-59 6
(EE002194) ROE00010688 Rhizopus oryzae Company Rhizopus oryz... 147 6e-58 4
(CJ403428) Molgula tectiformis cDNA, gonad clone:mtgd007j06,... 101 4e-56 4
(CJ382347) Molgula tectiformis cDNA, gastrula/neurula clone:... 101 3e-55 4
(CJ379696) Molgula tectiformis cDNA, gastrula/neurula clone:... 101 7e-52 3
(CJ359365) Molgula tectiformis cDNA, cleaving embryo clone:m... 101 8e-52 3
(CJ379347) Molgula tectiformis cDNA, gastrula/neurula clone:... 96 4e-50 3
(DQ302787) Umbelopsis ramanniana isolate AFTOL-ID 144 RNA po... 84 8e-50 9
(AY485613) Pichia guilliermondii DNA-dependent RNA polymeras... 84 1e-49 8
(BC142267) Bos taurus polymerase (RNA) II (DNA directed) pol... 78 2e-49 6
(BU803755) SJFBDA02 SJF Schistosoma japonicum cDNA similar t... 143 4e-49 6
(CR382139) Debaryomyces hansenii chromosome G of strain CBS7... 105 3e-48 14
(DQ029108) Psilotum nudum RNA polymerase II second largest s... 70 2e-47 8
(DQ332682) Synthetic construct Saccharomyces cerevisiae clon... 60 4e-47 9
(EA397242) Sequence 46066 from patent US 7314974. 60 4e-47 9
(AY699213) Metasequoia glyptostroboides RNA polymerase II se... 119 4e-47 5
(D13337) Schizosaccharomyces pombe rpb2 gene for RNA polymer... 100 9e-47 9
(Z75059) S.cerevisiae chromosome XV reading frame ORF YOR151c. 60 4e-46 9
(CV671939) RE-3-SJ-L_H03_RE-3-SJ-LH03-T7 Schistosoma japonic... 147 3e-44 5
(BU776977) SJEDEG10 SJE Schistosoma japonicum cDNA similar t... 147 3e-44 5
(AY815953) Schistosoma japonicum SJCHGC09486 protein mRNA, p... 147 4e-44 5
(AY563266) Sequoia sempervirens RNA polymerase II second lar... 103 8e-44 6
(CJ356658) Molgula tectiformis cDNA, cleaving embryo clone:m... 96 9e-44 3
(M15693) Saccharomyces cerevisiae RNA polymerase II, 140 kd ... 60 2e-43 9
(AY699207) Taxus brevifolia RNA polymerase II second largest... 103 3e-43 6
(CV672573) RET7SJ_03C05.T7 Schistosoma japonicum reverse cDN... 147 5e-43 5
(AY699200) Agathis australis RNA polymerase II second larges... 96 1e-42 5
(CJ376484) Molgula tectiformis cDNA, gastrula/neurula clone:... 96 7e-42 3
(CJ387086) Molgula tectiformis cDNA, gastrula/neurula clone:... 96 2e-41 3
(U13875) Caenorhabditis elegans cosmid C26E6, complete seque... 94 3e-41 6
(FF310547) 279380368 Pea aphid whole body normalized full le... 72 1e-40 7
(EX616000) 255394251 Pea aphid whole body normalized full le... 72 2e-40 7
(FF299208) 279326348 Pea aphid whole body normalized full le... 72 2e-40 7
(FF312358) 279383346 Pea aphid whole body normalized full le... 72 2e-40 7
(AY699212) Sequoiadendron giganteum RNA polymerase II second... 103 4e-40 5
(U55020) Saccharomyces cerevisiae cosmid pEOA477 from chromo... 60 5e-40 9
(AY495590) Botryotinia fuckeliana RNA polymerase II gene, pa... 86 9e-40 8
(FD465405) LARWB51TR Haematobia irritans 1st Instar Larvae H... 68 5e-39 5
(DQ029107) Selaginella erythropus RNA polymerase II second l... 56 6e-39 9
(FF319775) 280405050 Pea aphid whole body normalized full le... 72 9e-39 6
(EX653693) 256822298 Pea aphid whole body normalized full le... 72 9e-39 6
(AY699178) Ophioglossum vulgatum RNA polymerase II second la... 72 1e-38 5
(FF324951) 280423962 Pea aphid whole body normalized full le... 72 1e-38 6
(DQ302781) Glomus mosseae isolate AFTOL-ID 139 RNA polymeras... 60 1e-38 9
(DQ302793) Rhizophydium macroporosum isolate AFTOL-ID 689 RN... 62 2e-38 10
(EX612022) 255378801 Pea aphid whole body normalized full le... 72 3e-38 7
(EX648014) 256719674 Pea aphid whole body normalized full le... 72 3e-38 7
(EX615705) 255392159 Pea aphid whole body normalized full le... 72 3e-38 7
(AY699201) Araucaria araucana RNA polymerase II second large... 88 3e-38 6
(EX638861) 256623770 Pea aphid whole body normalized full le... 72 4e-38 7
(CF449439) EST685784 normalized cDNA library of onion Allium... 88 5e-38 6
(DQ020641) Petunia x hybrida RNA polymerase II second larges... 84 7e-38 6
(AF043426) Peperomia caperata RNA polymerase II second large... 80 7e-38 7
(AY699209) Cephalotaxus fortunei RNA polymerase II second la... 105 2e-37 5
(EX637024) 256610212 Pea aphid whole body normalized full le... 76 1e-36 4
(AY780934) Coprinus comatus isolate AFTOL-ID 626 RNA polymer... 52 2e-36 9
(CR382122) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 72 2e-36 16
(DV127954) CV03049B1E07.f1 CV03-normalized library Euphorbia... 56 2e-36 5
(U28403) Lycopersicon esculentum RNA polymerase II subunit 2... 82 3e-36 4
(AY699195) Stangeria eriopus RNA polymerase II second larges... 94 1e-35 5
(DQ302792) Synchytrium macrosporum isolate AFTOL-ID 635 RNA ... 90 2e-35 5
(AF107788) Issatchenkia orientalis DNA-dependent RNA polymer... 70 3e-35 8
(AY699193) Macrozamia moorei RNA polymerase II second larges... 101 4e-35 5
(U10333) Caenorhabditis elegans RNA polymerase II second lar... 109 5e-35 4
(AY563267) Gnetum gnemon RNA polymerase II second largest su... 111 5e-35 4
(AY699182) Psilotum nudum RNA polymerase II second largest s... 70 6e-35 7
(EX641355) 256636301 Pea aphid whole body normalized full le... 72 9e-35 5
(AY485631) Pneumocystis carinii DNA-dependent RNA polymerase... 72 1e-34 7
(AY536285) Cortinarius iodes isolate AFTOL-ID 285 RNA polyme... 64 1e-34 9
(AY563265) Cycas revoluta RNA polymerase II second largest s... 101 1e-34 6
(AY699179) Equisetum hyemale RNA polymerase II second larges... 96 2e-34 5
(AY485612) Candida glabrata DNA-dependent RNA polymerase II ... 72 2e-34 7
(CF667663) RTCNT1_31_F07.g1_A029 Root control Pinus taeda cD... 82 2e-34 6
(AF020844) Marchantia polymorpha RPB140 (RPB2) mRNA, partial... 96 2e-34 5
(EX644035) 256654304 Pea aphid whole body normalized full le... 76 3e-34 4

>(BJ355425) Dictyostelium discoideum cDNA clone:dda57d06, 3' end,
single read.
Length = 757

Score = 1455 bits (734), Expect = 0.0
Identities = 734/734 (100%)
Strand = Plus / Minus


Query: 654 acctcaaatcggtgataagttctcttctcgtcatggtcaaaaaggtacttgtggtatggc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 acctcaaatcggtgataagttctcttctcgtcatggtcaaaaaggtacttgtggtatggc 698


Query: 714 ttatcgtcaagaggatttaccattcactgttgaaggtatcgttccagatatcattgtaaa 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttatcgtcaagaggatttaccattcactgttgaaggtatcgttccagatatcattgtaaa 638


Query: 774 tccacatgctattccatctcgtatgaccattggtcaattgattgaatgtcttcttggtaa 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tccacatgctattccatctcgtatgaccattggtcaattgattgaatgtcttcttggtaa 578


Query: 834 agtatctgcttcaactggtgatgaaggtgatgctaccccattcactgatgtcactgtaga 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agtatctgcttcaactggtgatgaaggtgatgctaccccattcactgatgtcactgtaga 518


Query: 894 agctatttcacaagcactacacaaaattggttatcaaatgactggtcatgaagttatgta 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agctatttcacaagcactacacaaaattggttatcaaatgactggtcatgaagttatgta 458


Query: 954 taatggtcacactggtcgtcgtatggatgctcaaatctttattggtccaacttattatca 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taatggtcacactggtcgtcgtatggatgctcaaatctttattggtccaacttattatca 398


Query: 1014 acgtttaaaacatatggtggatgataaaattcacagtcgttcaagaggtcctgttcaaat 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acgtttaaaacatatggtggatgataaaattcacagtcgttcaagaggtcctgttcaaat 338


Query: 1074 tttaacccgtcaacctgtagaaggtcgttctcgtgatggtggtttacgttttggtgagat 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttaacccgtcaacctgtagaaggtcgttctcgtgatggtggtttacgttttggtgagat 278


Query: 1134 ggaaagagattgtatgatttctcatggtgcagctcaattcttaaaagaacgtttattcga 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggaaagagattgtatgatttctcatggtgcagctcaattcttaaaagaacgtttattcga 218


Query: 1194 tcaatcagatagttatcgtgttcatatttgtgatatttgtggtctcattgcaattgcaaa 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tcaatcagatagttatcgtgttcatatttgtgatatttgtggtctcattgcaattgcaaa 158


Query: 1254 tctaaaaaagaattcatttgaatgtcgtagatgtaaaaataaaactcaaatttctcaaat 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tctaaaaaagaattcatttgaatgtcgtagatgtaaaaataaaactcaaatttctcaaat 98


Query: 1314 tagaatgccatatgctgcaaaacttttattccaagaattaatgtcaatgtcaattgctcc 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tagaatgccatatgctgcaaaacttttattccaagaattaatgtcaatgtcaattgctcc 38


Query: 1374 acgtatgtttactc 1387
||||||||||||||
Sbjct: 37 acgtatgtttactc 24

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,413,183,467
Number of extensions: 80860868
Number of successful extensions: 5857778
Number of sequences better than 10.0: 3590
Length of query: 1443
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1419
Effective length of database: 97,308,875,965
Effective search space: 138081294994335
Effective search space used: 138081294994335
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10738-1 (Contig-U10738-1Q) /CSM_Contig/Contig-U10738-1Q.Seq.d
(1443 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CR954201_170(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 432 0.0
(Q54J75) RecName: Full=DNA-directed RNA polymerase II subunit rp... 511 e-143
DQ058637_1(DQ058637|pid:none) Linanthus californicus RNA polymer... 434 e-120
DQ020641_1(DQ020641|pid:none) Petunia x hybrida RNA polymerase I... 434 e-120
DQ020642_1(DQ020642|pid:none) Antirrhinum majus RNA polymerase I... 434 e-120
AP008209_2128(AP008209|pid:none) Oryza sativa (japonica cultivar... 434 e-120
DQ058627_1(DQ058627|pid:none) Rhododendron macrophyllum RNA poly... 433 e-120
DQ020640_1(DQ020640|pid:none) Nicotiana sylvestris RNA polymeras... 433 e-120
Z19121_1(Z19121|pid:none) A.thaliana gene for RNA polymerase II ... 433 e-120
Z19120_1(Z19120|pid:none) A.thaliana mRNA for RNA polymerase II ... 433 e-120
BT068015_1(BT068015|pid:none) Zea mays full-length cDNA clone ZM... 430 e-119
DQ058628_1(DQ058628|pid:none) Rhododendron macrophyllum RNA poly... 425 e-117
DQ020638_1(DQ020638|pid:none) Petunia x hybrida RNA polymerase I... 422 e-116
DQ029103_1(DQ029103|pid:none) Spirogyra sp. UWCC FW670 RNA polym... 422 e-116
DQ020637_1(DQ020637|pid:none) Antirrhinum majus RNA polymerase I... 419 e-115
DQ020636_1(DQ020636|pid:none) Nicotiana sylvestris RNA polymeras... 417 e-115
DQ056143_29(DQ056143|pid:none) Coprinellus disseminatus strain C... 412 e-113
CP001324_413(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 409 e-112
CP000581_176(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 408 e-112
X05709_1(X05709|pid:none) Drosophila DmRP140 gene for RNA polyme... 405 e-111
AE017344_345(AE017344|pid:none) Cryptococcus neoformans var. neo... 403 e-111
BT059230_1(BT059230|pid:none) Salmo salar clone ssal-rgf-535-090... 400 e-110
FJ914623_1(FJ914623|pid:none) Epichloe festucae strain E2368 DNA... 400 e-110
D13337_1(D13337|pid:none) Schizosaccharomyces pombe rpb2 gene fo... 400 e-110
AL138854_1(AL138854|pid:none) S.pombe chromosome I cosmid c23G3.... 400 e-110
BX284752_32(BX284752|pid:none) Neurospora crassa DNA linkage gro... 399 e-109
BC038472_1(BC038472|pid:none) Mus musculus polymerase (RNA) II (... 399 e-109
(P30876) RecName: Full=DNA-directed RNA polymerase II subunit RP... 399 e-109
AK294901_1(AK294901|pid:none) Homo sapiens cDNA FLJ61678 complet... 399 e-109
BC142267_1(BC142267|pid:none) Bos taurus polymerase (RNA) II (DN... 399 e-109
AK299090_1(AK299090|pid:none) Homo sapiens cDNA FLJ59391 complet... 399 e-109
AF265351_1(AF265351|pid:none) Sus scrofa DNA-directed RNA polyme... 397 e-109
S70415(S70415) DNA-directed RNA polymerase (EC 2.7.7.6) II secon... 397 e-109
CU633454_208(CU633454|pid:none) Podospora anserina genomic DNA c... 397 e-109
(A5DHT2) RecName: Full=DNA-directed RNA polymerase II subunit RP... 395 e-108
DQ499800_1(DQ499800|pid:none) Phaeosphaeria avenaria f. sp. trit... 394 e-108
DQ499798_1(DQ499798|pid:none) Phaeosphaeria sp. S-93-48 RNA poly... 393 e-108
DQ499810_1(DQ499810|pid:none) Phaeosphaeria avenaria f. sp. aven... 393 e-108
DQ499813_1(DQ499813|pid:none) Phaeosphaeria avenaria f. sp. aven... 393 e-108
CU928171_114(CU928171|pid:none) Kluyveromyces thermotolerans str... 393 e-108
DQ278491_1(DQ278491|pid:none) Phaeosphaeria nodorum second large... 393 e-108
AF107797_1(AF107797|pid:none) Capronia mansonii DNA-dependent RN... 393 e-107
(Q753Q4) RecName: Full=DNA-directed RNA polymerase II subunit RP... 392 e-107
FN357318_14(FN357318|pid:none) Schistosoma mansoni genome sequen... 391 e-107
AF064612_1(AF064612|pid:none) Chironia linoides RNA polymerase I... 390 e-107
AM920436_1268(AM920436|pid:none) Penicillium chrysogenum Wiscons... 390 e-107
(Q6FLD5) RecName: Full=DNA-directed RNA polymerase II subunit RP... 388 e-106
(Q10578) RecName: Full=DNA-directed RNA polymerase II subunit RP... 387 e-106
CU928176_503(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 384 e-105
AJ565934_1(AJ565934|pid:none) Solanum lycopersicon partial rpb2 ... 384 e-105
AY485615_1(AY485615|pid:none) Candida tropicalis DNA-dependent R... 384 e-105
AJ133233_1(AJ133233|pid:none) Usteria guineensis rpb2-d gene, pa... 380 e-104
AJ565937_1(AJ565937|pid:none) Mimulus guttatus partial rpb2 gene... 379 e-103
AY485613_1(AY485613|pid:none) Pichia guilliermondii DNA-dependen... 379 e-103
AE001362_148(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 377 e-103
AM910986_43(AM910986|pid:none) Plasmodium knowlesi strain H chro... 376 e-102
AF064610_1(AF064610|pid:none) Mostuea brunonis RNA polymerase II... 375 e-102
CR940353_306(CR940353|pid:none) Theileria annulata strain Ankara... 374 e-102
AF107787_1(AF107787|pid:none) Candida albicans DNA-dependent RNA... 372 e-101
AJ133214_1(AJ133214|pid:none) Buddleja asiatica rpb2-d gene, par... 372 e-101
AJ133235_1(AJ133235|pid:none) Gardenia thunbergia rpb2-d gene, p... 370 e-101
AJ556176_1(AJ556176|pid:none) Vicia sativa partial rpb2 gene for... 370 e-101
AJ133231_1(AJ133231|pid:none) Strychnos potatorum rpb2-d gene, p... 369 e-100
AJ133239_1(AJ133239|pid:none) Pinckneya pubescens rpb2-d gene, p... 368 e-100
AF107793_1(AF107793|pid:none) Emericella nidulans DNA-dependent ... 367 e-100
AJ133240_1(AJ133240|pid:none) Rondeletia odorata rpb2-d gene, pa... 367 e-100
(Q8SR75) RecName: Full=DNA-directed RNA polymerase II subunit RP... 367 e-100
AJ556177_1(AJ556177|pid:none) Vicia sativa partial rpb2 gene for... 367 e-100
AJ133230_1(AJ133230|pid:none) Neuburgia corynocarpum rpb2-d gene... 366 e-99
AJ133226_1(AJ133226|pid:none) Gardneria angustifolia rpb2-d gene... 366 1e-99
AJ133217_1(AJ133217|pid:none) Peltanthera floribunda rpb2-d gene... 365 2e-99
AJ133227_1(AJ133227|pid:none) Logania vaginalis rpb2-d gene, par... 365 3e-99
AJ133237_1(AJ133237|pid:none) Oldenlandia corymbosa rpb2-d gene,... 365 3e-99
AJ133219_1(AJ133219|pid:none) Stephanotis floribunda rpb2-d gene... 364 4e-99
AJ133236_1(AJ133236|pid:none) Mussaenda erythrophylla rpb2-d gen... 364 5e-99
AJ133238_1(AJ133238|pid:none) Ophiorrhiza mungos rpb2-d gene, pa... 363 1e-98
AJ133216_1(AJ133216|pid:none) Sanango racemosum rpb2-d gene, par... 362 1e-98
AF064613_1(AF064613|pid:none) Kopsia fruticosa RNA polymerase II... 362 1e-98
AJ133225_1(AJ133225|pid:none) Antonia ovata rpb2-d gene, partial. 360 7e-98
AF064611_1(AF064611|pid:none) Periploca graeca RNA polymerase II... 360 7e-98
AJ133218_1(AJ133218|pid:none) Alstonia scholaris rpb2-d gene, pa... 359 1e-97
AJ133215_1(AJ133215|pid:none) Retzia capensis rpb2-d gene, parti... 358 2e-97
AF064614_1(AF064614|pid:none) Mostuea brunonis RNA polymerase II... 351 4e-95
AJ133221_1(AJ133221|pid:none) Gelsemium sempervirens rpb2-d gene... 348 4e-94
AF165818_28(AF165818|pid:none) Guillardia theta nucleomorph chro... 346 1e-93
DQ029108_1(DQ029108|pid:none) Psilotum nudum RNA polymerase II s... 342 3e-92
DQ358892_1(DQ358892|pid:none) Rubia tinctorum RNA polymerase II ... 334 5e-90
DQ358893_1(DQ358893|pid:none) Calycophyllum candidissimum RNA po... 333 9e-90
DQ358896_1(DQ358896|pid:none) Guettarda uruguensis RNA polymeras... 332 2e-89
DQ358895_1(DQ358895|pid:none) Ixora parviflora RNA polymerase II... 328 3e-88
AM502249_16(AM502249|pid:none) Leishmania infantum chromosome 31. 327 9e-88
CT005268_16(CT005268|pid:none) Leishmania major strain Friedlin,... 327 9e-88
DQ358889_1(DQ358889|pid:none) Alstonia scholaris RNA polymerase ... 325 2e-87
DQ358888_1(DQ358888|pid:none) Gentiana lutea RNA polymerase II (... 318 3e-85
DQ358891_1(DQ358891|pid:none) Bouvardia glaberrima RNA polymeras... 315 3e-84
EF222315_1(EF222315|pid:none) Beauveria bassiana strain ARSEF 15... 308 4e-82
AY815953_1(AY815953|pid:none) Schistosoma japonicum SJCHGC09486 ... 300 9e-80
AE009441_442(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 298 3e-79
AJ563602_1(AJ563602|pid:none) Garrya elliptica partial rpb2 gene... 296 1e-78
CP000504_697(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 296 2e-78
DQ029104_1(DQ029104|pid:none) Chara australis RNA polymerase II ... 295 3e-78
AY699186_1(AY699186|pid:none) Dicksonia antarctica RNA polymeras... 255 2e-77
CP001014_1920(CP001014|pid:none) Thermoproteus neutrophilus V24S... 292 2e-77
CP000780_1924(CP000780|pid:none) Candidatus Methanoregula boonei... 291 4e-77
AY699185_1(AY699185|pid:none) Cryptogramma crispa RNA polymerase... 255 1e-76
(Q7T6X7) RecName: Full=DNA-directed RNA polymerase subunit 2; ... 290 1e-76
AY699199_1(AY699199|pid:none) Welwitschia mirabilis RNA polymera... 256 2e-76
AY699179_1(AY699179|pid:none) Equisetum hyemale RNA polymerase I... 249 5e-76
CP001338_2062(CP001338|pid:none) Candidatus Methanosphaerula pal... 287 8e-76
BC060458_1(BC060458|pid:none) Xenopus laevis hypothetical protei... 251 9e-76
DQ017100_1(DQ017100|pid:none) Dicentra formosa RNA polymerase II... 256 9e-76
AY563267_1(AY563267|pid:none) Gnetum gnemon RNA polymerase II se... 254 9e-76
A71032(A71032) probable DNA-directed RNA polymerase subunit B - ... 286 1e-75
DQ017120_1(DQ017120|pid:none) Nelumbo nucifera RNA polymerase II... 256 1e-75
AY699183_1(AY699183|pid:none) Adiantum tenerum RNA polymerase II... 253 1e-75
CP000968_1509(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 286 1e-75
DQ017096_1(DQ017096|pid:none) Cissus tuberosa RNA polymerase II ... 255 2e-75
AY699220_1(AY699220|pid:none) Illicium anisatum RNA polymerase I... 255 2e-75
AY699204_1(AY699204|pid:none) Saxegothaea conspicua RNA polymera... 256 2e-75
DQ017133_1(DQ017133|pid:none) Vitis piasezkii RNA polymerase II ... 255 2e-75
DQ058630_1(DQ058630|pid:none) Eschscholzia californica RNA polym... 255 2e-75
AY563268_1(AY563268|pid:none) Dioscorea sansibarensis RNA polyme... 282 2e-75
AF043427_1(AF043427|pid:none) Nymphaea odorata RNA polymerase II... 255 2e-75
AF020844_1(AF020844|pid:none) Marchantia polymorpha RPB140 (RPB2... 248 2e-75
AY566630_1(AY566630|pid:none) Teucrium fruticans RNA polymerase ... 253 2e-75
AJ565859_1(AJ565859|pid:none) Valeriana officinalis partial rpb2... 285 2e-75
AY699219_1(AY699219|pid:none) Asarum caudatum RNA polymerase II ... 271 3e-75
AE009950_1564(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 285 3e-75
DQ017092_1(DQ017092|pid:none) Callistemon subulatus RNA polymera... 255 3e-75
DQ017087_1(DQ017087|pid:none) Aextoxicon punctatum RNA polymeras... 254 3e-75
AY563264_1(AY563264|pid:none) Selaginella densa RNA polymerase I... 249 3e-75
DQ058632_1(DQ058632|pid:none) Platanus orientalis RNA polymerase... 254 5e-75
DQ017101_1(DQ017101|pid:none) Dillenia suffruticosa RNA polymera... 254 5e-75
AY566618_1(AY566618|pid:none) Platanus orientalis RNA polymerase... 254 5e-75
AY699209_1(AY699209|pid:none) Cephalotaxus fortunei RNA polymera... 254 5e-75
AP006878_1084(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 284 5e-75
AY566614_1(AY566614|pid:none) Akebia longeracemosa RNA polymeras... 284 5e-75
AY699208_1(AY699208|pid:none) Cunninghamia lanceolata RNA polyme... 270 6e-75
AJ556782_1(AJ556782|pid:none) Tephrosia purpurea partial rpb2 ge... 254 6e-75
AY699178_1(AY699178|pid:none) Ophioglossum vulgatum RNA polymera... 253 6e-75
AY699190_1(AY699190|pid:none) Stenochlaena tenuifolia RNA polyme... 249 6e-75
AJ557002_1(AJ557002|pid:none) Davidia involucrata partial rpb2 g... 254 6e-75
DQ302791_1(DQ302791|pid:none) Rozella allomycis isolate AFTOL-ID... 284 6e-75
CP000682_33(CP000682|pid:none) Metallosphaera sedula DSM 5348, c... 284 6e-75
AY566619_1(AY566619|pid:none) Antirrhinum majus RNA polymerase I... 284 6e-75
DQ017113_1(DQ017113|pid:none) Hibbertia scandens RNA polymerase ... 253 8e-75
U10337_1(U10337|pid:none) Helobdella stagnalis RNA polymerase II... 257 8e-75
AJ555916_1(AJ555916|pid:none) Alangium platanifolium partial rpb... 254 8e-75
AY563266_1(AY563266|pid:none) Sequoia sempervirens RNA polymeras... 283 8e-75
DQ017132_1(DQ017132|pid:none) Tetracentron sinense RNA polymeras... 253 1e-74
DQ020634_1(DQ020634|pid:none) Berberidopsis beckleri RNA polymer... 253 1e-74
DQ020633_1(DQ020633|pid:none) Berberidopsis corallina RNA polyme... 253 1e-74
DQ302787_1(DQ302787|pid:none) Umbelopsis ramanniana isolate AFTO... 279 1e-74
DQ017099_1(DQ017099|pid:none) Dianthus caryophyllus RNA polymera... 253 1e-74
AY699221_1(AY699221|pid:none) Dianthus sp. UWG RNA polymerase II... 253 1e-74
AJ557133_1(AJ557133|pid:none) Borago officinalis partial rpb2 ge... 283 1e-74
DQ234555_1(DQ234555|pid:none) Rhodotorula hordea isolate AFTOL-I... 258 1e-74
AY699223_1(AY699223|pid:none) Musa velutina RNA polymerase II se... 268 1e-74
AY566626_1(AY566626|pid:none) Rhododendron macrophyllum RNA poly... 253 1e-74
AY699213_1(AY699213|pid:none) Metasequoia glyptostroboides RNA p... 253 2e-74
AJ558241_1(AJ558241|pid:none) Mimulus guttatus partial rpb2 gene... 250 2e-74
AY786065_1(AY786065|pid:none) Strobilomyces floccopus RNA polyme... 282 2e-74
AY566623_1(AY566623|pid:none) Liquidambar acalycina RPB140 (RPB2... 253 2e-74
AY566616_1(AY566616|pid:none) Eschscholzia californica RNA polym... 255 2e-74
FJ515667_1(FJ515667|pid:none) Sulfolobus shibatae B12 RNA polyme... 282 2e-74
AY699182_1(AY699182|pid:none) Psilotum nudum RNA polymerase II s... 264 3e-74
AY699196_1(AY699196|pid:none) Zamia integrifolia RNA polymerase ... 250 3e-74
AY699194_1(AY699194|pid:none) Microcycas calocoma RNA polymerase... 250 3e-74
AB433782_3(AB433782|pid:none) Haloarcula japonica rpoH, rpoB'', ... 281 3e-74
AJ557134_1(AJ557134|pid:none) Borago officinalis partial rpb2 ge... 281 4e-74
CP000855_219(CP000855|pid:none) Thermococcus onnurineus NA1, com... 281 4e-74
CP000493_1513(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 281 4e-74
AY699218_1(AY699218|pid:none) Drimys winteri RNA polymerase II s... 269 6e-74
AJ565858_1(AJ565858|pid:none) Escallonia sp. Oxelman 2340 partia... 251 6e-74
AE006641_201(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 280 7e-74
CP001403_1949(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 280 7e-74
DQ158857_96(DQ158857|pid:none) Bigelowiella natans nucleomorph c... 280 7e-74
AY566627_1(AY566627|pid:none) Camellia japonica RNA polymerase I... 252 8e-74
AJ556165_1(AJ556165|pid:none) Fagonia lahovarii partial rpb2 gen... 278 8e-74
AY699193_1(AY699193|pid:none) Macrozamia moorei RNA polymerase I... 248 1e-73
(O27124) RecName: Full=DNA-directed RNA polymerase subunit B'; ... 280 1e-73
DQ234553_1(DQ234553|pid:none) Hydnum albomagnum isolate AFTOL-ID... 254 1e-73
AY566624_1(AY566624|pid:none) Arceuthobium campylopodum RNA poly... 250 1e-73
AF043426_1(AF043426|pid:none) Peperomia caperata RNA polymerase ... 249 1e-73
AY699180_1(AY699180|pid:none) Isoetes sp. JZ73 RNA polymerase II... 245 1e-73
AY579382_1(AY579382|pid:none) Diapensia lapponica RNA polymerase... 249 1e-73
(Q60181) RecName: Full=DNA-directed RNA polymerase subunit B'; ... 279 2e-73
AF020839_1(AF020839|pid:none) Hordeum vulgare RPB140 (RPB2) mRNA... 248 2e-73
AY699206_1(AY699206|pid:none) Torreya californica RNA polymerase... 249 2e-73
AY699197_1(AY699197|pid:none) Dioon edule RNA polymerase II seco... 247 2e-73
AY699192_1(AY699192|pid:none) Encephalartos barteri RNA polymera... 247 2e-73
AY699201_1(AY699201|pid:none) Araucaria araucana RNA polymerase ... 251 2e-73
DQ302780_1(DQ302780|pid:none) Scutellospora heterogama isolate A... 278 3e-73
DQ302784_1(DQ302784|pid:none) Mortierella verticillata isolate A... 278 3e-73
CP001399_1861(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 278 3e-73
DQ366285_1(DQ366285|pid:none) Cantharellus cibarius isolate AFTO... 252 4e-73
AY699211_1(AY699211|pid:none) Thuja plicata RNA polymerase II se... 248 4e-73
CR936257_56(CR936257|pid:none) Natronomonas pharaonis DSM 2160 c... 278 5e-73
DQ912390_1(DQ912390|pid:none) Vulpicida pinastri isolate AFTOL-I... 258 5e-73
AJ557001_1(AJ557001|pid:none) Tephrosia purpurea partial rpb2 ge... 253 5e-73
(P15351) RecName: Full=DNA-directed RNA polymerase subunit B'; ... 277 6e-73
CP000562_298(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 277 8e-73
CP000559_1153(CP000559|pid:none) Methanocorpusculum labreanum Z,... 276 1e-72
CP000254_48(CP000254|pid:none) Methanospirillum hungatei JF-1, c... 276 1e-72
FN357450_60(FN357450|pid:none) Schistosoma mansoni genome sequen... 276 1e-72
CR954201_604(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 276 2e-72
DQ302769_1(DQ302769|pid:none) Batrachochytrium dendrobatidis iso... 276 2e-72
DQ472726_1(DQ472726|pid:none) Camarophyllopsis hymenocephala iso... 254 2e-72
AY485612_1(AY485612|pid:none) Candida glabrata DNA-dependent RNA... 253 3e-72
DQ973070_1(DQ973070|pid:none) Myelochroa aurulenta isolate AFTOL... 256 3e-72
AY699210_1(AY699210|pid:none) Juniperus communis RNA polymerase ... 246 3e-72
DQ302793_1(DQ302793|pid:none) Rhizophydium macroporosum isolate ... 275 3e-72
DQ020659_1(DQ020659|pid:none) Chlamydomonas reinhardtii RNA poly... 275 3e-72
AY485631_1(AY485631|pid:none) Pneumocystis carinii DNA-dependent... 251 4e-72
DQ992475_1(DQ992475|pid:none) Dactylina arctica RNA polymerase I... 255 5e-72
DQ408121_1(DQ408121|pid:none) Pycnoporus sp. ZW02.30 RNA polymer... 262 6e-72
AY786059_1(AY786059|pid:none) Hygrophoropsis aurantiaca RNA poly... 262 6e-72
AY218520_1(AY218520|pid:none) Stereum hirsutum isolate AFTOL-ID ... 252 6e-72
DQ302785_1(DQ302785|pid:none) Rhopalomyces elegans isolate AFTOL... 271 6e-72
DQ912387_1(DQ912387|pid:none) Parmotrema reticulatum isolate AFT... 255 6e-72
DQ912389_1(DQ912389|pid:none) Punctelia rudecta isolate AFTOL-ID... 255 6e-72
AY641062_1(AY641062|pid:none) Placynthium nigrum DNA-dependent R... 256 6e-72
DQ366279_1(DQ366279|pid:none) Aureoboletus thibetanus isolate AF... 252 6e-72
DQ381839_1(DQ381839|pid:none) Tulasnella pruinosa RNA polymerase... 250 6e-72
AY699191_1(AY699191|pid:none) Ceratozamia miqueliana RNA polymer... 242 6e-72
CP000505_286(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 273 9e-72
(P22276) RecName: Full=DNA-directed RNA polymerase III subunit R... 273 9e-72
M38723_2(M38723|pid:none) Saccharomyces cerevisiae tyrosine phos... 273 9e-72
DQ408120_1(DQ408120|pid:none) Polyporus squamosus isolate AFTOL-... 259 1e-71
AF107785_1(AF107785|pid:none) Agaricus bisporus DNA-dependent RN... 267 1e-71
AY786066_1(AY786066|pid:none) Suillus pictus RNA polymerase II s... 251 1e-71
AY786057_1(AY786057|pid:none) Grifola frondosa RNA polymerase II... 258 1e-71
DQ782875_1(DQ782875|pid:none) Hypocenomyce scalaris isolate AFTO... 254 1e-71
AY500472_1(AY500472|pid:none) Hydnotryopsis sp. Trappe 17231 DNA... 255 1e-71
AY780934_1(AY780934|pid:none) Coprinus comatus isolate AFTOL-ID ... 252 2e-71
AF020842_1(AF020842|pid:none) Aristolochia gigantea RPB140 (RPB2... 242 2e-71
DQ017604_1(DQ017604|pid:none) Desmazierella acicola voucher RK 9... 253 2e-71
DQ017603_1(DQ017603|pid:none) Desmazierella acicola voucher RK 9... 253 2e-71
DQ302775_1(DQ302775|pid:none) Dimargaris bacillispora isolate AF... 272 2e-71
AY485609_1(AY485609|pid:none) Amanita phalloides DNA-dependent R... 267 2e-71
DQ381841_1(DQ381841|pid:none) Tulasnella violea RNA polymerase I... 246 2e-71
DQ385887_1(DQ385887|pid:none) Megacollybia platyphylla isolate A... 254 2e-71
DQ011644_1(DQ011644|pid:none) Lunularia cruciata RNA polymerase ... 272 3e-71
DQ912392_1(DQ912392|pid:none) Phaeophyscia orbicularis isolate A... 254 3e-71
DQ912393_1(DQ912393|pid:none) Physconia muscigena isolate AFTOL-... 254 3e-71
DQ017607_1(DQ017607|pid:none) Chorioactis geaster voucher s.n. J... 250 3e-71
DQ017609_1(DQ017609|pid:none) Chorioactis geaster voucher s.n. U... 250 3e-71
CR382139_993(CR382139|pid:none) Debaryomyces hansenii strain CBS... 271 3e-71
AY780941_1(AY780941|pid:none) Climacodon septentrionalis isolate... 258 4e-71
AY641019_1(AY641019|pid:none) Acarospora bullata DNA-dependent R... 253 4e-71
DQ366282_1(DQ366282|pid:none) Coniophora arida isolate AFTOL-ID ... 249 4e-71
AY786056_1(AY786056|pid:none) Fomitopsis pinicola RNA polymerase... 258 4e-71
AY641077_1(AY641077|pid:none) Sporastatia testudinea DNA-depende... 253 4e-71
DQ883751_1(DQ883751|pid:none) Flavocetraria nivalis isolate AFTO... 252 4e-71
AY218495_1(AY218495|pid:none) Lycoperdon sp. DSH 96-054 isolate ... 251 5e-71
DQ883750_1(DQ883750|pid:none) Pseudocyphellaria anomala isolate ... 253 5e-71
AY780940_1(AY780940|pid:none) Clavaria zollingeri isolate AFTOL-... 251 5e-71
DQ385880_1(DQ385880|pid:none) Clavulinopsis laeticolor isolate A... 251 5e-71
DQ631901_1(DQ631901|pid:none) Bannoa sp. MP3490 RNA polymerase I... 245 5e-71
DQ385881_1(DQ385881|pid:none) Clitocybe candicans isolate AFTOL-... 251 5e-71
CU928168_404(CU928168|pid:none) Kluyveromyces thermotolerans str... 271 6e-71
AY485626_1(AY485626|pid:none) Mycosphaerella punctiformis DNA-de... 259 6e-71
DQ385886_1(DQ385886|pid:none) Macrolepiota dolichaula isolate AF... 250 6e-71
AY218477_1(AY218477|pid:none) Chondrostereum purpureum isolate A... 250 6e-71
AY641069_1(AY641069|pid:none) Rhizocarpon disporum DNA-dependent... 250 6e-71
DQ782867_1(DQ782867|pid:none) Mycoblastus sanguinarius isolate A... 253 6e-71
DQ470827_1(DQ470827|pid:none) Baeospora myosura isolate AFTOL-ID... 252 6e-71
DQ472713_1(DQ472713|pid:none) Fistulina antarctica isolate AFTOL... 248 6e-71
AY500488_1(AY500488|pid:none) Peziza sp. PM-120-97 DNA-dependent... 253 6e-71
DQ408116_1(DQ408116|pid:none) Ganoderma tsugae isolate AFTOL-ID ... 248 8e-71
AY333311_1(AY333311|pid:none) Crepidotus cf. applanatus PBM 717 ... 250 8e-71
DQ472730_1(DQ472730|pid:none) Kuehneromyces rostratus isolate AF... 253 8e-71
AY787221_1(AY787221|pid:none) Hyphoderma praetermissum isolate A... 248 8e-71
AY780937_1(AY780937|pid:none) Ampulloclitocybe clavipes isolate ... 251 8e-71
AY500498_1(AY500498|pid:none) Peziza varia voucher KH-97-107 (C)... 252 8e-71
DQ472729_1(DQ472729|pid:none) Inocybe mutata isolate AFTOL-ID 16... 248 8e-71
AY500475_1(AY500475|pid:none) Peziza badiofusca voucher KH-98-11... 254 8e-71
AY500496_1(AY500496|pid:none) Peziza echinispora voucher Jukka V... 252 8e-71
CR382126_43(CR382126|pid:none) Kluyveromyces lactis strain NRRL ... 270 1e-70
DQ302779_1(DQ302779|pid:none) Conidiobolus coronatus isolate AFT... 270 1e-70
DQ408123_1(DQ408123|pid:none) Spongipellis pachyodon isolate AFT... 269 1e-70
U10335_1(U10335|pid:none) Crassostrea gigas RNA polymerase II se... 245 1e-70
DQ525436_1(DQ525436|pid:none) Acarospora fulvoviridula voucher S... 252 1e-70
DQ525456_1(DQ525456|pid:none) Pleopsidium chlorophanum voucher Z... 252 1e-70
DQ525443_1(DQ525443|pid:none) Pleopsidium chlorophanum voucher R... 252 1e-70
DQ525457_1(DQ525457|pid:none) Pleopsidium gobiense voucher Kubra... 252 1e-70
DQ525447_1(DQ525447|pid:none) Pleopsidium gobiense voucher Reeb ... 252 1e-70
DQ525450_1(DQ525450|pid:none) Pleopsidium chlorophanum voucher R... 252 1e-70
DQ525438_1(DQ525438|pid:none) Pleopsidium chlorophanum voucher H... 252 1e-70
DQ525451_1(DQ525451|pid:none) Pleopsidium chlorophanum voucher R... 252 1e-70
AY786063_1(AY786063|pid:none) Pluteus romellii RNA polymerase II... 249 1e-70
AY885161_1(AY885161|pid:none) Fibulorhizoctonia sp. LA082103L is... 251 1e-70
AY218486_1(AY218486|pid:none) Gautieria otthii isolate AFTOL-ID ... 251 1e-70
DQ912396_1(DQ912396|pid:none) Degelia plumbea isolate AFTOL-ID 9... 252 1e-70
AY641087_1(AY641087|pid:none) Trichoglossum hirsutum DNA-depende... 251 1e-70
DQ973079_1(DQ973079|pid:none) Parmeliella appalachensis isolate ... 253 1e-70
DQ472720_1(DQ472720|pid:none) Hygrophorus auratocephalus isolate... 251 1e-70
BA000011_1208(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 269 2e-70
AF107802_1(AF107802|pid:none) Botryosphaeria rhodina DNA-depende... 259 2e-70
AY485627_1(AY485627|pid:none) Neofusicoccum mangiferae DNA-depen... 249 2e-70
DQ472719_1(DQ472719|pid:none) Hemimycena gracilis isolate AFTOL-... 249 2e-70
DQ408115_1(DQ408115|pid:none) Rickenella fibula isolate AFTOL-ID... 247 2e-70
AY500486_1(AY500486|pid:none) Peziza natrophila voucher JHP 93.0... 253 2e-70
AY500501_1(AY500501|pid:none) Peziza exogelatinosa voucher KH 00... 251 2e-70
AC118134_7(AC118134|pid:none) Oryza sativa chromosome 3 BAC OSJN... 269 2e-70
(Q03587) RecName: Full=DNA-directed RNA polymerase subunit B; ... 269 2e-70
DQ302774_1(DQ302774|pid:none) Cladochytrium replicatum isolate A... 269 2e-70
EF494071_1(EF494071|pid:none) Psilopezia deligata strain KH99.13... 251 2e-70
DQ302773_1(DQ302773|pid:none) Spizellomyces punctatus isolate AF... 268 2e-70
AY641021_1(AY641021|pid:none) Acarospora cervina DNA-dependent R... 251 2e-70
DQ525452_1(DQ525452|pid:none) Pleopsidium gobiense voucher Vost,... 251 2e-70
DQ973074_1(DQ973074|pid:none) Rhizocarpon superficiale isolate A... 248 2e-70
DQ525458_1(DQ525458|pid:none) Pleopsidium flavum voucher Scheide... 251 2e-70
DQ992473_1(DQ992473|pid:none) Pycnothelia papillaria RNA polymer... 249 2e-70
DQ472721_1(DQ472721|pid:none) Hydnopolyporus fimbriatus isolate ... 251 2e-70
DQ859892_1(DQ859892|pid:none) Sarcomyxa serotina isolate AFTOL-I... 251 2e-70
AF107786_1(AF107786|pid:none) Neolecta vitellina DNA-dependent R... 263 3e-70
EF494067_1(EF494067|pid:none) Phymatotrichopsis omnivora strain ... 250 3e-70
DQ883749_1(DQ883749|pid:none) Lobaria scrobiculata isolate AFTOL... 250 3e-70
DQ973090_1(DQ973090|pid:none) Asahinea scholanderi isolate AFTOL... 249 3e-70
DQ381843_1(DQ381843|pid:none) Punctularia strigosozonata RNA pol... 246 3e-70
DQ385885_1(DQ385885|pid:none) Lepista irina isolate AFTOL-ID 815... 253 3e-70
AY786062_1(AY786062|pid:none) Pleurotus ostreatus RNA polymerase... 246 3e-70
CP000477_28(CP000477|pid:none) Methanosaeta thermophila PT, comp... 268 4e-70
FN392322_236(FN392322|pid:none) Pichia pastoris GS115 chromosome... 268 4e-70
CR380958_114(CR380958|pid:none) Candida glabrata strain CBS138 c... 268 4e-70
DQ381844_1(DQ381844|pid:none) Vuilleminia comedens RNA polymeras... 248 4e-70
AY641020_1(AY641020|pid:none) Acarospora canadensis DNA-dependen... 250 4e-70
DQ525466_1(DQ525466|pid:none) Pleopsidium flavum voucher Reeb VR... 250 4e-70
AY333314_1(AY333314|pid:none) Phaeomarasmius proximans isolate A... 251 4e-70
DQ472732_1(DQ472732|pid:none) Lachnella villosa isolate AFTOL-ID... 246 4e-70
DQ302771_1(DQ302771|pid:none) Monoblepharella sp. M15 RNA polyme... 241 4e-70
DQ302778_1(DQ302778|pid:none) Entomophthora muscae isolate AFTOL... 268 5e-70
AY218513_1(AY218513|pid:none) Henningsomyces candidus strain Tho... 247 5e-70
DQ525464_1(DQ525464|pid:none) Pleopsidium flavum voucher Reeb VR... 249 5e-70
DQ302765_1(DQ302765|pid:none) Allomyces arbuscula isolate AFTOL-... 244 5e-70
AY500484_1(AY500484|pid:none) Peziza subisabellina voucher RK 96... 251 5e-70
S04716(S04716) DNA-directed RNA polymerase (EC 2.7.7.6) chain B ... 267 6e-70
AJ565936_1(AJ565936|pid:none) Solanum lycopersicon partial rpb2 ... 267 6e-70
DQ973071_1(DQ973071|pid:none) Pyxine sorediata isolate AFTOL-ID ... 249 7e-70
DQ912401_1(DQ912401|pid:none) Lopezaria versicolor isolate AFTOL... 248 7e-70
AY500465_1(AY500465|pid:none) Amylascus tasmanicus voucher Trapp... 251 7e-70
AC135796_19(AC135796|pid:none) Medicago truncatula clone mth2-28... 267 8e-70
AY641023_1(AY641023|pid:none) Acarospora hilaris DNA-dependent R... 249 9e-70
AY641059_1(AY641059|pid:none) Pertusaria amara DNA-dependent RNA... 247 9e-70
DQ973085_1(DQ973085|pid:none) Thelotrema lepadinum isolate AFTOL... 249 9e-70
DQ789985_1(DQ789985|pid:none) Microbotryum violaceum isolate AFT... 241 9e-70
DQ525453_1(DQ525453|pid:none) Pleopsidium flavum voucher Hertel ... 249 9e-70
AY500459_1(AY500459|pid:none) Ascobolus carbonarius voucher KH 0... 246 9e-70
AY500462_1(AY500462|pid:none) Ascobolus crenulatus voucher KH 02... 247 9e-70
AY485634_1(AY485634|pid:none) Thamnolia vermicularis DNA-depende... 247 1e-69
AY641041_1(AY641041|pid:none) Glypholecia scabra DNA-dependent R... 248 1e-69
AY641050_1(AY641050|pid:none) Lempholemma polyanthes DNA-depende... 249 1e-69
AY641064_1(AY641064|pid:none) Pleopsidium chlorophanum DNA-depen... 248 1e-69
DQ912385_1(DQ912385|pid:none) Hypotrachyna degelii isolate AFTOL... 247 1e-69
DQ782871_1(DQ782871|pid:none) Lecanora hybocarpa isolate AFTOL-I... 248 1e-69
AY803750_1(AY803750|pid:none) Tilletiaria anomala isolate AFTOL-... 244 1e-69
AY500467_1(AY500467|pid:none) Pachyella babingtonii voucher KH-9... 248 1e-69
AY495590_1(AY495590|pid:none) Botryotinia fuckeliana RNA polymer... 266 1e-69
AY548894_2(AY548894|pid:none) Antonospora locustae hypothetical ... 266 1e-69
AY218506_1(AY218506|pid:none) Polyporus arcularius isolate AFTOL... 244 2e-69
DQ782868_1(DQ782868|pid:none) Pertusaria dactylina isolate AFTOL... 247 2e-69
DQ973098_1(DQ973098|pid:none) Dirinaria applanata isolate AFTOL-... 249 2e-69
DQ470831_1(DQ470831|pid:none) Cheimonophyllum candidissimum isol... 249 2e-69
DQ525444_1(DQ525444|pid:none) Pleopsidium chlorophanum voucher R... 248 2e-69
AY641025_1(AY641025|pid:none) Acarospora macrospora subsp. macro... 248 2e-69
DQ525439_1(DQ525439|pid:none) Pleopsidium cf. chlorophanum Feuer... 248 2e-69
BC166377_1(BC166377|pid:none) Xenopus tropicalis hypothetical pr... 265 2e-69
AY092084_1(AY092084|pid:none) Homo sapiens RNA polymerase III su... 265 2e-69
AK122713_1(AK122713|pid:none) Homo sapiens cDNA FLJ16205 fis, cl... 265 2e-69
AY485610_1(AY485610|pid:none) Aspergillus fumigatus DNA-dependen... 261 3e-69
DQ408118_1(DQ408118|pid:none) Laetiporus sulphureus isolate AFTO... 264 3e-69
T43701(T43701) DNA-directed RNA polymerase (EC 2.7.7.6) II large... 239 3e-69
DQ663690_1(DQ663690|pid:none) Entyloma calendulae isolate AFTOL-... 242 3e-69
DQ645530_1(DQ645530|pid:none) Entyloma arnoseridis isolate AFTOL... 242 3e-69
DQ017593_1(DQ017593|pid:none) Donadinia sp. mh669 DNA-dependent ... 246 3e-69
DQ017592_1(DQ017592|pid:none) Plectania nannfeldtii voucher KH-9... 246 3e-69
DQ011646_1(DQ011646|pid:none) Psilotum nudum RNA polymerase IV s... 265 3e-69
AF107803_1(AF107803|pid:none) Curvularia brachyspora DNA-depende... 265 3e-69
AY485614_1(AY485614|pid:none) Candida parapsilosis DNA-dependent... 244 3e-69
BX537447_1(BX537447|pid:none) Homo sapiens mRNA; cDNA DKFZp686D1... 265 4e-69
DQ302786_1(DQ302786|pid:none) Rhizophlyctis rosea isolate AFTOL-... 265 4e-69
AY641024_1(AY641024|pid:none) Acarospora laqueata DNA-dependent ... 246 4e-69
DQ883755_1(DQ883755|pid:none) Diploschistes cinereocaesius isola... 247 4e-69
DQ247796_1(DQ247796|pid:none) Scutellinia scutellata isolate AFT... 243 4e-69
AE016817_126(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 264 5e-69
DQ782863_1(DQ782863|pid:none) Dermatocarpon miniatum isolate AFT... 246 6e-69
AY641027_1(AY641027|pid:none) Athelia bombacina DNA-dependent RN... 243 6e-69
BX950229_1362(BX950229|pid:none) Methanococcus maripaludis strai... 264 7e-69
CP000609_215(CP000609|pid:none) Methanococcus maripaludis C5, co... 264 7e-69
AY485618_1(AY485618|pid:none) Coccodinium bartschii DNA-dependen... 264 7e-69
AF107807_1(AF107807|pid:none) Leotia viscosa DNA-dependent RNA p... 260 8e-69
AF107794_1(AF107794|pid:none) Byssochlamys nivea DNA-dependent R... 246 8e-69
AY218480_1(AY218480|pid:none) Dacrymyces chrysospermus strain FP... 242 8e-69
AY584686_1(AY584686|pid:none) Ostropa barbara isolate AFTOL-ID 7... 246 8e-69
DQ381845_1(DQ381845|pid:none) Dacrymyces sp. FPL8953 RNA polymer... 242 8e-69
AK001161_1(AK001161|pid:none) Homo sapiens cDNA FLJ10299 fis, cl... 263 9e-69
CP000867_1298(CP000867|pid:none) Methanococcus maripaludis C6, c... 263 9e-69
DQ912391_1(DQ912391|pid:none) Buellia stillingiana isolate AFTOL... 251 1e-68
AY641053_1(AY641053|pid:none) Maronea chilensis DNA-dependent RN... 249 1e-68
DQ302792_1(DQ302792|pid:none) Synchytrium macrosporum isolate AF... 257 1e-68
DQ381838_1(DQ381838|pid:none) Sistotrema coronilla RNA polymeras... 245 1e-68
DQ247795_1(DQ247795|pid:none) Pyronema domesticum isolate AFTOL-... 244 1e-68
EF080826_1(EF080826|pid:none) Cheilymenia stercorea RNA polymera... 243 1e-68
EU360915_1(EU360915|pid:none) Pyronema omphalodes RNA polymerase... 244 1e-68
AJ809529_1(AJ809529|pid:none) Halococcus morrhuae partial rpoB g... 263 1e-68
AY641048_1(AY641048|pid:none) Lasallia pennsylvanica DNA-depende... 246 1e-68
DQ883762_1(DQ883762|pid:none) Ramalina complanata isolate AFTOL-... 243 1e-68
DQ973083_1(DQ973083|pid:none) Fissurina insidiosa isolate AFTOL-... 246 1e-68
DQ973072_1(DQ973072|pid:none) Ramalina complanata isolate AFTOL-... 243 1e-68
CP001576_191(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 263 2e-68
AJ890364_438(AJ890364|pid:none) Emiliania huxleyi virus 86 isola... 263 2e-68
AY485611_1(AY485611|pid:none) Baeomyces sp. SLJ472 DNA-dependent... 246 2e-68
DQ883758_1(DQ883758|pid:none) Pyxine subcinerea isolate AFTOL-ID... 244 2e-68
DQ247785_1(DQ247785|pid:none) Aleuria aurantia isolate AFTOL-ID ... 242 2e-68
FJ713613_1(FJ713613|pid:none) Mycosphaerella pneumatophorae isol... 241 3e-68
AY121645_1(AY121645|pid:none) Drosophila melanogaster LD14594 fu... 261 3e-68
AY218526_1(AY218526|pid:none) Coltricia perennis isolate AFTOL-I... 237 4e-68
AY641029_1(AY641029|pid:none) Acarospora clauzadeana DNA-depende... 243 4e-68
AY641052_1(AY641052|pid:none) Lobaria quercizans DNA-dependent R... 243 4e-68
DQ247789_1(DQ247789|pid:none) Coccomyces dentatus isolate AFTOL-... 247 4e-68
AF107805_1(AF107805|pid:none) Sporormiella minima DNA-dependent ... 261 4e-68
AY641044_1(AY641044|pid:none) Gyalecta ulmi DNA-dependent RNA po... 245 5e-68
AY641045_1(AY641045|pid:none) Gyromitra esculenta DNA-dependent ... 244 5e-68
DQ912395_1(DQ912395|pid:none) Coccocarpia domingensis isolate AF... 242 5e-68
DQ408131_1(DQ408131|pid:none) Piriformospora indica isolate AFTO... 239 5e-68
AY485625_1(AY485625|pid:none) Melanomma radicans DNA-dependent R... 261 6e-68
AF107801_1(AF107801|pid:none) Mycosphaerella citrullina DNA-depe... 261 6e-68
CR926474_1(CR926474|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 261 6e-68
AY485620_1(AY485620|pid:none) Filobasidiella neoformans DNA-depe... 244 6e-68
AF107800_1(AF107800|pid:none) Dothidea insculpta DNA-dependent R... 257 6e-68
AF107808_1(AF107808|pid:none) Sclerotinia sclerotiorum DNA-depen... 254 6e-68
AY641033_1(AY641033|pid:none) Cudonia circinans DNA-dependent RN... 246 6e-68
AY641032_1(AY641032|pid:none) Coenogonium leprieurii DNA-depende... 246 6e-68
DQ525463_1(DQ525463|pid:none) Pleopsidium discurrens voucher Obe... 243 6e-68
DQ017596_1(DQ017596|pid:none) Sarcoscypha occidentalis voucher D... 243 6e-68
AF510641_1(AF510641|pid:none) Giardia intestinalis RNA polymeras... 260 8e-68
CP000816_649(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 260 8e-68
AF107792_1(AF107792|pid:none) Microascus trigonosporus DNA-depen... 258 8e-68
AP007151_734(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 260 1e-67
AY485619_1(AY485619|pid:none) Cryphonectria parasitica DNA-depen... 260 1e-67
EF411068_1(EF411068|pid:none) Eupenicillium limosum isolate AFTO... 242 1e-67
AF107796_1(AF107796|pid:none) Exophiala jeanselmei DNA-dependent... 259 1e-67
AL355926_1(AL355926|pid:none) Neurospora crassa DNA linkage grou... 259 1e-67
AF107789_1(AF107789|pid:none) Neurospora crassa DNA-dependent RN... 245 1e-67
DQ883761_1(DQ883761|pid:none) Megalospora tuberculosa isolate AF... 244 1e-67
AY584682_1(AY584682|pid:none) Acarosporina microspora isolate AF... 241 1e-67
AY641078_1(AY641078|pid:none) Stereocaulon paschale DNA-dependen... 239 1e-67
AY485638_1(AY485638|pid:none) Aureobasidium pullulans DNA-depend... 259 2e-67
DQ247786_1(DQ247786|pid:none) Botryotinia fuckeliana isolate AFT... 243 2e-67
AF107798_1(AF107798|pid:none) Capronia pilosella DNA-dependent R... 259 2e-67
AY485628_1(AY485628|pid:none) Opegrapha varia DNA-dependent RNA ... 247 2e-67
DQ883757_1(DQ883757|pid:none) Anaptychia palmatula isolate AFTOL... 241 2e-67
AJ809523_1(AJ809523|pid:none) Natrinema pallidum partial rpoB ge... 258 3e-67
AB295635_1(AB295635|pid:none) Natronococcus occultus rpoB' gene ... 258 3e-67
AY485622_1(AY485622|pid:none) Dibaeis baeomyces DNA-dependent RN... 241 3e-67
AY641049_1(AY641049|pid:none) Lecanora concolor DNA-dependent RN... 239 3e-67
EF413606_1(EF413606|pid:none) Capronia munkii isolate AFTOL-ID 6... 241 3e-67
DQ525467_1(DQ525467|pid:none) Pleopsidium cf. chlorophanum Riefn... 240 4e-67
AJ809519_1(AJ809519|pid:none) Halosimplex carlsbadense partial r... 258 5e-67
AY780933_1(AY780933|pid:none) Agaricostilbum hyphaenes isolate A... 236 5e-67
U00050_9(U00050|pid:none) Caenorhabditis elegans cosmid F09F7, c... 257 6e-67
DQ302781_1(DQ302781|pid:none) Glomus mosseae isolate AFTOL-ID 13... 257 6e-67
AB295634_1(AB295634|pid:none) Natronococcus amylolyticus rpoB' g... 257 6e-67
DQ302782_1(DQ302782|pid:none) Smittium culisetae isolate AFTOL-I... 257 6e-67
T16011(T16011)hypothetical protein F09F7.3 - Caenorhabditis eleg... 257 6e-67
AY641070_1(AY641070|pid:none) Rhytisma acerinum DNA-dependent RN... 237 7e-67
DQ525445_1(DQ525445|pid:none) Pleopsidium chlorophanum voucher H... 239 7e-67
DQ472716_1(DQ472716|pid:none) Gymnopus contrarius isolate AFTOL-... 237 7e-67
AF339907_1(AF339907|pid:none) Leishmania major DNA-directed RNA ... 257 8e-67
CT005259_1(CT005259|pid:none) Leishmania major strain Friedlin, ... 257 8e-67
AY641055_1(AY641055|pid:none) Ochrolechia juvenalis DNA-dependen... 238 9e-67
AY641056_1(AY641056|pid:none) Peltigera canina DNA-dependent RNA... 239 9e-67
AE014188_66(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 256 1e-66
AJ809524_1(AJ809524|pid:none) Natronobacterium gregoryi partial ... 256 1e-66
AB295624_1(AB295624|pid:none) Natrinema versiforme rpoB' gene fo... 256 1e-66
DQ302766_1(DQ302766|pid:none) Coelomomyces stegomyiae isolate AF... 240 1e-66
AB295637_1(AB295637|pid:none) Natronolimnobius baerhuensis rpoB'... 256 1e-66
AB295632_1(AB295632|pid:none) Natrialba hulunbeirensis rpoB' gen... 256 1e-66
AF107790_1(AF107790|pid:none) Podospora anserina DNA-dependent R... 256 1e-66
AJ809511_1(AJ809511|pid:none) Halobiforma haloterrestris partial... 256 2e-66
AY641054_1(AY641054|pid:none) Morchella esculenta DNA-dependent ... 238 2e-66
DQ840564_1(DQ840564|pid:none) Ramichloridium anceps isolate AFTO... 238 2e-66
AJ809522_1(AJ809522|pid:none) Natrialba asiatica partial rpoB ge... 255 2e-66
AB295633_1(AB295633|pid:none) Natrialba magadii rpoB' gene for D... 255 2e-66
DQ525435_1(DQ525435|pid:none) Acarospora molybdina voucher Timda... 237 3e-66
CP000300_1077(CP000300|pid:none) Methanococcoides burtonii DSM 6... 255 3e-66
RNFF32(S16894) DNA-directed RNA polymerase (EC 2.7.7.6) III seco... 255 3e-66
AM494957_409(AM494957|pid:none) Leishmania braziliensis chromoso... 254 4e-66
AB295627_1(AB295627|pid:none) Natronorubrum bangense rpoB' gene ... 254 4e-66
DQ302768_1(DQ302768|pid:none) Rhizoclosmatium sp. JEL347-h RNA p... 233 4e-66
AY641043_1(AY641043|pid:none) Gyalecta jenensis DNA-dependent RN... 238 6e-66
AB295625_1(AB295625|pid:none) Halobiforma nitratireducens rpoB' ... 254 7e-66
AB295631_1(AB295631|pid:none) Natrialba chahannaoensis rpoB' gen... 253 9e-66
DQ000671_1(DQ000671|pid:none) Zea mays RNA polymerase IV second ... 253 9e-66
DQ302788_1(DQ302788|pid:none) Piptocephalis corymbifera isolate ... 239 1e-65
AE017349_40(AE017349|pid:none) Cryptococcus neoformans var. neof... 253 1e-65
AY584690_1(AY584690|pid:none) Trypethelium sp. DUKE 0000007 isol... 236 2e-65
AY303171_23(AY303171|pid:none) Solanum bulbocastanum chromosome ... 252 2e-65
AM910995_54(AM910995|pid:none) Plasmodium knowlesi strain H chro... 252 2e-65

>CR954201_170(CR954201|pid:none) Ostreococcus tauri strain OTTH0595,
*** SEQUENCING IN PROGRESS ***.
Length = 999

Score = 432 bits (1110), Expect(2) = 0.0
Identities = 220/348 (63%), Positives = 251/348 (72%), Gaps = 54/348 (15%)
Frame = +1

Query: 505 FRSMFYRAYKDEQKKQTSLMEEVFEKPERDTC---------------------------- 600
FRS++YR++KDE+KKQ SL E FE+P+RDTC
Sbjct: 654 FRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLSKRFS 713

Query: 601 -----AGMRHG------------------FL*XXXXRSMRVPQIGDKFSSRHGQKGTCGM 711
GM+H F+ RSMR PQ+GDKFSSRHGQKGT GM
Sbjct: 714 KKDCSTGMKHAETGIIDQVLLTTNDQGLRFV-KLRVRSMRTPQVGDKFSSRHGQKGTVGM 772

Query: 712 AYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTV 891
Y QED+PFT EGI PDIIVNPHAIPSRMTIGQL+EC++GKV+A G EGDATPFT VT
Sbjct: 773 TYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPFTPVTA 832

Query: 892 EAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQ 1071
E IS LHK GYQ G+EVMYNGHTGR +DAQIFIGPTYYQRLKHMVDDKIHSR RGPVQ
Sbjct: 833 EDISTMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQ 892

Query: 1072 ILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIA 1251
ILTRQP+EGRSRDGGLRFGEMERDC++SHGAA FLKERL DQSD+YR+H+C CGLIA+A
Sbjct: 893 ILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVA 952

Query: 1252 NLKKNSFECRRCKN---KTQISQIRMPYAAKLLFQELMSMSIAPRMFT 1386
NLK +FEC CKN +T + Q+ +PYA KLLFQELMSM+IAPR+ T
Sbjct: 953 NLKNQTFEC--CKNPSERTSVVQVMVPYACKLLFQELMSMAIAPRLIT 998

Score = 248 bits (634), Expect(2) = 0.0
Identities = 115/162 (70%), Positives = 134/162 (82%), Gaps = 5/162 (3%)
Frame = +3

Query: 36 YKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPMPNEQ-----IVHTYTHCEIHPSMIL 200
Y W +L++ G +EY+D EEEET +I+MT +DL + YTHCEIHPSMIL
Sbjct: 493 YSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGVAIRYTHCEIHPSMIL 552

Query: 201 GICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSM 380
GIC SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ+RMDT+ +VLFYPQKPLVTTR+M
Sbjct: 553 GICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLVTTRAM 612

Query: 381 EYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLF 506
EYLHFRELPAG N VAI CY+GYNQEDSV++NQSAIDRGLF
Sbjct: 613 EYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLF 654

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,372,172,252
Number of extensions: 50158391
Number of successful extensions: 136561
Number of sequences better than 10.0: 3771
Number of HSP's gapped: 134257
Number of HSP's successfully gapped: 6181
Length of query: 481
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 349
Effective length of database: 618,001,159
Effective search space: 215682404491
Effective search space used: 215682404491
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.90 gvh: 0.53 alm: 0.40 top: 0.93 tms: 0.00 mit: 0.37 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
32.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall

>> prediction for Contig-U10738-1 is mit

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0