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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10715-1
Contig ID Contig-U10715-1
Contig update 2002.12.18
Contig sequence 
>Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Contig-U10715-1Q.Seq.d
ACAAAAAGTATTCAAAAGTTTTTATTTTTATTTATTTACAAATAAATAAA
AATAAAATAAAAAAAAAAACAACAATGAATGGAAAAATAATAGCTTCTAT
TGTTTCCTTTATTATATTTTTGGCGTTGGGTGGTGGTACACTCTTTGTTT
CATTGAAATATTTAAAGCCAAGTATTGATTTAAGTAATGGTATTGAAACT
ACATCATGTAAAGTAATAAGTACAGAGGATCAAGCAACATGTAATAATCT
TAAATGTGTTGACCAAAACACTGATATTTGGTGGTACAATTCATGGGGTC
CATCATATTTCTTTGTTTATGTATCTGGGGGTACAGGTAATTCGGATTAC
TATGATGATGGTGGTGATGATGATGATGATGACGATGGTGGTGATGATGA
CGATGATGATGATGGTGGTGATTCAGGAGATGGTGATTCAGGCGGTGATT
CAGGTGGTGGTGACTCTGGTGGTGATTCAGGTGGCGGTGATATTGGTGGT
GGGTGATGAAATGAAAATGAGTAAGAGTAAAT----------AGATTAGA
AAGAAGATTAAAGGAGAACCAATTATCAAGAGCATTAAAAGCAGCAACTA
CCAATGCTGCACCAACATCAGGTAGTAGCTATTACGCCAGGCTCAGCATC
TGGTTGCAATACATGTTACCAAGGTGTTTTCAACGTTAACTATAATATCG
GTAATGGTAGTGAAGTAGAATCATCGATTCAAGGTTTAGTATCATCAGAT
TATAGTTGGGTATCAGATTATGTTGGTAATTATCAAAATGGTTCCTATTA
CACTTGTTACTATCAATCTGATGAACCAACAAATGTAGTATGGTTTAAAC
CTCCAAAATACAGTTCTGGTAGTTTGGCTGGTACTATCATTCTTTCAATT
TTATCCTTTATCGCATTAATTGTATCTGTTCTTTTCTTATTTGCTGGTTG
TAAACATCATAGTAGTAACAGCCATCACCACCACAACCATCATAACAATA
AGAAAAATCATACAAGTGGTGCTTATAAACCAATTGTTAATCCAACACCA
ATTAGTGCAAAGAAAGGAAATTATCAATCTTATCACAAGAATAATGGATC
TTATCATGGTGGTTACTCTACATCGGATTCTGCCCCACCACAAAATGTTC
CATATTATCAATATAATCAAGGTGTAGCTCAAATCGATTTTAGTGCAAAT
CAAAATGGTAGTATAAACTATGTTAATGCTCCACCAAGTTATAGTAGTTA
ATAATTTTTAAAACCTTATTCAAAAAAAAGAGATTGTATATTTTAAATAA
AATTTTTGAAAAAAA
Gap gap included
Contig length 1305
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3216981
End point 3218287
Strand (PLUS/MINUS) PLUS
Number of clones 12
Number of EST 19
Link to clone list U10715
List of clone(s) 

est1=AFA859F,1,456
est2=SFB542F,1,383
est3=SFK210F,1,533
est4=VFA622F,1,454
est5=VFD753F,2,427
est6=AFJ567F,10,445
est7=VFK710F,10,456
est8=AFH606F,44,457
est9=AFF709F,142,426
est10=VFH732Z,534,1289
est11=AFH606Z,535,1294
est12=CHB180Z,537,1292
est13=AFJ567Z,546,1233
est14=VFA622Z,550,1232
est15=SFB542Z,568,1270
est16=VFK710Z,570,1297
est17=AFF709Z,598,1271
est18=AFA859Z,679,1290
est19=SSL880E,1173,1306
Translated Amino Acid sequence 
tksiqkflflfiyk*ikik*kkkqq*mek**lllfpllyfwrwvvvhslfh*ni*sqvli
*vmvlklhhvk**VQRIKQHVIILNVLTKTLIFGGTIHGVHHISLFMYLGVQVIRITMMM
VVMMMMMTMVVMMTMMMMVVIQEMVIQAVIQVVVTLVVIQVAVILVVGDEMKMSKSK---

---RLERRLKENQLSRALKAATTNAAPTSGSSYYARLSIWLQYMLPRCFQR*l*yr*w**
sriidsrfsiirl*lgirlcw*lskwfllhlllsi**tnkcsmv*tskiqfw*fgwyyhs
fnfilyrincicsflicwl*ts***qpsppqps*q*eksykwcl*tnc*sntn*ckerkl
silsqe*wilswwllyigfcpttkcsilsi*srcssnrf*ckskw*yklc*cstkl**li
ifktlfkkkrlyilnkifek
Translated Amino Acid sequence (All Frames) 
Frame A:
tksiqkflflfiyk*ikik*kkkqq*mek**lllfpllyfwrwvvvhslfh*ni*sqvli
*vmvlklhhvk**VQRIKQHVIILNVLTKTLIFGGTIHGVHHISLFMYLGVQVIRITMMM
VVMMMMMTMVVMMTMMMMVVIQEMVIQAVIQVVVTLVVIQVAVILVVGDEMKMSKSK---

---RLERRLKENQLSRALKAATTNAAPTSGSSYYARLSIWLQYMLPRCFQR*l*yr*w**
sriidsrfsiirl*lgirlcw*lskwfllhlllsi**tnkcsmv*tskiqfw*fgwyyhs
fnfilyrincicsflicwl*ts***qpsppqps*q*eksykwcl*tnc*sntn*ckerkl
silsqe*wilswwllyigfcpttkcsilsi*srcssnrf*ckskw*yklc*cstkl**li
ifktlfkkkrlyilnkifek

Frame B:
qkvfksfyfylftnk*k*nkkknnnewknnsfycflyyifgvgwwytlcfieifkaky*f
k*wy*nyim*snkyrgssnm**s*mc*pkh*ylvvqfmgsiiflclciwgyr*fgll**w
w******rww***r***ww*frrw*frr*frww*lww*frwr*ywwwvmk*k*vrvn---

---d*ked*rrtnyqeh*kqqlpmlhqhqvvaitpgsasgcntcyqgvfnvnynigngse
vessiqglvssdyswvsdyvgnyqngsyytcyyqsdeptnvvwfkppkyssgslagtiil
silsfialivsvlflfagckhhssnshhhhnhhnnkknhtsgaykpivnptpisakkgny
qsyhknngsyhggystsdsappqnvpyyqynqgvaqidfsanqngsinyvnappsyss**
flkpyskkrdcif*ikflkk

Frame C:
kkyskvfifiylqinknkikkkttmngkiiasivsfiiflalgggtlfvslkylkpsidl
sngiettsckvistedqatcnnlkcvdqntdiwwynswgpsyffvyvsggtgnsdyyddg
gdddddddggdddddddggdsgdgdsggdsgggdsggdsgggdiggg**nene*e*---

---irkkikgepiiksikssnyqcctnir**llrqaqhlvaihvtkvfstltiisvmvvk
*nhrfkv*yhqiivgyqimlviikmvpitlvtinlmnqqm*yglnlqntvlvvwlvlsff
qfyplsh*lylffsyllvvniivvtaittttiitirkiiqvvlinqlliqhqlvqrkeii
nlitrimdlimvvtlhrilphhkmfhiiniikv*lksilvqikmvv*tmlmlhqvivvnn
f*nliqkkeivyfk*nf*kk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10715-1 (Contig-U10715-1Q)
/CSM_Contig/Contig-U10715-1Q.Seq.d
         (1315 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Conti...  1485  0.0
Contig-U04847-1 (Contig-U04847-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14699-1 (Contig-U14699-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12236-1 (Contig-U12236-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U08768-1 (Contig-U08768-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U04958-1 (Contig-U04958-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U02919-1 (Contig-U02919-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U01934-1 (Contig-U01934-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Conti...    34  0.37

>Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Contig-U10715-1Q.Seq.d
          Length = 1315

 Score = 1485 bits (749), Expect = 0.0
 Identities = 795/803 (99%)
 Strand = Plus / Plus

                                                                        
Query: 506  atgaaatgaaaatgagtaagagtaaatnnnnnnnnnnagattagaaagaagattaaagga 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506  atgaaatgaaaatgagtaagagtaaatnnnnnnnnnnagattagaaagaagattaaagga 565

                                                                        
Query: 566  gaaccaattatcaagagcattaaaagcagcaactaccaatgctgcaccaacatcaggtag 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  gaaccaattatcaagagcattaaaagcagcaactaccaatgctgcaccaacatcaggtag 625

                                                                        
Query: 626  tagctattacgccaggctcagcatctggttgcaatacatgttaccaaggtgttttcaacg 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  tagctattacgccaggctcagcatctggttgcaatacatgttaccaaggtgttttcaacg 685

                                                                        
Query: 686  ttaactataatatcggtaatggtagtgaagtagaatcatcgattcaaggtttagtatcat 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  ttaactataatatcggtaatggtagtgaagtagaatcatcgattcaaggtttagtatcat 745

                                                                        
Query: 746  cagattatagttgggtatcagattatgttggtaattatcaaaatggttcctattacactt 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746  cagattatagttgggtatcagattatgttggtaattatcaaaatggttcctattacactt 805

                                                                        
Query: 806  gttactatcaatctgatgaaccaacaaatgtagtatggtttaaacctccaaaatacagtt 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  gttactatcaatctgatgaaccaacaaatgtagtatggtttaaacctccaaaatacagtt 865

                                                                        
Query: 866  ctggtagtttggctggtactatcattctttcaattttatcctttatcgcattaattgtat 925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  ctggtagtttggctggtactatcattctttcaattttatcctttatcgcattaattgtat 925

                                                                        
Query: 926  ctgttcttttcttatttgctggttgtaaacatcatagtagtaacagccatcaccaccaca 985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  ctgttcttttcttatttgctggttgtaaacatcatagtagtaacagccatcaccaccaca 985

                                                                        
Query: 986  accatcataacaataagaaaaatcatacaagtggtgcttataaaccaattgttaatccaa 1045
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  accatcataacaataagaaaaatcatacaagtggtgcttataaaccaattgttaatccaa 1045

                                                                        
Query: 1046 caccaattagtgcaaagaaaggaaattatcaatcttatcacaagaataatggatcttatc 1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 caccaattagtgcaaagaaaggaaattatcaatcttatcacaagaataatggatcttatc 1105

                                                                        
Query: 1106 atggtggttactctacatcggattctgccccaccacaaaatgttccatattatcaatata 1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 atggtggttactctacatcggattctgccccaccacaaaatgttccatattatcaatata 1165

                                                                        
Query: 1166 atcaaggtgtagctcaaatcgattttagtgcaaatcaaaatggtagtataaactatgtta 1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 atcaaggtgtagctcaaatcgattttagtgcaaatcaaaatggtagtataaactatgtta 1225

                                                                        
Query: 1226 atgctccaccaagttatagtagttaataatttttaaaaccttattcnnnnnnnngagatt 1285
            ||||||||||||||||||||||||||||||||||||||||||||||        ||||||
Sbjct: 1226 atgctccaccaagttatagtagttaataatttttaaaaccttattcaaaaaaaagagatt 1285

                                   
Query: 1286 gtatattttaaataaaatttttg 1308
            |||||||||||||||||||||||
Sbjct: 1286 gtatattttaaataaaatttttg 1308


 Score =  559 bits (282), Expect = e-159
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 70  caacaatgaatggaaaaataatagcttctattgtttcctttattatatttttggcgttgg 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  caacaatgaatggaaaaataatagcttctattgtttcctttattatatttttggcgttgg 129

                                                                       
Query: 130 gtggtggtacactctttgtttcattgaaatatttaaagccaagtattgatttaagtaatg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gtggtggtacactctttgtttcattgaaatatttaaagccaagtattgatttaagtaatg 189

                                                                       
Query: 190 gtattgaaactacatcatgtaaagtaataagtacagaggatcaagcaacatgtaataatc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gtattgaaactacatcatgtaaagtaataagtacagaggatcaagcaacatgtaataatc 249

                                                                       
Query: 250 ttaaatgtgttgaccaaaacactgatatttggtggtacaattcatggggtccatcatatt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttaaatgtgttgaccaaaacactgatatttggtggtacaattcatggggtccatcatatt 309

                                                     
Query: 310 tctttgtttatgtatctgggggtacaggtaattcggattact 351
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tctttgtttatgtatctgggggtacaggtaattcggattact 351


 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 1  acaaaaagtattcaaaagtttttatttttatttatttac 39
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acaaaaagtattcaaaagtttttatttttatttatttac 39


 Score = 36.2 bits (18), Expect = 0.093
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 20 ttttatttttatttattt 37
          ||||||||||||||||||
Sbjct: 57 ttttatttttatttattt 40


>Contig-U04847-1 (Contig-U04847-1Q) /CSM_Contig/Contig-U04847-1Q.Seq.d
          Length = 806

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  tttttatttttatttatttac 39
           |||||||||||||||||||||
Sbjct: 718 tttttatttttatttatttac 698


 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 19  tttttatttttattt 33
           |||||||||||||||
Sbjct: 735 tttttatttttattt 721


>Contig-U14699-1 (Contig-U14699-1Q) /CSM_Contig/Contig-U14699-1Q.Seq.d
          Length = 761

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 19 tttttatttttatttattta 38
          ||||||||||||||||||||
Sbjct: 36 tttttatttttatttattta 17


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,125
Number of Sequences: 6905
Number of extensions: 24125
Number of successful extensions: 4133
Number of sequences better than 10.0: 886
length of query: 1315
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1299
effective length of database: 5,564,391
effective search space: 7228143909
effective search space used: 7228143909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.21
Homology vs DNA 
Query= Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Contig-U10715-1Q.Seq.d
         (1315 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ343453) Dictyostelium discoideum cDNA clone:dda16k02, 3' ...  1443   0.0    2
(BJ434297) Dictyostelium discoideum cDNA clone:ddv16p07, 3' ...  1439   0.0    1
(BJ433482) Dictyostelium discoideum cDNA clone:ddv22d03, 3' ...  1251   0.0    3
(BJ399124) Dictyostelium discoideum cDNA clone:dds4c11, 3' e...  1251   0.0    2
(BJ377528) Dictyostelium discoideum cDNA clone:ddc24o19, 3' ...  1251   0.0    3
(BJ340184) Dictyostelium discoideum cDNA clone:dda12b03, 3' ...  1239   0.0    2
(BJ344803) Dictyostelium discoideum cDNA clone:dda20e17, 3' ...  1193   0.0    2
(BJ429034) Dictyostelium discoideum cDNA clone:ddv2k06, 3' e...  1156   0.0    3
(BJ340534) Dictyostelium discoideum cDNA clone:dda2f16, 3' e...  1150   0.0    1
(BJ390053) Dictyostelium discoideum cDNA clone:dds21c04, 5' ...   553   e-159  2
(BJ410864) Dictyostelium discoideum cDNA clone:ddv2k06, 5' e...   547   e-151  1
(BJ415268) Dictyostelium discoideum cDNA clone:ddv22d03, 5' ...   529   e-146  1
(BJ327467) Dictyostelium discoideum cDNA clone:dda20e17, 5' ...   529   e-146  1
(BJ326340) Dictyostelium discoideum cDNA clone:dda16k02, 5' ...   529   e-146  1
(BJ412471) Dictyostelium discoideum cDNA clone:ddv8j13, 5' e...   511   e-140  1
(BJ325838) Dictyostelium discoideum cDNA clone:dda2f16, 5' e...   504   e-138  1
(BJ387695) Dictyostelium discoideum cDNA clone:dds4c11, 5' e...   492   e-134  1
(BJ323734) Dictyostelium discoideum cDNA clone:dda12b03, 5' ...   377   e-100  1
(C93934) Dictyostelium discoideum slug cDNA, clone SSL880.        176   7e-51  2
(AM470465) Vitis vinifera contig VV78X192863.43, whole genom...    38   0.51   2
(CR493359) mth2-167L3FM1 BAC end, cultivar Jemalong A17 of M...    48   0.85   1
(AJ902269) Trichoderma atroviride EST, clone L13T11P097R09159.     48   0.85   1
(AC156627) Medicago truncatula clone mth2-168e8, WORKING DRA...    42   1.1    5
(CU329670) Schizosaccharomyces pombe chromosome I.                 36   1.4    2
(AC181201) Strongylocentrotus purpuratus clone R3-11I16, WOR...    44   1.4    5
(CU407291) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.7    2
(CZ855978) OC__Ba0247C05.f OC__Ba Oryza coarctata genomic cl...    36   2.3    2
(BF299400) 067PbH10 Pb cDNA #20, Charles Yowell and Jane Car...    36   2.9    2
(CU914160) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   3.1    3
(BF299176) 063PbB06 Pb cDNA #20, Charles Yowell and Jane Car...    36   3.1    2
(AL732546) Mouse DNA sequence from clone RP23-264D16 on chro...    46   3.4    1
(AC115046) Mus musculus chromosome 5, clone RP24-321O4, comp...    46   3.4    1
(AC147056) Pan troglodytes BAC clone RP43-153F5 from chromos...    46   3.4    1
(FM177764) Tremarctos ornatus complete mitochondrial genome.       46   3.4    1
(FM177762) Arctodus simus complete mitochondrial genome.           46   3.4    1
(EF196665) Tremarctos ornatus mitochondrion, complete genome.      46   3.4    1
(AY228378) Pseudochirops archeri 12S ribosomal RNA gene, com...    46   3.4    1
(AC004930) Homo sapiens PAC clone RP5-921G16 from 7, complet...    46   3.4    1
(AC159358) Bos taurus clone CH240-21P21, WORKING DRAFT SEQUE...    46   3.4    1
(AC111398) Rattus norvegicus clone CH230-237J10, *** SEQUENC...    46   3.4    1
(AC105834) Rattus norvegicus clone CH230-46C16, *** SEQUENCI...    46   3.4    1
(AC103927) Mus musculus clone RP23-44A16, WORKING DRAFT SEQU...    46   3.4    1
(AC103082) Rattus norvegicus clone CH230-227E4, *** SEQUENCI...    46   3.4    1
(AC101726) Mus musculus clone RP23-321O24, WORKING DRAFT SEQ...    46   3.4    1
(AC224238) Bos taurus clone CH240-446E9, WORKING DRAFT SEQUE...    46   3.4    1
(EK583505) 1095522012800 Global-Ocean-Sampling_GS-32-01-01-1...    46   3.4    1
(EJ284171) 1095368008187 Global-Ocean-Sampling_GS-27-01-01-1...    46   3.4    1
(DE592251) Bombyx mori genomic DNA, Fosmid clone:GBMFno246_m...    46   3.4    1
(EE079763) S2B22370 Buds (VvS2) Vitis vinifera cDNA clone S2...    46   3.4    1
(EY354248) CAWZ2965.rev CAWZ Helobdella robusta Primary Late...    44   3.5    2
(EY334205) CAWY6207.rev CAWY Helobdella robusta Subtracted E...    44   3.6    2
(AC180775) Strongylocentrotus purpuratus clone R3-3074H07, W...    40   3.6    5
(AC013277) Homo sapiens BAC clone RP11-480N9 from 2, complet...    40   5.5    2
(AC204163) Xenopus (Silurana) tropicalis clone ISB1-56C22, W...    44   6.5    4
(AL645753) Mouse DNA sequence from clone CT7-315N12 on chrom...    36   6.5    5
(DQ336955) Glycine max cultivar Williams 82 clone BAC gmw1-5...    42   7.1    4
(AM442592) Vitis vinifera contig VV78X237640.4, whole genome...    34   7.5    2
(AC201256) Strongylocentrotus purpuratus clone R3-15O14, WOR...    38   7.6    4
(AM446630) Vitis vinifera contig VV78X204747.7, whole genome...    34   7.7    2
(AM442189) Vitis vinifera contig VV78X033870.2, whole genome...    34   8.0    2
(AG226157) Lotus japonicus DNA, clone:LjB13j01_r.                  34   8.5    2

>(BJ343453) Dictyostelium discoideum cDNA clone:dda16k02, 3' end,
            single read.
          Length = 760

 Score = 1443 bits (728), Expect(2) = 0.0
 Identities = 728/728 (100%)
 Strand = Plus / Minus


Query: 544  gattagaaagaagattaaaggagaaccaattatcaagagcattaaaagcagcaactacca 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  gattagaaagaagattaaaggagaaccaattatcaagagcattaaaagcagcaactacca 701


Query: 604  atgctgcaccaacatcaggtagtagctattacgccaggctcagcatctggttgcaataca 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  atgctgcaccaacatcaggtagtagctattacgccaggctcagcatctggttgcaataca 641


Query: 664  tgttaccaaggtgttttcaacgttaactataatatcggtaatggtagtgaagtagaatca 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  tgttaccaaggtgttttcaacgttaactataatatcggtaatggtagtgaagtagaatca 581


Query: 724  tcgattcaaggtttagtatcatcagattatagttgggtatcagattatgttggtaattat 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580  tcgattcaaggtttagtatcatcagattatagttgggtatcagattatgttggtaattat 521


Query: 784  caaaatggttcctattacacttgttactatcaatctgatgaaccaacaaatgtagtatgg 843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  caaaatggttcctattacacttgttactatcaatctgatgaaccaacaaatgtagtatgg 461


Query: 844  tttaaacctccaaaatacagttctggtagtttggctggtactatcattctttcaatttta 903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  tttaaacctccaaaatacagttctggtagtttggctggtactatcattctttcaatttta 401


Query: 904  tcctttatcgcattaattgtatctgttcttttcttatttgctggttgtaaacatcatagt 963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400  tcctttatcgcattaattgtatctgttcttttcttatttgctggttgtaaacatcatagt 341


Query: 964  agtaacagccatcaccaccacaaccatcataacaataagaaaaatcatacaagtggtgct 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340  agtaacagccatcaccaccacaaccatcataacaataagaaaaatcatacaagtggtgct 281


Query: 1024 tataaaccaattgttaatccaacaccaattagtgcaaagaaaggaaattatcaatcttat 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280  tataaaccaattgttaatccaacaccaattagtgcaaagaaaggaaattatcaatcttat 221


Query: 1084 cacaagaataatggatcttatcatggtggttactctacatcggattctgccccaccacaa 1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220  cacaagaataatggatcttatcatggtggttactctacatcggattctgccccaccacaa 161


Query: 1144 aatgttccatattatcaatataatcaaggtgtagctcaaatcgattttagtgcaaatcaa 1203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160  aatgttccatattatcaatataatcaaggtgtagctcaaatcgattttagtgcaaatcaa 101


Query: 1204 aatggtagtataaactatgttaatgctccaccaagttatagtagttaataatttttaaaa 1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100  aatggtagtataaactatgttaatgctccaccaagttatagtagttaataatttttaaaa 41


Query: 1264 ccttattc 1271
            ||||||||
Sbjct: 40   ccttattc 33

 Score = 48.1 bits (24), Expect(2) = 0.0
 Identities = 24/24 (100%)
 Strand = Plus / Minus


Query: 1280 gagattgtatattttaaataaaat 1303
            ||||||||||||||||||||||||
Sbjct: 24   gagattgtatattttaaataaaat 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,266,284,921
Number of extensions: 78019252
Number of successful extensions: 6553745
Number of sequences better than 10.0: 62
Length of query: 1315
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1291
Effective length of database: 97,308,875,965
Effective search space: 125625758870815
Effective search space used: 125625758870815
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Contig-U10715-1Q.Seq.d
         (1315 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992694_216(FM992694|pid:none) Candida dubliniensis CD36 chromo...    35   6.0

>FM992694_216(FM992694|pid:none) Candida dubliniensis CD36 chromosome
            7, complete sequence.
          Length = 138

 Score = 35.0 bits (79), Expect = 6.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 1075 QSYHKNNGSYHGGYSTSDSAPPQNVPYY---QYNQGVAQIDFSANQNGSIN 1218
            Q+Y+ NN  Y G Y+ ++  PPQ  P Y    Y +   Q  ++  Q+G+ N
Sbjct: 70   QTYYYNNNQYQGEYNGNNDLPPQATPGYIPPAYLETSQQQGYNPQQSGNYN 120

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,628,253,534
Number of extensions: 27451058
Number of successful extensions: 71364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71261
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 306
Effective length of database: 618,001,159
Effective search space: 189108354654
Effective search space used: 189108354654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.89  gvh: 0.55  alm: 0.13  top: 0.47  tms: 0.27  mit: 0.37  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U10715-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 4
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0