>Contig-U10617-1 (Contig-U10617-1Q) /CSM_Contig/Contig-U10617-1Q.Seq.d
CAAACATATCTAATAAGTCAAATGAAAATAGAATATTAAATAGAAATAAT
AATAATAATAATAATAGTCAAAATAATAATAATAATAATAATCAACAAAC
AGATTTAACAGGTGATTTTAATAAATTTAAAGAATTAATTACAAAGAGTA
GTTTTTCATTGATGACAGAAATTCAAAAGAAAAATAGTTCACATAGTAAG
AATTCGGAAAATAAAAGAAAAGAAATGGATTCATTAAAGAATGAAGTCCA
TAATTTGAAAAAGGATGTATTGGGTAAACATGATTATTTATGGAAGAAAT
CAGAGAGTGAAATGGATAAGAGATTCGCATTGTTAGATAAGAAACTGAAT
GAAGATATCATAAAGAGAATGAATAACTTTGAAAATCGTATTTTGGATGG
TTNCTCCTCATTGTTGGATAATGTTCAAGGTCAATTAGGTTCATTTAAAA
ATGATATTCAACAAGTAAAGAATGATGTACGTTCAATTGAATCGAATCAA
AACTTTAAATTGGATCAAATTATGTCTGAAATTAAAAATCTTAAAGGTTC
AATCGGTGCAATTACAACCNNNNNNNNN

est1=VFI759F,1,569

NISNKSNENRILNRNNNNNNNSQNNNNNNNQQTDLTGDFNKFKELITKSSFSLMTEIQKK
NSSHSKNSENKRKEMDSLKNEVHNLKKDVLGKHDYLWKKSESEMDKRFALLDKKLNEDII
KRMNNFENRILDGXSSLLDNVQGQLGSFKNDIQQVKNDVRSIESNQNFKLDQIMSEIKNL
KGSIGAITTXXX

Frame A:
qtylisqmkiey*ieiiiiiiivkiiiiiiinkqi*qvilinlkn*lqrvvfh**qkfkr
kivhivrirkikekkwih*rmksii*krmywvnmiiygrnqrvkwirdshc*irn*mkis
*re*itlkivfwmvxphcwimfkvn*vhlkmifnk*rmmyvqlnriktlnwiklclklki
lkvqsvqlqpxx


Frame B:
khi**vk*k*nik*k*******sk******stnrfnr*f**i*rinyke*ffiddrnske
k*ft**efgk*kkrngfike*sp*fekgcig*t*lfmeeire*ng*eirivr*ete*ryh
kene*l*ksyfgwxllivg*csrsirfi*k*ystske*ctfn*ieskl*igsnyv*n*ks
*rfnrcnynxxx


Frame C:
NISNKSNENRILNRNNNNNNNSQNNNNNNNQQTDLTGDFNKFKELITKSSFSLMTEIQKK
NSSHSKNSENKRKEMDSLKNEVHNLKKDVLGKHDYLWKKSESEMDKRFALLDKKLNEDII
KRMNNFENRILDGXSSLLDNVQGQLGSFKNDIQQVKNDVRSIESNQNFKLDQIMSEIKNL
KGSIGAITTXXX

Query= Contig-U10617-1 (Contig-U10617-1Q)
/CSM_Contig/Contig-U10617-1Q.Seq.d
         (578 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10617-1 (Contig-U10617-1Q) /CSM_Contig/Conti...   940  0.0
Contig-U12163-1 (Contig-U12163-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U04382-1 (Contig-U04382-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U01076-1 (Contig-U01076-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12579-1 (Contig-U12579-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U04670-1 (Contig-U04670-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U01495-1 (Contig-U01495-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U10617-1 (Contig-U10617-1Q) /CSM_Contig/Contig-U10617-1Q.Seq.d
          Length = 578

 Score =  940 bits (474), Expect = 0.0
 Identities = 477/477 (100%)
 Strand = Plus / Plus

                                                                       
Query: 93  caacaaacagatttaacaggtgattttaataaatttaaagaattaattacaaagagtagt 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  caacaaacagatttaacaggtgattttaataaatttaaagaattaattacaaagagtagt 152

                                                                       
Query: 153 ttttcattgatgacagaaattcaaaagaaaaatagttcacatagtaagaattcggaaaat 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ttttcattgatgacagaaattcaaaagaaaaatagttcacatagtaagaattcggaaaat 212

                                                                       
Query: 213 aaaagaaaagaaatggattcattaaagaatgaagtccataatttgaaaaaggatgtattg 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaaagaaaagaaatggattcattaaagaatgaagtccataatttgaaaaaggatgtattg 272

                                                                       
Query: 273 ggtaaacatgattatttatggaagaaatcagagagtgaaatggataagagattcgcattg 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggtaaacatgattatttatggaagaaatcagagagtgaaatggataagagattcgcattg 332

                                                                       
Query: 333 ttagataagaaactgaatgaagatatcataaagagaatgaataactttgaaaatcgtatt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttagataagaaactgaatgaagatatcataaagagaatgaataactttgaaaatcgtatt 392

                                                                       
Query: 393 ttggatggttnctcctcattgttggataatgttcaaggtcaattaggttcatttaaaaat 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttggatggttnctcctcattgttggataatgttcaaggtcaattaggttcatttaaaaat 452

                                                                       
Query: 453 gatattcaacaagtaaagaatgatgtacgttcaattgaatcgaatcaaaactttaaattg 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gatattcaacaagtaaagaatgatgtacgttcaattgaatcgaatcaaaactttaaattg 512

                                                                    
Query: 513 gatcaaattatgtctgaaattaaaaatcttaaaggttcaatcggtgcaattacaacc 569
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gatcaaattatgtctgaaattaaaaatcttaaaggttcaatcggtgcaattacaacc 569


>Contig-U12163-1 (Contig-U12163-1Q) /CSM_Contig/Contig-U12163-1Q.Seq.d
          Length = 1498

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  tttaataaatttaaagaatt 136
            ||||||||||||||||||||
Sbjct: 1371 tttaataaatttaaagaatt 1352


>Contig-U04382-1 (Contig-U04382-1Q) /CSM_Contig/Contig-U04382-1Q.Seq.d
          Length = 644

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 113 tgattttaataaatttaaa 131
           |||||||||||||||||||
Sbjct: 283 tgattttaataaatttaaa 301


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9724
Number of Sequences: 6905
Number of extensions: 9724
Number of successful extensions: 1210
Number of sequences better than 10.0: 399
length of query: 578
length of database: 5,674,871
effective HSP length: 16
effective length of query: 562
effective length of database: 5,564,391
effective search space: 3127187742
effective search space used: 3127187742
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U10617-1 (Contig-U10617-1Q) /CSM_Contig/Contig-U10617-1Q.Seq.d
         (578 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ414258) Dictyostelium discoideum cDNA clone:ddv18f15, 5' ...   674   0.0    2
(CU468813) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.0    5
(CR391943) Zebrafish DNA sequence from clone DKEY-15M21 in l...    46   1.4    1
(BX571679) Zebrafish DNA sequence from clone DKEYP-10C7 in l...    46   1.4    1
(EF173373) Aedes aegypti clone BAC ND41B18, complete sequence.     46   1.4    1
(AC103976) Homo sapiens chromosome 15, clone RP11-121E15, co...    46   1.4    1
(AC025219) Homo sapiens chromosome 15, clone RP11-276M12, co...    46   1.4    1
(AC157428) Bos taurus clone CH240-68M12, WORKING DRAFT SEQUE...    46   1.4    1
(AC149794) Aedes aegypti clone NDL.41B18, *** SEQUENCING IN ...    46   1.4    1
(AC103979) Homo sapiens chromosome 15 clone RP11-177F12 map ...    46   1.4    1
(CU695025) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.4    1
(CU468561) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.4    1
(CR936481) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.4    1
(CR628342) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.4    1
(BX546461) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.4    1
(AC131383) Strongylocentrotus purpuratus clone Sp41A8, *** S...    36   2.3    4
(FH645256) CHO_OF4982xi04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   2.6    2
(AC178361) Strongylocentrotus purpuratus clone R3-3105P12, W...    44   3.6    3
(BX470195) Mouse DNA sequence from clone RP23-4K22 on chromo...    44   5.5    1
(AC165230) Mus musculus chromosome 1, clone RP23-65C14, comp...    44   5.5    1
(AC151970) Mus musculus BAC clone RP24-255F16 from chromosom...    44   5.5    1
(AC078806) Homo sapiens 3 BAC RP11-59B20 (Roswell Park Cance...    44   5.5    1
(AC133246) Rattus norvegicus clone CH230-7G20, *** SEQUENCIN...    44   5.5    1
(AC130411) Homo sapiens chromosome 3 clone RP11-4M21, *** SE...    44   5.5    1
(AC102474) Mus musculus clone RP24-390G2, LOW-PASS SEQUENCE ...    44   5.5    1
(AC167753) Bos taurus clone CH240-215A11, WORKING DRAFT SEQU...    44   5.5    1
(AC012584) Homo sapiens clone RP11-4M21, WORKING DRAFT SEQUE...    44   5.5    1
(CZ982241) 193919 Tomato MboI BAC Library Solanum lycopersic...    44   5.5    1
(CL051371) CH216-73M13_Sp6.1 CH216 Xenopus (Silurana) tropic...    44   5.5    1
(CB446005) 697788 MARC 6BOV Bos taurus cDNA 5', mRNA sequence.     44   5.5    1
(BX496597) Homo sapiens mRNA; EST DKFZp779H2228_r1  (from cl...    34   7.6    2
(AA203678) zx52d05.r1 Soares_fetal_liver_spleen_1NFLS_S1 Hom...    34   9.8    2

>(BJ414258) Dictyostelium discoideum cDNA clone:ddv18f15, 5' end,
           single read.
          Length = 569

 Score =  674 bits (340), Expect(2) = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Plus


Query: 227 ggattcattaaagaatgaagtccataatttgaaaaaggatgtattgggtaaacatgatta 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ggattcattaaagaatgaagtccataatttgaaaaaggatgtattgggtaaacatgatta 286


Query: 287 tttatggaagaaatcagagagtgaaatggataagagattcgcattgttagataagaaact 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttatggaagaaatcagagagtgaaatggataagagattcgcattgttagataagaaact 346


Query: 347 gaatgaagatatcataaagagaatgaataactttgaaaatcgtattttggatggttnctc 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaatgaagatatcataaagagaatgaataactttgaaaatcgtattttggatggttnctc 406


Query: 407 ctcattgttggataatgttcaaggtcaattaggttcatttaaaaatgatattcaacaagt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctcattgttggataatgttcaaggtcaattaggttcatttaaaaatgatattcaacaagt 466


Query: 467 aaagaatgatgtacgttcaattgaatcgaatcaaaactttaaattggatcaaattatgtc 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaagaatgatgtacgttcaattgaatcgaatcaaaactttaaattggatcaaattatgtc 526


Query: 527 tgaaattaaaaatcttaaaggttcaatcggtgcaattacaacc 569
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgaaattaaaaatcttaaaggttcaatcggtgcaattacaacc 569

 Score = 52.0 bits (26), Expect(2) = 0.0
 Identities = 26/26 (100%)
 Strand = Plus / Plus


Query: 141 acaaagagtagtttttcattgatgac 166
           ||||||||||||||||||||||||||
Sbjct: 141 acaaagagtagtttttcattgatgac 166

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 466,376,091
Number of extensions: 28335978
Number of successful extensions: 2273168
Number of sequences better than 10.0: 33
Length of query: 578
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 555
Effective length of database: 93,106,754,628
Effective search space: 51674248818540
Effective search space used: 51674248818540
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U10617-1 (Contig-U10617-1Q) /CSM_Contig/Contig-U10617-1Q.Seq.d
         (578 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF143461_1(AF143461|pid:none) Borrelia hermsii strain HS1 BdrC3 ...    49   7e-05
AF143456_1(AF143456|pid:none) Borrelia parkeri BdrC1 (bdrC1) and...    47   3e-04
AF143472_1(AF143472|pid:none) Borrelia hermsii strain Man BdrC5 ...    47   4e-04
AF143460_1(AF143460|pid:none) Borrelia hermsii strain HS1 BdrC2 ...    47   4e-04
CP000990_24(CP000990|pid:none) Borrelia duttonii Ly plasmid pl70...    46   6e-04
AF143459_1(AF143459|pid:none) Borrelia hermsii strain HS1 BdrC1 ...    45   0.001
CP000274_5(CP000274|pid:none) Borrelia hermsii DAH plasmid fragm...    45   0.001
CP000275_2(CP000275|pid:none) Borrelia hermsii DAH plasmid fragm...    45   0.001
CP000278_12(CP000278|pid:none) Borrelia hermsii DAH plasmid frag...    45   0.002
AF062395_1(AF062395|pid:none) Borrelia turicatae 91E135 repeat m...    45   0.002
AF128447_1(AF128447|pid:none) Borrelia turicatae plasmid-encoded...    45   0.002
AF143465_1(AF143465|pid:none) Borrelia hermsii strain Man BdrA1 ...    45   0.002
AF143468_1(AF143468|pid:none) Borrelia hermsii strain Man BdrC1 ...    44   0.003
BA000026_156(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    43   0.005
AF128446_1(AF128446|pid:none) Borrelia turicatae plasmid-encoded...    43   0.007
AF143471_1(AF143471|pid:none) Borrelia hermsii strain Man BdrC4 ...    43   0.007
AF128445_1(AF128445|pid:none) Borrelia turicatae plasmid-encoded...    43   0.007
CP000679_2222(CP000679|pid:none) Caldicellulosiruptor saccharoly...    42   0.009
AF143458_1(AF143458|pid:none) Borrelia hermsii strain HS1 BdrA2 ...    42   0.009
AF143476_1(AF143476|pid:none) Borrelia hermsii strain Yor-1 BdrC...    42   0.012
BA000011_706(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,...    42   0.016
CP000576_228(CP000576|pid:none) Prochlorococcus marinus str. MIT...    41   0.027
AF143464_1(AF143464|pid:none) Borrelia hermsii strain Man BdrB2 ...    40   0.035
AF145356_1(AF145356|pid:none) Borrelia parkeri RepP4 (repP4), Re...    40   0.035
AF143466_1(AF143466|pid:none) Borrelia hermsii strain Man BdrB3 ...    40   0.035
CP000771_697(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1...    40   0.035
AF128451_1(AF128451|pid:none) Borrelia turicatae plasmid-encoded...    40   0.035
AP006627_558(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, co...    40   0.045
AF143474_1(AF143474|pid:none) Borrelia hermsii strain Yor-1 BdrA...    40   0.059
CP000025_577(CP000025|pid:none) Campylobacter jejuni RM1221, com...    40   0.059
CP000985_19(CP000985|pid:none) Borrelia duttonii Ly plasmid pl35...    39   0.077
CP000879_1660(CP000879|pid:none) Petrotoga mobilis SJ95, complet...    39   0.077
AF128452_1(AF128452|pid:none) Borrelia turicatae plasmid-encoded...    39   0.077
CP000764_3458(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    39   0.10
CR380951_138(CR380951|pid:none) Candida glabrata strain CBS138 c...    39   0.13
CP001248_35(CP001248|pid:none) Borrelia afzelii ACA-1 plasmid cp...    38   0.17
CR380956_310(CR380956|pid:none) Candida glabrata strain CBS138 c...    38   0.17
AE006641_2528(AE006641|pid:none) Sulfolobus solfataricus P2, com...    38   0.17
AP009552_3746(AP009552|pid:none) Microcystis aeruginosa NIES-843...    38   0.23
(Q10411) RecName: Full=Sporulation-specific protein 15;  &CU3296...    38   0.23
FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo...    38   0.23
CP000141_815(CP000141|pid:none) Carboxydothermus hydrogenoforman...    38   0.23
CP001376_20(CP001376|pid:none) Borrelia burgdorferi 72a plasmid ...    37   0.29
AF143462_1(AF143462|pid:none) Borrelia hermsii strain HS1 BdrC4 ...    37   0.29
CP000816_436(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    37   0.29
CP000997_3(CP000997|pid:none) Borrelia recurrentis A1 plasmid pl...    37   0.38
FN357481_8(FN357481|pid:none) Schistosoma mansoni genome sequenc...    37   0.38
AL844505_65(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.38
CR382398_65(CR382398|pid:none) Plasmodium falciparum chromosome ...    37   0.38
FM992691_625(FM992691|pid:none) Candida dubliniensis CD36 chromo...    37   0.38
FN357364_7(FN357364|pid:none) Schistosoma mansoni genome sequenc...    37   0.38
CP001100_2079(CP001100|pid:none) Chloroherpeton thalassium ATCC ...    37   0.50
AF046998_6(AF046998|pid:none) Borrelia burgdorferi plasmid cp32 ...    37   0.50
CP001549_38(CP001549|pid:none) Borrelia burgdorferi 29805 plasmi...    36   0.66
CP000767_1217(CP000767|pid:none) Campylobacter curvus 525.92, co...    36   0.66
T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme...    36   0.86
CR382121_234(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    36   0.86
(P80074) RecName: Full=Myb-related protein Pp1; Flags: Fragment;...    36   0.86
AL117325_1(AL117325|pid:none) Human DNA sequence from clone RP6-...    36   0.86
AF309774_1(AF309774|pid:none) Homo sapiens premature ovarian fai...    36   0.86
AE014187_59(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.1
AL844509_611(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.1
CU179680_131(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    35   1.1
CP000111_218(CP000111|pid:none) Prochlorococcus marinus str. MIT...    35   1.1
CP001435_32(CP001435|pid:none) Borrelia valaisiana VS116 plasmid...    35   1.1
CP000916_701(CP000916|pid:none) Thermotoga neapolitana DSM 4359,...    35   1.1
CP000962_1956(CP000962|pid:none) Clostridium botulinum A3 str. L...    35   1.1
CP000685_1000(CP000685|pid:none) Flavobacterium johnsoniae UW101...    35   1.5
CP001403_2648(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...    35   1.5
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso...    35   1.5
CP001401_2418(CP001401|pid:none) Sulfolobus islandicus M.16.27, ...    35   1.5
CP000984_14(CP000984|pid:none) Borrelia duttonii Ly plasmid pl28...    35   1.5
(Q3A218) RecName: Full=2',3'-cyclic-nucleotide 2'-phosphodiester...    35   1.5
AE014188_70(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.5
CP000382_1316(CP000382|pid:none) Clostridium novyi NT, complete ...    35   1.5
AJ416752_8(AJ416752|pid:none) Mycoplasma hominis uvrA gene (part...    35   1.9
CP000978_7(CP000978|pid:none) Borrelia duttonii Ly plasmid pl15,...    35   1.9
CP000764_3454(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    35   1.9
A90107(A90107) putative nucleolar G-protein [imported] - Guillar...    35   1.9
CP000771_1686(CP000771|pid:none) Fervidobacterium nodosum Rt17-B...    35   1.9
AE014298_2110(AE014298|pid:none) Drosophila melanogaster chromos...    35   1.9
CP001206_30(CP001206|pid:none) Borrelia burgdorferi ZS7 plasmid ...    35   1.9
DQ321780_1(DQ321780|pid:none) Trichomonas vaginalis strain NIH-C...    35   1.9
U45422_3(U45422|pid:none) Borrelia burgdorferi 2.9-2 locus, ORF-...    35   1.9
CP000996_13(CP000996|pid:none) Borrelia recurrentis A1 plasmid p...    35   1.9
CP000500_388(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    35   1.9
AE014298_2112(AE014298|pid:none) Drosophila melanogaster chromos...    35   1.9
(P39723) RecName: Full=Uncharacterized protein YAL047C;  &S51972...    34   2.5
AL844509_211(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.5
AE005176_1923(AE005176|pid:none) Lactococcus lactis subsp. lacti...    34   2.5
L41069_1(L41069|pid:none) Mus musculus testicular protein mRNA, ...    34   2.5
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    34   2.5
CP000976_495(CP000976|pid:none) Borrelia duttonii Ly, complete g...    34   2.5
CP000986_15(CP000986|pid:none) Borrelia duttonii Ly plasmid pl36...    34   2.5
AY723757_1(AY723757|pid:none) Saccharomyces cerevisiae clone FLH...    34   2.5
AM910996_174(AM910996|pid:none) Plasmodium knowlesi strain H chr...    34   2.5
AF145354_1(AF145354|pid:none) Borrelia hermsii RepH21 (repH21) a...    34   2.5
CP000867_1319(CP000867|pid:none) Methanococcus maripaludis C6, c...    34   2.5
CP000102_217(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    34   2.5
CP000879_436(CP000879|pid:none) Petrotoga mobilis SJ95, complete...    34   2.5
AF143463_1(AF143463|pid:none) Borrelia hermsii strain Man BdrB1 ...    34   3.3
AL831771_5(AL831771|pid:none) Mouse DNA sequence from clone RP23...    34   3.3
AF143469_1(AF143469|pid:none) Borrelia hermsii strain Man BdrC2 ...    34   3.3
CR940347_1131(CR940347|pid:none) Theileria annulata strain Ankar...    34   3.3
AK086511_1(AK086511|pid:none) Mus musculus 15 days embryo head c...    34   3.3
AF143470_1(AF143470|pid:none) Borrelia hermsii strain Man BdrC3 ...    34   3.3
AF123078_10(AF123078|pid:none) Borrelia hermsii plasmid cp32 put...    34   3.3
(Q8K4L4) RecName: Full=Protein POF1B;                                  34   3.3
CP000743_970(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    34   3.3
CP001217_550(CP001217|pid:none) Helicobacter pylori P12, complet...    34   3.3
AF303741_439(AF303741|pid:none) Chilo iridescent virus complete ...    34   3.3
AF309775_1(AF309775|pid:none) Mus musculus premature ovarian fai...    34   3.3
(O97237) RecName: Full=GRIP and coiled-coil domain-containing pr...    33   4.2
(Q5A4X0) RecName: Full=E3 ubiquitin-protein ligase BRE1;        ...    33   4.2
AL844508_175(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AM910992_27(AM910992|pid:none) Plasmodium knowlesi strain H chro...    33   4.2
AE015927_1098(AE015927|pid:none) Clostridium tetani E88, complet...    33   4.2
CR382133_548(CR382133|pid:none) Debaryomyces hansenii strain CBS...    33   4.2
CP000825_227(CP000825|pid:none) Prochlorococcus marinus str. MIT...    33   4.2
CP000726_3025(CP000726|pid:none) Clostridium botulinum A str. AT...    33   4.2
AY330639_20(AY330639|pid:none) Helicobacter pylori strain Ca73 c...    33   4.2
AE015450_285(AE015450|pid:none) Mycoplasma gallisepticum strain ...    33   4.2
(P47168) RecName: Full=TEL2-interacting protein 2;  &AY692606_1(...    33   4.2
(Q54VV5) RecName: Full=Anaphase-promoting complex subunit 5;    ...    33   4.2
FN357407_36(FN357407|pid:none) Schistosoma mansoni genome sequen...    33   4.2
AL844509_184(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AM285313_23(AM285313|pid:none) Spiroplasma citri GII3-3X chromos...    33   5.5
FJ407036_1(FJ407036|pid:none) Plasmodium falciparum isolate RO33...    33   5.5
FJ407045_1(FJ407045|pid:none) Plasmodium falciparum isolate D6 R...    33   5.5
DQ987498_1(DQ987498|pid:none) Gibberella zeae RING-12 protein mR...    33   5.5
AF143457_1(AF143457|pid:none) Borrelia hermsii strain HS1 BdrA1 ...    33   5.5
CP001287_2575(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    33   5.5
(Q4I7N9) RecName: Full=E3 ubiquitin-protein ligase BRE1;        ...    33   5.5
AE014187_169(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.5
AF127375_3(AF127375|pid:none) Entamoeba histolytica RabB (rabB),...    33   5.5
CP000716_1541(CP000716|pid:none) Thermosipho melanesiensis BI429...    33   5.5
FJ407037_1(FJ407037|pid:none) Plasmodium falciparum isolate Palo...    33   5.5
AB073701_27(AB073701|pid:none) Borrelia duttonii plasmid DNA, co...    33   5.5
(Q148H7) RecName: Full=Keratin, type II cytoskeletal 79; AltName...    33   5.5
CP000993_312(CP000993|pid:none) Borrelia recurrentis A1, complet...    33   5.5
CP000246_885(CP000246|pid:none) Clostridium perfringens ATCC 131...    33   5.5
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    33   5.5
CP001047_207(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    33   5.5
CR940352_371(CR940352|pid:none) Theileria annulata strain Ankara...    33   5.5
CP000487_698(CP000487|pid:none) Campylobacter fetus subsp. fetus...    33   5.5
FJ407034_1(FJ407034|pid:none) Plasmodium falciparum isolate T9/9...    33   5.5
AM180355_238(AM180355|pid:none) Clostridium difficile 630 comple...    33   7.2
CP000978_1(CP000978|pid:none) Borrelia duttonii Ly plasmid pl15,...    33   7.2
BC014152_1(BC014152|pid:none) Homo sapiens keratin 6A, mRNA (cDN...    33   7.2
AM910991_283(AM910991|pid:none) Plasmodium knowlesi strain H chr...    33   7.2
BC024292_1(BC024292|pid:none) Homo sapiens keratin 5, mRNA (cDNA...    33   7.2
AE000783_552(AE000783|pid:none) Borrelia burgdorferi B31, comple...    33   7.2
AY501889_1(AY501889|pid:none) Plasmodium vivax strain Thailand-N...    33   7.2
AM398681_1563(AM398681|pid:none) Flavobacterium psychrophilum JI...    33   7.2
CP000254_2974(CP000254|pid:none) Methanospirillum hungatei JF-1,...    33   7.2
CP001205_525(CP001205|pid:none) Borrelia burgdorferi ZS7, comple...    33   7.2
AE000783_511(AE000783|pid:none) Borrelia burgdorferi B31, comple...    33   7.2
CP000395_517(CP000395|pid:none) Borrelia afzelii PKo, complete g...    33   7.2
CP000867_1396(CP000867|pid:none) Methanococcus maripaludis C6, c...    33   7.2
(Q00798) RecName: Full=Reticulocyte-binding protein 1; Flags: Pr...    33   7.2
U42599_4(U42599|pid:none) Borrelia burgdorferi plasmid cp18, Osp...    33   7.2
AF288037_4(AF288037|pid:none) Streptococcus thermophilus putativ...    33   7.2
AK025080_1(AK025080|pid:none) Homo sapiens cDNA: FLJ21427 fis, c...    33   7.2
S28061(S28061) SCP1 protein - rat  &X67805_1(X67805|pid:none)          33   7.2
AK301686_1(AK301686|pid:none) Homo sapiens cDNA FLJ51361 complet...    33   7.2
AY892345_1(AY892345|pid:none) Synthetic construct Homo sapiens c...    33   7.2
DQ973815_1(DQ973815|pid:none) Plasmodium fragile normocyte-bindi...    33   7.2
AE001579_34(AE001579|pid:none) Borrelia burgdorferi B31 plasmid ...    33   7.2
(P22044) RecName: Full=Phosphoprotein;          Short=Protein P;...    33   7.2
AE017194_2938(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    33   7.2
V01516_1(V01516|pid:none) Human messenger fragment encoding cyto...    33   7.2
A29904(A29904;A60865;A32568;A27679;I58080) keratin 5, type II, e...    33   7.2
AE001578_34(AE001578|pid:none) Borrelia burgdorferi B31 plasmid ...    33   7.2
BC124861_1(BC124861|pid:none) Xenopus laevis hypothetical protei...    33   7.2
A42771(A42771)reticulocyte-binding protein 1 - Plasmodium vivax        33   7.2
(P13647) RecName: Full=Keratin, type II cytoskeletal 5; AltName:...    33   7.2
CU928178_658(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    33   7.2
AF209068_1(AF209068|pid:none) Drosophila melanogaster Mud protei...    33   7.2
(Q03410) RecName: Full=Synaptonemal complex protein 1;          ...    33   7.2
AE014185_221(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.2
AE017355_2631(AE017355|pid:none) Bacillus thuringiensis serovar ...    32   9.5
AY176327_73(AY176327|pid:none) Staphylococcus phage K, complete ...    32   9.5
AB436965_1(AB436965|pid:none) Staphylococcus aureus coa gene for...    32   9.5
CP000982_12(CP000982|pid:none) Borrelia duttonii Ly plasmid pl26...    32   9.5
AC109595_15(AC109595|pid:none) Oryza sativa (japonica cultivar-g...    32   9.5
CP000463_777(CP000463|pid:none) Rhodopseudomonas palustris BisA5...    32   9.5
CP001357_1700(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    32   9.5
CP000988_21(CP000988|pid:none) Borrelia duttonii Ly plasmid pl41...    32   9.5
AL844509_613(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.5
FJ407038_1(FJ407038|pid:none) Plasmodium falciparum isolate MAD2...    32   9.5
CP000976_319(CP000976|pid:none) Borrelia duttonii Ly, complete g...    32   9.5
FJ407046_1(FJ407046|pid:none) Plasmodium falciparum isolate 7G8 ...    32   9.5
CP001283_2833(CP001283|pid:none) Bacillus cereus AH820, complete...    32   9.5
(A6ZMC4) RecName: Full=Nuclear fusion protein KAR5; AltName: Ful...    32   9.5
FJ407035_1(FJ407035|pid:none) Plasmodium falciparum isolate T9/9...    32   9.5
CP000866_259(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...    32   9.5
EU708920_1(EU708920|pid:none) Canine rotavirus CU-1 NSP3 protein...    32   9.5
CP000001_2612(CP000001|pid:none) Bacillus cereus E33L, complete ...    32   9.5
CP000487_1250(CP000487|pid:none) Campylobacter fetus subsp. fetu...    32   9.5
CP001185_3(CP001185|pid:none) Thermosipho africanus TCF52B, comp...    32   9.5
(Q04746) RecName: Full=Nuclear fusion protein KAR5; AltName: Ful...    32   9.5
(P80200) RecName: Full=Cytotoxicity-associated immunodominant an...    32   9.5
AB158555_3(AB158555|pid:none) Staphylococcus aureus genes for hy...    32   9.5
FJ407039_1(FJ407039|pid:none) Plasmodium falciparum isolate K1 R...    32   9.5
B48281(B48281;A48281)cytotoxin-associated gene A protein cagA - ...    32   9.5
(Q9ZLT1) RecName: Full=Cytotoxicity-associated immunodominant an...    32   9.5
CP000999_1(CP000999|pid:none) Borrelia recurrentis A1 plasmid pl...    32   9.5
CP001202_53(CP001202|pid:none) Borrelia burgdorferi ZS7 plasmid ...    32   9.5
AF145355_1(AF145355|pid:none) Borrelia parkeri RepP3 (repP3), Re...    32   9.5
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.5
AP007255_2378(AP007255|pid:none) Magnetospirillum magneticum AMB...    32   9.5
CP001400_63(CP001400|pid:none) Sulfolobus islandicus M.14.25, co...    32   9.5
A64505(A64505)P115 homolog - Methanococcus jannaschii                  32   9.5

>AF143461_1(AF143461|pid:none) Borrelia hermsii strain HS1 BdrC3
           (bdrC3) and BdrC3- (bdrC3-) genes, complete cds.
          Length = 332

 Score = 49.3 bits (116), Expect = 7e-05
 Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
 Frame = +3

Query: 126 FKELITKSSFSLMTEIQXXXXXXXXXXXXXRKEMDSLKNEVHNLKKDVLGKHDYLWKKSE 305
           F   + K   SL ++I+               ++D+++NE+ +  KD+  K D +  + +
Sbjct: 51  FNLKLEKVGASLKSDIKDLDNKIDTVENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELK 110

Query: 306 SEMDKRFALLDKKLNE------DIIKRMNNFENRILDGXSSL---LDNVQGQLGSFKNDI 458
           S++      +D   NE      D+  +++N  N +      L   +DNV+ +L   K+DI
Sbjct: 111 SDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNEL---KSDI 167

Query: 459 QQVKNDVRSIESNQNFKLDQIMSEIKN 539
           + + N + ++E+N N K+D + +E+K+
Sbjct: 168 KDLDNKIDTVENNLNIKIDNVRNELKS 194

 Score = 45.8 bits (107), Expect = 8e-04
 Identities = 32/151 (21%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
 Frame = +3

Query: 96  QTDLTGDFNKFKELITKSSFSLMTEIQXXXXXXXXXXXXXRKEMDSLKNEVHNLKKDVLG 275
           + +L  D       I      L ++I+             + ++  L N++  ++ ++
Sbjct: 124 RNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTVENNLNI 183

Query: 276 KHDYLWKKSESE---MDKRFALLDKKLNEDIIKRMNNFENRILDGXSSLLDNVQGQLGSF 446
           K D +  + +S+   +D +   ++  LN  I    N  ++ I D   + +DNV+ +L
Sbjct: 184 KIDNVRNELKSDIKDLDNKIDTVENNLNIKIDNVRNELKSDIKD-LDNKIDNVRNEL--- 239

Query: 447 KNDIQQVKNDVRSIESNQNFKLDQIMSEIKN 539
           K+DI+ + N + ++E+N N K+D + +E+K+
Sbjct: 240 KSDIKDLDNKIDTVENNLNIKIDTVKNELKS 270

 Score = 32.3 bits (72), Expect = 9.5
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
 Frame = +3

Query: 252 NLKKDVLGKHDYLWKKSESEMDKRFALLDKKLNEDIIKRMNNFENRILDGXSSLLDNVQG 431
           NLK + +G      K    ++D +   ++  LN  I    N  ++ I D   + +DNV+
Sbjct: 52  NLKLEKVGAS---LKSDIKDLDNKIDTVENNLNIKIDNVRNELKSDIKD-LDNKIDNVRN 107

Query: 432 QLGSFKNDIQ--------QVKNDVRSIESNQNFKLDQIMSEIKNLKGSI 554
           +L S   D+         ++K+D++ +++  +   +++ S+IK+L   I
Sbjct: 108 ELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKI 156

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 612,822,181
Number of extensions: 9835596
Number of successful extensions: 29312
Number of sequences better than 10.0: 213
Number of HSP's gapped: 29123
Number of HSP's successfully gapped: 261
Length of query: 192
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 71
Effective length of database: 653,248,294
Effective search space: 46380628874
Effective search space used: 46380628874
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.44  gvh: 0.29  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U10617-1 is nuc