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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10609-1
Contig ID Contig-U10609-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10609-1 (Contig-U10609-1Q) /CSM_Contig/Contig-U10609-1Q.Seq.d
ACTGTTGGCCTACTGGTTTTAAAAAATAATTAATAAAAAATGAGATTTTT
ATCAAGTTTAATTATTTTATTAATTATCACCATATATTCAAGTGTTAATG
GTGATATTTATATGCATTCACCACCAGGTAGTAATAATCGTAATCAAGAA
CAAGGTCAAAACAGAGATAACAATCAACGTTTATTCAACTCTCAAAACAA
TGATAAAGGTGGTTATTGCAGAGGTGAAGCATTAGAATGGTATGAAAAAT
CCTATCTTCCAGTTGAATGGACCAATCAACATGGTTGTGGTAGTGGTGAA
ACCGAGTGTAACATTGTCATTCAATACATGTGTACTGATAATGCCAAAGC
TGCCGATACCGAATACATTCGTGATGGTACAGTGACTACCACAATCTCTG
CCAACGACATCACTCAATCCTCCACCAAAGAGACCAACGAATACAAGTTC
GGTATGCATGAATCATACCATCACTACCAAAATTGTACCGGTCGTGAACG
TAACAAGGGTCTTTTCATCGCCAACCAAAACATTGGTAACAATGCCGACA
GAACTCGTCAAAGTNNNNNNNNN
Gap no gap
Contig length 573
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 213831
End point 213284
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U10609
List of clone(s) 

est1=VFI267F,1,564
Translated Amino Acid sequence 
tvgllvlknn**KMRFLSSLIILLIITIYSSVNGDIYMHSPPGSNNRNQEQGQNRDNNQR
LFNSQNNDKGGYCRGEALEWYEKSYLPVEWTNQHGCGSGETECNIVIQYMCTDNAKAADT
EYIRDGTVTTTISANDITQSSTKETNEYKFGMHESYHHYQNCTGRERNKGLFIANQNIGN
NADRTRQSXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvlknn**KMRFLSSLIILLIITIYSSVNGDIYMHSPPGSNNRNQEQGQNRDNNQR
LFNSQNNDKGGYCRGEALEWYEKSYLPVEWTNQHGCGSGETECNIVIQYMCTDNAKAADT
EYIRDGTVTTTISANDITQSSTKETNEYKFGMHESYHHYQNCTGRERNKGLFIANQNIGN
NADRTRQSXXX


Frame B:
llaywf*kiinkk*dfyqv*lfy*lspyiqvlmvificihhqvviiviknkvkteitinv
ystlktmikvviaevkh*ngmknpifqlngpinmvvvvvkpsvtlsfntcvlimpklpip
ntfvmvq*lpqslpttslnpppkrptntssvcmnhtittkivpvvnvtrvfssptktlvt
mptelvkvxx


Frame C:
cwptgfkk*likneifikfnyfinyhhifkc*w*ylyafttr***s*srtrskqr*qstf
iqlskq**rwllqr*sirmv*kilsss*mdqstwlw*w*nrv*hchsihvy**cqscryr
ihs*wysdyhnlcqrhhsilhqrdqriqvrya*iipslpklyrs*t*qgsfhrqpkhw*q
crqnsskxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10609-1 (Contig-U10609-1Q)
/CSM_Contig/Contig-U10609-1Q.Seq.d
         (573 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10609-1 (Contig-U10609-1Q) /CSM_Contig/Conti...  1037  0.0
Contig-U14654-1 (Contig-U14654-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14278-1 (Contig-U14278-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14272-1 (Contig-U14272-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13962-1 (Contig-U13962-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13916-1 (Contig-U13916-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13896-1 (Contig-U13896-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13546-1 (Contig-U13546-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Conti...    36  0.040

>Contig-U10609-1 (Contig-U10609-1Q) /CSM_Contig/Contig-U10609-1Q.Seq.d
          Length = 573

 Score = 1037 bits (523), Expect = 0.0
 Identities = 523/523 (100%)
 Strand = Plus / Plus

                                                                       
Query: 42  gagatttttatcaagtttaattattttattaattatcaccatatattcaagtgttaatgg 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  gagatttttatcaagtttaattattttattaattatcaccatatattcaagtgttaatgg 101

                                                                       
Query: 102 tgatatttatatgcattcaccaccaggtagtaataatcgtaatcaagaacaaggtcaaaa 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgatatttatatgcattcaccaccaggtagtaataatcgtaatcaagaacaaggtcaaaa 161

                                                                       
Query: 162 cagagataacaatcaacgtttattcaactctcaaaacaatgataaaggtggttattgcag 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cagagataacaatcaacgtttattcaactctcaaaacaatgataaaggtggttattgcag 221

                                                                       
Query: 222 aggtgaagcattagaatggtatgaaaaatcctatcttccagttgaatggaccaatcaaca 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aggtgaagcattagaatggtatgaaaaatcctatcttccagttgaatggaccaatcaaca 281

                                                                       
Query: 282 tggttgtggtagtggtgaaaccgagtgtaacattgtcattcaatacatgtgtactgataa 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tggttgtggtagtggtgaaaccgagtgtaacattgtcattcaatacatgtgtactgataa 341

                                                                       
Query: 342 tgccaaagctgccgataccgaatacattcgtgatggtacagtgactaccacaatctctgc 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgccaaagctgccgataccgaatacattcgtgatggtacagtgactaccacaatctctgc 401

                                                                       
Query: 402 caacgacatcactcaatcctccaccaaagagaccaacgaatacaagttcggtatgcatga 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caacgacatcactcaatcctccaccaaagagaccaacgaatacaagttcggtatgcatga 461

                                                                       
Query: 462 atcataccatcactaccaaaattgtaccggtcgtgaacgtaacaagggtcttttcatcgc 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atcataccatcactaccaaaattgtaccggtcgtgaacgtaacaagggtcttttcatcgc 521

                                                      
Query: 522 caaccaaaacattggtaacaatgccgacagaactcgtcaaagt 564
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caaccaaaacattggtaacaatgccgacagaactcgtcaaagt 564


 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  actgttggcctactggtt 18
          ||||||||||||||||||
Sbjct: 1  actgttggcctactggtt 18


>Contig-U14654-1 (Contig-U14654-1Q) /CSM_Contig/Contig-U14654-1Q.Seq.d
          Length = 116

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  actgttggcctactggtt 18
          ||||||||||||||||||
Sbjct: 1  actgttggcctactggtt 18


>Contig-U14278-1 (Contig-U14278-1Q) /CSM_Contig/Contig-U14278-1Q.Seq.d
          Length = 1214

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  actgttggcctactggtt 18
          ||||||||||||||||||
Sbjct: 1  actgttggcctactggtt 18


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6398
Number of Sequences: 6905
Number of extensions: 6398
Number of successful extensions: 1146
Number of sequences better than 10.0: 644
length of query: 573
length of database: 5,674,871
effective HSP length: 16
effective length of query: 557
effective length of database: 5,564,391
effective search space: 3099365787
effective search space used: 3099365787
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.20
Homology vs DNA 
Query= Contig-U10609-1 (Contig-U10609-1Q) /CSM_Contig/Contig-U10609-1Q.Seq.d
         (573 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ413964) Dictyostelium discoideum cDNA clone:ddv17e18, 5' ...   965   0.0    2
(AB120173) Dictyostelium discoideum DD3-3 mRNA for hypotheti...   965   0.0    1
(FC851704) CBHN6974.fwd CBHN Metridium senile tentacle Metri...    46   2e-04  2
(FC850220) CBHN6205.fwd CBHN Metridium senile tentacle Metri...    46   2e-04  2
(FC849425) CBHN5773.fwd CBHN Metridium senile tentacle Metri...    46   2e-04  2
(FC854631) CBHN8597.fwd CBHN Metridium senile tentacle Metri...    46   2e-04  2
(CI766603) Oryza sativa Japonica Group cDNA, clone: J10B0046...    40   3e-04  3
(FE580976) CAXG13575.fwd Amphioxus Branchiostoma floridae un...    56   0.001  1
(AC180603) Strongylocentrotus purpuratus clone R3-3092N08, W...    38   0.20   2
(DN783202) 90978120 Sea Urchin primary mesenchyme cell cDNA ...    38   0.25   2
(CD323116) StrPu537.001478 Sea urchin embryo 20hr blastula s...    38   0.26   2
(CX678736) ydc31g02.y2 Sea urchin EST Lib1 Strongylocentrotu...    38   0.26   2
(CX681345) ydb87b12.y2 Sea urchin EST Lib1 Strongylocentrotu...    38   0.26   2
(BU234362) 603410355F1 CSEQCHN24 Gallus gallus cDNA clone Ch...    48   0.35   1
(AC157991) Mus musculus chromosome 18, clone RP23-335B10, co...    46   1.4    1
(AC102124) Mus musculus chromosome 18, clone RP23-188D1, com...    46   1.4    1
(EJ549570) 1092959431383 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.4    1
(EJ522002) 1092955148512 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.4    1
(DV441803) CV01005A2B04.f1 CV01-normalized library Manihot e...    46   1.4    1
(BW801716) Branchiostoma floridae cDNA, larva clone:bflv022f...    46   1.4    1
(EV813925) BGBV-aae88d11.g1 Snail_EST_pSMART Biomphalaria gl...    46   1.4    1
(AL049859) Human DNA sequence from clone RP5-826A18 on chrom...    42   3.1    2
(AC192842) Pan troglodytes BAC clone CH251-43I12 from chromo...    42   6.3    2

>(BJ413964) Dictyostelium discoideum cDNA clone:ddv17e18, 5' end,
           single read.
          Length = 564

 Score =  965 bits (487), Expect(2) = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Plus


Query: 78  caccatatattcaagtgttaatggtgatatttatatgcattcaccaccaggtagtaataa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  caccatatattcaagtgttaatggtgatatttatatgcattcaccaccaggtagtaataa 137


Query: 138 tcgtaatcaagaacaaggtcaaaacagagataacaatcaacgtttattcaactctcaaaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tcgtaatcaagaacaaggtcaaaacagagataacaatcaacgtttattcaactctcaaaa 197


Query: 198 caatgataaaggtggttattgcagaggtgaagcattagaatggtatgaaaaatcctatct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 caatgataaaggtggttattgcagaggtgaagcattagaatggtatgaaaaatcctatct 257


Query: 258 tccagttgaatggaccaatcaacatggttgtggtagtggtgaaaccgagtgtaacattgt 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tccagttgaatggaccaatcaacatggttgtggtagtggtgaaaccgagtgtaacattgt 317


Query: 318 cattcaatacatgtgtactgataatgccaaagctgccgataccgaatacattcgtgatgg 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cattcaatacatgtgtactgataatgccaaagctgccgataccgaatacattcgtgatgg 377


Query: 378 tacagtgactaccacaatctctgccaacgacatcactcaatcctccaccaaagagaccaa 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tacagtgactaccacaatctctgccaacgacatcactcaatcctccaccaaagagaccaa 437


Query: 438 cgaatacaagttcggtatgcatgaatcataccatcactaccaaaattgtaccggtcgtga 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgaatacaagttcggtatgcatgaatcataccatcactaccaaaattgtaccggtcgtga 497


Query: 498 acgtaacaagggtcttttcatcgccaaccaaaacattggtaacaatgccgacagaactcg 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acgtaacaagggtcttttcatcgccaaccaaaacattggtaacaatgccgacagaactcg 557


Query: 558 tcaaagt 564
           |||||||
Sbjct: 558 tcaaagt 564

 Score = 32.2 bits (16), Expect(2) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 1  actgttggcctactgg 16
          ||||||||||||||||
Sbjct: 1  actgttggcctactgg 16

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 449,943,160
Number of extensions: 22945175
Number of successful extensions: 1833253
Number of sequences better than 10.0: 25
Length of query: 573
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 550
Effective length of database: 93,106,754,628
Effective search space: 51208715045400
Effective search space used: 51208715045400
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10609-1 (Contig-U10609-1Q) /CSM_Contig/Contig-U10609-1Q.Seq.d
         (573 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB120173_1(AB120173|pid:none) Dictyostelium discoideum DD3-3 mRN...   339   3e-92
AF374376_10(AF374376|pid:none) Oikopleura dioica clone BAC clone...   107   3e-22
AF483077_1(AF483077|pid:none) Boltenia villosa transmembrane rec...    86   7e-16
AE014188_55(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    42   0.012
AL844507_149(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.058
AC115684_28(AC115684|pid:none) Dictyostelium discoideum chromoso...    39   0.13
AL844505_271(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.17
AM778945_56(AM778945|pid:none) Microcystis aeruginosa PCC 7806 g...    37   0.37
AY191013_1(AY191013|pid:none) Dictyostelium discoideum autophagy...    37   0.38
AE014187_232(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.38
(Q55CC5) RecName: Full=Beclin-1-like protein A; AltName: Full=Au...    37   0.38
(Q90X49) RecName: Full=Coiled-coil domain-containing protein 80;...    37   0.49
AE014185_210(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.65
(Q54R73) RecName: Full=Uncharacterized protein DDB_G0283357;           36   0.65
CP001338_1743(CP001338|pid:none) Candidatus Methanosphaerula pal...    35   1.1
AL844507_137(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.1
AC116986_36(AC116986|pid:none) Dictyostelium discoideum chromoso...    35   1.4
(Q55GJ2) RecName: Full=Probable serine/threonine-protein kinase ...    35   1.4
AE001362_173(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.4
CP001337_114(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    35   1.9
CP001483_29(CP001483|pid:none) Borrelia burgdorferi CA-11.2a pla...    35   1.9
AF409199_1(AF409199|pid:none) Shuttle vector pCE320, partial seq...    35   1.9
(Q869T7) RecName: Full=Serine/threonine-protein kinase pakF;    ...    35   1.9
(Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ...    35   1.9
AL844508_102(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.5
CU633872_316(CU633872|pid:none) Podospora anserina genomic DNA c...    34   3.2
AE014185_358(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.2
AE014187_60(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    34   3.2
EF458162_18(EF458162|pid:none) Fowl adenovirus 10, partial genome.     33   4.1
CP000686_1230(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    33   4.1
AF160185_8(AF160185|pid:none) Fowl adenovirus 10 ORF9 gene, part...    33   4.1
FJ406890_1(FJ406890|pid:none) Plasmodium falciparum isolate HB3 ...    33   4.2
AL844509_596(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AE014185_243(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AE014188_284(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
DQ471812_1(DQ471812|pid:none) Human bocavirus isolate CHSD1 NS1 ...    33   4.2
AL844504_25(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    33   4.2
AL844509_625(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
A37232(A37232) mucin, tracheal (AMN-22) - human (fragment)  &M57...    33   5.4
AF027872_1(AF027872|pid:none) Trypanosoma cruzi mucin-like prote...    33   5.4
EU480778_1(EU480778|pid:none) Caenorhabditis remanei strain PB24...    33   5.5
EU480770_1(EU480770|pid:none) Caenorhabditis remanei strain PB21...    33   5.5
AL929358_58(AL929358|pid:none) Plasmodium falciparum strain 3D7,...    33   5.5
EU480773_1(EU480773|pid:none) Caenorhabditis remanei strain PB21...    33   5.5
AC115598_3(AC115598|pid:none) Dictyostelium discoideum chromosom...    33   5.5
AL844508_306(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.5
EU480780_1(EU480780|pid:none) Caenorhabditis remanei strain PB25...    33   5.5
CP001268_16(CP001268|pid:none) Borrelia burgdorferi 156a plasmid...    33   5.5
AL844509_431(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.5
EF490810_1(EF490810|pid:none) Flaccisagitta enflata Mox mRNA, co...    33   5.5
CP001499_30(CP001499|pid:none) Borrelia burgdorferi 94a plasmid ...    33   7.1
BX842654_59(BX842654|pid:none) Bdellovibrio bacteriovorus comple...    33   7.1
DQ471815_1(DQ471815|pid:none) Human bocavirus isolate CHSD5 NS1 ...    33   7.1
(Q8T806) RecName: Full=Uncharacterized protein DDB_G0271850;  &A...    33   7.1
CP001496_30(CP001496|pid:none) Borrelia burgdorferi 94a plasmid ...    33   7.1
AE009951_296(AE009951|pid:none) Fusobacterium nucleatum subsp. n...    33   7.1
CP001206_25(CP001206|pid:none) Borrelia burgdorferi ZS7 plasmid ...    33   7.1
AP008937_733(AP008937|pid:none) Lactobacillus fermentum IFO 3956...    33   7.1
(Q54XZ5) RecName: Full=Probable serine/threonine-protein kinase ...    33   7.1
AC136217_10(AC136217|pid:none) Oryza sativa (japonica cultivar-g...    33   7.1
AE014185_347(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.1
CP001549_32(CP001549|pid:none) Borrelia burgdorferi 29805 plasmi...    33   7.1
CP001338_189(CP001338|pid:none) Candidatus Methanosphaerula palu...    32   9.2
AF043448_1(AF043448|pid:none) Cercopithecus aethiops hepatitis A...    32   9.2
AF043449_1(AF043449|pid:none) Cercopithecus aethiops hepatitis A...    32   9.2
AP008207_2765(AP008207|pid:none) Oryza sativa (japonica cultivar...    32   9.3
AE014185_55(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    32   9.3
AC116979_19(AC116979|pid:none) Dictyostelium discoideum chromoso...    32   9.3
(Q54SZ6) RecName: Full=Putative uncharacterized protein DDB_G028...    32   9.3
AK071275_1(AK071275|pid:none) Oryza sativa Japonica Group cDNA c...    32   9.3
(Q54G21) RecName: Full=FK506-binding protein 5;          EC=5.2....    32   9.3
AL844508_201(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.3
(Q54IF9) RecName: Full=Myb-like protein G;                             32   9.3
AP003368_24(AP003368|pid:none) Oryza sativa Japonica Group genom...    32   9.3
(Q54Q48) RecName: Full=Putative uncharacterized protein DDB_G028...    32   9.3

>AB120173_1(AB120173|pid:none) Dictyostelium discoideum DD3-3 mRNA
           for hypothetical protein, complete cds.
          Length = 616

 Score =  339 bits (870), Expect = 3e-92
 Identities = 160/175 (91%), Positives = 160/175 (91%)
 Frame = +1

Query: 40  MRFXXXXXXXXXXXXXXXVNGDIYMHSPPGSNNRNQEQGQNRDNNQRLFNSQNNDKGGYC 219
           MRF               VNGDIYMHSPPGSNNRNQEQGQNRDNNQRLFNSQNNDKGGYC
Sbjct: 1   MRFLSSLIILLIITIYSSVNGDIYMHSPPGSNNRNQEQGQNRDNNQRLFNSQNNDKGGYC 60

Query: 220 RGEALEWYEKSYLPVEWTNQHGCGSGETECNIVIQYMCTDNAKAADTEYIRDGTVTTTIS 399
           RGEALEWYEKSYLPVEWTNQHGCGSGETECNIVIQYMCTDNAKAADTEYIRDGTVTTTIS
Sbjct: 61  RGEALEWYEKSYLPVEWTNQHGCGSGETECNIVIQYMCTDNAKAADTEYIRDGTVTTTIS 120

Query: 400 ANDITQSSTKETNEYKFGMHESYHHYQNCTGRERNKGLFIANQNIGNNADRTRQS 564
           ANDITQSSTKETNEYKFGMHESYHHYQNCTGRERNKGLFIANQNIGNNADRTRQS
Sbjct: 121 ANDITQSSTKETNEYKFGMHESYHHYQNCTGRERNKGLFIANQNIGNNADRTRQS 175

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 937,905,101
Number of extensions: 20525545
Number of successful extensions: 88181
Number of sequences better than 10.0: 75
Number of HSP's gapped: 74657
Number of HSP's successfully gapped: 77
Length of query: 191
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 70
Effective length of database: 653,248,294
Effective search space: 45727380580
Effective search space used: 45727380580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.99  gvh: 0.66  alm: 0.56  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for Contig-U10609-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0