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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U00425-1
Contig ID Contig-U00425-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Contig-U00425-1Q.Seq.d
CACTGTTGGCCTACTGGTATTCTTTTATTTTAATATATTTATATATATAA
TATTTATATATATTTATATATATATATAACTTTAATTTTCCCTTTCAAAC
TTTATTTATTTGCAAAAAAAAA----------TATTTGAAAGTGATGAAG
AAGAAGAGCAAGAAGAAGTGGAAGATTATAGTGAAAACCACCAACAAAAA
TCAACTTCATCTTCATTCCCAAAATTCCCTTCAAATAGTCACAATAATGA
ATATAATCAACCACCACCACCAGCATACGAATTTAAACAATCACCACCAC
AACAACATAAACAGGTCACCACCACAACAACATCACAATAGTCATGATAA
TGAAGCTTTAATTAAATATCAACAACAAGTTGCTCAACAAAATTTAACTA
TTCAAAAACAAAAACATCAAAATCAAATGTTACAAGATGAGGTGGAACAA
AAACAACAACAAATTCAACTTCAACAACAACAACTTCAACAACAACAACA
ACAAATCCAACTACTTCAAAAACAAATTCAACAACAACAAAAACAATTAA
TGAGCGGTGGCGGTGGAGGTGGCAATATGTCAATGAACTTAAATCATACA
CCATCTGATACCGATAAAGCAAGTGCTGAGAAATATTCTAAATGGGTAAT
CAGTTCACTTCAAT
Gap gap included
Contig length 654
Chromosome number (1..6, M) 2F
Chromosome length 193677
Start point 48096
End point 47458
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U00425
List of clone(s) 

est1=AFI470F,1,123
est2=VSK291Z,124,656
est3=CFG332Z,185,553
est4=AFI470Z,191,440
Translated Amino Acid sequence 
hcwptgillf*YIYIYNIYIYLYIYITLIFPFKLYLFAKK---

---YLKVMKKKSKKKWKIIVKTTNKNQLHLHSQNSLQIVTIMNIINHHHQHTNLNNHHHN
NINRSPPQQHHNSHDNEALIKYQQQVAQQNLTIQKQKHQNQMLQDEVEQKQQQIQLQQQQ
LQQQQQQIQLLQKQIQQQQKQLMSGGGGGGNMSMNLNHTPSDTDKASAEKYSKWVISSLQ
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgillf*YIYIYNIYIYLYIYITLIFPFKLYLFAKK---

---YLKVMKKKSKKKWKIIVKTTNKNQLHLHSQNSLQIVTIMNIINHHHQHTNLNNHHHN
NINRSPPQQHHNSHDNEALIKYQQQVAQQNLTIQKQKHQNQMLQDEVEQKQQQIQLQQQQ
LQQQQQQIQLLQKQIQQQQKQLMSGGGGGGNMSMNLNHTPSDTDKASAEKYSKWVISSLQ

Frame B:
tvgllvffyfnifiyiifiyiyiyi*l*fslsnfiylqkk---

---i*k**rrrarrsgrl**kpptkinfifipkipfk*sq**i*sttttsiri*titttt
t*tghhhnnitivmimkl*lninnkllnki*lfknknikikcykmrwnknnnkfnfnnnn
fnnnnnksnyfknkfnnnknn**avavevaicq*t*iihhlipikqvlrnilng*svhfn

Frame C:
llaywysfiliylyi*ylyifiyiynfnfpfqtlfickkk---

---fesdeeeeqeevedysenhqqkstsssfpkfpsnshnneynqppppayefkqsppqq
hkqvtttttsq*s***sfn*isttscstkfnysktktsksnvtr*ggtktttnststttt
stttttnpttsktnstttktinerwrwrwqyvnelksyti*yr*skc*eif*mgnqfts
own update 2004. 6.21
Homology vs CSM-cDNA 
Query= Contig-U00425-1 (Contig-U00425-1Q)
/CSM_Contig/Contig-U00425-1Q.Seq.d
         (664 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Conti...   498  e-141
Contig-U15736-1 (Contig-U15736-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U15649-1 (Contig-U15649-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U15640-1 (Contig-U15640-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U15323-1 (Contig-U15323-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U15043-1 (Contig-U15043-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11659-1 (Contig-U11659-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U02065-1 (Contig-U02065-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U16280-1 (Contig-U16280-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U16170-1 (Contig-U16170-1Q) /CSM_Contig/Conti...    42  0.001

>Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Contig-U00425-1Q.Seq.d
          Length = 664

 Score =  498 bits (251), Expect = e-141
 Identities = 251/251 (100%)
 Strand = Plus / Plus

                                                                       
Query: 133 tatttgaaagtgatgaagaagaagagcaagaagaagtggaagattatagtgaaaaccacc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tatttgaaagtgatgaagaagaagagcaagaagaagtggaagattatagtgaaaaccacc 192

                                                                       
Query: 193 aacaaaaatcaacttcatcttcattcccaaaattcccttcaaatagtcacaataatgaat 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aacaaaaatcaacttcatcttcattcccaaaattcccttcaaatagtcacaataatgaat 252

                                                                       
Query: 253 ataatcaaccaccaccaccagcatacgaatttaaacaatcaccaccacaacaacataaac 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ataatcaaccaccaccaccagcatacgaatttaaacaatcaccaccacaacaacataaac 312

                                                                       
Query: 313 aggtcaccaccacaacaacatcacaatagtcatgataatgaagctttaattaaatatcaa 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggtcaccaccacaacaacatcacaatagtcatgataatgaagctttaattaaatatcaa 372

                      
Query: 373 caacaagttgc 383
           |||||||||||
Sbjct: 373 caacaagttgc 383


 Score =  234 bits (118), Expect = 1e-61
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 547 ttaatgagcggtggcggtggaggtggcaatatgtcaatgaacttaaatcatacaccatct 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttaatgagcggtggcggtggaggtggcaatatgtcaatgaacttaaatcatacaccatct 606

                                                                     
Query: 607 gataccgataaagcaagtgctgagaaatattctaaatgggtaatcagttcacttcaat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gataccgataaagcaagtgctgagaaatattctaaatgggtaatcagttcacttcaat 664


 Score = 69.9 bits (35), Expect = 5e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 79  actttaattttccctttcaaactttatttatttgc 113
           |||||||||||||||||||||||||||||||||||
Sbjct: 79  actttaattttccctttcaaactttatttatttgc 113


 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  cactgttggcctactggtattc 22
          ||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggtattc 22


 Score = 36.2 bits (18), Expect = 0.066
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 428 tgttacaagatgaggtgg 445
           ||||||||||||||||||
Sbjct: 428 tgttacaagatgaggtgg 445


>Contig-U15736-1 (Contig-U15736-1Q) /CSM_Contig/Contig-U15736-1Q.Seq.d
          Length = 4084

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 143  tgatgaagaagaagagcaagaagaag 168
            ||||||||||||||| ||||||||||
Sbjct: 1902 tgatgaagaagaagaacaagaagaag 1927


 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 143  tgatgaagaagaaga 157
            |||||||||||||||
Sbjct: 2411 tgatgaagaagaaga 2425


>Contig-U15649-1 (Contig-U15649-1Q) /CSM_Contig/Contig-U15649-1Q.Seq.d
          Length = 2807

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 1   cactgttggcctactggtattc 22
           ||||||||||||||||||||||
Sbjct: 719 cactgttggcctactggtattc 740


 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 2  actgttggcctactgg 17
          ||||||||||||||||
Sbjct: 1  actgttggcctactgg 16


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,014
Number of Sequences: 8402
Number of extensions: 18014
Number of successful extensions: 3285
Number of sequences better than 10.0: 898
length of query: 664
length of database: 8,075,542
effective HSP length: 16
effective length of query: 648
effective length of database: 7,941,110
effective search space: 5145839280
effective search space used: 5145839280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.16
Homology vs DNA 
Query= Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Contig-U00425-1Q.Seq.d
         (664 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270950) Dictyostelium discoideum vegetative cDNA clone:VS...   303   e-142  3
(BJ347257) Dictyostelium discoideum cDNA clone:dda26f18, 3' ...   242   1e-59  1
(BJ372630) Dictyostelium discoideum cDNA clone:ddc13p07, 3' ...   182   2e-52  3
(BJ343933) Dictyostelium discoideum cDNA clone:dda17l18, 3' ...    88   3e-19  2
(BJ326694) Dictyostelium discoideum cDNA clone:dda17l18, 5' ...    70   2e-14  2
(BJ329866) Dictyostelium discoideum cDNA clone:dda26f18, 5' ...    70   1e-07  1
(EC850328) HAE00003885 Home-made, regular (lib1_ha) Histiona...    56   0.002  1
(G73356) RW5 Bovine genomic DNA Bos taurus STS genomic, sequ...    54   0.007  1
(S73144) bone sialoprotein [cattle, fetal bone cells, mRNA, ...    54   0.007  1
(AC162409) Bos taurus clone CH240-121E19, WORKING DRAFT SEQU...    54   0.007  1
(AC185799) Bos taurus clone RP42-175H20, WORKING DRAFT SEQUE...    54   0.007  1
(AC185690) Bos taurus clone RP42-290E18, WORKING DRAFT SEQUE...    54   0.007  1
(AV598733) Bos taurus cDNA clone:E1CA039G04, 5' end, express...    54   0.007  1
(DY519446) sh3P0044B15_F.ab1 adult sheep fracture callus 10d...    54   0.007  1
(DY517591) sh3P0038E09_F.ab1 adult sheep fracture callus 10d...    54   0.007  1
(DY514291) sh3P0027L22_F.ab1 adult sheep fracture callus 10d...    54   0.007  1
(DY508365) sh3P0009D09_F.ab1 adult sheep fracture callus 10d...    54   0.007  1
(DY508305) sh3P0009A14_F.ab1 adult sheep fracture callus 10d...    54   0.007  1
(DY507650) sh3P0006P14_F.ab1 adult sheep fracture callus 10d...    54   0.007  1
(DY490648) sh1-zg15_l0.s2 adult sheep fracture callus pool O...    54   0.007  1
(DY488827) sh1-ri02_l0.s2 adult sheep fracture callus pool O...    54   0.007  1
(DY487982) sh1-oc09_l0.s2 adult sheep fracture callus pool O...    54   0.007  1
(DY484543) sh1-bon10_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY484350) sh1-bnk15_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY484018) sh1-bmc02_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY483043) sh1-bhl06_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY482315) sh1-bd07_l0.s2 adult sheep fracture callus pool O...    54   0.007  1
(DY481241) sh1-ayl09_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY480522) sh1-avf12_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY480470) sh1-avc07_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY479451) sh1-aqm24_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY476674) sh1-aef03_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY476375) sh1-adb17_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(DY475786) sh1-aan11_l0.s2 adult sheep fracture callus pool ...    54   0.007  1
(GH546333) 17_H09 Velvet tips tissue cDNA Library of Northea...    54   0.007  1
(AM920431) Penicillium chrysogenum Wisconsin 54-1255 complet...    52   0.028  1
(EY150760) CBTN12798.g1_L07.ab1:P Triphysaria pusilla root t...    52   0.028  1
(EX668529) JS3B038JG Heat stressed Fragaria vesca (strain Ha...    52   0.028  1
(EY299202) CAWX14334.rev CAWX Helobdella robusta Primary Ear...    44   0.031  2
(BJ392469) Dictyostelium discoideum cDNA clone:dds27c23, 5' ...    42   0.055  2
(EY345042) CAWZ13636.rev CAWZ Helobdella robusta Primary Lat...    44   0.061  2
(EY292852) CAWX10792.rev CAWX Helobdella robusta Primary Ear...    44   0.063  2
(EY313346) CAWX24904.rev CAWX Helobdella robusta Primary Ear...    44   0.066  2
(EY292012) CAWX10320.rev CAWX Helobdella robusta Primary Ear...    44   0.067  2
(EY320423) CAWX7379.rev CAWX Helobdella robusta Primary Earl...    44   0.068  2
(EY292013) CAWX10320.fwd CAWX Helobdella robusta Primary Ear...    44   0.077  2
(AE014181) Mus musculus piebald deletion region section 9 of...    50   0.11   1
(AC168880) Mus musculus BAC clone RP23-313A10 from chromosom...    50   0.11   1
(AC167248) Mus musculus BAC clone RP23-393B9 from chromosome...    50   0.11   1
(AC164297) Mus musculus BAC clone RP24-358L4 from chromosome...    50   0.11   1
(AC138716) Mus musculus BAC clone RP23-241B5 from chromosome...    50   0.11   1
(AC122323) Mus musculus BAC clone RP23-326N21 from chromosom...    50   0.11   1
(CR382129) Yarrowia lipolytica strain CLIB122 chromosome C c...    50   0.11   1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.11   1
(AP003257) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.11   1
(EA695001) Sequence 73880 from patent US 7365185.                  50   0.11   1
(EA636026) Sequence 14905 from patent US 7365185.                  50   0.11   1
(AC098185) Rattus norvegicus clone CH230-140H7, WORKING DRAF...    50   0.11   1
(EI274838) OR__Ba0086D10.f OR__Ba Oryza rufipogon genomic cl...    50   0.11   1
(EI245711) OR__Ba0046H04.f OR__Ba Oryza rufipogon genomic cl...    50   0.11   1
(CW666084) OG_BBa0020O14.r OG_BBa Oryza glaberrima genomic c...    50   0.11   1
(CL848346) OR_CBa0075M21.r OR_CBa Oryza rufipogon genomic cl...    50   0.11   1
(AG906635) Oryza sativa Indica Group genomic DNA, BAC end se...    50   0.11   1
(AG560273) Mus musculus molossinus DNA, clone:MSMg01-479G01....    50   0.11   1
(CL788334) OR_BBa0106M05.r OR_BBa Oryza nivara genomic clone...    50   0.11   1
(CL708975) OR_BBa0030I10.r OR_BBa Oryza nivara genomic clone...    50   0.11   1
(CL623188) OR_BBa0018E13.f OR_BBa Oryza nivara genomic clone...    50   0.11   1
(EH746399) CNMS590.b2_K04.ab1 CNM(LMS) spotted knapweed Cent...    50   0.11   1
(DV148821) CV03077B2E10.f1 CV03-normalized library Euphorbia...    50   0.11   1
(FK913250) EST_lsal_evj_934453 lsalevj mixed_tissue_mixed_st...    50   0.11   1
(FK913249) EST_lsal_evj_949429 lsalevj mixed_tissue_mixed_st...    50   0.11   1
(BJ336903) Dictyostelium discoideum cDNA clone:dda55g13, 5' ...    42   0.18   2
(AC200041) Zea mays chromosome 10 clone CH201-467F9; ZMMBBc0...    46   0.19   2
(AC194430) Zea mays chromosome 10 clone CH201-156B23; ZMMBBc...    46   0.20   2
(BJ363798) Dictyostelium discoideum cDNA clone:ddc28g15, 5' ...    36   0.20   2
(BJ396922) Dictyostelium discoideum cDNA clone:dds44o09, 5' ...    42   0.20   2
(DC240724) Petunia x hybrida cDNA, clone: PET04SEQ03111A.          44   0.23   2
(CJ465661) Macaca fascicularis mRNA, clone: QnpA-14783, 5' e...    38   0.25   2
(CJ484674) Macaca fascicularis mRNA, clone: QtsA-12226, 5' e...    42   0.25   2
(DY825657) CTOY17194.b1_D04.ab1 CTO(XYZ) dandelion Taraxacum...    42   0.28   2
(FD461728) LARVN70TR Haematobia irritans 1st Instar Larvae H...    42   0.35   2
(EU411891) TSA: Hippoglossus hippoglossus all_halibut.845.C1...    48   0.43   1
(AP009628) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.43   1
(AC099842) Homo sapiens chromosome 11, clone RP11-747E23, co...    48   0.43   1
(AC074123) Homo sapiens chromosome 11 clone RP11-747E23, WOR...    48   0.43   1
(AP010200) Lotus japonicus genomic DNA, clone: LjT41F16, TM1...    48   0.43   1
(AC213048) Zea mays chromosome 1 clone CH201-197B22; ZMMBBc0...    48   0.43   1
(AC210313) Zea mays chromosome 1 clone CH201-214H1; ZMMBBc02...    48   0.43   1
(AC195923) Zea mays chromosome 8 clone ZMMBBb-242M20; ZMMBBb...    48   0.43   1
(AC179509) Strongylocentrotus purpuratus clone R3-1035G8, WO...    48   0.43   1
(AC174556) Strongylocentrotus purpuratus clone R3-1113I14, W...    48   0.43   1
(DE256364) Oryzias latipes DNA, clone: ola1-140I21.R, genomi...    48   0.43   1
(ES223709) MpHnorm_ag3_M12 Myzus persicae, tobacco lineage, ...    48   0.43   1
(ES220446) MpGnorm_ag6_K06 Myzus persicae, tobacco lineage, ...    48   0.43   1
(EB037773) lk_hhL3_0002n07.pDNRF2 lk_hhL3 Hippoglossus hippo...    48   0.43   1
(DY490574) sh1-za08_l0.s2 adult sheep fracture callus pool O...    48   0.43   1
(DY477182) sh1-agl05_l0.s2 adult sheep fracture callus pool ...    48   0.43   1
(DY476081) sh1-ac21_l0.s2 adult sheep fracture callus pool O...    48   0.43   1
(DR974716) CHUT001D11.g3 Primary Chick Utricle Subtraction G...    48   0.43   1
(FM008175) Dicentrarchus labrax EST, clone cDN25P0005H18, 5'...    48   0.43   1
(CP000377) Silicibacter sp. TM1040, complete genome.               48   0.43   1
(AJ520099) Dictyostelium discoideum mRNA for (ADP-ribosyl)tr...    42   0.57   3
(CI058440) Oryza sativa Japonica Group cDNA, clone: 014-M004...    38   0.66   2
(AC199565) Zea mays chromosome unknown clone CH201-20C18; ZM...    44   0.68   4
(AC203432) Zea mays chromosome 3 clone CH201-140C19; ZMMBBc0...    42   0.73   5
(CU012060) M.truncatula DNA sequence from clone MTH2-62K13 o...    42   0.92   3
(CJ436407) Macaca fascicularis mRNA, clone: QccE-13518, 5' e...    36   0.92   2
(CJ461093) Macaca fascicularis mRNA, clone: QmoA-13954, 5' e...    40   0.93   2
(AB017063) Arabidopsis thaliana genomic DNA, chromosome 5, T...    36   0.95   2
(CJ487963) Macaca fascicularis mRNA, clone: QtsA-15652, 5' e...    36   0.98   2
(CJ470086) Macaca fascicularis mRNA, clone: QnpA-21593, 5' e...    36   0.99   2
(CJ472498) Macaca fascicularis mRNA, clone: QorA-12326, 5' e...    36   1.00   2
(CJ470191) Macaca fascicularis mRNA, clone: QnpA-21725, 5' e...    36   1.0    2
(BT002953) Arabidopsis thaliana clone RAFL14-83-D16 (R20328)...    36   1.1    2
(AK175154) Arabidopsis thaliana mRNA, complete cds, clone: R...    36   1.1    2
(AC209703) Zea mays chromosome 6 clone CH201-153G19; ZMMBBc0...    44   1.1    4
(FG192934) AGN_PNL219df1_d1.trimmed.seq AGN_PNL Nicotiana ta...    32   1.2    2
(GC474459) Sequence 55 from patent US 7384750.                     36   1.2    3
(BD097413) Nucleic acid sequences characterized by their enh...    36   1.2    3
(BD083766) Nucleic acid sequence characterized in that expre...    36   1.2    3
(BZ353775) SALK_122128.45.05.x Arabidopsis thaliana TDNA ins...    36   1.2    2
(BP843232) Arabidopsis thaliana cDNA clone:RAFL21-57-G12, 5'...    36   1.2    2
(AL082627) Arabidopsis thaliana genome survey sequence T7 en...    36   1.2    2
(AM434354) Vitis vinifera contig VV78X234553.4, whole genome...    44   1.4    2
(CR382123) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    46   1.7    1
(AC214471) Populus trichocarpa clone POP110-D23, complete se...    46   1.7    1
(AR551144) Sequence 6275 from patent US 6747137.                   46   1.7    1
(EU090070) Avicularia avicularia myosin II regulatory light ...    46   1.7    1
(AC150260) Aedes aegypti, clone XX-129I16, complete sequence.      46   1.7    1
(AC135941) Rattus norvegicus clone CH230-351F9, WORKING DRAF...    46   1.7    1
(AC123166) Rattus norvegicus clone CH230-45E12, *** SEQUENCI...    46   1.7    1
(AC118858) Rattus norvegicus clone CH230-248J11, WORKING DRA...    46   1.7    1
(AC229576) Zea mays chromosome 9 clone ZMMBBb-242F9; ZMMBBb0...    46   1.7    1
(AC215247) Zea mays chromosome 1 clone CH201-223J1; ZMMBBc02...    46   1.7    1
(AC209938) Zea mays chromosome 1 clone CH201-401L1; ZMMBBc04...    46   1.7    1
(AC208683) Zea mays chromosome 1 clone ZMMBBb-166M5; ZMMBBb0...    46   1.7    1
(AC205706) Zea mays chromosome 1 clone CH201-383B21; ZMMBBc0...    46   1.7    1
(AC205620) Zea mays chromosome 9 clone CH201-273F11; ZMMBBc0...    46   1.7    1
(AC197301) Myotis lucifugus clone CH235-379B14, WORKING DRAF...    46   1.7    1
(AC179760) Strongylocentrotus purpuratus clone R3-1016O24, W...    46   1.7    1
(ET943689) CHO_OF050xi16r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.7    1
(DH378450) Oryzias latipes Fosmid clone:GOLWFno777_m07, reve...    46   1.7    1
(CC981463) ZUADF24TV ZM_3.0_4.0_KB Zea mays genomic clone ZM...    46   1.7    1
(CC931075) ZMMBBc0542D05r ZMMBBc Zea mays subsp. mays genomi...    46   1.7    1
(EL431744) CHCS6198.b1_K13.ab1 CHC(LMS) Texas blueweed Helia...    46   1.7    1
(EH633183) EST4290 LK04 Laupala kohalensis cDNA clone 106102...    46   1.7    1
(EH630474) EST1581 LK04 Laupala kohalensis cDNA clone 106102...    46   1.7    1
(EC841578) DPE00005497 Homemade, normalized_dpn Diplonema pa...    46   1.7    1
(DT934843) BAAC-PNP1279D17.g1 C.remanei EST SB146 Caenorhabd...    46   1.7    1
(DT934077) BAAC-PNP1276F21.g1 C.remanei EST SB146 Caenorhabd...    46   1.7    1
(CV005200) nad03-16cs2-a03 Nad03 Nuphar advena cDNA clone na...    46   1.7    1
(CV004551) pam01-16ms2-h10 Pam01 Persea americana cDNA clone...    46   1.7    1
(CO995584) pam01-21ms4-a03 Pam01 Persea americana cDNA clone...    46   1.7    1
(CD482600) atr01-31ms1-e08 Atr01 Amborella trichopoda cDNA c...    46   1.7    1
(FD753485) Afi04_109_H09_C014.g1 Aristolochia fimbriata flow...    46   1.7    1
(EY945492) RS3E852JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    46   1.7    1
(EY931311) RS1DK79TF RS1(AR) Raphanus sativus var. oleiformi...    46   1.7    1
(EY927306) RS1DK79JQ RS1(AR) Raphanus sativus var. oleiformi...    46   1.7    1
(EY902173) RR2DD02JQ RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.7    1
(CI046325) Oryza sativa Japonica Group cDNA, clone: 011-M097...    36   2.1    2
(AP005191) Oryza sativa Japonica Group genomic DNA, chromoso...    44   2.2    2
(AC225341) Zea mays chromosome 8 clone CH201-399D16; ZMMBBc0...    40   2.2    3
(BJ411539) Dictyostelium discoideum cDNA clone:ddv4g22, 5' e...    42   2.3    2
(CI023996) Oryza sativa Japonica Group cDNA, clone: 009-M002...    36   2.3    2
(CI064567) Oryza sativa Japonica Group cDNA, clone: 014-M097...    36   2.4    2
(AL928790) Zebrafish DNA sequence from clone CH211-146N9 in ...    42   2.5    2
(CI238750) Oryza sativa Japonica Group cDNA, clone: 042-M031...    36   2.5    2
(CI237142) Oryza sativa Japonica Group cDNA, clone: 042-M008...    36   2.5    2
(CI045596) Oryza sativa Japonica Group cDNA, clone: 011-M082...    34   2.6    2
(CI207789) Oryza sativa Japonica Group cDNA, clone: 038-M016...    36   2.7    2
(AM055942) Toxoplasma gondii RH, genomic DNA chromosome Ia.        34   2.8    2
(BJ422322) Dictyostelium discoideum cDNA clone:ddv45f14, 5' ...    42   2.9    2
(BJ369639) Dictyostelium discoideum cDNA clone:ddc51b10, 5' ...    42   2.9    2
(BJ421833) Dictyostelium discoideum cDNA clone:ddv44a06, 5' ...    42   3.0    2
(BJ371645) Dictyostelium discoideum cDNA clone:ddc58k22, 5' ...    42   3.0    2
(DV112045) Cm_mx0_76e11_SP6 Green Shore Crab Multiple Tissue...    42   3.0    2
(DV111790) Cm_mx0_73f04_SP6 Green Shore Crab Multiple Tissue...    42   3.0    2
(DV111528) Cm_mx0_70e04_SP6 Green Shore Crab Multiple Tissue...    42   3.0    2
(BJ369638) Dictyostelium discoideum cDNA clone:ddc51b09, 5' ...    42   3.0    2
(EY925984) RS1D131JQ RS1(AR) Raphanus sativus var. oleiformi...    36   3.1    2
(AC115642) Rattus norvegicus clone CH230-204D2, WORKING DRAF...    36   3.2    3
(DB712850) Solanum lycopersicum cDNA, clone: LEFL2012G05, 5'...    36   3.2    3
(CJ482882) Macaca fascicularis mRNA, clone: QtsA-10287, 5' e...    42   3.4    2
(CJ486255) Macaca fascicularis mRNA, clone: QtsA-13872, 5' e...    34   3.5    2
(CJ461416) Macaca fascicularis mRNA, clone: QmoA-14346, 5' e...    34   3.5    2
(BD100239) Novel genes cloned in humanneuroblastoma and frag...    34   3.5    2
(BD020301) Novel gene and novel gene fragment cloned in huma...    34   3.5    2
(AC206573) Zea mays chromosome 8 clone CH201-463G7; ZMMBBc04...    42   3.6    4
(CJ477176) Macaca fascicularis mRNA, clone: QtrA-11962, 5' e...    34   3.7    2
(CJ488429) Macaca fascicularis mRNA, clone: QtsA-16138, 5' e...    34   3.7    2
(CJ443834) Macaca fascicularis mRNA, clone: QccE-21410, 5' e...    34   3.7    2
(EL651625) AGENCOURT_97912483 NIH_ZGC_21 Danio rerio cDNA cl...    42   3.9    2
(CJ435200) Macaca fascicularis mRNA, clone: QccE-12231, 5' e...    38   3.9    2
(CJ457082) Macaca fascicularis mRNA, clone: QflA-22946, 5' e...    30   3.9    3
(AP009880) Lotus japonicus genomic DNA, clone: LjT36L22, TM1...    38   4.0    4
(AL286612) Tetraodon nigroviridis genome survey sequence PUC...    42   4.0    2
(CW924717) EDCB624TR A. castellanii, 6-8 kb library from tot...    36   4.1    2
(AC020260) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   4.1    2
(AM464911) Vitis vinifera contig VV78X218677.4, whole genome...    40   4.3    2
(BH139445) ENTNB58TF Entamoeba histolytica Sheared DNA Entam...    34   4.4    2
(AM537728) Paracentrotus lividus EST, clone MPMGp1171H03112Q...    34   4.4    2
(DR393327) USDA-FP_153259 Adult Alate Aphis gossypii (WHAGA)...    34   4.4    2
(EC990196) WIN1138.C21_N18 Muscat Hamburg pre-veraison berry...    34   4.4    2
(CB974365) CAB30004_Ia_Fa_D10 Cabernet Sauvignon Berry Stage...    32   4.4    2
(EE264626) C03_C03sg1j5_pDNRf_515354 Myzus persicae, tobacco...    34   4.4    2
(DR393882) USDA-FP_153816 Adult Alate Aphis gossypii (WHAGA)...    34   4.4    2
(EE102330) SBB00983 Inflorescence (VvS11) Vitis vinifera cDN...    32   4.4    2
(CF204993) RR890915I0004_IIIa_Ra_E04 Vitis sp. RR890915I Vit...    32   4.4    2
(DW011095) w12l2_M13F Myzus persicae, tobacco lineage, whole...    34   4.4    2
(CV094681) FAMU_USDA_FP_2704 Vitis shuttleworthii L., grape ...    32   4.4    2
(ES224396) MpHnorm_ag5_L22 Myzus persicae, tobacco lineage, ...    34   4.5    2
(DR391646) USDA-FP_151578 Adult Alate Aphis gossypii (WHAGA)...    34   4.5    2
(DR389829) USDA-FP_149649 Adult Alate Aphis gossypii (WHAGA)...    34   4.5    2
(DW011994) w15k15_M13F Myzus persicae, tobacco lineage, whol...    34   4.5    2
(DR392852) USDA-FP_152784 Adult Alate Aphis gossypii (WHAGA)...    34   4.5    2
(EE570590) G09_G09fm3p17_pDNRf_532830 Myzus persicae, line F...    34   4.5    2
(AC177959) Strongylocentrotus purpuratus clone R3-3049E7, WO...    40   4.5    4
(DW012897) w18e23_M13F Myzus persicae, tobacco lineage, whol...    34   4.5    2
(BY907737) Cryptomeria japonica cDNA clone: CMFL034_E10, 3'e...    34   4.5    2
(DR389352) USDA-FP_149172 Adult Alate Aphis gossypii (WHAGA)...    34   4.5    2
(DW362320) MpW-XIV-G11 MpW Myzus persicae cDNA 5', mRNA sequ...    34   4.5    2
(CB931928) ri73a05.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    32   4.5    2
(CB936302) USDA-FP_101808 Adult Alate Brown Citrus Aphid Tox...    34   4.5    2
(BY896993) Cryptomeria japonica cDNA clone: CMFL001_K17, 3'e...    34   4.5    2
(CD450922) USDA-FP_102941 Adult Alate Brown Citrus Aphid Tox...    34   4.6    2
(ES218907) MpGnorm_ag1_I10 Myzus persicae, tobacco lineage, ...    34   4.6    2
(EY307545) CAWX20535.rev CAWX Helobdella robusta Primary Ear...    36   4.7    2
(AC217257) Zea mays chromosome 1 clone ZMMBBb-105G23; ZMMBBb...    40   4.7    3
(AC112685) Mus musculus chromosome 3, clone RP23-340E10, com...    42   6.2    4
(AC094184) Rattus norvegicus clone CH230-2K12, *** SEQUENCIN...    38   6.5    5
(AC121663) Rattus norvegicus clone CH230-387A15, WORKING DRA...    42   6.5    4
(EU552532) Zoarces viviparus sodium bicarbonate cotransporte...    44   6.7    1
(CR760931) Xenopus tropicalis finished cDNA, clone TEgg003h03.     44   6.7    1
(BX890575) Zebrafish DNA sequence from clone CH211-235C4 in ...    44   6.7    1
(BC079968) Xenopus tropicalis dek protein, mRNA (cDNA clone ...    44   6.7    1
(BC072113) Xenopus laevis hypothetical protein MGC79096, mRN...    44   6.7    1
(CT025592) Mouse DNA sequence from clone RP23-431J17 on chro...    44   6.7    1
(BX005190) Mouse DNA sequence from clone RP23-383A22 on chro...    44   6.7    1
(AC159648) Mus musculus BAC clone RP23-38A15 from chromosome...    44   6.7    1
(AC159645) Mus musculus BAC clone RP23-242E11 from chromosom...    44   6.7    1
(AC140407) Mus musculus BAC clone RP23-142K9 from chromosome...    44   6.7    1
(AC122892) Mus musculus BAC clone RP23-66P19 from 8, complet...    44   6.7    1
(AC112791) Mus musculus BAC clone RP23-182O1 from 13, comple...    44   6.7    1
(AC096777) Mus musculus clone RP23-106L19, complete sequence.      44   6.7    1
(AC146578) Pan troglodytes BAC clone CH251-86G3 from Y, comp...    44   6.7    1
(AC146225) Pan troglodytes BAC clone RP43-32E8 from chromoso...    44   6.7    1
(EF216486) Phytophthora nemorosa strain SCRP910 clone I13-14...    44   6.7    1
(EF216485) Phytophthora pseudosyringae strain IMI390500 I13-...    44   6.7    1
(EF216484) Phytophthora psychrophila strain SCRP630 clone I1...    44   6.7    1
(EF216483) Phytophthora ilicis strain SCRP377 clone I13-14(P...    44   6.7    1
(DQ466088) Oryza sativa (japonica cultivar-group) putative s...    44   6.7    1
(CU633876) Podospora anserina genomic DNA chromosome 5, supe...    44   6.7    1
(CT834171) Oryza sativa (indica cultivar-group) cDNA clone:O...    44   6.7    1
(CT834170) Oryza sativa (indica cultivar-group) cDNA clone:O...    44   6.7    1
(CR380952) Candida glabrata strain CBS138 chromosome F compl...    44   6.7    1
(AY096563) Arabidopsis thaliana putative ethylene reponse fa...    44   6.7    1
(AY070443) Arabidopsis thaliana putative ethylene reponse fa...    44   6.7    1
(AY058153) Arabidopsis thaliana At2g31880/F20M17.8 mRNA, com...    44   6.7    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.7    1
(AP007155) Aspergillus oryzae RIB40 genomic DNA, SC003.            44   6.7    1
(AK120401) Oryza sativa Japonica Group cDNA clone:J013088G22...    44   6.7    1
(AF370596) Arabidopsis thaliana putative receptor-like prote...    44   6.7    1
(AE017353) Cryptococcus neoformans var. neoformans JEC21 chr...    44   6.7    1
(AC214998) Populus trichocarpa clone POP066-G22, complete se...    44   6.7    1
(AC189597) Brassica rapa subsp. pekinensis clone KBrH014E13,...    44   6.7    1
(AC006593) Arabidopsis thaliana chromosome 2 clone F16D14 ma...    44   6.7    1
(AC006533) Arabidopsis thaliana chromosome 2 clone F20M17 ma...    44   6.7    1
(AC000107) Genomic sequence for Arabidopsis thaliana BAC F17...    44   6.7    1
(FB879530) Sequence 98803 from Patent WO2008034648.                44   6.7    1
(FB833898) Sequence 53171 from Patent WO2008034648.                44   6.7    1
(FB825097) Sequence 44370 from Patent WO2008034648.                44   6.7    1
(FB822032) Sequence 41305 from Patent WO2008034648.                44   6.7    1
(FB814409) Sequence 33682 from Patent WO2008034648.                44   6.7    1
(EA024414) Sequence 1400 from patent US 7135558.                   44   6.7    1
(EA024413) Sequence 1399 from patent US 7135558.                   44   6.7    1
(DL260324) Protein Regulating  Leaf Longevity of Plant, Gene...    44   6.7    1
(DI141375) Protein Regulating.                                     44   6.7    1
(DD235225) A process for producing plants with delayed flowe...    44   6.7    1
(CS539229) Sequence 41 from Patent WO2006033708.                   44   6.7    1
(CS493219) Sequence 97 from Patent WO2006130156.                   44   6.7    1
(CS137696) Sequence 667 from Patent WO2005047516.                  44   6.7    1
(CQ612882) Sequence 40640 from Patent WO0171042.                   44   6.7    1
(CQ612881) Sequence 40639 from Patent WO0171042.                   44   6.7    1
(CQ606068) Sequence 33826 from Patent WO0171042.                   44   6.7    1
(CQ596918) Sequence 24676 from Patent WO0171042.                   44   6.7    1
(AX651957) Sequence 841 from Patent WO03000898.                    44   6.7    1
(AX651276) Sequence 60 from Patent WO03000898.                     44   6.7    1
(AX589909) Sequence 91 from Patent WO02081695.                     44   6.7    1
(AX506949) Sequence 1644 from Patent WO0216655.                    44   6.7    1
(AX505391) Sequence 86 from Patent WO0216655.                      44   6.7    1
(GM729585) Sequence 6248 from Patent WO2008048614.                 44   6.7    1
(GM725368) Sequence 2031 from Patent WO2008048614.                 44   6.7    1
(AR545017) Sequence 148 from patent US 6747137.                    44   6.7    1
(EU153401) Felis catus FLA extended class II, class II, clas...    44   6.7    1
(L19197) Drosophila melanogaster eIF-2 beta-subunit mRNA, co...    44   6.7    1
(BT046149) Drosophila melanogaster IP21610 full insert cDNA.       44   6.7    1
(AY071253) Drosophila melanogaster RE29270 full length cDNA.       44   6.7    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   6.7    1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    44   6.7    1
(AC091223) Drosophila melanogaster 3L BAC RP98-48G6 (Roswell...    44   6.7    1
(AC010751) Drosophila melanogaster 3L BAC RP98-9A23 (Roswell...    44   6.7    1
(AC010070) Drosophila melanogaster 3L BAC RP98-18E21 (Roswel...    44   6.7    1
(AB090817) Anopheles gambiae retrotransposon R6Ag1 DNA, comp...    44   6.7    1
(AL158801) Human chromosome 14 DNA sequence BAC R-665C16 of ...    44   6.7    1
(AC099670) Homo sapiens chromosome 1 clone RP11-84O12, compl...    44   6.7    1
(AC142238) Rattus norvegicus clone CH230-474C18, WORKING DRA...    44   6.7    1
(AC137940) Mus musculus clone RP24-446J18, WORKING DRAFT SEQ...    44   6.7    1
(AC132734) Rattus norvegicus clone CH230-247J22, WORKING DRA...    44   6.7    1
(AC130137) Rattus norvegicus clone CH230-159H20, *** SEQUENC...    44   6.7    1
(AC111862) Rattus norvegicus clone CH230-207M3, *** SEQUENCI...    44   6.7    1
(AC111362) Rattus norvegicus clone CH230-90C3, WORKING DRAFT...    44   6.7    1
(AC097089) Rattus norvegicus clone CH230-173B12, WORKING DRA...    44   6.7    1
(AC096875) Pan troglodytes clone RP43-120N4, WORKING DRAFT S...    44   6.7    1
(CU606932) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.7    1
(AC079546) Mus musculus clone RP23-407F8, WORKING DRAFT SEQU...    44   6.7    1
(AC074170) Mus musculus clone RP23-64G12, *** SEQUENCING IN ...    44   6.7    1
(CR940353) Theileria annulata genomic DNA chromosome 4.            44   6.7    1
(CR627493) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.7    1
(BX914208) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.7    1
(AP010136) Lotus japonicus genomic DNA, clone: LjT19A14, TM0...    44   6.7    1
(AP009918) Lotus japonicus genomic DNA, clone: LjT35M05, TM2...    44   6.7    1
(AP007831) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.7    1
(AP007757) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.7    1
(AC233440) Solanum tuberosum chromosome 1 clone RH082N18, **...    44   6.7    1
(AC232067) Solanum tuberosum chromosome 1 clone RH088D06, **...    44   6.7    1
(AC221016) Zea mays chromosome 4 clone CH201-151E15; ZMMBBc0...    44   6.7    1
(AC217900) Zea mays chromosome 7 clone CH201-189L22; ZMMBBc0...    44   6.7    1
(AC217104) Zea mays chromosome 7 clone CH201-222B5; ZMMBBc02...    44   6.7    1
(AC216254) Zea mays chromosome 4 clone CH201-3H6; ZMMBBc0003...    44   6.7    1
(AC215912) Zea mays chromosome 7 clone CH201-73L16; ZMMBBc00...    44   6.7    1
(AC213894) Zea mays chromosome 8 clone CH201-156N5; ZMMBBc01...    44   6.7    1
(AC212240) Zea mays chromosome 9 clone CH201-205L17; ZMMBBc0...    44   6.7    1
(AC211501) Zea mays chromosome 1 clone CH201-128P1; ZMMBBc01...    44   6.7    1
(AC211167) Zea mays chromosome 3 clone CH201-50H13; ZMMBBc00...    44   6.7    1
(AC210983) Zea mays chromosome 3 clone CH201-456G7; ZMMBBc04...    44   6.7    1
(AC210944) Zea mays chromosome 8 clone CH201-258D24; ZMMBBc0...    44   6.7    1
(AC210729) Zea mays chromosome 1 clone CH201-319K10; ZMMBBc0...    44   6.7    1
(AC210607) Zea mays chromosome 4 clone CH201-433F16; ZMMBBc0...    44   6.7    1
(AC210410) Zea mays chromosome 3 clone CH201-527F4; ZMMBBc05...    44   6.7    1
(AC210240) Zea mays chromosome 8 clone ZMMBBb-314G2; ZMMBBb0...    44   6.7    1
(AC209632) Zea mays chromosome 7 clone CH201-309P1; ZMMBBc03...    44   6.7    1
(AC208461) Zea mays chromosome 1 clone CH201-429A10; ZMMBBc0...    44   6.7    1
(AC207726) Zea mays chromosome 3 clone CH201-126F19; ZMMBBc0...    44   6.7    1
(AC207722) Zea mays chromosome 7 clone CH201-103K6; ZMMBBc01...    44   6.7    1
(AC207673) Zea mays chromosome 7 clone CH201-466F22; ZMMBBc0...    44   6.7    1
(AC207067) Zea mays chromosome 4 clone CH201-489C12; ZMMBBc0...    44   6.7    1
(AC205066) Zea mays chromosome 2 clone CH201-67I15; ZMMBBc00...    44   6.7    1
(AC203410) Zea mays chromosome 6 clone CH201-287N18; ZMMBBc0...    44   6.7    1
(AC203386) Zea mays chromosome 7 clone CH201-340C20; ZMMBBc0...    44   6.7    1
(AC202091) Zea mays chromosome 10 clone CH201-548I19; ZMMBBc...    44   6.7    1
(AC202085) Zea mays chromosome 2 clone CH201-202L10; ZMMBBc0...    44   6.7    1
(AC201828) Zea mays chromosome 2 clone CH201-166A6; ZMMBBc01...    44   6.7    1
(AC200564) Zea mays chromosome 2 clone CH201-274G22; ZMMBBc0...    44   6.7    1
(AC199637) Zea mays chromosome 8 clone CH201-133C21; ZMMBBc0...    44   6.7    1
(AC199634) Zea mays chromosome 7 clone CH201-138D7; ZMMBBc01...    44   6.7    1
(AC199492) Zea mays chromosome 8 clone CH201-23F2; ZMMBBc002...    44   6.7    1
(AC199196) Zea mays chromosome 8 clone CH201-341M8; ZMMBBc03...    44   6.7    1
(AC198901) Zea mays chromosome 7 clone CH201-126D11; ZMMBBc0...    44   6.7    1
(AC198750) Zea mays chromosome 10 clone CH201-150K14; ZMMBBc...    44   6.7    1
(AC198428) Zea mays chromosome 4 clone CH201-175N22; ZMMBBc0...    44   6.7    1
(AC197680) Zea mays chromosome 2 clone ZMMBBb-331H20; ZMMBBb...    44   6.7    1
(AC197001) Zea mays chromosome 8 clone ZMMBBb-171N12; ZMMBBb...    44   6.7    1
(AC194436) Zea mays chromosome 1 clone CH201-152P11; ZMMBBc0...    44   6.7    1
(AC194077) Zea mays chromosome 6 clone CH201-421E11; ZMMBBc0...    44   6.7    1
(AC191250) Zea mays chromosome unknown clone CH201-110P10; Z...    44   6.7    1
(AC191067) Zea mays chromosome 8 clone CH201-339J16; ZMMBBc0...    44   6.7    1
(AC190977) Zea mays chromosome 1 clone CH201-131O16; ZMMBBc0...    44   6.7    1
(AC190953) Zea mays chromosome 6 clone CH201-479P18; ZMMBBc0...    44   6.7    1
(AC189052) Zea mays chromosome 1 clone ZMMBBb-464M11; ZMMBBb...    44   6.7    1
(AC187820) Zea mays chromosome 8 clone CH201-140C24; ZMMBBc0...    44   6.7    1
(AC185252) Zea mays chromosome 3 clone CH201-490J9; ZMMBBc04...    44   6.7    1
(AC184864) Zea mays chromosome 4 clone CH201-177D4; ZMMBBc01...    44   6.7    1
(AC182625) Zea mays chromosome 3 clone CH201-116P2; ZMMBBc01...    44   6.7    1
(AC181202) Strongylocentrotus purpuratus clone R3-3040K6, WO...    44   6.7    1
(AC180851) Strongylocentrotus purpuratus clone R3-3068A4, WO...    44   6.7    1
(AC176310) Strongylocentrotus purpuratus clone R3-3057B15, W...    44   6.7    1
(AC014936) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   6.7    1
(AC007328) Drosophila melanogaster strain y chromosome 3 clo...    44   6.7    1
(BX819877) Arabidopsis thaliana Full-length cDNA Complete se...    44   6.7    1
(BX819293) Arabidopsis thaliana Full-length cDNA Complete se...    44   6.7    1
(AY068306) Schmidtea mediterranea clone H.50.4d(T3) unknown ...    44   6.7    1
(BH404945) AG-ND-124B7.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH404940) AG-ND-124B7.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH404329) AG-ND-146A19.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH403490) AG-ND-178A17.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH402917) AG-ND-172L22.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH402622) AG-ND-127L8.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH402269) AG-ND-107M16.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH402097) AG-ND-171A21.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH401813) AG-ND-144N15.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH401805) AG-ND-167A17.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH401541) AG-ND-145J9.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH401387) AG-ND-174O9.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH400948) AG-ND-144F22.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH400264) AG-ND-121P1.TR.2 ND-TAM Anopheles gambiae genomic...    44   6.7    1
(BH399711) AG-ND-129N12.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH399689) AG-ND-104O21.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH399603) AG-ND-153L24.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH398930) AG-ND-126G16.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH398359) AG-ND-153L20.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH397972) AG-ND-136A10.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH397929) AG-ND-147O12.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH397788) AG-ND-159P16.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH397775) AG-ND-123N15.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH396473) AG-ND-149F14.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH396339) AG-ND-107M3.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH395841) AG-ND-105I21.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH395783) AG-ND-160P16.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH394906) AG-ND-156J22.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH394517) AG-ND-169H17.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH394363) AG-ND-180M2.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH393963) AG-ND-138J2.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH393870) AG-ND-168L21.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH393729) AG-ND-133E13.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH393630) AG-ND-180D8.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH393289) AG-ND-171G17.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH393019) AG-ND-123C13.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH392170) AG-ND-104O18.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH392014) AG-ND-157A22.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH391708) AG-ND-180D2.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH390811) AG-ND-135M18.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH390789) AG-ND-136I12.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH390634) AG-ND-102B8.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH389189) AG-ND-173B2.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH388985) AG-ND-167A18.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH388832) AG-ND-104K15.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH387507) AG-ND-132E8.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH387422) AG-ND-128G23.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH386880) AG-ND-132B6.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH386770) AG-ND-154K23.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH386080) AG-ND-154K21.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH385397) AG-ND-163J15.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH384510) AG-ND-106H16.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH384033) AG-ND-160A11.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH383422) AG-ND-173G5.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH382463) AG-ND-136A1.TF.1 ND-TAM Anopheles gambiae genomic...    44   6.7    1
(BH381984) AG-ND-176I9.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH381681) AG-ND-135J22.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH379855) AG-ND-131L14.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH379396) AG-ND-116A1.TF.1 ND-TAM Anopheles gambiae genomic...    44   6.7    1
(BH379028) AG-ND-150C20.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH378971) AG-ND-101I23.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH378310) AG-ND-175K3.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH378066) AG-ND-153K1.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH378008) AG-ND-120H10.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH375950) AG-ND-179H6.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH375132) AG-ND-121P1.TR ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH374844) AG-ND-167K5.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH374257) AG-ND-119C18.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH373956) AG-ND-176C7.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH373474) AG-ND-168E19.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH373473) AG-ND-104H16.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH372394) AG-ND-180N14.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH371324) AG-ND-166J20.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH371316) AG-ND-131D17.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH369847) AG-ND-180N6.TF ND-TAM Anopheles gambiae genomic c...    44   6.7    1
(BH369000) AG-ND-151E24.TF ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH368858) AG-ND-172N10.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(BH367584) AG-ND-168I18.TR ND-TAM Anopheles gambiae genomic ...    44   6.7    1
(AZ356289) 1M0097M17F Mouse 10kb plasmid UUGC1M library Mus ...    44   6.7    1
(FI419480) CH322-149H01.x CHORI-322 Drosophila melanogaster ...    44   6.7    1
(FI130122) SGM135 Sugarcane cv. Co7201 microsatellite enrich...    44   6.7    1
(FI130121) SGM134 Sugarcane cv. Co7201 microsatellite enrich...    44   6.7    1
(FI130081) SGM94 Sugarcane cv. Co7201 microsatellite enriche...    44   6.7    1
(ET528551) fcg3x.223150m12.f C. graminicola genomic sequence...    44   6.7    1
(ET506922) fcg2x.pk577.f5 C. graminicola genomic sequence Gl...    44   6.7    1
(ET490900) fcg2x.pk450.f11 C. graminicola genomic sequence G...    44   6.7    1
(ET439576) fcg2x.pk105.h11 C. graminicola genomic sequence G...    44   6.7    1
(EJ774209) 1092983200873 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.7    1
(AL611694) Anopheles gambiae GSS SP6 end of clone 31K09 of l...    44   6.7    1
(AL611058) Anopheles gambiae GSS SP6 end of clone 27L16 of l...    44   6.7    1
(AL609960) Anopheles gambiae GSS T7 end of clone 21H03 of li...    44   6.7    1
(AL609615) Anopheles gambiae GSS SP6 end of clone 19K19 of l...    44   6.7    1
(AL608819) Anopheles gambiae GSS SP6 end of clone 11K22 of l...    44   6.7    1
(EJ752343) 1092963044824 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.7    1
(EJ590729) 1092961048296 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.7    1
(EJ573724) 1092960076131 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.7    1
(EJ036101) 1095454069329 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.7    1
(EJ023055) 1095454009958 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.7    1
(ED543514) ir95c06.b1 Sub-library of 37 pooled maize BAC clo...    44   6.7    1
(ED524015) KBrB112H22F KBrB, Brassica rapa BamHI BAC library...    44   6.7    1
(ED520443) KBrB107J04R KBrB, Brassica rapa BamHI BAC library...    44   6.7    1
(ED511349) KBrB094I16F KBrB, Brassica rapa BamHI BAC library...    44   6.7    1
(DU683013) Bst015549 lambda03 Boechera stricta genomic clone...    44   6.7    1
(AL157250) Anopheles gambiae GSS T7 end of clone 32M21 of No...    44   6.7    1
(AL156827) Anopheles gambiae GSS T7 end of clone 32C06 of No...    44   6.7    1
(AL156397) Anopheles gambiae GSS SP6 end of clone 31F11 of N...    44   6.7    1
(AL156355) Anopheles gambiae GSS T7 end of clone 31E06 of No...    44   6.7    1
(AL156253) Anopheles gambiae GSS SP6 end of clone 31B13 of N...    44   6.7    1
(AL154234) Anopheles gambiae GSS T7 end of clone 27J08 of No...    44   6.7    1
(AL154189) Anopheles gambiae GSS T7 end of clone 27I04 of No...    44   6.7    1
(AL153400) Anopheles gambiae GSS SP6 end of clone 26C10 of N...    44   6.7    1
(AL152174) Anopheles gambiae GSS T7 end of clone 23P02 of No...    44   6.7    1
(AL151826) Anopheles gambiae GSS SP6 end of clone 23E19 of N...    44   6.7    1
(AL151806) Anopheles gambiae GSS T7 end of clone 23E07 of No...    44   6.7    1
(AL151459) Anopheles gambiae GSS T7 end of clone 22K09 of No...    44   6.7    1
(AL150684) Anopheles gambiae GSS T7 end of clone 21F05 of No...    44   6.7    1
(AL150202) Anopheles gambiae GSS SP6 end of clone 20G03 of N...    44   6.7    1
(AL149686) Anopheles gambiae GSS T7 end of clone 19G07 of No...    44   6.7    1
(AL148879) Anopheles gambiae GSS T7 end of clone 17P18 of No...    44   6.7    1

>(AU270950) Dictyostelium discoideum vegetative cDNA clone:VSK291,
           3' end single read.
          Length = 529

 Score =  303 bits (153), Expect(3) = e-142
 Identities = 153/153 (100%)
 Strand = Plus / Plus


Query: 133 tatttgaaagtgatgaagaagaagagcaagaagaagtggaagattatagtgaaaaccacc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tatttgaaagtgatgaagaagaagagcaagaagaagtggaagattatagtgaaaaccacc 60


Query: 193 aacaaaaatcaacttcatcttcattcccaaaattcccttcaaatagtcacaataatgaat 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacaaaaatcaacttcatcttcattcccaaaattcccttcaaatagtcacaataatgaat 120


Query: 253 ataatcaaccaccaccaccagcatacgaattta 285
           |||||||||||||||||||||||||||||||||
Sbjct: 121 ataatcaaccaccaccaccagcatacgaattta 153

 Score =  234 bits (118), Expect(3) = e-142
 Identities = 118/118 (100%)
 Strand = Plus / Plus


Query: 547 ttaatgagcggtggcggtggaggtggcaatatgtcaatgaacttaaatcatacaccatct 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttaatgagcggtggcggtggaggtggcaatatgtcaatgaacttaaatcatacaccatct 470


Query: 607 gataccgataaagcaagtgctgagaaatattctaaatgggtaatcagttcacttcaat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gataccgataaagcaagtgctgagaaatattctaaatgggtaatcagttcacttcaat 528

 Score = 28.2 bits (14), Expect(3) = e-142
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 350 atgaagctttaatt 363
           ||||||||||||||
Sbjct: 214 atgaagctttaatt 227

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 476,004,374
Number of extensions: 40428441
Number of successful extensions: 5065413
Number of sequences better than 10.0: 969
Length of query: 664
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 640
Effective length of database: 99,340,224,878
Effective search space: 63577743921920
Effective search space used: 63577743921920
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.11
Homology vs Protein 
Query= Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Contig-U00425-1Q.Seq.d
         (664 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30160(T30160)hypothetical protein C37A2.2 - Caenorhabditis eleg...    28   4.1
AC116960_55(AC116960|pid:none) Dictyostelium discoideum chromoso...    30   5.4
AB087836_1(AB087836|pid:none) Pisum sativum HRGP-3 mRNA for hydr...    33   5.7
CU633901_84(CU633901|pid:none) Podospora anserina genomic DNA ch...    33   5.7
AB061242_1(AB061242|pid:none) Solanum tuberosum StHRGP mRNA for ...    33   5.7
AC117080_22(AC117080|pid:none) Dictyostelium discoideum chromoso...    33   5.8
D86853_1(D86853|pid:none) Catharanthus roseus cyc15 mRNA for ext...    33   7.5
AC115598_3(AC115598|pid:none) Dictyostelium discoideum chromosom...    33   9.8

>T30160(T30160)hypothetical protein C37A2.2 - Caenorhabditis elegans
          Length = 1234

 Score = 27.7 bits (60), Expect(2) = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 258  QPPPPAYEFKQSPPQQHKQVXXXXXSQ 338
            QPPPP+   +Q+ P QH+Q+     +Q
Sbjct: 1105 QPPPPSQIQQQNMPMQHQQMQQHPNAQ 1131

 Score = 25.0 bits (53), Expect(2) = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 328  QHHNS--HDNEALIKYQQQVAQQNLTIQKQKHQ 420
            QHH    H  E ++ + QQ  QQ L  Q+Q HQ
Sbjct: 1160 QHHQQQQHHEEMMMMHHQQ--QQQLQQQQQMHQ 1190

Lambda     K      H
   0.316    0.126    0.379

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 555,810,295
Number of extensions: 5994015
Number of successful extensions: 25194
Number of sequences better than 10.0: 8
Number of HSP's gapped: 24623
Number of HSP's successfully gapped: 10
Length of query: 221
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 97
Effective length of database: 649,847,548
Effective search space: 63035212156
Effective search space used: 63035212156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.93  gvh: 0.49  alm: 0.34  top: 0.87  tms: 0.00  mit: 0.41  mip: 0.15
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for Contig-U00425-1 is mit
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0