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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10556-1
Contig ID Contig-U10556-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10556-1 (Contig-U10556-1Q) /CSM_Contig/Contig-U10556-1Q.Seq.d
ATACAATCAAGATCAACAGGTGATAAAAAGTTTTATCAAGCATATAATAA
TGGATATACAGATGATCGTTTAGAATCAATGTTAAAACAAATTAAATCAT
TACGTGATTGTGATCAACCATGGATTGTAAATGGTATTTTAAGACCATAT
AAACATTTTAATGAAACACTTACATCATCATCATCACAACAACATATTTT
ACCAACAATTCATTTCCCTGAGGATGAAAAATTAGAATATCCAAATAATT
TAAATAAACCATTATTTAGAGTACTTAGTAATGATAATAATAATTCAGTT
GAAAGATATATTGTAGAAGATTATATAATTGATATTTTATCATTCTTCAA
TTCAGATCATAAAGAATGTTCAAAGTTTATTTATTCATTACCAGTTGAAA
ATGAAATCGATGATATTGTAGTAGAGACAATATTGGGTGAAATGTTTATG
TTACCAGAACCAACTTTTAAACCAATTTACTATAGTGTTTTATTTGTTGA
TTTCTTTAAATCTCAACCATCAGTTATTCCAGTATTTGCATATGCAATCA
ATTTATTATTTGAAAATATTCATAAATTAGATTTTGAAGTTATGGATCGT
TTCGCTTNNNNNNNNN
Gap no gap
Contig length 616
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3658681
End point 3658132
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U10556
List of clone(s) 

est1=VFO685F,1,607
Translated Amino Acid sequence 
IQSRSTGDKKFYQAYNNGYTDDRLESMLKQIKSLRDCDQPWIVNGILRPYKHFNETLTSS
SSQQHILPTIHFPEDEKLEYPNNLNKPLFRVLSNDNNNSVERYIVEDYIIDILSFFNSDH
KECSKFIYSLPVENEIDDIVVETILGEMFMLPEPTFKPIYYSVLFVDFFKSQPSVIPVFA
YAINLLFENIHKLDFEVMDRFAXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
IQSRSTGDKKFYQAYNNGYTDDRLESMLKQIKSLRDCDQPWIVNGILRPYKHFNETLTSS
SSQQHILPTIHFPEDEKLEYPNNLNKPLFRVLSNDNNNSVERYIVEDYIIDILSFFNSDH
KECSKFIYSLPVENEIDDIVVETILGEMFMLPEPTFKPIYYSVLFVDFFKSQPSVIPVFA
YAINLLFENIHKLDFEVMDRFAXXX


Frame B:
ynqdqqviksfikhiimdiqmiv*nqc*nklnhyvivinhgl*mvf*dhinilmkhlhhh
hhnnifyqqfislrmkn*niqii*inhyleylvmiiiiqlkdil*kii*lifyhssiqii
knvqslfihyqlkmksmil**rqywvkclcyqnqllnqftivfyllislnlnhqlfqylh
mqsiyylkifin*ilklwivslxxx


Frame C:
tikinr**kvlssi**wiyr*sfrinvktn*iit*l*stmdckwyfkti*tf**ntyiii
itttyftnnsfp*g*kirisk*fk*tii*st******fs*kiycrrlyn*yfiilqfrs*
rmfkvylfits*k*nr*ycsrdnig*nvyvtrtnf*tnll*cfic*fl*istisyssici
cnqfii*kys*irf*sygsfrxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10556-1 (Contig-U10556-1Q)
/CSM_Contig/Contig-U10556-1Q.Seq.d
         (616 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10556-1 (Contig-U10556-1Q) /CSM_Contig/Conti...  1203  0.0
Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U10219-1 (Contig-U10219-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14289-1 (Contig-U14289-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U01974-1 (Contig-U01974-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11525-1 (Contig-U11525-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U10752-1 (Contig-U10752-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U10246-1 (Contig-U10246-1Q) /CSM_Contig/Conti...    38  0.011

>Contig-U10556-1 (Contig-U10556-1Q) /CSM_Contig/Contig-U10556-1Q.Seq.d
          Length = 616

 Score = 1203 bits (607), Expect = 0.0
 Identities = 607/607 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaatcaagatcaacaggtgataaaaagttttatcaagcatataataatggatataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atacaatcaagatcaacaggtgataaaaagttttatcaagcatataataatggatataca 60

                                                                       
Query: 61  gatgatcgtttagaatcaatgttaaaacaaattaaatcattacgtgattgtgatcaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatgatcgtttagaatcaatgttaaaacaaattaaatcattacgtgattgtgatcaacca 120

                                                                       
Query: 121 tggattgtaaatggtattttaagaccatataaacattttaatgaaacacttacatcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggattgtaaatggtattttaagaccatataaacattttaatgaaacacttacatcatca 180

                                                                       
Query: 181 tcatcacaacaacatattttaccaacaattcatttccctgaggatgaaaaattagaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatcacaacaacatattttaccaacaattcatttccctgaggatgaaaaattagaatat 240

                                                                       
Query: 241 ccaaataatttaaataaaccattatttagagtacttagtaatgataataataattcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaaataatttaaataaaccattatttagagtacttagtaatgataataataattcagtt 300

                                                                       
Query: 301 gaaagatatattgtagaagattatataattgatattttatcattcttcaattcagatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaagatatattgtagaagattatataattgatattttatcattcttcaattcagatcat 360

                                                                       
Query: 361 aaagaatgttcaaagtttatttattcattaccagttgaaaatgaaatcgatgatattgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaagaatgttcaaagtttatttattcattaccagttgaaaatgaaatcgatgatattgta 420

                                                                       
Query: 421 gtagagacaatattgggtgaaatgtttatgttaccagaaccaacttttaaaccaatttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtagagacaatattgggtgaaatgtttatgttaccagaaccaacttttaaaccaatttac 480

                                                                       
Query: 481 tatagtgttttatttgttgatttctttaaatctcaaccatcagttattccagtatttgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatagtgttttatttgttgatttctttaaatctcaaccatcagttattccagtatttgca 540

                                                                       
Query: 541 tatgcaatcaatttattatttgaaaatattcataaattagattttgaagttatggatcgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatgcaatcaatttattatttgaaaatattcataaattagattttgaagttatggatcgt 600

                  
Query: 601 ttcgctt 607
           |||||||
Sbjct: 601 ttcgctt 607


>Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Contig-U12480-1Q.Seq.d
          Length = 1160

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 173  catcatcatcatcacaacaaca 194
            ||||||||||||||||||||||
Sbjct: 1074 catcatcatcatcacaacaaca 1095


>Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Contig-U11936-1Q.Seq.d
          Length = 2453

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 173  catcatcatcatcacaacaaca 194
            ||||||||||||||||||||||
Sbjct: 1034 catcatcatcatcacaacaaca 1055


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,175
Number of Sequences: 6905
Number of extensions: 27175
Number of successful extensions: 3937
Number of sequences better than 10.0: 636
length of query: 616
length of database: 5,674,871
effective HSP length: 16
effective length of query: 600
effective length of database: 5,564,391
effective search space: 3338634600
effective search space used: 3338634600
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.20
Homology vs DNA 
Query= Contig-U10556-1 (Contig-U10556-1Q) /CSM_Contig/Contig-U10556-1Q.Seq.d
         (616 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ417513) Dictyostelium discoideum cDNA clone:ddv30i22, 5' ...  1203   0.0    1
(AC018733) Homo sapiens BAC clone RP11-337H6 from 2, complet...    46   1e-04  4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   4e-04  14
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.007  11
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    34   0.009  10
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.011  10
(BX000353) Zebrafish DNA sequence from clone DKEY-147H15.          34   0.014  8
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.035  12
(AC184216) Strongylocentrotus purpuratus clone R3-8G11, WORK...    42   0.035  3
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    34   0.037  11
(CR396581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.050  8
(CU463283) Zebrafish DNA sequence from clone CH211-226M13.         36   0.054  6
(CX675704) UCRCS08_64B09_b Parent Washington Navel Orange Ca...    38   0.059  3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   0.060  10
(AZ545209) ENTGE49TR Entamoeba histolytica Sheared DNA Entam...    40   0.060  2
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    34   0.066  10
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.074  18
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    38   0.090  9
(AC215420) Solanum lycopersicum chromosome 2 clone C02HBa020...    38   0.094  5
(CT789382) Paramecium tetraurelia 5-PRIME EST from clone LK0...    50   0.095  1
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    30   0.096  11
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.099  11
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   0.11   9
(AE001375) Plasmodium falciparum 3D7 chromosome 2 section 12...    40   0.12   3
(AC176150) Strongylocentrotus purpuratus clone R3-3019I21, W...    40   0.13   6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.14   13
(AC180041) Strongylocentrotus purpuratus clone R3-24A22, WOR...    40   0.14   6
(AC184343) Strongylocentrotus purpuratus clone R3-45D20, WOR...    46   0.16   6
(AC180692) Strongylocentrotus purpuratus clone R3-3087B11, W...    36   0.16   5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.17   10
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    42   0.18   7
(CT572996) Mouse DNA sequence from clone RP23-13C8 on chromo...    38   0.19   3
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.20   9
(CU694913) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.21   6
(AE002124) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    38   0.24   4
(AC189673) Trichinella spiralis BAC clone TS195-25H12 from c...    34   0.28   6
(CR391937) Zebrafish DNA sequence from clone CH211-175G6 in ...    34   0.28   7
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    32   0.29   9
(CT737391) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.29   6
(AC174123) Strongylocentrotus purpuratus clone R3-3028O24, W...    44   0.29   5
(AL929310) Zebrafish DNA sequence from clone CH211-55A7.           34   0.31   5
(BX511256) Zebrafish DNA sequence from clone DKEY-58M10 in l...    34   0.33   7
(AC177030) Strongylocentrotus purpuratus clone R3-1038H08, W...    44   0.34   7
(AC180070) Strongylocentrotus purpuratus clone R3-3029O13, W...    34   0.34   6
(AY871853) Synthetic construct hypothetical protein (FTT0426...    40   0.36   2
(CS448327) Sequence 11 from Patent WO2006117381.                   48   0.37   1
(AC221906) Bos taurus clone CH240-378O24, WORKING DRAFT SEQU...    48   0.37   1
(AC171425) Bos taurus clone CH240-271L18, WORKING DRAFT SEQU...    48   0.37   1
(AC170462) Bos taurus clone CH240-260A16, WORKING DRAFT SEQU...    48   0.37   1
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.38   10
(AC180509) Strongylocentrotus purpuratus clone R3-30A19, WOR...    44   0.40   3
(AC168538) Strongylocentrotus purpuratus clone R3-3091M14, W...    34   0.41   7
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.43   10
(AC174870) Strongylocentrotus purpuratus clone R3-3112M23, W...    40   0.43   6
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    30   0.46   11
(CU468345) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.47   6
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   0.48   8
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    32   0.51   9
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.52   7
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.52   9
(AC148937) Pan troglodytes BAC clone CH251-485I7 from Y, com...    38   0.52   5
(CR932061) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.57   7
(AC069093) Homo sapiens chromosome 2 clone RP11-600D4 map 2,...    40   0.61   4
(AC161017) Pan troglodytes chromosome Y clone CH251-157N1, W...    38   0.62   3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    44   0.66   9
(AC168252) Strongylocentrotus purpuratus clone R3-1001I14, W...    38   0.67   6
(AC178009) Strongylocentrotus purpuratus clone R3-3052N03, W...    32   0.67   8
(EB955583) 9722123 ZF35 Danio rerio cDNA clone 3428172, mRNA...    38   0.68   2
(AC023108) Homo sapiens BAC clone RP11-121I13 from 2, comple...    34   0.69   8
(AC004157) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.70   7
(EY388958) CAXA7587.rev CAXA Helobdella robusta Subtracted L...    36   0.71   2
(EA696234) Sequence 75113 from patent US 7365185.                  42   0.73   4
(AC180292) Strongylocentrotus purpuratus clone R3-3123E16, W...    34   0.79   2
(AC184475) Strongylocentrotus purpuratus clone R3-1026L19, W...    34   0.80   2
(AC126574) Rattus norvegicus clone CH230-141A5, *** SEQUENCI...    44   0.82   5
(DX399827) GH__Sa0030E08.b1 Gossypium herbaceum WGS library ...    38   0.83   2
(AC147434) Medicago truncatula clone mth2-28h7, complete seq...    40   0.88   4
(AC223652) Bos taurus clone CH240-462O1, WORKING DRAFT SEQUE...    36   0.89   6
(DX864614) ZMMBLi0003J01.f ZMMBLi Zea mays genomic clone ZMM...    32   0.90   3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   0.90   8
(BH323840) CH230-53L14.TV CHORI-230 Segment 1 Rattus norvegi...    32   0.91   3
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    30   0.92   11
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743...    32   0.94   4
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255...    38   0.97   5
(CU862072) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.99   6
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    38   0.99   8
(AF045453) Dictyostelium discoideum protein kinase YakA (yak...    42   1.0    2
(AP006452) Oryza sativa Japonica Group genomic DNA, chromoso...    38   1.0    6
(ER595331) 1093016219588 Global-Ocean-Sampling_GS-36-01-01-2...    36   1.0    2
(AF310887) Dictyostelium discoideum RacB (racB) gene, partia...    44   1.1    2
(CU582959) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.1    5
(CG179657) PUFWS24TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    32   1.1    3
(AL161590) Arabidopsis thaliana DNA chromosome 4, contig fra...    38   1.1    9
(CT573438) Pan troglodytes chromosome X clone RP43-057M01 ma...    34   1.1    5
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   1.1    9
(AP001700) Homo sapiens genomic DNA, chromosome 21q, section...    38   1.1    5
(AM479553) Vitis vinifera contig VV78X082322.23, whole genom...    36   1.2    4
(AC178354) Strongylocentrotus purpuratus clone R3-3105K15, W...    34   1.2    7
(AC214418) Populus trichocarpa clone POP106-D21, complete se...    36   1.2    4
(AL844887) Zebrafish DNA sequence from clone DKEY-66C10.           42   1.2    7

>(BJ417513) Dictyostelium discoideum cDNA clone:ddv30i22, 5' end,
           single read.
          Length = 607

 Score = 1203 bits (607), Expect = 0.0
 Identities = 607/607 (100%)
 Strand = Plus / Plus


Query: 1   atacaatcaagatcaacaggtgataaaaagttttatcaagcatataataatggatataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atacaatcaagatcaacaggtgataaaaagttttatcaagcatataataatggatataca 60


Query: 61  gatgatcgtttagaatcaatgttaaaacaaattaaatcattacgtgattgtgatcaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatgatcgtttagaatcaatgttaaaacaaattaaatcattacgtgattgtgatcaacca 120


Query: 121 tggattgtaaatggtattttaagaccatataaacattttaatgaaacacttacatcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggattgtaaatggtattttaagaccatataaacattttaatgaaacacttacatcatca 180


Query: 181 tcatcacaacaacatattttaccaacaattcatttccctgaggatgaaaaattagaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatcacaacaacatattttaccaacaattcatttccctgaggatgaaaaattagaatat 240


Query: 241 ccaaataatttaaataaaccattatttagagtacttagtaatgataataataattcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaaataatttaaataaaccattatttagagtacttagtaatgataataataattcagtt 300


Query: 301 gaaagatatattgtagaagattatataattgatattttatcattcttcaattcagatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaagatatattgtagaagattatataattgatattttatcattcttcaattcagatcat 360


Query: 361 aaagaatgttcaaagtttatttattcattaccagttgaaaatgaaatcgatgatattgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaagaatgttcaaagtttatttattcattaccagttgaaaatgaaatcgatgatattgta 420


Query: 421 gtagagacaatattgggtgaaatgtttatgttaccagaaccaacttttaaaccaatttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtagagacaatattgggtgaaatgtttatgttaccagaaccaacttttaaaccaatttac 480


Query: 481 tatagtgttttatttgttgatttctttaaatctcaaccatcagttattccagtatttgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatagtgttttatttgttgatttctttaaatctcaaccatcagttattccagtatttgca 540


Query: 541 tatgcaatcaatttattatttgaaaatattcataaattagattttgaagttatggatcgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatgcaatcaatttattatttgaaaatattcataaattagattttgaagttatggatcgt 600


Query: 601 ttcgctt 607
           |||||||
Sbjct: 601 ttcgctt 607

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 891,720,523
Number of extensions: 63710906
Number of successful extensions: 6675750
Number of sequences better than 10.0: 520
Length of query: 616
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 593
Effective length of database: 93,106,754,628
Effective search space: 55212305494404
Effective search space used: 55212305494404
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10556-1 (Contig-U10556-1Q) /CSM_Contig/Contig-U10556-1Q.Seq.d
         (616 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY017415_1(AY017415|pid:none) Oryza sativa subsp. japonica nucle...    97   3e-19
AC149131_8(AC149131|pid:none) Medicago truncatula chromosome 7 c...    97   4e-19
FJ664251_1(FJ664251|pid:none) Solanum tuberosum cultivar Desiree...    97   4e-19
FJ664253_1(FJ664253|pid:none) Solanum tuberosum cultivar Desiree...    97   4e-19
AY064960_1(AY064960|pid:none) Arabidopsis thaliana At2g13540/T10...    92   9e-18
AJ238970_1(AJ238970|pid:none) Drosophila melanogaster mRNA for c...    80   4e-14
(Q6GQ80) RecName: Full=Nuclear cap-binding protein subunit 1-A; ...    74   3e-12
(Q56A27) RecName: Full=Nuclear cap-binding protein subunit 1;  &...    73   6e-12
AK134334_1(AK134334|pid:none) Mus musculus 13 days embryo male t...    73   6e-12
AE014297_3125(AE014297|pid:none) Drosophila melanogaster chromos...    73   7e-12
BT058812_1(BT058812|pid:none) Salmo salar clone ssal-rgf-504-292...    72   1e-11
AK166458_1(AK166458|pid:none) Mus musculus mammary gland RCB-052...    72   1e-11
AB179075_1(AB179075|pid:none) Macaca fascicularis testis cDNA cl...    72   1e-11
CR382127_406(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    61   2e-08
CP000587_151(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...    60   6e-08
AM442712_1(AM442712|pid:none) Vitis vinifera contig VV78X087547....    60   6e-08
AL451015_8(AL451015|pid:none) Neurospora crassa DNA linkage grou...    56   7e-07
CP000496_917(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    53   6e-06
CR382138_562(CR382138|pid:none) Debaryomyces hansenii strain CBS...    53   8e-06
GN107564_1(GN107564|pid:none) Sequence 12345 from Patent WO20090...    52   1e-05
(O14253) RecName: Full=Nuclear cap-binding protein subunit 1;  &...    52   1e-05
(P34160) RecName: Full=Nuclear cap-binding protein complex subun...    49   9e-05
Z49273_7(Z49273|pid:none) S.cerevisiae chromosome XIII cosmid 85...    49   9e-05
(Q754H6) RecName: Full=Nuclear cap-binding protein complex subun...    48   3e-04
CU928169_378(CU928169|pid:none) Kluyveromyces thermotolerans str...    48   3e-04
CU928173_376(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    47   4e-04
AL031766_1(AL031766|pid:none) Drosophila melanogaster cosmid 84H4.     46   0.001
GN107570_1(GN107570|pid:none) Sequence 12351 from Patent WO20090...    46   0.001
GN107556_1(GN107556|pid:none) Sequence 12337 from Patent WO20090...    45   0.001
CR380957_157(CR380957|pid:none) Candida glabrata strain CBS138 c...    45   0.002
GN107568_1(GN107568|pid:none) Sequence 12349 from Patent WO20090...    45   0.002
AE017342_50(AE017342|pid:none) Cryptococcus neoformans var. neof...    45   0.002
GN107566_1(GN107566|pid:none) Sequence 12347 from Patent WO20090...    45   0.002
AP007164_21(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...    44   0.003
FN317370_1(FN317370|pid:none) Schistosoma japonicum isolate Anhu...    44   0.005
FN357359_39(FN357359|pid:none) Schistosoma mansoni genome sequen...    43   0.008
FN357359_38(FN357359|pid:none) Schistosoma mansoni genome sequen...    43   0.008
AJ312243_1(AJ312243|pid:none) Fusarium graminearum chs1 gene for...    39   0.15
AY572421_1(AY572421|pid:none) Fusarium oxysporum f. sp. lycopers...    39   0.15
CP001034_2473(CP001034|pid:none) Natranaerobius thermophilus JW/...    38   0.26
CP000123_804(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    34   2.9
Y12736_3(Y12736|pid:none) Lactococcus lactis subsp. cremoris pla...    34   3.8
AF250284_170(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    33   4.9
(Q54NH7) RecName: Full=Putative uncharacterized transmembrane pr...    33   4.9
AM910988_219(AM910988|pid:none) Plasmodium knowlesi strain H chr...    33   4.9
CP001519_16(CP001519|pid:none) Borrelia sp. SV1 plasmid SV1_lp17...    33   4.9
(P54696) RecName: Full=Myosin-H heavy chain; AltName: Full=Myosi...    33   4.9
FM178379_1326(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...    33   4.9
CP000049_641(CP000049|pid:none) Borrelia turicatae 91E135, compl...    33   6.5
AL844509_138(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   8.4
FN360471_1(FN360471|pid:none) Schistosoma mansoni genome sequenc...    33   8.4
FN392319_135(FN392319|pid:none) Pichia pastoris GS115 chromosome...    33   8.4
AY814391_1(AY814391|pid:none) Schistosoma japonicum SJCHGC05532 ...    33   8.4

>AY017415_1(AY017415|pid:none) Oryza sativa subsp. japonica nuclear
           cap-binding protein CBP80 mRNA, complete cds.
           &GN107580_1(GN107580|pid:none)
          Length = 910

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 17/202 (8%)
 Frame = +1

Query: 46  NNGYTDDRLESMLKQIKSLRDCDQPWIVNGILRPYKHFNETLTSSSSQQ-------HILP 204
           N+    D +E + ++I+ L      W V  + +P+  F   L +  S +       H+L
Sbjct: 209 NSPNKKDFIEDLWERIQVLSR--NGWKVKSVPKPHLSFEAQLVAGVSHRFSPISCPHLLS 266

Query: 205 TIHFPEDEK--------LEYPNNLNK-PLFRVLSNDNNNSVERYIVEDYIIDILSFFNSD 357
                E  K        L+YP  L +  +F     +N   V+R++VE+ I+D+L FFN
Sbjct: 267 RNASSEIVKGQEKHEADLKYPQRLRRLHIFPTNKAENMQPVDRFVVEECILDVLLFFNGC 326

Query: 358 HKECSKFIYSLPVENEIDDIVVETILGEMFMLPEPTFKPIYYSVLFVDFFKSQPSVIP-V 534
            KEC+ ++ SLPV    + ++ ETI  ++ +LP P F+PIYY+++ +D  K+ P   P V
Sbjct: 327 RKECAFYLVSLPVPFRYEYLMAETIFSQLLLLPNPPFRPIYYTLVIIDLCKALPGAFPSV 386

Query: 535 FAYAINLLFENIHKLDFEVMDR 600
              A++ LF+ I  +D E   R
Sbjct: 387 VVGAVHALFDRISNMDMECRTR 408

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 831,089,176
Number of extensions: 16489748
Number of successful extensions: 42218
Number of sequences better than 10.0: 53
Number of HSP's gapped: 42125
Number of HSP's successfully gapped: 53
Length of query: 205
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 83
Effective length of database: 650,044,009
Effective search space: 53953652747
Effective search space used: 53953652747
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.66  gvh: 0.21  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U10556-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0