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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10553-1
Contig ID Contig-U10553-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10553-1 (Contig-U10553-1Q) /CSM_Contig/Contig-U10553-1Q.Seq.d
TTGATCCTAATGGAAATATGTATTCTTCATTTGTTGTTTATATCAATTAC
ACTGAAACATTAAATAAATATGAACAACCCCCAATTACTGTATACTCTAG
TGCTTTTTCGGTAATGGTAAATGCAACTACAAAACCATTTATAATTTATA
TTATGGAATTTGATATGAGTGGAAATCTAATTTCCATTTCAAACAAATTT
ACAGTTGTACCAAAAATTTTCAATATATCATATGATTTACCTCCAACACC
CACACCAACAACTCCATTACCAACAAATCCACCACAATTATGTTTTGGTG
AACCAATTTGTGGTGGTAAAAATCAAGGTTATTGTTTAACAAATGTTGGA
TGTGTTTGCTATTCACCTTGGATTGGTAATGATTGTAGTCACAAGTAATC
ATAATTCCACAACCAAAACCAAATCCAAATGACCCAACCACTGAAATTAT
AATAACACCAAATTCAACATCAACATCAAATATTCAAGATTATTCATTTA
AATCAATTGTTTCATTGATTGGAATTAGAGAAATTGATTTTAATTCANNN
NNNNNN
Gap no gap
Contig length 556
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4980310
End point 4979763
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U10553
List of clone(s) 

est1=VFO541F,1,547
Translated Amino Acid sequence 
DPNGNMYSSFVVYINYTETLNKYEQPPITVYSSAFSVMVNATTKPFIIYIMEFDMSGNLI
SISNKFTVVPKIFNISYDLPPTPTPTTPLPTNPPQLCFGEPICGGKNQGYCLTNVGCVCY
SPWIGNDCSHK*s*fhnqnqiqmtqplkl**hqiqhqhqifkiihlnqlfh*leleklil
ixxx
Translated Amino Acid sequence (All Frames) 
Frame A:
lilmeicilhllfisitlkh*inmnnpqllytlvlfr*w*mqlqnhl*filwnli*vei*
fpfqtnlqlyqkfsiyhmiylqhphqqlhyqqihhnyvlvnqfvvvkikviv*qmldvfa
ihlglvmivvtsnhnsttktksk*pnh*nynntkfninikysrlfi*incfidwn*rn*f
*fxxx


Frame B:
*s*wkyvfficclyqlh*nik*i*ttpnycil*cffgngkcnyktiynlyygi*yewksn
fhfkqiysctknfqyii*ftsnthtnnsitnksttimfw*tnlww*ksrllfnkcwmcll
ftldw**l*sqviiipqpkpnpndptteiiitpnststsniqdysfksivsligireidf
nsxxx


Frame C:
DPNGNMYSSFVVYINYTETLNKYEQPPITVYSSAFSVMVNATTKPFIIYIMEFDMSGNLI
SISNKFTVVPKIFNISYDLPPTPTPTTPLPTNPPQLCFGEPICGGKNQGYCLTNVGCVCY
SPWIGNDCSHK*s*fhnqnqiqmtqplkl**hqiqhqhqifkiihlnqlfh*leleklil
ixxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10553-1 (Contig-U10553-1Q)
/CSM_Contig/Contig-U10553-1Q.Seq.d
         (556 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10553-1 (Contig-U10553-1Q) /CSM_Contig/Conti...  1084  0.0
Contig-U12247-1 (Contig-U12247-1Q) /CSM_Contig/Conti...    62  7e-10
Contig-U09791-1 (Contig-U09791-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14766-1 (Contig-U14766-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U13872-1 (Contig-U13872-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U11392-1 (Contig-U11392-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U11371-1 (Contig-U11371-1Q) /CSM_Contig/Conti...    36  0.039

>Contig-U10553-1 (Contig-U10553-1Q) /CSM_Contig/Contig-U10553-1Q.Seq.d
          Length = 556

 Score = 1084 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatcctaatggaaatatgtattcttcatttgttgtttatatcaattacactgaaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttgatcctaatggaaatatgtattcttcatttgttgtttatatcaattacactgaaacat 60

                                                                       
Query: 61  taaataaatatgaacaacccccaattactgtatactctagtgctttttcggtaatggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaataaatatgaacaacccccaattactgtatactctagtgctttttcggtaatggtaa 120

                                                                       
Query: 121 atgcaactacaaaaccatttataatttatattatggaatttgatatgagtggaaatctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcaactacaaaaccatttataatttatattatggaatttgatatgagtggaaatctaa 180

                                                                       
Query: 181 tttccatttcaaacaaatttacagttgtaccaaaaattttcaatatatcatatgatttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttccatttcaaacaaatttacagttgtaccaaaaattttcaatatatcatatgatttac 240

                                                                       
Query: 241 ctccaacacccacaccaacaactccattaccaacaaatccaccacaattatgttttggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctccaacacccacaccaacaactccattaccaacaaatccaccacaattatgttttggtg 300

                                                                       
Query: 301 aaccaatttgtggtggtaaaaatcaaggttattgtttaacaaatgttggatgtgtttgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaccaatttgtggtggtaaaaatcaaggttattgtttaacaaatgttggatgtgtttgct 360

                                                                       
Query: 361 attcaccttggattggtaatgattgtagtcacaagtaatcataattccacaaccaaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attcaccttggattggtaatgattgtagtcacaagtaatcataattccacaaccaaaacc 420

                                                                       
Query: 421 aaatccaaatgacccaaccactgaaattataataacaccaaattcaacatcaacatcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaatccaaatgacccaaccactgaaattataataacaccaaattcaacatcaacatcaaa 480

                                                                       
Query: 481 tattcaagattattcatttaaatcaattgtttcattgattggaattagagaaattgattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattcaagattattcatttaaatcaattgtttcattgattggaattagagaaattgattt 540

                  
Query: 541 taattca 547
           |||||||
Sbjct: 541 taattca 547


>Contig-U12247-1 (Contig-U12247-1Q) /CSM_Contig/Contig-U12247-1Q.Seq.d
          Length = 1330

 Score = 61.9 bits (31), Expect = 7e-10
 Identities = 121/149 (81%), Gaps = 4/149 (2%)
 Strand = Plus / Plus

                                                                       
Query: 268 taccaacaaatccaccacaattatgttttggtgaaccaatttgtggtggtaaaaatcaag 327
           ||||||| |||  |||||||  |||||| ||||||||| | ||||||||   ||| ||||
Sbjct: 110 taccaacgaataaaccacaaacatgtttaggtgaaccagtatgtggtggatcaaaacaag 169

                                                                       
Query: 328 gttattgtttaacaaatgttggatgtgtttgctattcaccttggattggtaatgattgt- 386
           ||| ||||| | ||| ||   ||||| |||| ||| ||||||||||||||||||||||| 
Sbjct: 170 gtttttgttcatcaagtg---gatgtatttgttatccaccttggattggtaatgattgta 226

                                        
Query: 387 agtcacaagtaatcataattccacaacca 415
           | |||||||| || || || |||||||||
Sbjct: 227 attcacaagttataattataccacaacca 255


>Contig-U09791-1 (Contig-U09791-1Q) /CSM_Contig/Contig-U09791-1Q.Seq.d
          Length = 1298

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 264 ccattaccaacaaatccacc 283
           ||||||||||||||||||||
Sbjct: 224 ccattaccaacaaatccacc 243


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,889
Number of Sequences: 6905
Number of extensions: 11889
Number of successful extensions: 1492
Number of sequences better than 10.0: 484
length of query: 556
length of database: 5,674,871
effective HSP length: 16
effective length of query: 540
effective length of database: 5,564,391
effective search space: 3004771140
effective search space used: 3004771140
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.20
Homology vs DNA 
Query= Contig-U10553-1 (Contig-U10553-1Q) /CSM_Contig/Contig-U10553-1Q.Seq.d
         (556 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ417327) Dictyostelium discoideum cDNA clone:ddv30a11, 5' ...  1084   0.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    66   6e-08  13
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    48   4e-07  8
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    40   1e-06  3
(AU073788) Dictyostelium discoideum slug cDNA, clone SSI371.       58   3e-04  1
(DY926227) CHAY9751.b1_N13.ab1 CHA(XYZ) common wild sunflowe...    40   0.005  2
(AL396162) T7 end of clone AR0AA028F01 of library AR0AA from...    44   0.056  2
(AM478327) Vitis vinifera contig VV78X039372.12, whole genom...    36   0.072  5
(AC191700) Pan troglodytes BAC clone CH251-628B14 from chrom...    50   0.085  1
(AY672645) Homo sapiens fibroblast growth factor 13 (FGF13) ...    50   0.085  1
(AL031386) Human DNA sequence from clone RP6-27P15 on chromo...    50   0.085  1
(AC124558) Mus musculus BAC clone RP23-248O8 from chromosome...    38   0.17   4
(DD220477) ECIST MICROARRAYS FOR DUAL SCREENING OF DNA HYPER...    40   0.29   3
(AL117333) Human DNA sequence from clone RP4-631M13 on chrom...    40   0.29   3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    36   0.30   13
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.31   8
(AC027132) Homo sapiens chromosome 16 clone RP11-378N18, WOR...    38   0.32   6
(EU153401) Felis catus FLA extended class II, class II, clas...    48   0.34   1
(AY152833) Felis catus clone BAC 244e2 major histocompatibli...    48   0.34   1
(CR524738) Pongo abelii mRNA; EST DKFZp470M2011_r1 (from clo...    48   0.34   1
(EX328636) GQ02828.SP6_M06 GQ028 - Cambium / phloem scrappin...    48   0.34   1
(EX328273) GQ02828.B7_M06 GQ028 - Cambium / phloem scrapping...    48   0.34   1
(EX327971) GQ02827.SP6_O02 GQ028 - Cambium / phloem scrappin...    48   0.34   1
(EX327671) GQ02827.B7_O02 GQ028 - Cambium / phloem scrapping...    48   0.34   1
(BX936281) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   0.62   8
(AC090679) Homo sapiens 12 BAC RP11-80O3 (Roswell Park Cance...    38   0.83   6
(BJ328249) Dictyostelium discoideum cDNA clone:dda23b13, 5' ...    32   0.90   3
(CD081645) MA3-9999U-M324-H11-U.G MA3-0001 Schistosoma manso...    36   0.93   2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   1.2    8
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.3    1
(AC135206) Oryza sativa Japonica Group chromosome 3 clone OJ...    46   1.3    1
(EA682037) Sequence 60916 from patent US 7365185.                  46   1.3    1
(AC148351) Sorex araneus clone SA_Ba-157G15, WORKING DRAFT S...    46   1.3    1
(CU914724) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    1
(AC231809) Oryza minuta clone OM__Ba0138K15, *** SEQUENCING ...    46   1.3    1
(AC226779) Oryza minuta clone OM__Ba0116J09, *** SEQUENCING ...    46   1.3    1
(AC225398) Oryza officinalis clone OO__Ba0059A10, *** SEQUEN...    46   1.3    1
(AC225075) Oryza officinalis clone OO__Ba0041M24, *** SEQUEN...    46   1.3    1
(AC217204) Oryza punctata clone OP__Ba0073M18, *** SEQUENCIN...    46   1.3    1
(AC215211) Oryza glaberrima clone OG_BBa0065D02, *** SEQUENC...    46   1.3    1
(AC211615) Oryza glaberrima clone OG_BBa0094H21, *** SEQUENC...    46   1.3    1
(AM663098) Entamoeba moshkovskii FIC GSS, clone mosh131f11.q1k.    46   1.3    1
(AM053663) Epidinium ecaudatum EST, clone Eec07_D12.               46   1.3    1
(AC189616) Brassica rapa subsp. pekinensis clone KBrH099I08,...    42   1.3    2
(CR962134) Medicago truncatula chromosome 5 clone mte1-40n1,...    32   1.4    7
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    32   1.7    10
(AL355489) Human DNA sequence *** SEQUENCING CANCELLED *** f...    32   1.7    6
(AM424414) Vitis vinifera contig VV78X256170.11, whole genom...    36   1.8    3
(DC214906) Plasmodium berghei strain ANKA cDNA clone:MG01703...    42   1.9    2
(AC131606) Rattus norvegicus clone CH230-2H20, *** SEQUENCIN...    42   2.1    3
(FC848892) CBHN5497.fwd CBHN Metridium senile tentacle Metri...    34   2.3    2
(AZ175738) SP_0133_A1_G06_T7A Strongylocentrotus purpuratus,...    38   2.4    2
(AC022947) Homo sapiens clone RP11-80O3, WORKING DRAFT SEQUE...    38   3.3    4
(AC225507) Medicago truncatula clone mth2-161b5, WORKING DRA...    38   4.6    2
(CR450810) Zebrafish DNA sequence from clone CH211-156N19 in...    34   4.9    3
(CU207418) Mouse DNA sequence from clone DN-55C18 on chromos...    44   5.2    1
(AL671672) Mouse DNA sequence from clone RP23-461E2 on chrom...    44   5.2    1
(AC174339) Medicago truncatula clone mth2-161b15, complete s...    44   5.2    1
(AE014298) Drosophila melanogaster chromosome X, complete se...    44   5.2    1
(AC104608) Drosophila melanogaster X BAC RP98-35A18 (Roswell...    44   5.2    1
(AC104606) Drosophila melanogaster X BAC RP98-26L11 (Roswell...    44   5.2    1
(AL590302) Human DNA sequence from clone RP11-252P19 on chro...    44   5.2    1
(AC067836) Homo sapiens chromosome 8, clone RP11-785H20, com...    44   5.2    1
(AC037486) Homo sapiens chromosome 8, clone RP11-398G24, com...    44   5.2    1
(AC040959) Homo sapiens chromosome 8 clone RP11-39M22 map 8,...    44   5.2    1
(CU468123) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(AC210805) Zea mays chromosome 4 clone CH201-7M17; ZMMBBc000...    44   5.2    1
(AC204560) Zea mays chromosome 1 clone CH201-396P2; ZMMBBc03...    44   5.2    1
(AC201757) Zea mays chromosome 3 clone ZMMBBb-443H10; ZMMBBb...    44   5.2    1
(AC025484) Homo sapiens clone RP11-252P19, WORKING DRAFT SEQ...    44   5.2    1
(AC014489) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   5.2    1
(AC009281) Homo sapiens chromosome 15 clone 8_C_22 map 15, *...    44   5.2    1
(AZ565418) 208PvE06 Pv MBN #16 (amplified twice) Plasmodium ...    44   5.2    1
(EJ179875) 1092344115743 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.2    1
(DX548870) GH_MBb0048D17f GH_MBb Gossypium hirsutum genomic ...    44   5.2    1
(DU000940) 287309 Tomato MboI BAC Library Solanum lycopersic...    44   5.2    1
(CT210874) Sus scrofa genomic clone CH242-285F2, genomic sur...    44   5.2    1
(BZ483207) BONAA13TF BO_1.6_2_KB_tot Brassica oleracea genom...    44   5.2    1
(FK672588) CCBO1701.b1 CCBO Cochliobolus heterostrophus, Che...    44   5.2    1
(EV474137) Fc_cad_10G10_M13F Folsomia candida SSH cDNA libra...    44   5.2    1
(CP000485) Bacillus thuringiensis str. Al Hakam, complete ge...    44   5.2    1
(AE017355) Bacillus thuringiensis serovar konkukian str. 97-...    44   5.2    1
(AC231337) Medicago truncatula chromosome 2 clone mte1-41n2,...    38   5.6    5
(AX346427) Sequence 1498 from Patent WO0200928.                    34   6.4    3
(AL359032) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   6.4    8
(AC010159) Homo sapiens chromosome 10 clone RP11-326B1, WORK...    36   6.8    5
(CU651629) M.truncatula DNA sequence from clone MTH2-173K16 ...    40   7.7    3
(AC114505) Rattus norvegicus clone CH230-247N8, *** SEQUENCI...    34   7.9    6
(AC093816) Homo sapiens BAC clone RP11-364P2 from 4, complet...    40   7.9    5
(AM453762) Vitis vinifera, whole genome shotgun sequence, co...    36   7.9    4
(CL574592) OB__Ba0021J21.r OB__Ba Oryza brachyantha genomic ...    40   7.9    2
(AC114519) Rattus norvegicus clone CH230-135I20, *** SEQUENC...    40   8.4    4
(EG610670) REPROTRACTF095448A1 POSSUM_01-POSSUM-C-REPROTRACT...    38   8.6    2
(CX585725) TTE00016635 Amplicon Express - Conjugative Form T...    40   8.7    2
(CX986278) DOG_EST_P25E03 Canis familiaris testis cDNA Canis...    40   8.8    2
(CT412512) Sus scrofa genomic clone CH242-472L17, genomic su...    32   9.0    3
(DY681688) TTEA958THB Tetrahymena thermophila EST library, c...    40   9.1    2
(AC179510) Strongylocentrotus purpuratus clone R3-64P18, WOR...    32   9.2    6
(CT573421) M.truncatula DNA sequence from clone MTH2-27B10 o...    32   9.3    6
(AL645593) Mouse DNA sequence from clone RP23-57I15 on chrom...    32   9.4    2

>(BJ417327) Dictyostelium discoideum cDNA clone:ddv30a11, 5' end,
           single read.
          Length = 547

 Score = 1084 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Plus


Query: 1   ttgatcctaatggaaatatgtattcttcatttgttgtttatatcaattacactgaaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttgatcctaatggaaatatgtattcttcatttgttgtttatatcaattacactgaaacat 60


Query: 61  taaataaatatgaacaacccccaattactgtatactctagtgctttttcggtaatggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaataaatatgaacaacccccaattactgtatactctagtgctttttcggtaatggtaa 120


Query: 121 atgcaactacaaaaccatttataatttatattatggaatttgatatgagtggaaatctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcaactacaaaaccatttataatttatattatggaatttgatatgagtggaaatctaa 180


Query: 181 tttccatttcaaacaaatttacagttgtaccaaaaattttcaatatatcatatgatttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttccatttcaaacaaatttacagttgtaccaaaaattttcaatatatcatatgatttac 240


Query: 241 ctccaacacccacaccaacaactccattaccaacaaatccaccacaattatgttttggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctccaacacccacaccaacaactccattaccaacaaatccaccacaattatgttttggtg 300


Query: 301 aaccaatttgtggtggtaaaaatcaaggttattgtttaacaaatgttggatgtgtttgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaccaatttgtggtggtaaaaatcaaggttattgtttaacaaatgttggatgtgtttgct 360


Query: 361 attcaccttggattggtaatgattgtagtcacaagtaatcataattccacaaccaaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attcaccttggattggtaatgattgtagtcacaagtaatcataattccacaaccaaaacc 420


Query: 421 aaatccaaatgacccaaccactgaaattataataacaccaaattcaacatcaacatcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaatccaaatgacccaaccactgaaattataataacaccaaattcaacatcaacatcaaa 480


Query: 481 tattcaagattattcatttaaatcaattgtttcattgattggaattagagaaattgattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattcaagattattcatttaaatcaattgtttcattgattggaattagagaaattgattt 540


Query: 541 taattca 547
           |||||||
Sbjct: 541 taattca 547

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 739,533,443
Number of extensions: 47741359
Number of successful extensions: 4097109
Number of sequences better than 10.0: 104
Length of query: 556
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 533
Effective length of database: 93,106,754,628
Effective search space: 49625900216724
Effective search space used: 49625900216724
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10553-1 (Contig-U10553-1Q) /CSM_Contig/Contig-U10553-1Q.Seq.d
         (556 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...    80   1e-27
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...    71   8e-25
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    57   1e-17
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    69   4e-17
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    48   3e-12
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...    49   9e-10
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    43   1e-09
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    53   9e-09
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...    41   3e-05
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...    44   0.003
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    43   0.005
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso...    31   0.30
CP000383_1438(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    34   2.2
CP000383_2467(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    33   4.9
DQ976710_2(DQ976710|pid:none) Hylobates klossii NOTCH2 (NOTCH2) ...    33   4.9
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;...    33   4.9
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co...    33   4.9
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909....    33   4.9
AF090951_1(AF090951|pid:none) Lacerta viridis reelin (reln) mRNA...    33   6.4
AB174356_1(AB174356|pid:none) Macaca fascicularis brain cDNA clo...    33   6.4
AB009671_2(AB009671|pid:none) Homo sapiens mRNA for MDC2 alpha, ...    32   8.4
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c...    32   8.4
(Q9P0K1) RecName: Full=Disintegrin and metalloproteinase domain-...    32   8.4

>AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromosome 2
            map 2567470-3108875 strain AX4, complete sequence.
          Length = 1366

 Score = 80.5 bits (197), Expect(2) = 1e-27
 Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
 Frame = +3

Query: 36   VYINYTETLNKYEQPPITVYSSAFSVM-VNATTKPFIIYIMEFDMSGNLISISNKFTVVP 212
            VY+ Y    +  +  P TVY SA  +  +  T KPFII + +  ++      SN+FTV P
Sbjct: 941  VYVKYEGDSSFNQIVPTTVYWSAIFIKNIKPTDKPFIIKVSDLPLT------SNEFTVNP 994

Query: 213  KIFNI--SYDXXXXXXXXXXXXXXXXQLCFGEPICGGKNQGYCLTNVGCVCYSPWIGNDC 386
             ++N                      Q C GEP+CGG  QG+C ++ GC+CY PWIGNDC
Sbjct: 995  IVYNFIDPTPTQTPIPTSSPMPTNKPQTCLGEPVCGGSKQGFCSSS-GCICYPPWIGNDC 1053

Query: 387  S 389
            +
Sbjct: 1054 N 1054

 Score = 65.5 bits (158), Expect(2) = 1e-27
 Identities = 29/53 (54%), Positives = 40/53 (75%)
 Frame = +2

Query: 389  SQVIIIPQPKPNPNDPTTEIIITPNSTSTSNIQDYSFKSIVSLIGIREIDFNS 547
            SQVIIIPQP  N + P+TE+ I  N+  TSN  +Y FKS++S++ +RE+DFNS
Sbjct: 1055 SQVIIIPQPSTNTSQPSTELPIIDNNNQTSNSTNYLFKSLISIVSLRELDFNS 1107

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 808,747,520
Number of extensions: 14930821
Number of successful extensions: 38272
Number of sequences better than 10.0: 23
Number of HSP's gapped: 38185
Number of HSP's successfully gapped: 34
Length of query: 185
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 64
Effective length of database: 653,248,294
Effective search space: 41807890816
Effective search space used: 41807890816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U10553-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0