Contig-U10543-1
Contig ID Contig-U10543-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10543-1 (Contig-U10543-1Q) /CSM_Contig/Contig-U10543-1Q.Seq.d
NNNNNNNNNNTNCAAATTCATTAATAGGAAGNNATAATTAGTCCAAGAGN
TCCAGGAAGAAATTTAAAGATTATTGGTCNAATTATTAGTGAGGATTTAT
ATAATCGGATATAGGAAAGAGGAATCATGGAGATTTTTCACCCNCAANAT
AAAATGTGGTTCTCTGGGTNNNATATGTTTAGNTTAGAAATGAATAATGG
GGCCNATAATAATAATTCANCCAGTGGAATCATTGGTGGTTCAACAATTT
CTGGTGAAAAGGTTAAACCAGGGGNATTTGAAAAATATGTAAAAGAAAAG
GGNAATATTCANTTTGGTGATNAGAGTATGNATAAANTCATATTGGNAGA
GAACGGNGATCCANNNNAAGAAAANAAGAAACANNAACAACAATACCTTA
ANAATAAAAGACCNCCACCACAACNACTACNACAACCACNCCGNNGNCAA
CAACCTCANNNGCNCNCNCTGGNGNANACATGGNNAAAAACTTGGAACAT
TTAAATAGAGAAGGA

Gap no gap
Contig length 515
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U10543
List of clone(s)

est1=VFO106Z,1,506
Translated Amino Acid sequence
xxxxqih**exiisprxpgrnlkiigxiisedlynri*ERGIMEIFHPQXKMWFSGXXMF
XLEMNNGAXNNNSXSGIIGGSTISGEKVKPGXFEKYVKEKGNIXFGDXSMXKXILXENGD
PXXEXKKXXQQYLXNKRPPPQXLXQPXRXQQPXXXXLXXTWXKTWNI*iek


Translated Amino Acid sequence (All Frames)
Frame A:
xxxxqih**exiisprxpgrnlkiigxiisedlynri*ERGIMEIFHPQXKMWFSGXXMF
XLEMNNGAXNNNSXSGIIGGSTISGEKVKPGXFEKYVKEKGNIXFGDXSMXKXILXENGD
PXXEXKKXXQQYLXNKRPPPQXLXQPXRXQQPXXXXLXXTWXKTWNI*iek


Frame B:
xxxxkfinrkx*lvqexqeei*rllvxllvriyiigyrkeeswrfftxxikcgslgxicl
x*k*imgpiiiixpveslvvqqflvkrlnqgxlknm*kkrxifxlvxrvxixsywxrtxi
xxkkxrnxnnntlxikdxhhnxyxnhxxxnnlxxxxwxxhgxklgtfk*rr


Frame C:
xxxxnsligxxn*skxsrkkfkdywsny**gfi*sdigkrnhgdfspxx*nvvlwvxyv*
xrne*wgx***fxqwnhwwfnnfw*kg*trgi*kickrkgxysxw*xeyx*xhigrerxs
xxrkxetxttip*x*ktxttttttttpxxttsxaxxgxxmxknlehlnreg


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10543-1 (Contig-U10543-1Q)
/CSM_Contig/Contig-U10543-1Q.Seq.d
(515 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10543-1 (Contig-U10543-1Q) /CSM_Contig/Conti... 724 0.0
Contig-U14742-1 (Contig-U14742-1Q) /CSM_Contig/Conti... 436 e-122
Contig-U12149-1 (Contig-U12149-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U10587-1 (Contig-U10587-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U14524-1 (Contig-U14524-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U08192-1 (Contig-U08192-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U04046-1 (Contig-U04046-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U12518-1 (Contig-U12518-1Q) /CSM_Contig/Conti... 32 0.56
Contig-U11865-1 (Contig-U11865-1Q) /CSM_Contig/Conti... 32 0.56
Contig-U11831-1 (Contig-U11831-1Q) /CSM_Contig/Conti... 32 0.56

>Contig-U10543-1 (Contig-U10543-1Q) /CSM_Contig/Contig-U10543-1Q.Seq.d
Length = 515

Score = 724 bits (365), Expect = 0.0
Identities = 503/503 (100%)
Strand = Plus / Plus


Query: 13 caaattcattaataggaagnnataattagtccaagagntccaggaagaaatttaaagatt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 caaattcattaataggaagnnataattagtccaagagntccaggaagaaatttaaagatt 72


Query: 73 attggtcnaattattagtgaggatttatataatcggatataggaaagaggaatcatggag 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 attggtcnaattattagtgaggatttatataatcggatataggaaagaggaatcatggag 132


Query: 133 atttttcacccncaanataaaatgtggttctctgggtnnnatatgtttagnttagaaatg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 atttttcacccncaanataaaatgtggttctctgggtnnnatatgtttagnttagaaatg 192


Query: 193 aataatggggccnataataataattcanccagtggaatcattggtggttcaacaatttct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aataatggggccnataataataattcanccagtggaatcattggtggttcaacaatttct 252


Query: 253 ggtgaaaaggttaaaccaggggnatttgaaaaatatgtaaaagaaaagggnaatattcan 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggtgaaaaggttaaaccaggggnatttgaaaaatatgtaaaagaaaagggnaatattcan 312


Query: 313 tttggtgatnagagtatgnataaantcatattggnagagaacggngatccannnnaagaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttggtgatnagagtatgnataaantcatattggnagagaacggngatccannnnaagaa 372


Query: 373 aanaagaaacannaacaacaataccttaanaataaaagaccnccaccacaacnactacna 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aanaagaaacannaacaacaataccttaanaataaaagaccnccaccacaacnactacna 432


Query: 433 caaccacnccgnngncaacaacctcannngcncncnctggngnanacatggnnaaaaact 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 caaccacnccgnngncaacaacctcannngcncncnctggngnanacatggnnaaaaact 492


Query: 493 tggaacatttaaatagagaagga 515
|||||||||||||||||||||||
Sbjct: 493 tggaacatttaaatagagaagga 515


>Contig-U14742-1 (Contig-U14742-1Q) /CSM_Contig/Contig-U14742-1Q.Seq.d
Length = 1266

Score = 436 bits (220), Expect = e-122
Identities = 353/401 (88%), Gaps = 4/401 (0%)
Strand = Plus / Plus


Query: 13 caaattcattaataggaagnnataattagtccaagagntccaggaagaaatttaaagatt 72
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 297 caaattcattaataggaaga-ataattagtccaagagctccaggaagaaatttaaagatt 355


Query: 73 attggtcnaattattagtgaggatttatataatcggatataggaaagaggaatcatggag 132
||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct: 356 attggtcaaattattagtgaggatttatataatca-atataa-aaagagtaatcatggag 413


Query: 133 atttttcacccncaanataaaatgtggttctctgggtnnnatatgtttagnttagaaatg 192
|||||||| ||| ||||||||||||||||||| | |||||||||| |||||||||
Sbjct: 414 atttttcaaa-acaatataaaatgtggttctctggtttaaatatgtttagtttagaaatg 472


Query: 193 aataatggggccnataataataattcanccagtggaatcattggtggttcaacaatttct 252
|||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 473 aataatggtaccaataataataattcatccagtggtatcattggtggttcaacaatttct 532


Query: 253 ggtgaaaaggttaaaccaggggnatttgaaaaatatgtaaaagaaaagggnaatattcan 312
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 533 ggtgaaaaggttataccagaactatttgaaaaatatgtaaaagaaaagtttaatattcat 592


Query: 313 tttggtgatnagagtatgnataaantcatattggnagagaacggngatccannnnaagaa 372
||||||||| |||||||| ||||| ||||||||| |||||||| |||||| ||| |
Sbjct: 593 tttggtgataagagtatgaataaattcatattggtagagaacgacgatccattagaagta 652


Query: 373 aanaagaaacannaacaacaataccttaanaataaaagacc 413
|| |||||||| |||||||||||||||| |||||||||||
Sbjct: 653 aagaagaaacaaaaacaacaataccttaaaaataaaagacc 693


Score = 61.9 bits (31), Expect = 6e-10
Identities = 82/105 (78%)
Strand = Plus / Plus


Query: 411 accnccaccacaacnactacnacaaccacnccgnngncaacaacctcannngcncncnct 470
||| |||||||||| ||||| |||||||| || ||||||||||| || | | ||
Sbjct: 1079 accaccaccacaacaactactacaaccactccaccaacaacaacctcatttgctctctct 1138


Query: 471 ggngnanacatggnnaaaaacttggaacatttaaatagagaagga 515
|| | | ||| ||||||||||||||||||||||||||||||
Sbjct: 1139 ggtaaaaatatgtttaaaaacttggaacatttaaatagagaagga 1183


>Contig-U12149-1 (Contig-U12149-1Q) /CSM_Contig/Contig-U12149-1Q.Seq.d
Length = 2002

Score = 36.2 bits (18), Expect = 0.036
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 279 tgaaaaatatgtaaaagaaaag 300
||||||||||||||| ||||||
Sbjct: 730 tgaaaaatatgtaaaggaaaag 751


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,993
Number of Sequences: 6905
Number of extensions: 12993
Number of successful extensions: 387
Number of sequences better than 10.0: 137
length of query: 515
length of database: 5,674,871
effective HSP length: 16
effective length of query: 499
effective length of database: 5,564,391
effective search space: 2776631109
effective search space used: 2776631109
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.20
Homology vs DNA
Query= Contig-U10543-1 (Contig-U10543-1Q) /CSM_Contig/Contig-U10543-1Q.Seq.d
(515 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435956) Dictyostelium discoideum cDNA clone:ddv29k01, 3' ... 724 0.0 1
(BJ412245) Dictyostelium discoideum cDNA clone:ddv7c17, 5' e... 260 e-111 4
(AU262909) Dictyostelium discoideum vegetative cDNA clone:VS... 244 3e-60 1
(BJ430512) Dictyostelium discoideum cDNA clone:ddv7c17, 3' e... 125 5e-35 2
(CN646378) ILLUMIGEN_MCQ_26100 Katze_MMPL2 Macaca mulatta cD... 50 0.079 1
(AC147712) Medicago truncatula clone mth2-34f1, complete seq... 44 4.8 1
(AC022093) Homo sapiens chromosome 5 clone CTB-169E12, compl... 44 4.8 1
(AC230618) Bos taurus clone CH240-503C2, WORKING DRAFT SEQUE... 44 4.8 1
(AQ782654) HS_3183_B1_E10_MR CIT Approved Human Genomic Sper... 44 4.8 1
(ET181933) PT_7Ga_B01_00002_O22_f Pinus taeda '7-56' genomic... 44 4.8 1
(EI450086) PV_GBa0049E08.f PV_GBa Phaseolus vulgaris genomic... 44 4.8 1

>(BJ435956) Dictyostelium discoideum cDNA clone:ddv29k01, 3' end,
single read.
Length = 506

Score = 724 bits (365), Expect = 0.0
Identities = 503/503 (100%)
Strand = Plus / Minus


Query: 13 caaattcattaataggaagnnataattagtccaagagntccaggaagaaatttaaagatt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaattcattaataggaagnnataattagtccaagagntccaggaagaaatttaaagatt 445


Query: 73 attggtcnaattattagtgaggatttatataatcggatataggaaagaggaatcatggag 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attggtcnaattattagtgaggatttatataatcggatataggaaagaggaatcatggag 385


Query: 133 atttttcacccncaanataaaatgtggttctctgggtnnnatatgtttagnttagaaatg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttttcacccncaanataaaatgtggttctctgggtnnnatatgtttagnttagaaatg 325


Query: 193 aataatggggccnataataataattcanccagtggaatcattggtggttcaacaatttct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aataatggggccnataataataattcanccagtggaatcattggtggttcaacaatttct 265


Query: 253 ggtgaaaaggttaaaccaggggnatttgaaaaatatgtaaaagaaaagggnaatattcan 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgaaaaggttaaaccaggggnatttgaaaaatatgtaaaagaaaagggnaatattcan 205


Query: 313 tttggtgatnagagtatgnataaantcatattggnagagaacggngatccannnnaagaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttggtgatnagagtatgnataaantcatattggnagagaacggngatccannnnaagaa 145


Query: 373 aanaagaaacannaacaacaataccttaanaataaaagaccnccaccacaacnactacna 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aanaagaaacannaacaacaataccttaanaataaaagaccnccaccacaacnactacna 85


Query: 433 caaccacnccgnngncaacaacctcannngcncncnctggngnanacatggnnaaaaact 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 caaccacnccgnngncaacaacctcannngcncncnctggngnanacatggnnaaaaact 25


Query: 493 tggaacatttaaatagagaagga 515
|||||||||||||||||||||||
Sbjct: 24 tggaacatttaaatagagaagga 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 384,947,721
Number of extensions: 26303913
Number of successful extensions: 1311579
Number of sequences better than 10.0: 11
Length of query: 515
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 492
Effective length of database: 93,106,754,628
Effective search space: 45808523276976
Effective search space used: 45808523276976
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10543-1 (Contig-U10543-1Q) /CSM_Contig/Contig-U10543-1Q.Seq.d
(515 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 517,002,967
Number of extensions: 7260324
Number of successful extensions: 4829
Number of sequences better than 10.0: 0
Number of HSP's gapped: 4816
Number of HSP's successfully gapped: 0
Length of query: 171
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 52
Effective length of database: 659,656,864
Effective search space: 34302156928
Effective search space used: 34302156928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.75 gvh: 0.37 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U10543-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0