Contig-U10539-1 |
Contig ID |
Contig-U10539-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
652 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
4505260 |
End point |
4505867 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U10539 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.20 |
Homology vs DNA |
Query= Contig-U10539-1 (Contig-U10539-1Q) /CSM_Contig/Contig-U10539-1Q.Seq.d (652 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ417656) Dictyostelium discoideum cDNA clone:ddv28h08, 5' ... 531 0.0 2 (CR940352) Theileria annulata genomic DNA chromosome 3. 42 0.072 11 (AU037010) Dictyostelium discoideum slug cDNA, clone SSA746. 36 0.30 2 (AP003789) Homo sapiens genomic DNA, chromosome 8q23, clone:... 48 0.40 1 (AC015604) Homo sapiens, clone RP11-45D18, complete sequence. 48 0.40 1 (AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 38 0.67 7 (AY134811) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 0.73 2 (AY134809) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 0.73 2 (AC177487) Strongylocentrotus purpuratus clone R3-61M7, WORK... 34 0.85 2 (AC178680) Strongylocentrotus purpuratus clone R3-3007B23, W... 42 0.93 3 (AY134784) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2 (AY134804) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2 (AY134790) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2 (AY134794) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2 (AY134785) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2 (AY134808) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2 (AY134795) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.1 2 (AY134791) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.1 2 (AC201363) Strongylocentrotus purpuratus clone R3-17C14, WOR... 42 1.5 4 (AL732421) Zebrafish DNA sequence from clone BUSM1-249N21 in... 36 1.5 4 (BX294657) Zebrafish DNA sequence from clone DKEY-21K18 in l... 46 1.6 1 (AL691499) Mouse DNA sequence from clone RP23-45O6 on chromo... 46 1.6 1 (AC192291) Pan troglodytes BAC clone CH251-276C11 from chrom... 46 1.6 1 (AC099679) Homo sapiens chromosome 1 clone RP4-683M8, comple... 46 1.6 1 (CU302220) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1 (BX321891) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.6 1 (AL451079) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1 (AL139427) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 1.6 1 (CT347839) Sus scrofa genomic clone CH242-46A11, genomic sur... 46 1.6 1 (EL456557) CHTM9621.b1_I05.ab1 CHT(LMS) Jerusalem artichoke ... 46 1.6 1 (EL437649) CHTM12597.b1_J06.ab1 CHT(LMS) Jerusalem artichoke... 46 1.6 1 (CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 1.6 5 (AC096739) Homo sapiens BAC clone RP11-213G21 from 4, comple... 38 2.3 3 (AL451813) T. brucei sheared genomic DNA clone 4f07, forward... 36 2.3 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 2.6 4 (AC136028) Rattus norvegicus clone CH230-1D18, WORKING DRAFT... 40 2.7 3 (AC173985) Strongylocentrotus purpuratus clone R3-1004F15, *... 38 2.8 5 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 2.9 2 (AC007752) Drosophila melanogaster, chromosome 3R, region 87... 40 2.9 4 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 32 3.0 2 (AC181703) Strongylocentrotus purpuratus clone R3-52D12, WOR... 36 3.0 4 (AG662472) Macaca fuscata fuscata DNA, clone: MSB2-082F13_R,... 42 3.0 2 (AC184599) Strongylocentrotus purpuratus clone R3-3103M10, W... 32 3.1 2 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 32 3.1 2 (AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 32 3.2 2 (AJ307410) Yarrowia lipolytica complete mitochondrial genome. 34 3.4 4 (EK448839) 1095467062704 Global-Ocean-Sampling_GS-32-01-01-1... 36 3.9 2 (EJ456125) 1093017481799 Global-Ocean-Sampling_GS-28-01-01-1... 42 4.0 2 (CT433676) Sus scrofa genomic clone CH242-451G2, genomic sur... 34 4.0 2 (BJ330624) Dictyostelium discoideum cDNA clone:dda32n06, 5' ... 32 4.1 2 (BW638189) Dugesia ryukyuensis mRNA, clone: Dr_sW_010_N23, 5... 32 4.2 2 (CU683892) Zebrafish DNA sequence from clone ZFOS-335G10 in ... 38 5.0 3 (CU463993) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 5.7 5 (CR354402) Zebrafish DNA sequence from clone CH211-119D14 in... 44 6.2 1 (CR293501) Zebrafish DNA sequence from clone DKEYP-86F7 in l... 44 6.2 1 (BX284636) Zebrafish DNA sequence from clone DKEYP-35F9 in l... 44 6.2 1 (AL954149) Zebrafish DNA sequence from clone CH211-146G19 in... 44 6.2 1 (AL844179) Zebrafish DNA sequence from clone DKEY-218M22. 44 6.2 1 (BV302839) S236P6233RC3.T0 AlaskanMalamute Canis familiaris ... 44 6.2 1 (AC147079) Pan troglodytes BAC clone RP43-184E24 from chromo... 44 6.2 1 (AC146149) Pan troglodytes BAC clone RP43-37G13 from chromos... 44 6.2 1 (CR936948) Medicago truncatula chromosome 5 clone mth2-29e9,... 44 6.2 1 (AC150559) Medicago truncatula clone mth2-67j8, complete seq... 44 6.2 1 (AL133288) Human DNA sequence from clone RP4-671D7 on chromo... 44 6.2 1 (CU468483) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.2 1 (CT962512) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.2 1 (CT027773) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.2 1 (CR749766) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.2 1 (AC232125) Solanum tuberosum strain Diploid genotype RH89-03... 44 6.2 1 (AC201597) Strongylocentrotus purpuratus clone R3-49J15, WOR... 44 6.2 1 (AC201503) Strongylocentrotus purpuratus clone R3-3078I11, W... 44 6.2 1 (AC198273) Spermophilus tridecemlineatus clone VMRC20-147M8,... 44 6.2 1 (ET215692) MUGQ_CH252P419C17Sp6_CP802_077 CHORI-252 Vervet M... 44 6.2 1 (ET205462) MUGQ_CH252P402D18Sp6_CP767_077 CHORI-252 Vervet M... 44 6.2 1 (ED450263) AUAC-aam60e07.g1 Ascaris suum whole genome shotgu... 44 6.2 1 (ED415240) AUAC-aah93b04.b1 Ascaris suum whole genome shotgu... 44 6.2 1 (ED295209) AUAC-aaf14h02.g1 Ascaris suum whole genome shotgu... 44 6.2 1 (ED283029) AUAC-aad51d02.b1 Ascaris suum whole genome shotgu... 44 6.2 1 (DX983396) SBA010_P20.f Sugar beet BAC library USH20 (Code S... 44 6.2 1 (EB290086) CNSN01-F-011783-501 Normalized CNS library (juven... 44 6.2 1 (EB260908) CNSN01-C-003444-501 Normalized CNS library (juven... 44 6.2 1 (CN753879) ID0AAA11BF12RM1 ApMS Acyrthosiphon pisum cDNA clo... 44 6.2 1 (CN584799) USDA-FP_127868 Acyrthosiphon pisum, Pea Aphid Acy... 44 6.2 1 (BG605886) RHIZ2_82_G05.g1_A003 Rhizome2 (RHIZ2) Sorghum pro... 44 6.2 1 (EY813977) PT11-C1-900-047-D06-CT.F Poncirus trifoliata leaf... 44 6.2 1 (EY391070) CAXA9069.rev CAXA Helobdella robusta Subtracted L... 44 6.2 1 (EY387387) CAXA6734.rev CAXA Helobdella robusta Subtracted L... 44 6.2 1 (EY379047) CAXA17585.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1 (EY373623) CAXA14648.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1 (EY372135) CAXA13846.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1 (EY371887) CAXA13703.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1 (EY370073) CAXA12712.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1 (EY362827) CAWZ8451.rev CAWZ Helobdella robusta Primary Late... 44 6.2 1 (EY360150) CAWZ6879.rev CAWZ Helobdella robusta Primary Late... 44 6.2 1 (EY144621) CBTH916.g1_H13.ab1:P Triphysaria pusilla root tip... 44 6.2 1 (BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen... 44 6.2 1 (AC180198) Strongylocentrotus purpuratus clone R3-3G17, WORK... 38 6.2 5 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 38 7.1 2 (AC214599) Populus trichocarpa clone POP063-M17, complete se... 34 7.2 5 (AL390121) Human DNA sequence from clone RP11-147C23 on chro... 42 7.2 2
>(BJ417656) Dictyostelium discoideum cDNA clone:ddv28h08, 5' end, single read. Length = 643
Score = 531 bits (268), Expect(2) = 0.0 Identities = 268/268 (100%) Strand = Plus / Plus
Query: 376 atcaaatgaaattaaaggatcaaaagaagttgctaaagatggtcaacatggtgttaaaca 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 atcaaatgaaattaaaggatcaaaagaagttgctaaagatggtcaacatggtgttaaaca 435
Query: 436 attcgatgatccaaagcaaaggggtaaaattacaaagaaaaagattataaaagttggtga 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 attcgatgatccaaagcaaaggggtaaaattacaaagaaaaagattataaaagttggtga 495
Query: 496 aagttcaagatccgttcaattatttaatcatttaccacaatataattcagagttttcaat 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 aagttcaagatccgttcaattatttaatcatttaccacaatataattcagagttttcaat 555
Query: 556 gggtgtatcggtatcaaccgatgaaccaaatgagaaatatccaattcatccagatatcat 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 gggtgtatcggtatcaaccgatgaaccaaatgagaaatatccaattcatccagatatcat 615
Query: 616 ttcattgggattaaagtatgcagagttt 643 |||||||||||||||||||||||||||| Sbjct: 616 ttcattgggattaaagtatgcagagttt 643
Score = 252 bits (127), Expect(2) = 0.0 Identities = 127/127 (100%) Strand = Plus / Plus
Query: 1 caataataataataatgccacttcaccaaaagattcatcaattataggtaaaaataatgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 caataataataataatgccacttcaccaaaagattcatcaattataggtaaaaataatgt 60
Query: 61 aaattcagatttatcaaaagtatcatcatcattaaatgaattgaaatttgaaaaacaacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaattcagatttatcaaaagtatcatcatcattaaatgaattgaaatttgaaaaacaacc 120
Query: 121 aataggt 127 ||||||| Sbjct: 121 aataggt 127
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 557,845,406 Number of extensions: 43135568 Number of successful extensions: 6566972 Number of sequences better than 10.0: 111 Length of query: 652 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 629 Effective length of database: 93,106,754,628 Effective search space: 58564148661012 Effective search space used: 58564148661012 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.28 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |