Contig-U10539-1
Contig ID Contig-U10539-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10539-1 (Contig-U10539-1Q) /CSM_Contig/Contig-U10539-1Q.Seq.d
CAATAATAATAATAATGCCACTTCACCAAAAGATTCATCAATTATAGGTA
AAAATAATGTAAATTCAGATTTATCAAAAGTATCATCATCATTAAATGAA
TTGAAATTTGAAAAACAACCAATAGGTTCAACATCTTCAACACCAACATC
CACTCCATCATCTACACCATCATCATCAACTCCATCATCAACTCCATCAA
CACCAAATACAAATTCACAACAACAACAACAACAACAACAACAACAAAAG
AAACAACAACAACAACAACCAAAACAACCACAACAACCAAAACAACAATC
AAAGCAACAAGCAACACAACAAGATAAAAAAGATAAAGAACAACAACAAC
AACAACAAGATAAACAAGATAAAGAATCAAATGAAATTAAAGGATCAAAA
GAAGTTGCTAAAGATGGTCAACATGGTGTTAAACAATTCGATGATCCAAA
GCAAAGGGGTAAAATTACAAAGAAAAAGATTATAAAAGTTGGTGAAAGTT
CAAGATCCGTTCAATTATTTAATCATTTACCACAATATAATTCAGAGTTT
TCAATGGGTGTATCGGTATCAACCGATGAACCAAATGAGAAATATCCAAT
TCATCCAGATATCATTTCATTGGGATTAAAGTATGCAGAGTTTNNNNNNN
NN

Gap no gap
Contig length 652
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4505260
End point 4505867
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U10539
List of clone(s)

est1=VFN828F,1,643
Translated Amino Acid sequence
NNNNNATSPKDSSIIGKNNVNSDLSKVSSSLNELKFEKQPIGSTSSTPTSTPSSTPSSST
PSSTPSTPNTNSQQQQQQQQQQKKQQQQQPKQPQQPKQQSKQQATQQDKKDKEQQQQQQD
KQDKESNEIKGSKEVAKDGQHGVKQFDDPKQRGKITKKKIIKVGESSRSVQLFNHLPQYN
SEFSMGVSVSTDEPNEKYPIHPDIISLGLKYAEFXXX


Translated Amino Acid sequence (All Frames)
Frame A:
q****chftkrfinyr*k*ckfrfiksiiiik*iei*kttnrfnifntnihsiiytiiin
siinsintkykfttttttttttkettttttktttttkttikatsnttr*kr*rttttttr
*tr*rik*n*rikrsc*rwstwc*tir*skakg*nykekdyksw*kfkirsii*sftti*
frvfngciginr*tk*eisnssryhfigikvcrvxxx


Frame B:
NNNNNATSPKDSSIIGKNNVNSDLSKVSSSLNELKFEKQPIGSTSSTPTSTPSSTPSSST
PSSTPSTPNTNSQQQQQQQQQQKKQQQQQPKQPQQPKQQSKQQATQQDKKDKEQQQQQQD
KQDKESNEIKGSKEVAKDGQHGVKQFDDPKQRGKITKKKIIKVGESSRSVQLFNHLPQYN
SEFSMGVSVSTDEPNEKYPIHPDIISLGLKYAEFXXX


Frame C:
iiiimplhqkihql*vkim*iqiyqkyhhh*mn*nlknnq*vqhlqhqhplhhlhhhhql
hhqlhqhqiqihnnnnnnnnnkrnnnnnnqnnhnnqnnnqsnkqhnkikkiknnnnnnki
nkiknqmklkdqkkllkmvnmvlnnsmiqskgvklqrkrl*klvkvqdpfnyliiyhnii
qsfqwvyryqpmnqmrniqfiqisfhwd*smqsxxx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10539-1 (Contig-U10539-1Q)
/CSM_Contig/Contig-U10539-1Q.Seq.d
(652 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10539-1 (Contig-U10539-1Q) /CSM_Contig/Conti... 565 e-161
Contig-U09273-1 (Contig-U09273-1Q) /CSM_Contig/Conti... 52 8e-07
Contig-U04926-1 (Contig-U04926-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U03923-1 (Contig-U03923-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U13829-1 (Contig-U13829-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U09254-1 (Contig-U09254-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U13909-1 (Contig-U13909-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U13171-1 (Contig-U13171-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U12948-1 (Contig-U12948-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U09332-1 (Contig-U09332-1Q) /CSM_Contig/Conti... 30 2.8

>Contig-U10539-1 (Contig-U10539-1Q) /CSM_Contig/Contig-U10539-1Q.Seq.d
Length = 652

Score = 565 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Plus


Query: 359 gataaacaagataaagaatcaaatgaaattaaaggatcaaaagaagttgctaaagatggt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gataaacaagataaagaatcaaatgaaattaaaggatcaaaagaagttgctaaagatggt 418


Query: 419 caacatggtgttaaacaattcgatgatccaaagcaaaggggtaaaattacaaagaaaaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caacatggtgttaaacaattcgatgatccaaagcaaaggggtaaaattacaaagaaaaag 478


Query: 479 attataaaagttggtgaaagttcaagatccgttcaattatttaatcatttaccacaatat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 attataaaagttggtgaaagttcaagatccgttcaattatttaatcatttaccacaatat 538


Query: 539 aattcagagttttcaatgggtgtatcggtatcaaccgatgaaccaaatgagaaatatcca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aattcagagttttcaatgggtgtatcggtatcaaccgatgaaccaaatgagaaatatcca 598


Query: 599 attcatccagatatcatttcattgggattaaagtatgcagagttt 643
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 attcatccagatatcatttcattgggattaaagtatgcagagttt 643


Score = 254 bits (128), Expect = 1e-67
Identities = 128/128 (100%)
Strand = Plus / Plus


Query: 1 caataataataataatgccacttcaccaaaagattcatcaattataggtaaaaataatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caataataataataatgccacttcaccaaaagattcatcaattataggtaaaaataatgt 60


Query: 61 aaattcagatttatcaaaagtatcatcatcattaaatgaattgaaatttgaaaaacaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaattcagatttatcaaaagtatcatcatcattaaatgaattgaaatttgaaaaacaacc 120


Query: 121 aataggtt 128
||||||||
Sbjct: 121 aataggtt 128


Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 191 actccatcaacaccaaatacaaattc 216
||||||||||||||||||||||||||
Sbjct: 191 actccatcaacaccaaatacaaattc 216


>Contig-U09273-1 (Contig-U09273-1Q) /CSM_Contig/Contig-U09273-1Q.Seq.d
Length = 835

Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 191 actccatcaacaccaaatacaaattc 216
||||||||||||||||||||||||||
Sbjct: 80 actccatcaacaccaaatacaaattc 105


Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 114 aacaaccaataggtt 128
|||||||||||||||
Sbjct: 3 aacaaccaataggtt 17


>Contig-U04926-1 (Contig-U04926-1Q) /CSM_Contig/Contig-U04926-1Q.Seq.d
Length = 1020

Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 361 taaacaagataaagaatca 379
|||||||||||||||||||
Sbjct: 80 taaacaagataaagaatca 98


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,351
Number of Sequences: 6905
Number of extensions: 26351
Number of successful extensions: 10516
Number of sequences better than 10.0: 1525
length of query: 652
length of database: 5,674,871
effective HSP length: 16
effective length of query: 636
effective length of database: 5,564,391
effective search space: 3538952676
effective search space used: 3538952676
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.20
Homology vs DNA
Query= Contig-U10539-1 (Contig-U10539-1Q) /CSM_Contig/Contig-U10539-1Q.Seq.d
(652 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ417656) Dictyostelium discoideum cDNA clone:ddv28h08, 5' ... 531 0.0 2
(CR940352) Theileria annulata genomic DNA chromosome 3. 42 0.072 11
(AU037010) Dictyostelium discoideum slug cDNA, clone SSA746. 36 0.30 2
(AP003789) Homo sapiens genomic DNA, chromosome 8q23, clone:... 48 0.40 1
(AC015604) Homo sapiens, clone RP11-45D18, complete sequence. 48 0.40 1
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 38 0.67 7
(AY134811) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 0.73 2
(AY134809) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 0.73 2
(AC177487) Strongylocentrotus purpuratus clone R3-61M7, WORK... 34 0.85 2
(AC178680) Strongylocentrotus purpuratus clone R3-3007B23, W... 42 0.93 3
(AY134784) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2
(AY134804) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2
(AY134790) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2
(AY134794) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2
(AY134785) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2
(AY134808) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.0 2
(AY134795) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.1 2
(AY134791) Drosophila buzzatii chromosome 2 clone 60.29.1-ch... 40 1.1 2
(AC201363) Strongylocentrotus purpuratus clone R3-17C14, WOR... 42 1.5 4
(AL732421) Zebrafish DNA sequence from clone BUSM1-249N21 in... 36 1.5 4
(BX294657) Zebrafish DNA sequence from clone DKEY-21K18 in l... 46 1.6 1
(AL691499) Mouse DNA sequence from clone RP23-45O6 on chromo... 46 1.6 1
(AC192291) Pan troglodytes BAC clone CH251-276C11 from chrom... 46 1.6 1
(AC099679) Homo sapiens chromosome 1 clone RP4-683M8, comple... 46 1.6 1
(CU302220) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(BX321891) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.6 1
(AL451079) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(AL139427) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 1.6 1
(CT347839) Sus scrofa genomic clone CH242-46A11, genomic sur... 46 1.6 1
(EL456557) CHTM9621.b1_I05.ab1 CHT(LMS) Jerusalem artichoke ... 46 1.6 1
(EL437649) CHTM12597.b1_J06.ab1 CHT(LMS) Jerusalem artichoke... 46 1.6 1
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 1.6 5
(AC096739) Homo sapiens BAC clone RP11-213G21 from 4, comple... 38 2.3 3
(AL451813) T. brucei sheared genomic DNA clone 4f07, forward... 36 2.3 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 2.6 4
(AC136028) Rattus norvegicus clone CH230-1D18, WORKING DRAFT... 40 2.7 3
(AC173985) Strongylocentrotus purpuratus clone R3-1004F15, *... 38 2.8 5
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 2.9 2
(AC007752) Drosophila melanogaster, chromosome 3R, region 87... 40 2.9 4
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 32 3.0 2
(AC181703) Strongylocentrotus purpuratus clone R3-52D12, WOR... 36 3.0 4
(AG662472) Macaca fuscata fuscata DNA, clone: MSB2-082F13_R,... 42 3.0 2
(AC184599) Strongylocentrotus purpuratus clone R3-3103M10, W... 32 3.1 2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 32 3.1 2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 32 3.2 2
(AJ307410) Yarrowia lipolytica complete mitochondrial genome. 34 3.4 4
(EK448839) 1095467062704 Global-Ocean-Sampling_GS-32-01-01-1... 36 3.9 2
(EJ456125) 1093017481799 Global-Ocean-Sampling_GS-28-01-01-1... 42 4.0 2
(CT433676) Sus scrofa genomic clone CH242-451G2, genomic sur... 34 4.0 2
(BJ330624) Dictyostelium discoideum cDNA clone:dda32n06, 5' ... 32 4.1 2
(BW638189) Dugesia ryukyuensis mRNA, clone: Dr_sW_010_N23, 5... 32 4.2 2
(CU683892) Zebrafish DNA sequence from clone ZFOS-335G10 in ... 38 5.0 3
(CU463993) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 5.7 5
(CR354402) Zebrafish DNA sequence from clone CH211-119D14 in... 44 6.2 1
(CR293501) Zebrafish DNA sequence from clone DKEYP-86F7 in l... 44 6.2 1
(BX284636) Zebrafish DNA sequence from clone DKEYP-35F9 in l... 44 6.2 1
(AL954149) Zebrafish DNA sequence from clone CH211-146G19 in... 44 6.2 1
(AL844179) Zebrafish DNA sequence from clone DKEY-218M22. 44 6.2 1
(BV302839) S236P6233RC3.T0 AlaskanMalamute Canis familiaris ... 44 6.2 1
(AC147079) Pan troglodytes BAC clone RP43-184E24 from chromo... 44 6.2 1
(AC146149) Pan troglodytes BAC clone RP43-37G13 from chromos... 44 6.2 1
(CR936948) Medicago truncatula chromosome 5 clone mth2-29e9,... 44 6.2 1
(AC150559) Medicago truncatula clone mth2-67j8, complete seq... 44 6.2 1
(AL133288) Human DNA sequence from clone RP4-671D7 on chromo... 44 6.2 1
(CU468483) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.2 1
(CT962512) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.2 1
(CT027773) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.2 1
(CR749766) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.2 1
(AC232125) Solanum tuberosum strain Diploid genotype RH89-03... 44 6.2 1
(AC201597) Strongylocentrotus purpuratus clone R3-49J15, WOR... 44 6.2 1
(AC201503) Strongylocentrotus purpuratus clone R3-3078I11, W... 44 6.2 1
(AC198273) Spermophilus tridecemlineatus clone VMRC20-147M8,... 44 6.2 1
(ET215692) MUGQ_CH252P419C17Sp6_CP802_077 CHORI-252 Vervet M... 44 6.2 1
(ET205462) MUGQ_CH252P402D18Sp6_CP767_077 CHORI-252 Vervet M... 44 6.2 1
(ED450263) AUAC-aam60e07.g1 Ascaris suum whole genome shotgu... 44 6.2 1
(ED415240) AUAC-aah93b04.b1 Ascaris suum whole genome shotgu... 44 6.2 1
(ED295209) AUAC-aaf14h02.g1 Ascaris suum whole genome shotgu... 44 6.2 1
(ED283029) AUAC-aad51d02.b1 Ascaris suum whole genome shotgu... 44 6.2 1
(DX983396) SBA010_P20.f Sugar beet BAC library USH20 (Code S... 44 6.2 1
(EB290086) CNSN01-F-011783-501 Normalized CNS library (juven... 44 6.2 1
(EB260908) CNSN01-C-003444-501 Normalized CNS library (juven... 44 6.2 1
(CN753879) ID0AAA11BF12RM1 ApMS Acyrthosiphon pisum cDNA clo... 44 6.2 1
(CN584799) USDA-FP_127868 Acyrthosiphon pisum, Pea Aphid Acy... 44 6.2 1
(BG605886) RHIZ2_82_G05.g1_A003 Rhizome2 (RHIZ2) Sorghum pro... 44 6.2 1
(EY813977) PT11-C1-900-047-D06-CT.F Poncirus trifoliata leaf... 44 6.2 1
(EY391070) CAXA9069.rev CAXA Helobdella robusta Subtracted L... 44 6.2 1
(EY387387) CAXA6734.rev CAXA Helobdella robusta Subtracted L... 44 6.2 1
(EY379047) CAXA17585.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1
(EY373623) CAXA14648.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1
(EY372135) CAXA13846.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1
(EY371887) CAXA13703.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1
(EY370073) CAXA12712.rev CAXA Helobdella robusta Subtracted ... 44 6.2 1
(EY362827) CAWZ8451.rev CAWZ Helobdella robusta Primary Late... 44 6.2 1
(EY360150) CAWZ6879.rev CAWZ Helobdella robusta Primary Late... 44 6.2 1
(EY144621) CBTH916.g1_H13.ab1:P Triphysaria pusilla root tip... 44 6.2 1
(BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen... 44 6.2 1
(AC180198) Strongylocentrotus purpuratus clone R3-3G17, WORK... 38 6.2 5
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 38 7.1 2
(AC214599) Populus trichocarpa clone POP063-M17, complete se... 34 7.2 5
(AL390121) Human DNA sequence from clone RP11-147C23 on chro... 42 7.2 2

>(BJ417656) Dictyostelium discoideum cDNA clone:ddv28h08, 5' end,
single read.
Length = 643

Score = 531 bits (268), Expect(2) = 0.0
Identities = 268/268 (100%)
Strand = Plus / Plus


Query: 376 atcaaatgaaattaaaggatcaaaagaagttgctaaagatggtcaacatggtgttaaaca 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atcaaatgaaattaaaggatcaaaagaagttgctaaagatggtcaacatggtgttaaaca 435


Query: 436 attcgatgatccaaagcaaaggggtaaaattacaaagaaaaagattataaaagttggtga 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attcgatgatccaaagcaaaggggtaaaattacaaagaaaaagattataaaagttggtga 495


Query: 496 aagttcaagatccgttcaattatttaatcatttaccacaatataattcagagttttcaat 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagttcaagatccgttcaattatttaatcatttaccacaatataattcagagttttcaat 555


Query: 556 gggtgtatcggtatcaaccgatgaaccaaatgagaaatatccaattcatccagatatcat 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gggtgtatcggtatcaaccgatgaaccaaatgagaaatatccaattcatccagatatcat 615


Query: 616 ttcattgggattaaagtatgcagagttt 643
||||||||||||||||||||||||||||
Sbjct: 616 ttcattgggattaaagtatgcagagttt 643

Score = 252 bits (127), Expect(2) = 0.0
Identities = 127/127 (100%)
Strand = Plus / Plus


Query: 1 caataataataataatgccacttcaccaaaagattcatcaattataggtaaaaataatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caataataataataatgccacttcaccaaaagattcatcaattataggtaaaaataatgt 60


Query: 61 aaattcagatttatcaaaagtatcatcatcattaaatgaattgaaatttgaaaaacaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaattcagatttatcaaaagtatcatcatcattaaatgaattgaaatttgaaaaacaacc 120


Query: 121 aataggt 127
|||||||
Sbjct: 121 aataggt 127

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 557,845,406
Number of extensions: 43135568
Number of successful extensions: 6566972
Number of sequences better than 10.0: 111
Length of query: 652
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 629
Effective length of database: 93,106,754,628
Effective search space: 58564148661012
Effective search space used: 58564148661012
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.28
Homology vs Protein
Query= Contig-U10539-1 (Contig-U10539-1Q) /CSM_Contig/Contig-U10539-1Q.Seq.d
(652 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AB005231_19(AB005231|pid:none) Arabidopsis thaliana genomic DNA,... 37 0.66
AK158282_1(AK158282|pid:none) Mus musculus adult inner ear cDNA,... 34 4.3
A55146(A55146;B55146)guanine nucleotide exchange factor eIF-2B d... 34 4.3
M98035_1(M98035|pid:none) Mus musculus guanine nucleotide exchan... 34 4.3
AK300734_1(AK300734|pid:none) Homo sapiens cDNA FLJ60165 complet... 33 5.6
AL050109_1(AL050109|pid:none) Homo sapiens mRNA; cDNA DKFZp586J0... 33 5.6
(Q9UI10) RecName: Full=Translation initiation factor eIF-2B subu... 33 5.6
AE014187_720(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 33 5.6
X75451_1(X75451|pid:none) O.cuniculus mRNA for translation initi... 33 5.6
(P41111) RecName: Full=Translation initiation factor eIF-2B subu... 33 5.6
AF112207_1(AF112207|pid:none) Homo sapiens translation initiatio... 33 5.6
AC115682_1(AC115682|pid:none) Dictyostelium discoideum chromosom... 33 7.3
FM992693_216(FM992693|pid:none) Candida dubliniensis CD36 chromo... 33 9.5

>AB005231_19(AB005231|pid:none) Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone:MBB18.
&AY062523_1(AY062523|pid:none)
&BT008788_1(BT008788|pid:none)
Length = 642

Score = 36.6 bits (83), Expect = 0.66
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +2

Query: 398 KEVAKDGQHGVKQFDDPKQRGXXXXXXXXXVGESSRSVQLFNHLPQYNSEFSMGVSVSTD 577
K+ KD H Q+DD + E+ V+LF HLPQY G +
Sbjct: 252 KDRKKDAPHPRMQYDDESRVVKAKRRAVVKQTEAKNRVELFRHLPQYEH----GTQLPDL 307

Query: 578 EPN--EKYPIHPDIISLGLKY 634
E + P+HP + +GL+Y
Sbjct: 308 ETKFFQLDPMHPAVYKVGLQY 328

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 576,048,350
Number of extensions: 9981516
Number of successful extensions: 47823
Number of sequences better than 10.0: 13
Number of HSP's gapped: 46325
Number of HSP's successfully gapped: 13
Length of query: 217
Length of database: 1,040,966,779
Length adjustment: 123
Effective length of query: 94
Effective length of database: 646,839,724
Effective search space: 60802934056
Effective search space used: 60802934056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.65 gvh: 0.36 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for Contig-U10539-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0