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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10530-1
Contig ID Contig-U10530-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10530-1 (Contig-U10530-1Q) /CSM_Contig/Contig-U10530-1Q.Seq.d
AAAATTCCTTCATATTCACCCACCAAAAACGATACCCCCAATTTGTATAT
ATAAAAATTAAAAATGTCCAAGACAATGATAGAAAAAGTTGATGAAGTTT
TAGAAACAGAAGTTTGTGCAGCAGATCAAAAAATGATCAACCTTTTTGGT
AGATTAAATAATAGAAAACATGAATTAATGAGAGAAAAGAAAGCAAAACA
AGAAGATTTAGAAAAAGCAACAGATTCACAAGATGATTTATTTATTGCAG
ATGATGATTCAAAATTCAAATATTCAATGGGAGAAGCATTTTTAGAAGTT
AATAAAGAAGACGCAGAATCATTGATTGAAAAATATATTAACAAACTTGA
AGAAGATATTAAAAAGATAGATAGCGACATTAATGATATTAATGAAAAAC
ATAAAGAATTAAAAGTTATACTTTATGCTAAATTTAAAAATTCTATAAAT
TTAGAAGAATAAATTAAAAAAAAATAAATTAAAAAAAAAATTTNANAAAA
AA
Gap no gap
Contig length 502
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5046845
End point 5046342
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U10530
List of clone(s) 

est1=VFN626F,1,490
est2=VSJ442F,5,503
est3=VSG583F,14,489
est4=VSJ442Z,14,486
Translated Amino Acid sequence 
kipsysptkndtpnlyi*KLKMSKTMIEKVDEVLETEVCAADQKMINLFGRLNNRKHELM
REKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGEAFLEVNKEDAESLIEKYINKLEEDI
KKIDSDINDINEKHKELKVILYAKFKNSINLEE*ikkk*ikkkixxk
Translated Amino Acid sequence (All Frames) 
Frame A:
kipsysptkndtpnlyi*KLKMSKTMIEKVDEVLETEVCAADQKMINLFGRLNNRKHELM
REKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGEAFLEVNKEDAESLIEKYINKLEEDI
KKIDSDINDINEKHKELKVILYAKFKNSINLEE*ikkk*ikkkixxk


Frame B:
kflhihppktippiciykn*kcprq**kklmkf*kqkfvqqikk*stflvd*iienmn**
ekrkqnkki*kkqqihkmiyllqmmiqnsniqwekhf*klikktqnh*lkniltnlkkil
kr*iatlmilmknikn*klyfmlnlkil*i*knklkknklkkkfxkk


Frame C:
nsfifthqkrypqfvyikiknvqdndrks**sfrnrslcsrskndqpfw*ik**kt*ine
rkesktrrfrksnrftr*fiycr**fkiqifngrsifrs**rrrriid*kiy*qt*rry*
kdr*rh**y**kt*riksytlc*i*kfykfrrin*kkin*kknxxk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10530-1 (Contig-U10530-1Q)
/CSM_Contig/Contig-U10530-1Q.Seq.d
         (502 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10530-1 (Contig-U10530-1Q) /CSM_Contig/Conti...   912  0.0
Contig-U14860-1 (Contig-U14860-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U09118-1 (Contig-U09118-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U06144-1 (Contig-U06144-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U00920-1 (Contig-U00920-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U14686-1 (Contig-U14686-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U14018-1 (Contig-U14018-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U12764-1 (Contig-U12764-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U11309-1 (Contig-U11309-1Q) /CSM_Contig/Conti...    36  0.035

>Contig-U10530-1 (Contig-U10530-1Q) /CSM_Contig/Contig-U10530-1Q.Seq.d
          Length = 502

 Score =  912 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattccttcatattcacccaccaaaaacgatacccccaatttgtatatataaaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaattccttcatattcacccaccaaaaacgatacccccaatttgtatatataaaaatta 60

                                                                       
Query: 61  aaaatgtccaagacaatgatagaaaaagttgatgaagttttagaaacagaagtttgtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaatgtccaagacaatgatagaaaaagttgatgaagttttagaaacagaagtttgtgca 120

                                                                       
Query: 121 gcagatcaaaaaatgatcaacctttttggtagattaaataatagaaaacatgaattaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagatcaaaaaatgatcaacctttttggtagattaaataatagaaaacatgaattaatg 180

                                                                       
Query: 181 agagaaaagaaagcaaaacaagaagatttagaaaaagcaacagattcacaagatgattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agagaaaagaaagcaaaacaagaagatttagaaaaagcaacagattcacaagatgattta 240

                                                                       
Query: 241 tttattgcagatgatgattcaaaattcaaatattcaatgggagaagcatttttagaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttattgcagatgatgattcaaaattcaaatattcaatgggagaagcatttttagaagtt 300

                                                                       
Query: 301 aataaagaagacgcagaatcattgattgaaaaatatattaacaaacttgaagaagatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataaagaagacgcagaatcattgattgaaaaatatattaacaaacttgaagaagatatt 360

                                                                       
Query: 361 aaaaagatagatagcgacattaatgatattaatgaaaaacataaagaattaaaagttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaaagatagatagcgacattaatgatattaatgaaaaacataaagaattaaaagttata 420

                                                   
Query: 421 ctttatgctaaatttaaaaattctataaatttagaagaat 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctttatgctaaatttaaaaattctataaatttagaagaat 460


>Contig-U14860-1 (Contig-U14860-1Q) /CSM_Contig/Contig-U14860-1Q.Seq.d
          Length = 567

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 223 gattcacaagatgatttattta 244
           |||||||||||||||| |||||
Sbjct: 32  gattcacaagatgattnattta 11


>Contig-U09118-1 (Contig-U09118-1Q) /CSM_Contig/Contig-U09118-1Q.Seq.d
          Length = 671

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 199 caagaagatttagaaaaagcaac 221
           |||||||||||||||||| ||||
Sbjct: 523 caagaagatttagaaaaatcaac 545


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,298
Number of Sequences: 6905
Number of extensions: 14298
Number of successful extensions: 1563
Number of sequences better than 10.0: 522
length of query: 502
length of database: 5,674,871
effective HSP length: 16
effective length of query: 486
effective length of database: 5,564,391
effective search space: 2704294026
effective search space used: 2704294026
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.20
Homology vs DNA 
Query= Contig-U10530-1 (Contig-U10530-1Q) /CSM_Contig/Contig-U10530-1Q.Seq.d
         (502 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ417629) Dictyostelium discoideum cDNA clone:ddv28c08, 5' ...   805   0.0    1
(AU269925) Dictyostelium discoideum vegetative cDNA clone:VS...   779   0.0    1
(AU269924) Dictyostelium discoideum vegetative cDNA clone:VS...   769   0.0    1
(AU266643) Dictyostelium discoideum vegetative cDNA clone:VS...   759   0.0    1
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.007  10
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.040  8
(AC181408) Strongylocentrotus purpuratus clone R3-4N24, WORK...    40   0.043  2
(AC176566) Strongylocentrotus purpuratus clone R3-3076L19, W...    38   0.068  4
(AC194249) Zea mays chromosome 6 clone CH201-266B7; ZMMBBc02...    50   0.068  3
(AC177557) Bos taurus clone CH240-259K10, WORKING DRAFT SEQU...    50   0.076  1
(AC166294) Bos taurus clone CH240-179E14, WORKING DRAFT SEQU...    50   0.076  1
(CG116278) PUIGZ05TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    50   0.076  1
(AC113004) Mus musculus chromosome 5, clone RP23-250M13, com...    46   0.12   4
(AC164074) Mus musculus chromosome 5, clone RP23-69E3, compl...    46   0.14   4
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.14   8
(AC216685) Populus trichocarpa clone POP033-J03, complete se...    36   0.18   6
(CU207209) Medicago truncatula chromosome 5 clone mte1-84c7,...    32   0.19   6
(U36927) Plasmodium yoelii rhoptry protein gene, complete cds.     34   0.20   5
(AM445327) Vitis vinifera contig VV78X026220.14, whole genom...    42   0.22   3
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.29   12
(Z82267) Caenorhabditis elegans Cosmid F38C2.                      48   0.30   1
(AC133836) Rattus norvegicus clone CH230-525N7, WORKING DRAF...    48   0.30   1
(AC107431) Rattus norvegicus clone CH230-209N18, WORKING DRA...    48   0.30   1
(AL021573) Caenorhabditis elegans DNA *** SEQUENCING IN PROG...    48   0.30   1
(AC200773) Triticum aestivum clone TAACSPALLhA_0411K13, *** ...    48   0.30   1
(FD663455) TransId-114327 HhtracL2BTEIII Hypothenemus hampei...    48   0.30   1
(AC181486) Strongylocentrotus purpuratus clone R3-1111G12, W...    32   0.35   7
(AE000783) Borrelia burgdorferi B31, complete genome.              34   0.39   11
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.41   6
(AM483084) Vitis vinifera contig VV78X153848.6, whole genome...    40   0.44   3
(AC176526) Strongylocentrotus purpuratus clone R3-3075H12, W...    34   0.45   7
(ER292913) 1092343622079 Global-Ocean-Sampling_GS-34-01-01-1...    36   0.50   2
(L27838) Plasmodium yoelii rhoptry protein, complete cds.          40   0.51   3
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       34   0.52   14
(AC146791) Medicago truncatula chromosome 8 clone mth2-123m1...    42   0.54   3
(CW644143) OA_ABa0181O19.f OA_ABa Oryza australiensis genomi...    34   0.54   3
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.59   10
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   0.65   8
(AC177738) Strongylocentrotus purpuratus clone R3-1008I24, W...    40   0.73   6
(AC219713) Bos taurus clone CH240-325A6, WORKING DRAFT SEQUE...    38   0.74   4
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.74   10
(AM464300) Vitis vinifera contig VV78X150235.9, whole genome...    34   0.75   2
(AC145164) Medicago truncatula clone mth2-27j21, complete se...    30   0.79   7
(AC156288) Mus musculus 6 BAC RP24-246G10 (Roswell Park Canc...    38   0.82   4
(AC174248) Strongylocentrotus purpuratus clone R3-16B16, WOR...    38   0.84   6
(DU958979) 229682 Tomato MboI BAC Library Solanum lycopersic...    36   0.84   2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.90   8
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **...    30   0.92   10
(CP000361) Arcobacter butzleri RM4018, complete genome.            32   0.93   16
(EU642504) Brassica oleracea var. alboglabra clone BoB028L01...    36   0.96   4
(AC188240) Saimiri boliviensis boliviensis clone CH254-136D2...    38   0.98   3
(AC164524) Mus musculus  BAC RP23-438F8 (Roswell Park Cancer...    38   1.00   4
(AC149298) Populus trichocarpa clone Pop1-021H24, complete s...    38   1.2    6
(AC140946) Gallus gallus BAC clone TAM33-20F15 from chromoso...    46   1.2    1
(AP009595) Solanum lycopersicum DNA, chromosome 8, clone: C0...    46   1.2    1
(CS762075) Sequence 30071 from Patent WO2005083127.                46   1.2    1
(CS761803) Sequence 29799 from Patent WO2005083127.                46   1.2    1
(CS741935) Sequence 9931 from Patent WO2005083127.                 46   1.2    1
(AC148533) Homo sapiens 12 BAC RP11-114O21 (Roswell Park Can...    46   1.2    1
(AC134349) Homo sapiens 12 BAC RP11-785H5 (Roswell Park Canc...    46   1.2    1
(AC162168) Mus musculus chromosome 19 clone RP23-1F6 map 19,...    46   1.2    1
(AC141860) Gallus gallus clone TAM31-57D16, WORKING DRAFT SE...    46   1.2    1
(AC079625) Homo sapiens chromosome 12 clone RP11-657D11, WOR...    46   1.2    1
(CU329684) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(AC018851) Homo sapiens clone RP11-114O21, WORKING DRAFT SEQ...    46   1.2    1
(AC018743) Homo sapiens chromosome 12 clone RP11-289M22, WOR...    46   1.2    1
(EJ176336) 1092344101872 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.2    1
(EI043025) hha0010dh06.g1 hha Oryza australiensis genomic cl...    46   1.2    1
(ED883232) OA_CBa0029M18.f OA_CBa Oryza australiensis genomi...    46   1.2    1
(CW356380) fsbb001f021g21f0 Sorghum methylation filtered lib...    46   1.2    1
(BZ330376) hv91g06.g1 WGS-SbicolorF (JM107 adapted methyl fi...    46   1.2    1
(CP000382) Clostridium novyi NT, complete genome.                  46   1.2    1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         46   1.2    1
(CP000395) Borrelia afzelii PKo, complete genome.                  34   1.2    12
(AC180877) Strongylocentrotus purpuratus clone R3-3067O17, W...    32   1.3    5
(AR536218) Sequence 780 from patent US 6737248.                    42   1.4    2
(AR354662) Sequence 780 from patent US 6593114.                    42   1.4    2
(EK249930) 1095460274746 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.4    3
(AB025611) Arabidopsis thaliana genomic DNA, chromosome 5, T...    40   1.5    4
(CL576347) OB__Ba0026F21.r OB__Ba Oryza brachyantha genomic ...    42   1.5    2
(AC216686) Populus trichocarpa clone POP077-C21, complete se...    36   1.5    6
(AC091270) Homo sapiens chromosome 11 clone RP11-115M2 map 1...    36   1.5    4
(CL599912) OB__Ba0066H06.r OB__Ba Oryza brachyantha genomic ...    42   1.6    2
(CL583767) OB__Ba0075P11.r OB__Ba Oryza brachyantha genomic ...    42   1.6    2
(CL537658) OB__Ba0046B13.f OB__Ba Oryza brachyantha genomic ...    42   1.6    2
(AC025054) Homo sapiens chromosome 6 clone RP11-307N19 map 6...    36   1.6    5
(AP008971) Finegoldia magna ATCC 29328 DNA, complete genome.       34   1.7    14
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   1.7    8
(AF159056) Homo sapiens T-cell gamma receptor locus, complet...    38   1.8    4
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   1.8    9
(Z92800) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE...    38   1.8    3
(CL599944) OB__Ba0066I14.r OB__Ba Oryza brachyantha genomic ...    42   1.8    2
(AC177503) Strongylocentrotus purpuratus clone R3-1027K19, W...    34   1.9    4
(CL548653) OB__Ba0084I14.f OB__Ba Oryza brachyantha genomic ...    42   1.9    2
(AC191174) Canis Familiaris chromosome 1, clone XX-493D17, c...    34   1.9    4
(AC108935) Homo sapiens BAC clone RP11-503L19 from 4, comple...    38   1.9    3
(AM435700) Vitis vinifera, whole genome shotgun sequence, co...    38   2.0    3
(CL561603) OB__Ba0020K12.f OB__Ba Oryza brachyantha genomic ...    42   2.0    2
(CU915589) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.0    6
(EK451043) 1095467400861 Global-Ocean-Sampling_GS-32-01-01-1...    42   2.1    2

>(BJ417629) Dictyostelium discoideum cDNA clone:ddv28c08, 5' end,
           single read.
          Length = 490

 Score =  805 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Plus


Query: 1   aaaattccttcatattcacccaccaaaaacgatacccccaatttgtatatataaaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaattccttcatattcacccaccaaaaacgatacccccaatttgtatatataaaaatta 60


Query: 61  aaaatgtccaagacaatgatagaaaaagttgatgaagttttagaaacagaagtttgtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaatgtccaagacaatgatagaaaaagttgatgaagttttagaaacagaagtttgtgca 120


Query: 121 gcagatcaaaaaatgatcaacctttttggtagattaaataatagaaaacatgaattaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagatcaaaaaatgatcaacctttttggtagattaaataatagaaaacatgaattaatg 180


Query: 181 agagaaaagaaagcaaaacaagaagatttagaaaaagcaacagattcacaagatgattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agagaaaagaaagcaaaacaagaagatttagaaaaagcaacagattcacaagatgattta 240


Query: 241 tttattgcagatgatgattcaaaattcaaatattcaatgggagaagcatttttagaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttattgcagatgatgattcaaaattcaaatattcaatgggagaagcatttttagaagtt 300


Query: 301 aataaagaagacgcagaatcattgattgaaaaatatattaacaaacttgaagaagatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataaagaagacgcagaatcattgattgaaaaatatattaacaaacttgaagaagatatt 360


Query: 361 aaaaagatagatagcgacattaatgatattaatgaaaaacataaag 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaaagatagatagcgacattaatgatattaatgaaaaacataaag 406

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 706,345,668
Number of extensions: 53217381
Number of successful extensions: 4882467
Number of sequences better than 10.0: 287
Length of query: 502
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 479
Effective length of database: 93,106,754,628
Effective search space: 44598135466812
Effective search space used: 44598135466812
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.28
Homology vs Protein 
Query= Contig-U10530-1 (Contig-U10530-1Q) /CSM_Contig/Contig-U10530-1Q.Seq.d
         (502 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TB7) RecName: Full=Probable prefoldin subunit 4;                  216   3e-55
AJ251088_1(AJ251088|pid:none) Arabidopsis thaliana partial mRNA ...    76   5e-13
BT065906_1(BT065906|pid:none) Zea mays full-length cDNA clone ZM...    76   5e-13
(Q9M4B5) RecName: Full=Probable prefoldin subunit 4; AltName: Fu...    76   5e-13
CP001327_596(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    76   5e-13
AY085967_1(AY085967|pid:none) Arabidopsis thaliana clone 20276 m...    75   7e-13
AY365418_2(AY365418|pid:none) Epichloe festucae strain 1035.30 c...    72   6e-12
(Q9M4C4) RecName: Full=Probable prefoldin subunit 4; AltName: Fu...    72   7e-12
EF146542_1(EF146542|pid:none) Populus trichocarpa clone WS0119_A...    71   1e-11
AM269987_23(AM269987|pid:none) Aspergillus niger contig An01c040...    70   2e-11
BT079831_1(BT079831|pid:none) Esox lucius clone eluc-evq-511-243...    70   3e-11
BT073369_1(BT073369|pid:none) Oncorhynchus mykiss clone omyk-evn...    69   5e-11
AM920421_96(AM920421|pid:none) Penicillium chrysogenum Wisconsin...    69   6e-11
BT079295_1(BT079295|pid:none) Esox lucius clone eluc-evq-505-317...    69   8e-11
BC154007_1(BC154007|pid:none) Danio rerio hypothetical LOC572231...    67   2e-10
BT082930_1(BT082930|pid:none) Anoplopoma fimbria clone afim-evh-...    66   4e-10
BT082419_1(BT082419|pid:none) Anoplopoma fimbria clone afim-evh-...    65   7e-10
AY892904_1(AY892904|pid:none) Synthetic construct Homo sapiens c...    63   3e-09
(Q9NQP4) RecName: Full=Prefoldin subunit 4; AltName: Full=Protei...    63   3e-09
AK312059_1(AK312059|pid:none) Homo sapiens cDNA, FLJ92340, highl...    63   3e-09
CR382127_59(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...    63   4e-09
BT082946_1(BT082946|pid:none) Anoplopoma fimbria clone afim-evh-...    62   6e-09
AK136249_1(AK136249|pid:none) Mus musculus in vitro fertilized e...    62   8e-09
(Q2TBR6) RecName: Full=Prefoldin subunit 4;  &BC109756_1(BC10975...    62   1e-08
CT009506_1(CT009506|pid:none) Pig DNA sequence from clone CH242-...    62   1e-08
BT078511_1(BT078511|pid:none) Lepeophtheirus salmonis clone lsal...    61   1e-08
CP000593_117(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...    60   2e-08
CR380956_249(CR380956|pid:none) Candida glabrata strain CBS138 c...    60   2e-08
CT005264_84(CT005264|pid:none) Leishmania major strain Friedlin,...    60   4e-08
CU638744_122(CU638744|pid:none) Podospora anserina genomic DNA c...    60   4e-08
DQ214143_1(DQ214143|pid:none) Taeniopygia guttata clone 0058P003...    59   5e-08
DQ214142_1(DQ214142|pid:none) Taeniopygia guttata clone 0061P000...    59   5e-08
AM502243_85(AM502243|pid:none) Leishmania infantum chromosome 25.      57   2e-07
AM494962_70(AM494962|pid:none) Leishmania braziliensis chromosom...    55   9e-07
(P53900) RecName: Full=Prefoldin subunit 4; AltName: Full=Genes ...    54   2e-06
CR382136_147(CR382136|pid:none) Debaryomyces hansenii strain CBS...    53   4e-06
CR382124_460(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    52   6e-06
FN392319_721(FN392319|pid:none) Pichia pastoris GS115 chromosome...    50   4e-05
AM425487_1(AM425487|pid:none) Vitis vinifera contig VV78X090440....    49   5e-05
BT032662_1(BT032662|pid:none) Drosophila melanogaster FI07764 fu...    47   3e-04
AY119195_1(AY119195|pid:none) Drosophila melanogaster SD11994 fu...    47   3e-04
(Q9VRL3) RecName: Full=Probable prefoldin subunit 4;  &AE014296_...    47   3e-04
BT035571_1(BT035571|pid:none) Zea mays full-length cDNA clone ZM...    47   3e-04
FN318517_1(FN318517|pid:none) Schistosoma japonicum isolate Anhu...    43   0.004
(Q17435) RecName: Full=Probable prefoldin subunit 4;  &AF292051_...    43   0.005
(A8X0Z1) RecName: Full=Probable prefoldin subunit 4;                   40   0.031
EZ000434_1(EZ000434|pid:none) TSA: Culex tarsalis Ctar-277 prefo...    39   0.053
A60234(A60234;S14595;A60230) IgA Fc receptor precursor - Strepto...    38   0.15
AB121739_1(AB121739|pid:none) Streptococcus agalactiae cba gene ...    38   0.15
(P27951) RecName: Full=IgA FC receptor; AltName: Full=Beta antig...    38   0.15
FCSOAG(S15330;S20240;S17038)IgA Fc receptor precursor - Streptoc...    38   0.15
AY598359_3(AY598359|pid:none) Streptococcus agalactiae strain 98...    38   0.15
AB221536_3(AB221536|pid:none) Streptococcus agalactiae IS1381-li...    38   0.15
CP000114_132(CP000114|pid:none) Streptococcus agalactiae A909, c...    38   0.15
T47237(T47237) myosin II heavy chain [imported] - Naegleria fowl...    37   0.34
AL954701_2(AL954701|pid:none) Mouse DNA sequence from clone RP23...    35   1.3
FJ205964_1(FJ205964|pid:none) Bovine rotavirus strain KJ142 VP2 ...    34   1.7
CU466930_1507(CU466930|pid:none) Candidatus Cloacamonas acidamin...    34   2.2
(B1NKT8) RecName: Full=Inner capsid protein VP2;  &EF583046_1(EF...    33   2.9
CP000113_5010(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    33   2.9
(O66956) RecName: Full=Uncharacterized protein aq_754;  &A70366(...    33   2.9
(A7J3A3) RecName: Full=Inner capsid protein VP2;  &DQ870498_1(DQ...    33   2.9
CP000792_584(CP000792|pid:none) Campylobacter concisus 13826, co...    33   3.8
AP008971_958(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,...    33   3.8
AJ287449_1(AJ287449|pid:none) Human group A rotavirus partial VP...    33   3.8
(B1NKT0) RecName: Full=Inner capsid protein VP2;  &EF583038_1(EF...    33   3.8
CR382123_156(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    33   3.8
FJ205947_1(FJ205947|pid:none) Bovine rotavirus strain KJ45 VP2 g...    33   3.8
AJ786380_1(AJ786380|pid:none) Cryptosporidium parvum mt1 gene fo...    33   3.8
CU179680_420(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    33   3.8
AF163683_1(AF163683|pid:none) Streptococcus pyogenes strain SS13...    33   4.9
CP000360_2659(CP000360|pid:none) Acidobacteria bacterium Ellin34...    33   4.9
DQ522166_1(DQ522166|pid:none) Streptococcus dysgalactiae subsp. ...    32   6.5
(B1NKR4) RecName: Full=Inner capsid protein VP2;  &EF583022_1(EF...    32   6.5
AK133092_1(AK133092|pid:none) Mus musculus adult male testis cDN...    32   6.5
(Q9D565) RecName: Full=WD repeat-containing protein 64;                32   6.5
AP006628_393(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    32   6.5
FJ407003_1(FJ407003|pid:none) Plasmodium reichenowi isolate CDC-...    32   6.5
FJ807681_1(FJ807681|pid:none) Hordeum vulgare NBS-LRR disease re...    32   6.5
AJ287451_1(AJ287451|pid:none) Human group A rotavirus partial VP...    32   6.5
AJ507088_1(AJ507088|pid:none) Hordeum vulgare partial mRNA for N...    32   6.5
AJ287448_1(AJ287448|pid:none) Human group A rotavirus partial VP...    32   6.5
(B1NKU2) RecName: Full=Inner capsid protein VP2;  &EF583050_1(EF...    32   6.5
FM992692_166(FM992692|pid:none) Candida dubliniensis CD36 chromo...    32   6.5
(Q9QNB2) RecName: Full=Inner capsid protein VP2;  &AB022766_1(AB...    32   8.4
AF494076_1(AF494076|pid:none) Drosophila hydei dynein heavy chai...    32   8.4
DQ494409_1(DQ494409|pid:none) Bovine rotavirus strain KJ44 VP2 (...    32   8.4
FJ205930_1(FJ205930|pid:none) Bovine rotavirus strain KJ11 VP2 g...    32   8.4
AY601118_1(AY601118|pid:none) Porcine rotavirus HP140 VP2 (VP2) ...    32   8.4
AY601115_1(AY601115|pid:none) Human rotavirus RMC321 VP2 (VP2) g...    32   8.4
A48575(A48575)paramyosin - nematode (Onchocerca volvulus)              32   8.4
AC159422_16(AC159422|pid:none) Trypanosoma brucei chromosome 5 c...    32   8.4
CP001056_1591(CP001056|pid:none) Clostridium botulinum B str. Ek...    32   8.4

>(Q54TB7) RecName: Full=Probable prefoldin subunit 4;
          Length = 132

 Score =  216 bits (549), Expect = 3e-55
 Identities = 113/132 (85%), Positives = 113/132 (85%)
 Frame = +1

Query: 64  MSKTMIEKVDEVLETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLF 243
           MSKTMIEKVDEVLETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLF
Sbjct: 1   MSKTMIEKVDEVLETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLF 60

Query: 244 IADDDSKFKYSMGEAFLEVNKEDAESLIEKYINXXXXXXXXXXXXXXXXXXXHKELKVIL 423
           IADDDSKFKYSMGEAFLEVNKEDAESLIEKYIN                   HKELKVIL
Sbjct: 61  IADDDSKFKYSMGEAFLEVNKEDAESLIEKYINKLEEDIKKIDSDINDINEKHKELKVIL 120

Query: 424 YAKFKNSINLEE 459
           YAKFKNSINLEE
Sbjct: 121 YAKFKNSINLEE 132

Lambda     K      H
   0.316    0.133    0.358

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 447,895,740
Number of extensions: 5984381
Number of successful extensions: 23077
Number of sequences better than 10.0: 93
Number of HSP's gapped: 22978
Number of HSP's successfully gapped: 94
Length of query: 167
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 48
Effective length of database: 659,656,864
Effective search space: 31663529472
Effective search space used: 31663529472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.50  gvh: 0.29  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U10530-1 is nuc
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0