| Contig-U01683-1 |
| Contig ID |
Contig-U01683-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
963 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
6410501 |
| End point |
6409581 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
3 |
| Number of EST |
4 |
| Link to clone list |
U01683 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 7 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 5. 3 |
| Homology vs DNA |
Query= Contig-U01683-1 (Contig-U01683-1Q) /CSM_Contig/Contig-U01683-1Q.Seq.d
(973 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 347 0.0 9
(AU052365) Dictyostelium discoideum slug cDNA, clone SLD203. 240 e-105 3
(AU037894) Dictyostelium discoideum slug cDNA, clone SSE428. 167 3e-72 4
(AU072404) Dictyostelium discoideum slug cDNA, clone SSE428. 113 7e-54 3
(C93933) Dictyostelium discoideum slug cDNA, clone SSL879. 157 5e-50 2
(Z92828) Caenorhabditis elegans Cosmid C37A5. 50 0.16 1
(AF468834) Caenorhabditis elegans PRY-1 (pry-1) mRNA, comple... 50 0.16 1
(AL022594) Caenorhabditis elegans DNA *** SEQUENCING IN PROG... 50 0.16 1
(DX326744) OR_ABa0247G13.r OR_ABa Oryza ridleyi genomic clon... 50 0.16 1
(DX226428) OR_ABa0104P02.f OR_ABa Oryza ridleyi genomic clon... 50 0.16 1
(EH216265) USDA-FP_179061 WHMH (pink hibiscus mealybug) Maco... 50 0.16 1
(BJ134088) Caenorhabditis elegans cDNA clone:yk1084e03 : 3' ... 50 0.16 1
(BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen... 50 0.16 1
(EH011525) USDA-FP_184516 Lysiphlebus testaceipes adult whol... 34 0.47 2
(AC119965) Mus musculus clone RP24-471D17, LOW-PASS SEQUENCE... 42 0.50 2
(AC188930) Canis Familiaris chromosome 14, clone XX-451E23, ... 48 0.64 1
(AC138049) Canis lupus familiaris clone RP81-287P13, WORKING... 48 0.64 1
(AC231248) Choloepus hoffmanni clone CH281-569H2, WORKING DR... 48 0.64 1
(AC231245) Choloepus hoffmanni clone CH281-167B20, WORKING D... 48 0.64 1
(DH387578) Oryzias latipes Fosmid clone:GOLWFno771_p23, reve... 48 0.64 1
(EK498461) 1095505197467 Global-Ocean-Sampling_GS-32-01-01-1... 38 1.1 3
(AC006721) Caenorhabditis elegans clone Y18H1, *** SEQUENCIN... 46 1.7 4
(EF428139) Theileria sp. China 1 clone T123 unknown mRNA. 34 1.8 3
(AC169038) Mus musculus BAC clone RP23-31H24 from chromosome... 46 2.5 1
(AC120153) Mus musculus chromosome 14, clone RP24-251C20, co... 46 2.5 1
(AC193868) Pan troglodytes BAC clone CH251-583C24 from chrom... 46 2.5 1
(AC190154) Pongo abelii chromosome UNK clone CH276-102H12, c... 46 2.5 1
(AM472465) Vitis vinifera contig VV78X008604.10, whole genom... 46 2.5 1
(AC187862) Populus trichocarpa clone Pop1-1L5, complete sequ... 46 2.5 1
(AY254474) Dictyostelium discoideum RpkA (rpkA) gene, comple... 46 2.5 1
(AC024751) Caenorhabditis elegans cosmid Y18H1A, complete se... 46 2.5 1
(AL603869) Human DNA sequence from clone RP11-202P3 on chrom... 46 2.5 1
(AC008120) Homo sapiens 3q27 BAC RP11-477P16 (Roswell Park C... 46 2.5 1
(CU019671) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.5 1
(AL844507) Plasmodium falciparum chromosome 8. 46 2.5 1
(AC230408) Bos taurus clone CH240-510F6, WORKING DRAFT SEQUE... 46 2.5 1
(AC163866) Bos taurus clone CH240-143E2, *** SEQUENCING IN P... 46 2.5 1
(FH367751) CHO_OF4502xn05r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.5 1
(FH367673) CHO_OF4502xn05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.5 1
(DX992979) CHORI103-15G15.TJ.1 CHORI103 Schistosoma mansoni ... 46 2.5 1
(DX992978) CHORI103-15G15.TJ CHORI103 Schistosoma mansoni ge... 46 2.5 1
(DX217243) OR_ABa0092E18.f OR_ABa Oryza ridleyi genomic clon... 46 2.5 1
(DH411846) Oryzias latipes Fosmid clone:GOLWFno818_c20, reve... 46 2.5 1
(AU216944) Caenorhabditis elegans cDNA clone:yk844a02 : 3' e... 46 2.5 1
(AJ928953) Theileria annulata EST, clone tam024f09_p1k. 46 2.5 1
(C24334) Dictyostelium discoideum gamete cDNA, clone FC-AR24. 46 2.5 1
(BJ816164) Caenorhabditis elegans cDNA clone:yk1563b08 : 3' ... 46 2.5 1
(BJ794842) Caenorhabditis elegans cDNA clone:yk1704h08 : 3' ... 46 2.5 1
(BJ792801) Caenorhabditis elegans cDNA clone:yk1668g12 : 3' ... 46 2.5 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 3.9 2
(AC152399) Mus musculus chromosome 3 clone RP23-21M14 map 3,... 40 3.9 4
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 40 4.5 2
(FJ269356) Helianthus annuus cultivar HA383 (PI 5788720) clo... 32 4.9 2
(AJ307410) Yarrowia lipolytica complete mitochondrial genome. 34 5.2 2
(AE001399) Plasmodium falciparum 3D7 chromosome 2 section 36... 32 5.6 2
(BB663337) Mus musculus 15 days embryo head cDNA, RIKEN full... 38 6.1 2
(AL413370) T3 end of clone AW0AA024B02 of library AW0AA from... 34 6.4 2
(BU496909) PfESToab60e08.y1 Plasmodium falciparum 3D7 asexua... 32 6.5 2
(BQ452326) PfESToaa95c04.y1 Plasmodium falciparum 3D7 asexua... 32 6.5 2
(BQ595984) PfESToab27f12.y1 Plasmodium falciparum 3D7 asexua... 32 6.5 2
(BI814360) PfESToaa21f09.y1 Plasmodium falciparum 3D7 asexua... 32 6.5 2
(AL414819) T7 end of clone XAW0AA002E05 of library XAW0AA fr... 34 6.6 2
(AL410806) T7 end of clone AW0AA007A02 of library AW0AA from... 34 6.6 2
(BU498320) PfESToab95f12.y1 Plasmodium falciparum 3D7 asexua... 32 6.6 2
(AL410894) T7 end of clone AW0AA007E11 of library AW0AA from... 34 6.6 2
(AC106556) Rattus norvegicus clone CH230-152N1, *** SEQUENCI... 42 6.7 6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 6.7 11
(AC230738) Bos taurus clone CH240-500J24, WORKING DRAFT SEQU... 36 7.5 3
(AC098438) Rattus norvegicus clone CH230-2J6, *** SEQUENCING... 42 8.8 3
(AC152166) Mus musculus BAC clone RP23-425A3 from chromosome... 44 10.0 1
(AM444420) Vitis vinifera contig VV78X085343.4, whole genome... 44 10.0 1
(AC142012) Rattus norvegicus clone CH230-298L4, WORKING DRAF... 44 10.0 1
(AC141390) Rattus norvegicus clone CH230-40I18, WORKING DRAF... 44 10.0 1
(AC130115) Rattus norvegicus clone CH230-196B2, *** SEQUENCI... 44 10.0 1
(AC115669) Rattus norvegicus clone CH230-32M20, WORKING DRAF... 44 10.0 1
(AC095118) Rattus norvegicus clone CH230-7L18, WORKING DRAFT... 44 10.0 1
(CU468531) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 10.0 1
(AC231587) Monodelphis domestica clone VMRC18-711P21, WORKIN... 44 10.0 1
(AC229614) Lama pacos clone CH246-161K8, WORKING DRAFT SEQUE... 44 10.0 1
(AC212828) Zea mays chromosome 5 clone CH201-228P21; ZMMBBc0... 44 10.0 1
(AC200976) Strongylocentrotus purpuratus clone R3-115J9, WOR... 44 10.0 1
(AC177289) Strongylocentrotus purpuratus clone R3-1033F3, WO... 44 10.0 1
(AC176008) Strongylocentrotus purpuratus clone R3-17M22, WOR... 44 10.0 1
(FH517788) CHO_OF4154xi06f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 10.0 1
(FH459434) CHO_OF4930xi23r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 10.0 1
(FH250995) CHO_OF3198xe15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 10.0 1
(FH057657) CHO_OF3487xe17f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 10.0 1
(EK359956) 1095468915428 Global-Ocean-Sampling_GS-31-01-01-1... 44 10.0 1
(EK354291) 1095468413964 Global-Ocean-Sampling_GS-31-01-01-1... 44 10.0 1
(EK083717) 1092961126789 Global-Ocean-Sampling_GS-31-01-01-1... 44 10.0 1
(EJ428181) 1093015239178 Global-Ocean-Sampling_GS-28-01-01-1... 44 10.0 1
(EJ253046) 1095347001267 Global-Ocean-Sampling_GS-27-01-01-1... 44 10.0 1
(EJ064152) 1095458019674 Global-Ocean-Sampling_GS-26-01-01-1... 44 10.0 1
(DX452985) MAMAG77TF MA4 Musa acuminata genomic clone MA4-5M... 44 10.0 1
(DH827862) Rattus norvegicus DNA, BAC clone: RNB1-434C01, 5'... 44 10.0 1
(DH702067) Rattus norvegicus DNA, BAC clone: RNB1-262K01, 3'... 44 10.0 1
(DE465301) Bombyx mori genomic DNA, Fosmid clone:GBMFno63_h0... 44 10.0 1
(DE074514) Oryzias latipes DNA, clone: ola1-177E08.F, genomi... 44 10.0 1
(CL018930) CH216-4F5_RM1.1 CH216 Xenopus (Silurana) tropical... 44 10.0 1
(DT736027) EST1169876 Aquilegia cDNA library Aquilegia formo... 44 10.0 1
(CD792314) EST663675 RAB Rhipicephalus appendiculatus cDNA c... 44 10.0 1
(CD179574) MS1-0018T-R188-G09-U.G MS1-0018 Schistosoma manso... 44 10.0 1
(CB406804) OSTR079G4_1 AD-wrmcDNA Caenorhabditis elegans cDN... 44 10.0 1
(BQ544160) EST627787 TpMugugaSh01 Theileria parva cDNA clone... 44 10.0 1
(FK257883) USDA-FP_193846 Asian citrus psyllid midgut (Hemip... 44 10.0 1
(FG637029) TT-23_P18 Samsun trichome library Nicotiana tabac... 44 10.0 1
(FE415087) CBTU895.fwd CBTU_Daphnia_pulex_Chosen_One_Library... 44 10.0 1
(FE415086) CBTU895.rev CBTU_Daphnia_pulex_Chosen_One_Library... 44 10.0 1
(FE412248) CBTU3051.fwd CBTU_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE412247) CBTU3051.rev CBTU_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE386066) CBNT4281.fwd CBNT_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE386065) CBNT4281.rev CBNT_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE358918) CBNN17657.fwd CBNN_Daphnia_pulex_Chosen_One_Libra... 44 10.0 1
(FE358917) CBNN17657.rev CBNN_Daphnia_pulex_Chosen_One_Libra... 44 10.0 1
(FE349134) CBIB8255.fwd CBIB_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE347092) CBIB7004.fwd CBIB_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE346892) CBIB6887.fwd CBIB_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE346891) CBIB6887.rev CBIB_Daphnia_pulex_Chosen_One_Librar... 44 10.0 1
(FE315557) CANW1651.fwd CANW_Daphnia_pulex_Log50_Library_6 D... 44 10.0 1
(FE315556) CANW1651.rev CANW_Daphnia_pulex_Log50_Library_6 D... 44 10.0 1
(FE300976) CANP1988.fwd CANP_Daphnia_pulex_Log50_Library_2 D... 44 10.0 1
(FE300975) CANP1988.rev CANP_Daphnia_pulex_Log50_Library_2 D... 44 10.0 1
(FE298173) CANO2356.fwd CANO_Daphnia_pulex_Log50_Library_1 D... 44 10.0 1
(FE298172) CANO2356.rev CANO_Daphnia_pulex_Log50_Library_1 D... 44 10.0 1
(FE288442) CANH4761.fwd CANH_Daphnia_pulex_Log50_Library_21 ... 44 10.0 1
(FE288441) CANH4761.rev CANH_Daphnia_pulex_Log50_Library_21 ... 44 10.0 1
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g... 44 10.0 1
>(AC116979) Dictyostelium discoideum chromosome 2 map 6445720-6776760
strain AX4, complete sequence.
Length = 331039
Score = 347 bits (175), Expect(9) = 0.0
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 210 tttaatgctaatactatagatcaagcaaatggtgcaagttctgctgataatagtaataaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117828 tttaatgctaatactatagatcaagcaaatggtgcaagttctgctgataatagtaataaa 117887
Query: 270 gaaaataatataaattcatcaaataattctacttattccaatagctcatttagtggtaat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117888 gaaaataatataaattcatcaaataattctacttattccaatagctcatttagtggtaat 117947
Query: 330 agtattacttcaactccaacatcaaatacaaatgcacctataacaaattctcaac 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117948 agtattacttcaactccaacatcaaatacaaatgcacctataacaaattctcaac 118002
Score = 172 bits (87), Expect(9) = 0.0
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 613 tgtagcaatgcaagttgaattctatagagaagcactcgaaaattgggaagaatttgctga 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118876 tgtagcaatgcaagttgaattctatagagaagcactcgaaaattgggaagaatttgctga 118935
Query: 673 agaaatggatgaaattatacctccaac 699
|||||||||||||||||||||||||||
Sbjct: 118936 agaaatggatgaaattatacctccaac 118962
Score = 133 bits (67), Expect(9) = 0.0
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 396 aaacaaaatttaattagaattagatatgaacaatcacaatcaaatttagttgatgtaaag 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118658 aaacaaaatttaattagaattagatatgaacaatcacaatcaaatttagttgatgtaaag 118717
Query: 456 aaaaaga 462
|||||||
Sbjct: 118718 aaaaaga 118724
Score = 113 bits (57), Expect(9) = 0.0
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 62 ggcaacaactcaatatttagatagagaaagatctaaatcagtttcatatgatcattc 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117482 ggcaacaactcaatatttagatagagaaagatctaaatcagtttcatatgatcattc 117538
Score = 107 bits (54), Expect(9) = 0.0
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 462 atgatacatttgcaaataaaacacttcaagcaaaatcggatgaagaggagtgta 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118725 atgatacatttgcaaataaaacacttcaagcaaaatcggatgaagaggagtgta 118778
Score = 58.0 bits (29), Expect(9) = 0.0
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 931 tattnttggaaattgatttttccaataatttc 962
|||| |||||||||||||||||||||||||||
Sbjct: 119194 tattcttggaaattgatttttccaataatttc 119225
Score = 48.1 bits (24), Expect(9) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 127 gtatttcttcagatgattatatac 150
||||||||||||||||||||||||
Sbjct: 117547 gtatttcttcagatgattatatac 117570
Score = 40.1 bits (20), Expect(9) = 0.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 190 tgagtagtagtggtagtaat 209
||||||||||||||||||||
Sbjct: 117610 tgagtagtagtggtagtaat 117629
Score = 30.2 bits (15), Expect(9) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 791 ttattagctgatctt 805
|||||||||||||||
Sbjct: 119054 ttattagctgatctt 119068
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 719,898,361
Number of extensions: 45857052
Number of successful extensions: 3872800
Number of sequences better than 10.0: 128
Length of query: 973
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 949
Effective length of database: 99,340,224,878
Effective search space: 94273873409222
Effective search space used: 94273873409222
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.18 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
2 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |