Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U10505-1 (Contig-U10505-1Q) /CSM_Contig/Contig-U10505-1Q.Seq.d (119 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ416650) Dictyostelium discoideum cDNA clone:ddv26h04, 5' ... 198 3e-47 1 (AW639555) bl84d02.w1 Blackshear/Soares normalized Xenopus e... 50 0.015 1 (EJ144502) 1092343681470 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.061 1 (CJ452196) Macaca fascicularis mRNA, clone: QflA-17842, 5' e... 42 0.088 2 (CU469200) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.092 4 (AC169964) Bos taurus clone CH240-220O15, WORKING DRAFT SEQU... 38 0.14 4 (AC172259) Bos taurus clone CH240-510G23, WORKING DRAFT SEQU... 34 0.14 2 (AM437317) Vitis vinifera contig VV78X122307.2, whole genome... 36 0.20 3 (AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 46 0.24 1 (AC117161) Rattus norvegicus clone CH230-306P15, *** SEQUENC... 46 0.24 1 (AC111543) Rattus norvegicus clone CH230-160P18, *** SEQUENC... 46 0.24 1 (AC106439) Rattus norvegicus clone CH230-193N22, WORKING DRA... 46 0.24 1 (AC232106) Solanum tuberosum strain Diploid genotype RH89-03... 46 0.24 1 (DH816918) Rattus norvegicus DNA, BAC clone: RNB1-419E05, 3'... 46 0.24 1 (BQ452419) PfESToaa96d11.y1 Plasmodium falciparum 3D7 asexua... 46 0.24 1 (BJ344788) Dictyostelium discoideum cDNA clone:dda20b17, 3' ... 46 0.24 1 (DN785513) 92941369 Sea Urchin primary mesenchyme cell cDNA ... 38 0.43 2 (AP000967) Homo sapiens genomic DNA, chromosome 21q21.1-q21.... 38 0.47 3 (AM486925) Vitis vinifera contig VV78X030902.11, whole genom... 34 0.49 3 (DX561564) GH_MBb0073G03r GH_MBb Gossypium hirsutum genomic ... 34 0.67 2 (U80451) Caenorhabditis elegans cosmid F11G11, complete sequ... 38 0.77 2 (AC182890) Bos taurus clone CH240-526L24, WORKING DRAFT SEQU... 42 0.83 2 (AF200465) Homo sapiens coxsackievirus and adenovirus recept... 38 0.91 3 (BV373202) S231P6407RA7.T0 BedlingtonTerrier Canis familiari... 38 0.94 2 (BV518614) tbk44c12.b1 Clint Pan troglodytes verus STS genom... 44 0.96 1 (AC157322) Mus musculus chromosome 19, clone RP23-241E11, co... 44 0.96 1 (AC148006) Mus musculus BAC clone RP23-298P21 from chromosom... 44 0.96 1 (AC122848) Mus musculus BAC clone RP23-166K13 from chromosom... 44 0.96 1 (AC121935) Mus musculus BAC clone RP24-207G22 from chromosom... 44 0.96 1 (AM463961) Vitis vinifera, whole genome shotgun sequence, co... 44 0.96 1 (AF501611) Parietaria pensylvanica chloroplast trnL gene, pa... 44 0.96 1 (CQ329031) Sequence 3125 from Patent WO0157275. 44 0.96 1 (CQ291984) Sequence 3089 from Patent WO0186003. 44 0.96 1 (CQ254901) Sequence 3162 from Patent WO0157277. 44 0.96 1 (CQ216334) Sequence 3173 from Patent WO0157273. 44 0.96 1 (CQ200828) Sequence 3105 from Patent WO0157271. 44 0.96 1 (CQ171693) Sequence 3089 from Patent WO0157274. 44 0.96 1 (CQ133123) Sequence 3145 from Patent WO0157276. 44 0.96 1 (CQ094339) Sequence 3198 from Patent WO0157272. 44 0.96 1 (CQ067292) Sequence 3092 from Patent WO0157278. 44 0.96 1 (CQ052235) Sequence 3055 from Patent WO0157270. 44 0.96 1 (AC011451) Homo sapiens chromosome 19 clone CTC-325H20, comp... 44 0.96 1 (AC115167) Rattus norvegicus clone CH230-160B10, *** SEQUENC... 44 0.96 1 (AC100196) Mus musculus clone RP23-58A22, LOW-PASS SEQUENCE ... 44 0.96 1 (AC231459) Choloepus hoffmanni clone CH281-136C10, WORKING D... 44 0.96 1 (AC192209) Pan troglodytes chromosome 19 clone CH251-16L14, ... 44 0.96 1 (AC191960) Glyptapanteles indiensis clone 18I8 and 20D14, **... 44 0.96 1 (BH557967) BOGOM22TR BOGO Brassica oleracea genomic clone BO... 44 0.96 1 (BH547674) BOGRN50TR BOGR Brassica oleracea genomic clone BO... 44 0.96 1 (AQ588673) CITBI-E1-2643E16.TF CITBI-E1 Homo sapiens genomic... 44 0.96 1 (EJ763712) 1092963160368 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.96 1 (EJ750643) 1092963032309 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.96 1 (EJ143199) 1092343668750 Global-Ocean-Sampling_GS-27-01-01-1... 44 0.96 1 (CR148437) Reverse strand read from insert in 5'HPRT inserti... 44 0.96 1 (CR060011) Reverse strand read from insert in 5'HPRT inserti... 44 0.96 1 (AM478890) Vitis vinifera contig VV78X072460.8, whole genome... 34 1.2 3 (DQ983239) Vaccinia virus strain AGR-MVA-572pre genomic sequ... 42 1.2 4 (DQ983238) Vaccinia virus strain MVA-BN genomic sequence. 42 1.2 4 (DQ983237) Vaccinia virus strain MVA-572 genomic sequence. 42 1.2 4 (DQ983236) Vaccinia virus strain MVA-I721 genomic sequence. 42 1.2 4 (EF675191) Vaccinia virus strain MVATGN33.1 Modified Virus A... 42 1.2 4 (AY603355) Vaccinia virus strain Acambis 3000 Modified Virus... 42 1.2 4 (AC219527) Bos taurus clone CH240-331E7, WORKING DRAFT SEQUE... 38 1.2 3 (U94848) Vaccinia virus strain Ankara, complete genomic sequ... 42 1.4 4 (EU637017) Adineta vaga glycoprotein gene, partial cds; and ... 34 1.4 4 (AC104350) Homo sapiens chromosome 8, clone RP11-1112C15, co... 36 1.5 5 (AX344555) Sequence 6 from Patent WO0200932. 36 1.7 7 (CZ954667) 268320 Tomato EcoRI BAC Library Solanum lycopersi... 34 1.7 2 (AY678276) Vaccinia virus strain Lister, complete genome. 42 1.7 4 (AY678277) Vaccinia virus strain LC16mO, complete genome. 42 1.7 4 (AY678275) Vaccinia virus strain LC16m8, complete genome. 42 1.7 4 (AF095689) Vaccinia virus (strain Tian Tan) complete genome. 42 1.7 4 (DQ121394) Vaccinia virus strain Lister clone VACV107, compl... 42 1.7 4 (M35027) Vaccinia virus Copenhagen, complete genome. 42 1.7 4 (AM501482) Vaccinia virus complete viral coding region, stra... 42 1.7 4 (AC204137) Xenopus (Silurana) tropicalis clone ISB1-172G5, W... 36 1.8 2 (AY313848) Vaccinia virus strain Acambis clone 3, complete g... 42 1.9 4 (DJ328696) Microorganisms for Therapy. 42 1.9 3 (DD464435) Microorganisms for Therapy. 42 1.9 3 (CS106434) Sequence 34 from Patent WO2005047458. 42 1.9 3 (AC132553) Rattus norvegicus clone CH230-196F6, *** SEQUENCI... 34 1.9 2 (AP001533) Homo sapiens genomic DNA, chromosome 11q clone:RP... 32 1.9 2 (DQ377945) Vaccinia virus strain 3737, complete genome. 42 1.9 4 (DQ439815) Vaccinia virus strain DUKE, complete genome. 42 1.9 4 (AP001316) Homo sapiens genomic DNA, chromosome 11q22 clone:... 32 1.9 2 (AP001919) Homo sapiens genomic DNA, chromosome 11q clone:CT... 32 1.9 2 (AP000625) Homo sapiens genomic DNA, chromosome 11q22 clone:... 32 2.0 2 (AY525610) Homo sapiens progesterone receptor (PGR) gene, co... 32 2.0 2 (CS538693) Sequence 70 from Patent EP1772521. 32 2.0 2 (AY243312) Vaccinia virus WR, complete genome. 42 2.0 3 (AY484669) Rabbitpox virus, complete genome. 42 2.1 3 (AY313847) Vaccinia virus strain Acambis clone 2000, complet... 42 2.1 3 (EU275726) Polysphondylium pallidum strain PN500 mitochondri... 36 2.2 3 (DQ792504) Horsepox virus isolate MNR-76, complete genome. 42 2.2 4 (Z49816) H.sapiens partial gene for progesterone receptor an... 32 2.5 2 (DN915415) MCF7RNAL20B15TF Human MCF7 breast cancer cell lin... 32 2.6 2 (AY722926) Borrelia garinii PBi variable plasmid segment G1a... 36 2.7 2 (AC147428) Medicago truncatula clone mth2-34i10, complete se... 42 2.7 3 (AC139591) Rattus norvegicus clone CH230-19A23, WORKING DRAF... 42 2.9 2 (U80030) Caenorhabditis elegans cosmid K12D9, complete seque... 40 3.0 2
>(BJ416650) Dictyostelium discoideum cDNA clone:ddv26h04, 5' end, single read. Length = 110
Score = 198 bits (100), Expect = 3e-47 Identities = 100/100 (100%) Strand = Plus / Plus
Query: 1 attttcattttcaatcaataacttttttcttcgttttatcatcataaccccactcctcaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attttcattttcaatcaataacttttttcttcgttttatcatcataaccccactcctcaa 60
Query: 61 atattcttttaattttaaaagaaatcatatatagaaggat 100 |||||||||||||||||||||||||||||||||||||||| Sbjct: 61 atattcttttaattttaaaagaaatcatatatagaaggat 100
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 193,202,062 Number of extensions: 14411645 Number of successful extensions: 4461124 Number of sequences better than 10.0: 248 Length of query: 119 Length of database: 95,242,211,685 Length adjustment: 22 Effective length of query: 97 Effective length of database: 93,199,600,587 Effective search space: 9040361256939 Effective search space used: 9040361256939 X1: 11 (21.8 bits) S2: 20 (40.1 bits)
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Homology vs Protein |
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