Contig-U10495-1 |
Contig ID |
Contig-U10495-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
701 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
563487 |
End point |
564179 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U10495 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.20 |
Homology vs DNA |
Query= Contig-U10495-1 (Contig-U10495-1Q) /CSM_Contig/Contig-U10495-1Q.Seq.d (701 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ434940) Dictyostelium discoideum cDNA clone:ddv25b14, 3' ... 1239 0.0 1 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 1223 0.0 1 (EL415583) CHCL4244.b1_G05.ab1 CHC(LMS) Texas blueweed Helia... 50 0.11 1 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 0.21 12 (AC115298) Mus musculus BAC clone RP23-224G24 from X, comple... 46 0.22 3 (AC123755) Mus musculus clone RP24-228O15, WORKING DRAFT SEQ... 46 0.27 4 (EK524134) 1095515636031 Global-Ocean-Sampling_GS-32-01-01-1... 46 0.31 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 48 0.45 1 (DU092848) 104335 Tomato HindIII BAC Library Solanum lycoper... 34 0.56 3 (AC174547) Strongylocentrotus purpuratus clone R3-3112O6, WO... 38 0.61 5 (EJ008236) 1095403499576 Global-Ocean-Sampling_GS-26-01-01-1... 40 1.2 2 (AC160216) Atelerix albiventris clone LB4-351P23, WORKING DR... 46 1.8 1 (AC166311) Atelerix albiventris clone LB4-458C5, WORKING DRA... 46 1.8 1 (EK036973) 1092959470620 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.8 1 (FG404809) 000723KAAA003023HT (KAAA) A. deliciosa developing... 46 1.8 1 (FG073402) UI-FF-IF0-abf-d-10-0-UI.r1 Ceratitis capitata emb... 46 1.8 1 (AC106210) Rattus norvegicus clone CH230-41D22, *** SEQUENCI... 38 1.8 4 (AL953908) Zebrafish DNA sequence from clone CH211-202A12 in... 34 2.0 6 (AC192724) Pan troglodytes BAC clone CH251-616N11 from chrom... 32 3.4 2 (CT574568) Pan troglodytes chromosome X clone PTB-081L12 map... 32 3.4 2 (AC192855) Pan troglodytes BAC clone CH251-330K8 from chromo... 32 3.4 2 (CT841527) Pan troglodytes chromosome X clone CH251-168G12 m... 32 3.4 2 (AC006054) Homo sapiens Xq28 BAC GS1-382P7 (Roswell Park Can... 32 3.5 2 (DU060535) 40280 Tomato HindIII BAC Library Solanum lycopers... 32 5.9 3 (AP005408) Oryza sativa Japonica Group genomic DNA, chromoso... 36 6.8 4 (DQ772304) Synthetic construct Yersinia pestis clone FLH0138... 44 7.0 1 (AC153932) Mus musculus 10 BAC RP24-266J23 (Roswell Park Can... 44 7.0 1 (AC162671) Bos taurus clone CH240-116O2, WORKING DRAFT SEQUE... 44 7.0 1 (AC113101) Mus musculus clone RP23-318N14, LOW-PASS SEQUENCE... 44 7.0 1 (AC184466) Strongylocentrotus purpuratus clone R3-3039I16, W... 44 7.0 1 (AC180291) Strongylocentrotus purpuratus clone R3-3123C22, W... 44 7.0 1 (AC179483) Strongylocentrotus purpuratus clone R3-1035N16, W... 44 7.0 1 (AY760475) RP41-10j22 TJ Papio anubis genomic DNA Papio anub... 44 7.0 1 (EK447364) 1095467052740 Global-Ocean-Sampling_GS-32-01-01-1... 44 7.0 1 (EI245499) OR__Ba0046C04.f OR__Ba Oryza rufipogon genomic cl... 44 7.0 1 (DH147672) Oryzias latipes Fosmid clone:GOLWFno414_m01, forw... 44 7.0 1 (DT764240) EST1198089 Aquilegia cDNA library Aquilegia formo... 44 7.0 1 (DT739350) EST1173199 Aquilegia cDNA library Aquilegia formo... 44 7.0 1 (DR922620) EST1114159 Aquilegia cDNA library Aquilegia formo... 44 7.0 1 (BU777581) SJEDLG08 SJE Schistosoma japonicum cDNA, mRNA seq... 44 7.0 1 (BM023803) fu69c07.x1 zebrafish adult brain Danio rerio cDNA... 44 7.0 1 (FE251598) CAPH3540.fwd CAPH Naegleria gruberi amoeba stage ... 44 7.0 1 (FE251597) CAPH3540.rev CAPH Naegleria gruberi amoeba stage ... 44 7.0 1 (FE239952) CAPG5617.rev CAPG Naegleria gruberi amoeba stage ... 44 7.0 1 (FE231376) CAPG1187.rev CAPG Naegleria gruberi amoeba stage ... 44 7.0 1 (EX501701) TPAF-aac10g08.g1 T.spiralis_EST Trichinella spira... 44 7.0 1 (EV372347) EST_eluc_bkhp_721363 elucbkhp mixed_tissue Esox l... 44 7.0 1 (EV372346) EST_eluc_bkhp_720979 elucbkhp mixed_tissue Esox l... 44 7.0 1 (CP000950) Yersinia pseudotuberculosis YPIII, complete genome. 44 7.0 1 (CP000901) Yersinia pestis Angola, complete genome. 44 7.0 1 (CP000720) Yersinia pseudotuberculosis IP 31758, complete ge... 44 7.0 1 (CP000668) Yersinia pestis Pestoides F, complete genome. 44 7.0 1 (CP000308) Yersinia pestis Antiqua, complete genome. 44 7.0 1 (CP000305) Yersinia pestis Nepal516, complete genome. 44 7.0 1 (BX936398) Yersinia pseudotuberculosis IP32953 genome, compl... 44 7.0 1 (AL590842) Yersinia pestis CO92 complete genome. 44 7.0 1 (AE017042) Yersinia pestis biovar Microtus str. 91001, compl... 44 7.0 1 (AE009952) Yersinia pestis KIM, complete genome. 44 7.0 1 (AC171141) Helobdella robusta clone CH306-1B3, complete sequ... 42 7.2 4 (AC212433) Solanum lycopersicum chromosome 11 clone C11HBa00... 36 9.5 4
>(BJ434940) Dictyostelium discoideum cDNA clone:ddv25b14, 3' end, single read. Length = 692
Score = 1239 bits (625), Expect = 0.0 Identities = 625/625 (100%) Strand = Plus / Minus
Query: 11 atcgttcaaaaacaacaaggtgttttccgtacgaattgtatcgataatttagacagaacc 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 atcgttcaaaaacaacaaggtgttttccgtacgaattgtatcgataatttagacagaacc 633
Query: 71 aatgtagtgcaatctttaatcactcgtcactccttggagaaccaaatggcaagtgtattg 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 aatgtagtgcaatctttaatcactcgtcactccttggagaaccaaatggcaagtgtattg 573
Query: 131 aataaacaaatcccatcaaccactttcaaaggcgaccagtttgagtatgtatttaagaat 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 aataaacaaatcccatcaaccactttcaaaggcgaccagtttgagtatgtatttaagaat 513
Query: 191 atctgggccgaccatggtgatgctatctccactcaatactctggcactggcgcattaaag 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 atctgggccgaccatggtgatgctatctccactcaatactctggcactggcgcattaaag 453
Query: 251 aatgatttcactcgtactggtaaaagaaatttccaaggtgtacttagagatggtgaaaat 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 aatgatttcactcgtactggtaaaagaaatttccaaggtgtacttagagatggtgaaaat 393
Query: 311 tcagttaaaagatattatttaaataactttaaagatggtttccgtcaagatagttacttt 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 tcagttaaaagatattatttaaataactttaaagatggtttccgtcaagatagttacttt 333
Query: 371 ttattcacaaatccatcagttgatttaaccactgctaaacaacatgaatcaaaaccaccc 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 ttattcacaaatccatcagttgatttaaccactgctaaacaacatgaatcaaaaccaccc 273
Query: 431 tcacctctaatttggatcttttcatttgtatttgctgctatctttttagcaaatttatat 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 tcacctctaatttggatcttttcatttgtatttgctgctatctttttagcaaatttatat 213
Query: 491 ctcccttctgctacttcatcaattggtggtttcatttctcaaactaccgttttagttggt 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 ctcccttctgctacttcatcaattggtggtttcatttctcaaactaccgttttagttggt 153
Query: 551 tcagttttctttgctcttaaattagctatgaaatatcaagcttcaatagttgataaacca 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 tcagttttctttgctcttaaattagctatgaaatatcaagcttcaatagttgataaacca 93
Query: 611 actttatttaaattagattcaattt 635 ||||||||||||||||||||||||| Sbjct: 92 actttatttaaattagattcaattt 68
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 823,745,919 Number of extensions: 78845580 Number of successful extensions: 4097100 Number of sequences better than 10.0: 62 Length of query: 701 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 677 Effective length of database: 97,308,875,965 Effective search space: 65878109028305 Effective search space used: 65878109028305 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.28 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |