| Contig-U10482-1 |
| Contig ID |
Contig-U10482-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
569 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
6477972 |
| End point |
6478531 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U10482 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.20 |
| Homology vs DNA |
Query= Contig-U10482-1 (Contig-U10482-1Q) /CSM_Contig/Contig-U10482-1Q.Seq.d
(569 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ434815) Dictyostelium discoideum cDNA clone:ddv25e05, 3' ... 581 0.0 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 573 0.0 2
(CR382133) Debaryomyces hansenii chromosome A of strain CBS7... 54 0.006 1
(FK182026) XABT199723.b1 Gateway compatible cien cDNA librar... 44 0.59 2
(AM467513) Vitis vinifera contig VV78X053760.8, whole genome... 46 1.4 1
(AC145788) Xenopus tropicalis clone CH216-119F22, WORKING DR... 46 1.4 1
(AL844506) Plasmodium falciparum chromosome 7. 46 1.4 1
(AC219143) Monodelphis domestica clone VMRC6-348K23, WORKING... 46 1.4 1
(EI827943) POTFB77TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.4 1
(EI827294) POTIY06TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.4 1
(DU955190) 226232 Tomato MboI BAC Library Solanum lycopersic... 46 1.4 1
(AW790510) D00011-R Lambda Zap, Stratagene Blumeria graminis... 36 1.6 2
(AG340141) Mus musculus molossinus DNA, clone:MSMg01-133B01.... 36 2.2 2
(AC230624) Bos taurus clone CH240-503E8, WORKING DRAFT SEQUE... 34 2.6 2
(AC207489) Equus caballus clone CH241-164K18, WORKING DRAFT ... 42 3.0 4
(CR406253) Gallus gallus finished cDNA, clone ChEST881d3. 34 3.5 2
(BU276847) 603864710F1 CSEQCHN54 Gallus gallus cDNA clone Ch... 34 3.5 2
(BU387486) 603856489F1 CSEQCHN75 Gallus gallus cDNA clone Ch... 34 3.6 2
(AB090308) Bombyx mori Bmtitin1, Bmtitin2, Bmmiple, Bmsyx6, ... 38 3.7 3
(BX927414) Zebrafish DNA sequence from clone DKEYP-5A5 in li... 44 4.7 2
(AC162604) Bos taurus clone CH240-113N14, WORKING DRAFT SEQU... 44 5.4 1
(AC220700) Bos taurus clone CH240-349G1, WORKING DRAFT SEQUE... 44 5.4 1
(AC010502) Homo sapiens chromosome 16 clone CTD-2386G23, WOR... 44 5.4 1
(EK233978) 1095460193104 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1
(EJ035009) 1095454066453 Global-Ocean-Sampling_GS-26-01-01-1... 44 5.4 1
(EI845691) POTHW57TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 5.4 1
(AG176276) Pan troglodytes DNA, clone: RP43-047H13.T7. 44 5.4 1
(BW361512) Ciona intestinalis cDNA, clone:cima824j03, 5'end,... 44 5.4 1
(AC159144) Medicago truncatula chromosome 7 clone mth2-41a4,... 38 7.3 3
(EJ593222) 1092961063325 Global-Ocean-Sampling_GS-29-01-01-1... 34 7.8 2
(AC177600) Strongylocentrotus purpuratus clone R3-1023P22, W... 32 9.4 2
(AC179515) Strongylocentrotus purpuratus clone R3-6B1, WORKI... 32 9.5 2
(AC181871) Strongylocentrotus purpuratus clone R3-1019I20, W... 32 9.5 2
(AC176788) Strongylocentrotus purpuratus clone R3-3106G7, WO... 32 9.5 2
>(BJ434815) Dictyostelium discoideum cDNA clone:ddv25e05, 3' end,
single read.
Length = 560
Score = 581 bits (293), Expect(2) = 0.0
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 11 ttgttaataatttcaatagtcnaccactaaaggaggataacattctatatcaaatgaaac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgttaataatttcaatagtcnaccactaaaggaggataacattctatatcaaatgaaac 501
Query: 71 aatcaaataaatcaatgttattctttggcgatgatacttggttaaaactattccctgact 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatcaaataaatcaatgttattctttggcgatgatacttggttaaaactattccctgact 441
Query: 131 acttcaaacgacatgatggtacaactagtttntatgttgccgatactgtagaagttgatt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acttcaaacgacatgatggtacaactagtttntatgttgccgatactgtagaagttgatt 381
Query: 191 taaatgtcactagacatttagaaccagaattaaataataatgattgggatgttatgtttt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaatgtcactagacatttagaaccagaattaaataataatgattgggatgttatgtttt 321
Query: 251 tacattaccttggtttagatcatataggtcatttggaaggtccacattctaatctaatg 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacattaccttggtttagatcatataggtcatttggaaggtccacattctaatctaatg 262
Score = 242 bits (122), Expect(2) = 0.0
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 448 gaaaaaccactaccaacattatttatattttgtagcgatcatggtatgaatgaaattggt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gaaaaaccactaccaacattatttatattttgtagcgatcatggtatgaatgaaattggt 64
Query: 508 aatcatggtggttcatcagattcagaaacttctgctgtactggttttaatgagttcttta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aatcatggtggttcatcagattcagaaacttctgctgtactggttttaatgagttcttta 4
Query: 568 ta 569
||
Sbjct: 3 ta 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 469,925,943
Number of extensions: 28185152
Number of successful extensions: 2444813
Number of sequences better than 10.0: 34
Length of query: 569
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 546
Effective length of database: 93,106,754,628
Effective search space: 50836288026888
Effective search space used: 50836288026888
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.28 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |