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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U10478-1
Contig ID Contig-U10478-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10478-1 (Contig-U10478-1Q) /CSM_Contig/Contig-U10478-1Q.Seq.d
ATTCGATTATATAATATATATTATAAATATAAATATTATTATAATATTAT
AATATTACAACTTTTATTTATTTAAAAAAAATAAAAGCTAAAAAAATATT
AAAAAAAAAAGATTAAAAAAAAATAAAAGCTTAAAAAAAANGAAAATTAT
TATTTATTTATTNGTTTTAANGTTTGCAGTATTTTGTATTAATGCTATCA
CAGAGTCACCTCTCAGCGCTCAAACTCCTTCATTTACACCATGCCATTCA
TTGCAATCTGAAAGNGCTTCAAGCAATGGCGGTAGTAACAACGTTGGAAG
CCAAACTGATAGTAGAAGCATATCAAGNGAAAGTCAAAGNGCCTCAGGTC
AAAACACTGCCAGCCAAAGTTCAAGTCAAAGTGCAAGTCAAAGTGCAAGT
CAAAGTGCAAGTCAAAGTGCCTCAAGTGGAAATGCTGCAAGTCAAAGTGC
AAGTCAAAGTGCAAGTCAAAGTGGAAGTCAAAGTGGAAGCCAAAGTGGAA
GCCAAAGTGCCTCAAGTCAAAATGCTGCAAGTCAAAGTGTTGCAAGTGGA
AGCCAAAGTGTTGCAAGTGGAAGCCAAAGTGTTGCAAGTGGAAGCCAAAG
TGTTGCTAGTGGAAGCCAAAGTGTCTCGTGTCAAAATTCTGTTAGTCACA
GTCCAAGTCAAAGTGCAAGGTCAAAGTGACAGTCAAATTTCAAGCCAAGG
TGTAGTCAGTCAAAGTGCCACTCAAAGTGCCAGTCAAAGTTCAAGCCAAG
GATCCAGTCAAAGTGTTAATCAAAGCGCTAGTCAAAGTGCTAATCATAGC
GCTAGTCAAAGTGCAAACCAAAGTGTTGCAAGTCAAGGTTCTGCAAATCA
AAGTGCAAGTCAAAGTGTTTCAAGCCAAAGTGCCAGTCAAAGCGCAAGTC
AAAGCGCTAGTCAAAGTGCAAGTCAAAGTGTTTAAAGTCAAAGTGAAATT
CCCTCTCCTTGTAAAAGAAATAAAAGTTAAAAAAAACCAAATTTAATAAA
AAAAATTAGATAAATTCATCAT
Gap no gap
Contig length 1022
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4876793
End point 4875770
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U10478
List of clone(s) 

est1=VFL801E,1,1023
Translated Amino Acid sequence 
sii*yil*i*ill*yynittfiylkkikakkilkkkd*kkika*kkxkllfiyxf*XLQY
FVLMLSQSHLSALKLLHLHHAIHCNLKXLQAMAVVTTLEAKLIVEAYQXKVKXPQVKTLP
AKVQVKVQVKVQVKVQVKVPQVEMLQVKVQVKVQVKVEVKVEAKVEAKVPQVKMLQVKVL
QVEAKVLQVEAKVLQVEAKVLLVEAKVSRVKILLVTVQVKVQGQSDSQISSQGVVSQSAT
QSASQSSSQGSSQSVNQSASQSANHSASQSANQSVASQGSANQSASQSVSSQSASQSASQ
SASQSASQSV*sqseipspckrnks*kkpnlikkir*ihh
Translated Amino Acid sequence (All Frames) 
Frame A:
irlyniyykykyyyniiilqllfi*kk*klkky*kkkikkk*klkkxenyylfixfxvcs
ily*cyhrvtsqrsnsfiytmpfiai*kxfkqwr**qrwkpn***khikxkskxlrskhc
qpkfkskckskckskckskclkwkcckskckskckskwkskwkpkwkpkclkskcckskc
ckwkpkcckwkpkcckwkpkcc*wkpkclvskfc*sqskskckvkvtvkfqakv*svkvp
lkvpvkvqakdpvkvlikalvkvliialvkvqtkvlqvkvlqikvqvkvfqakvpvkaqv
kalvkvqvkvfkvkvkfpllvkeikvkknqi**kkldkfi


Frame B:
fdyiiyiininiiiil*yynfylfkknks*knikkkrlkknkslkkxkiiiylxvlxfav
fcinaitesplsaqtpsftpchslqsexassnggsnnvgsqtdsrsisxesqxasgqnta
sqsssqsasqsasqsasqsassgnaasqsasqsasqsgsqsgsqsgsqsassqnaasqsv
asgsqsvasgsqsvasgsqsvasgsqsvscqnsvshspsqsarsk*qsnfkprcsqskch
skcqskfkpriqskc*skr*skc*s*r*skckpkccksrfckskckskcfkpkcqskrks
kr*skckskclksk*nslsl*kk*klkktkfnkkn*inss


Frame C:
sii*yil*i*ill*yynittfiylkkikakkilkkkd*kkika*kkxkllfiyxf*XLQY
FVLMLSQSHLSALKLLHLHHAIHCNLKXLQAMAVVTTLEAKLIVEAYQXKVKXPQVKTLP
AKVQVKVQVKVQVKVQVKVPQVEMLQVKVQVKVQVKVEVKVEAKVEAKVPQVKMLQVKVL
QVEAKVLQVEAKVLQVEAKVLLVEAKVSRVKILLVTVQVKVQGQSDSQISSQGVVSQSAT
QSASQSSSQGSSQSVNQSASQSANHSASQSANQSVASQGSANQSASQSVSSQSASQSASQ
SASQSASQSV*sqseipspckrnks*kkpnlikkir*ihh
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10478-1 (Contig-U10478-1Q)
/CSM_Contig/Contig-U10478-1Q.Seq.d
         (1022 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10478-1 (Contig-U10478-1Q) /CSM_Contig/Conti...   868  0.0
Contig-U04998-1 (Contig-U04998-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01028-1 (Contig-U01028-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11294-1 (Contig-U11294-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U00011-1 (Contig-U00011-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U12450-1 (Contig-U12450-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U12053-1 (Contig-U12053-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U09710-1 (Contig-U09710-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U06691-1 (Contig-U06691-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U10495-1 (Contig-U10495-1Q) /CSM_Contig/Conti...    32  1.1

>Contig-U10478-1 (Contig-U10478-1Q) /CSM_Contig/Contig-U10478-1Q.Seq.d
          Length = 1022

 Score =  868 bits (438), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Plus

                                                                       
Query: 523 tgctgcaagtcaaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgt 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgctgcaagtcaaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgt 582

                                                                       
Query: 583 tgcaagtggaagccaaagtgttgctagtggaagccaaagtgtctcgtgtcaaaattctgt 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgcaagtggaagccaaagtgttgctagtggaagccaaagtgtctcgtgtcaaaattctgt 642

                                                                       
Query: 643 tagtcacagtccaagtcaaagtgcaaggtcaaagtgacagtcaaatttcaagccaaggtg 702
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tagtcacagtccaagtcaaagtgcaaggtcaaagtgacagtcaaatttcaagccaaggtg 702

                                                                       
Query: 703 tagtcagtcaaagtgccactcaaagtgccagtcaaagttcaagccaaggatccagtcaaa 762
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tagtcagtcaaagtgccactcaaagtgccagtcaaagttcaagccaaggatccagtcaaa 762

                                                                       
Query: 763 gtgttaatcaaagcgctagtcaaagtgctaatcatagcgctagtcaaagtgcaaaccaaa 822
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gtgttaatcaaagcgctagtcaaagtgctaatcatagcgctagtcaaagtgcaaaccaaa 822

                                                                       
Query: 823 gtgttgcaagtcaaggttctgcaaatcaaagtgcaagtcaaagtgtttcaagccaaagtg 882
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gtgttgcaagtcaaggttctgcaaatcaaagtgcaagtcaaagtgtttcaagccaaagtg 882

                                                                       
Query: 883 ccagtcaaagcgcaagtcaaagcgctagtcaaagtgcaagtcaaagtgtttaaagtcaaa 942
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ccagtcaaagcgcaagtcaaagcgctagtcaaagtgcaagtcaaagtgtttaaagtcaaa 942

                             
Query: 943 gtgaaattccctctcctt 960
           ||||||||||||||||||
Sbjct: 943 gtgaaattccctctcctt 960


 Score =  412 bits (208), Expect = e-115
 Identities = 223/223 (100%)
 Strand = Plus / Plus

                                                                       
Query: 142 gaaaattattatttatttattngttttaangtttgcagtattttgtattaatgctatcac 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gaaaattattatttatttattngttttaangtttgcagtattttgtattaatgctatcac 201

                                                                       
Query: 202 agagtcacctctcagcgctcaaactccttcatttacaccatgccattcattgcaatctga 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agagtcacctctcagcgctcaaactccttcatttacaccatgccattcattgcaatctga 261

                                                                       
Query: 262 aagngcttcaagcaatggcggtagtaacaacgttggaagccaaactgatagtagaagcat 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagngcttcaagcaatggcggtagtaacaacgttggaagccaaactgatagtagaagcat 321

                                                      
Query: 322 atcaagngaaagtcaaagngcctcaggtcaaaacactgccagc 364
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atcaagngaaagtcaaagngcctcaggtcaaaacactgccagc 364


 Score = 75.8 bits (38), Expect = 8e-14
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 873 agccaaagtgccagtcaaagcgcaagtcaaagcgctagtcaaagtgcaagtcaaagtg 930
           ||||||||| | |||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 362 agccaaagttcaagtcaaagtgcaagtcaaagtgcaagtcaaagtgcaagtcaaagtg 419


 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 869 ttcaagccaaagtgccagtcaaagcgcaagtcaaagcgctagtcaaagtgc 919
           |||||| |||||||| |||||||| ||||||||||| || |||||||||||
Sbjct: 370 ttcaagtcaaagtgcaagtcaaagtgcaagtcaaagtgcaagtcaaagtgc 420


 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 881 tgccagtcaaagcgcaagtcaaagcgctagtcaaagtgcaagtcaaagtg 930
           |||||| |||||  |||||||||| || ||||||||||||||||||||||
Sbjct: 358 tgccagccaaagttcaagtcaaagtgcaagtcaaagtgcaagtcaaagtg 407


 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 885 agtcaaagcgcaagtcaaagcgctagtcaaagtgcaagtcaaagtg 930
           |||||||| ||||||||||| || |||||||||| |||||||||||
Sbjct: 440 agtcaaagtgcaagtcaaagtgcaagtcaaagtggaagtcaaagtg 485


 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 894 gcaagtcaaagcgctagtcaaagtgcaagtcaaagtg 930
           ||||||||||| || ||||||||||||||||||||||
Sbjct: 437 gcaagtcaaagtgcaagtcaaagtgcaagtcaaagtg 473


 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 871 caagccaaagtgccagtcaaagcgcaagtcaaagcgctagtcaaagtgcaagtcaaagtg 930
           |||| |||||||| |||||||| ||||||||||| |  |||||||||| ||| |||||||
Sbjct: 438 caagtcaaagtgcaagtcaaagtgcaagtcaaagtggaagtcaaagtggaagccaaagtg 497


 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                   
Query: 849 caaagtgcaagtcaaagtgtttcaagccaaagtgccagtcaaagcgcaagtcaaag 904
           |||||| ||||||||||||   |||| |||||||| |||||||| |||||||||||
Sbjct: 365 caaagttcaagtcaaagtg---caagtcaaagtgcaagtcaaagtgcaagtcaaag 417


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                       
Query: 780 agtcaaagtgctaatcatagcgctagtcaaagtgcaaaccaaagtgttgcaagtcaaggt 839
           ||||||||||| | ||| || || |||||||||||||  |||||||   |||||  |  |
Sbjct: 374 agtcaaagtgcaagtcaaagtgcaagtcaaagtgcaagtcaaagtgcctcaagtggaaat 433

                                       
Query: 840 tctgcaaatcaaagtgcaagtcaaagtg 867
            |||||| ||||||||||||||||||||
Sbjct: 434 gctgcaagtcaaagtgcaagtcaaagtg 461


 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 40/45 (88%), Gaps = 3/45 (6%)
 Strand = Plus / Plus

                                                        
Query: 848 tcaaagtgcaagtcaaagtgtttcaagccaaagtgccagtcaaag 892
           ||||||||||||||||||||   |||| |||||||| ||||||||
Sbjct: 376 tcaaagtgcaagtcaaagtg---caagtcaaagtgcaagtcaaag 417


 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 708 agtcaaagtgccactcaaagtgccagtcaaagttcaag 745
           ||||||||||| | ||||||||| ||||||||| ||||
Sbjct: 374 agtcaaagtgcaagtcaaagtgcaagtcaaagtgcaag 411


 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 842 tgcaaatcaaagtgcaagtcaaagtg 867
           ||||| ||||||||||||||||||||
Sbjct: 448 tgcaagtcaaagtgcaagtcaaagtg 473


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 708 agtcaaagtgccactcaaagtgccagtcaaagt 740
           ||||||||||| | ||||||||| |||||||||
Sbjct: 440 agtcaaagtgcaagtcaaagtgcaagtcaaagt 472


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 708 agtcaaagtgccactcaaagtgccagtcaaagt 740
           ||||||||||| | ||||||||| |||||||||
Sbjct: 386 agtcaaagtgcaagtcaaagtgcaagtcaaagt 418


 Score = 40.1 bits (20), Expect = 0.005
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 644 agtcacagtccaagtcaaagtgcaaggtcaaagtgacagtcaaa 687
           ||||| ||| ||||||||||||||| |||||||||  |||||||
Sbjct: 440 agtcaaagtgcaagtcaaagtgcaa-gtcaaagtggaagtcaaa 482


 Score = 40.1 bits (20), Expect = 0.005
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 644 agtcacagtccaagtcaaagtgcaaggtcaaagtgacagtcaaa 687
           ||||| ||| ||||||||||||||| |||||||||  |||||||
Sbjct: 374 agtcaaagtgcaagtcaaagtgcaa-gtcaaagtgcaagtcaaa 416


 Score = 38.2 bits (19), Expect = 0.018
 Identities = 52/63 (82%)
 Strand = Plus / Plus

                                                                       
Query: 728 tgccagtcaaagttcaagccaaggatccagtcaaagtgttaatcaaagcgctagtcaaag 787
           |||||| ||||||||||| ||| |  | ||||||||||  | |||||| || ||||||||
Sbjct: 358 tgccagccaaagttcaagtcaaagtgcaagtcaaagtgcaagtcaaagtgcaagtcaaag 417

              
Query: 788 tgc 790
           |||
Sbjct: 418 tgc 420


 Score = 36.2 bits (18), Expect = 0.072
 Identities = 36/42 (85%)
 Strand = Plus / Plus

                                                     
Query: 708 agtcaaagtgccactcaaagtgccagtcaaagttcaagccaa 749
           ||||||||||| | ||||||||  |||||||||  |||||||
Sbjct: 452 agtcaaagtgcaagtcaaagtggaagtcaaagtggaagccaa 493


 Score = 36.2 bits (18), Expect = 0.072
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                     
Query: 842 tgcaaatcaaagtgcaagtcaaagtg 867
           ||||| |||||||| |||||||||||
Sbjct: 460 tgcaagtcaaagtggaagtcaaagtg 485


 Score = 36.2 bits (18), Expect = 0.072
 Identities = 31/34 (91%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                             
Query: 654 caagtcaaagtgcaaggtcaaagtgacagtcaaa 687
           ||||||||||||||| |||||||||  |||||||
Sbjct: 438 caagtcaaagtgcaa-gtcaaagtgcaagtcaaa 470


 Score = 36.2 bits (18), Expect = 0.072
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 608 agtggaagccaaagtgtctcgtgtcaaaat 637
           |||||||||||||||| |||  ||||||||
Sbjct: 494 agtggaagccaaagtgcctcaagtcaaaat 523


 Score = 36.2 bits (18), Expect = 0.072
 Identities = 31/34 (91%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                             
Query: 654 caagtcaaagtgcaaggtcaaagtgacagtcaaa 687
           ||||||||||||||| |||||||||  |||||||
Sbjct: 372 caagtcaaagtgcaa-gtcaaagtgcaagtcaaa 404


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 38/45 (84%)
 Strand = Plus / Plus

                                                        
Query: 770 tcaaagcgctagtcaaagtgctaatcatagcgctagtcaaagtgc 814
           |||||| || ||||||||||| | ||| || || |||||||||||
Sbjct: 376 tcaaagtgcaagtcaaagtgcaagtcaaagtgcaagtcaaagtgc 420


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 565 aagtggaagccaaagtg 581
           |||||||||||||||||
Sbjct: 481 aagtggaagccaaagtg 497


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 586 aagtggaagccaaagtg 602
           |||||||||||||||||
Sbjct: 493 aagtggaagccaaagtg 509


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 586 aagtggaagccaaagtg 602
           |||||||||||||||||
Sbjct: 481 aagtggaagccaaagtg 497


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1006 ttagataaattcatcat 1022
            |||||||||||||||||
Sbjct: 1006 ttagataaattcatcat 1022


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 523 tgctgcaagtcaaagtg 539
           |||||||||||||||||
Sbjct: 433 tgctgcaagtcaaagtg 449


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 57 acaacttttatttattt 73
          |||||||||||||||||
Sbjct: 57 acaacttttatttattt 73


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 565 aagtggaagccaaagtg 581
           |||||||||||||||||
Sbjct: 493 aagtggaagccaaagtg 509


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 544 aagtggaagccaaagtg 560
           |||||||||||||||||
Sbjct: 481 aagtggaagccaaagtg 497


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 544 aagtggaagccaaagtg 560
           |||||||||||||||||
Sbjct: 493 aagtggaagccaaagtg 509


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 46/56 (82%)
 Strand = Plus / Plus

                                                                   
Query: 770 tcaaagcgctagtcaaagtgctaatcatagcgctagtcaaagtgcaaaccaaagtg 825
           |||||| || ||||||||||| | ||| || |  |||||||||| || ||||||||
Sbjct: 442 tcaaagtgcaagtcaaagtgcaagtcaaagtggaagtcaaagtggaagccaaagtg 497


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 708 agtcaaagtgccactcaaagtgcc 731
           ||||||||||| | ||||||||||
Sbjct: 398 agtcaaagtgcaagtcaaagtgcc 421


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 608 agtggaagccaaagtg 623
           ||||||||||||||||
Sbjct: 482 agtggaagccaaagtg 497


 Score = 30.2 bits (15), Expect = 4.5
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 644 agtcacagtccaagtcaaagtgc 666
           ||||| ||| |||||||||||||
Sbjct: 398 agtcaaagtgcaagtcaaagtgc 420


>Contig-U04998-1 (Contig-U04998-1Q) /CSM_Contig/Contig-U04998-1Q.Seq.d
          Length = 610

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 aaaattattatttatttatt 162
           ||||||||||||||||||||
Sbjct: 535 aaaattattatttatttatt 516


>Contig-U01028-1 (Contig-U01028-1Q) /CSM_Contig/Contig-U01028-1Q.Seq.d
          Length = 1529

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 aaaattattatttatttatt 162
           ||||||||||||||||||||
Sbjct: 135 aaaattattatttatttatt 116


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,732
Number of Sequences: 6905
Number of extensions: 10732
Number of successful extensions: 2611
Number of sequences better than 10.0: 207
length of query: 1022
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1006
effective length of database: 5,564,391
effective search space: 5597777346
effective search space used: 5597777346
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.20
Homology vs DNA 
Query= Contig-U10478-1 (Contig-U10478-1Q) /CSM_Contig/Contig-U10478-1Q.Seq.d
         (1022 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434481) Dictyostelium discoideum cDNA clone:ddv24b02, 3' ...   426   0.0    5
(BJ415866) Dictyostelium discoideum cDNA clone:ddv24b02, 5' ...   402   e-180  2
(AZ097202) RPCI-23-461N14.TJ RPCI-23 Mus musculus genomic cl...    52   0.042  1
(FK814573) PRAG-aad02b02.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(FG118805) PRAG-aab45d09.b1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(FG116197) PRAG-aab74b08.b1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(FG112306) PRAG-aab82b02.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(FG111787) PRAG-aab74b08.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(FG109011) PRAG-aab43a09.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(EY207890) PRAG-aaa71d07.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(EY207436) PRAG-aaa15f01.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(EY207037) PRAG-aab24e04.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(EY204210) PRAG-aaa43a10.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(EY204081) PRAG-aab36a10.g1 Sand_fly_EST_Normalized Phleboto...    46   2.6    1
(EJ100358) 1095467041807 Global-Ocean-Sampling_GS-26-01-01-1...    28   5.3    4
(AC173552) Strongylocentrotus purpuratus clone R3-9D4, WORKI...    34   5.5    6

>(BJ434481) Dictyostelium discoideum cDNA clone:ddv24b02, 3' end,
           single read.
          Length = 674

 Score =  426 bits (215), Expect(5) = 0.0
 Identities = 215/215 (100%)
 Strand = Plus / Minus


Query: 670 gtcaaagtgacagtcaaatttcaagccaaggtgtagtcagtcaaagtgccactcaaagtg 729
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtcaaagtgacagtcaaatttcaagccaaggtgtagtcagtcaaagtgccactcaaagtg 295


Query: 730 ccagtcaaagttcaagccaaggatccagtcaaagtgttaatcaaagcgctagtcaaagtg 789
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccagtcaaagttcaagccaaggatccagtcaaagtgttaatcaaagcgctagtcaaagtg 235


Query: 790 ctaatcatagcgctagtcaaagtgcaaaccaaagtgttgcaagtcaaggttctgcaaatc 849
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ctaatcatagcgctagtcaaagtgcaaaccaaagtgttgcaagtcaaggttctgcaaatc 175


Query: 850 aaagtgcaagtcaaagtgtttcaagccaaagtgcc 884
           |||||||||||||||||||||||||||||||||||
Sbjct: 174 aaagtgcaagtcaaagtgtttcaagccaaagtgcc 140

 Score =  291 bits (147), Expect(5) = 0.0
 Identities = 147/147 (100%)
 Strand = Plus / Minus


Query: 523 tgctgcaagtcaaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgt 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctgcaagtcaaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgt 441


Query: 583 tgcaagtggaagccaaagtgttgctagtggaagccaaagtgtctcgtgtcaaaattctgt 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcaagtggaagccaaagtgttgctagtggaagccaaagtgtctcgtgtcaaaattctgt 381


Query: 643 tagtcacagtccaagtcaaagtgcaag 669
           |||||||||||||||||||||||||||
Sbjct: 380 tagtcacagtccaagtcaaagtgcaag 354

 Score = 34.2 bits (17), Expect(5) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 1006 ttagataaattcatcat 1022
            |||||||||||||||||
Sbjct: 18   ttagataaattcatcat 2

 Score = 34.2 bits (17), Expect(5) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 945 gaaattccctctccttg 961
           |||||||||||||||||
Sbjct: 79  gaaattccctctccttg 63

 Score = 32.2 bits (16), Expect(5) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 349 tcaaaacactgccagc 364
           ||||||||||||||||
Sbjct: 674 tcaaaacactgccagc 659

 Score =  133 bits (67), Expect(9) = 3e-67
 Identities = 70/71 (98%)
 Strand = Plus / Minus


Query: 554 caaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgttgctagtgga 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 490 caaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgttgcaagtgga 431


Query: 614 agccaaagtgt 624
           |||||||||||
Sbjct: 430 agccaaagtgt 420

 Score = 54.0 bits (27), Expect(9) = 3e-67
 Identities = 33/35 (94%)
 Strand = Plus / Minus


Query: 848 tcaaagtgcaagtcaaagtgtttcaagccaaagtg 882
           ||||||||||||||||||||||| ||| |||||||
Sbjct: 113 tcaaagtgcaagtcaaagtgtttaaagtcaaagtg 79

 Score = 54.0 bits (27), Expect(9) = 3e-67
 Identities = 33/35 (94%)
 Strand = Plus / Minus


Query: 756 agtcaaagtgttaatcaaagcgctagtcaaagtgc 790
           |||||||||| |||||| |||||||||||||||||
Sbjct: 244 agtcaaagtgctaatcatagcgctagtcaaagtgc 210

 Score = 44.1 bits (22), Expect(9) = 3e-67
 Identities = 28/30 (93%)
 Strand = Plus / Minus


Query: 671 tcaaagtgacagtcaaatttcaagccaagg 700
           |||||||| |||||||| ||||||||||||
Sbjct: 302 tcaaagtgccagtcaaagttcaagccaagg 273

 Score = 34.2 bits (17), Expect(9) = 3e-67
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 544 aagtggaagccaaagtg 560
           |||||||||||||||||
Sbjct: 530 aagtggaagccaaagtg 514

 Score = 34.2 bits (17), Expect(9) = 3e-67
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 523 tgctgcaagtcaaagtg 539
           |||||||||||||||||
Sbjct: 590 tgctgcaagtcaaagtg 574

 Score = 30.2 bits (15), Expect(9) = 3e-67
 Identities = 24/27 (88%)
 Strand = Plus / Minus


Query: 806 tcaaagtgcaaaccaaagtgttgcaag 832
           |||||||||||  ||||||||| ||||
Sbjct: 176 tcaaagtgcaagtcaaagtgtttcaag 150

 Score = 28.2 bits (14), Expect(9) = 3e-67
 Identities = 29/34 (85%)
 Strand = Plus / Minus


Query: 707 cagtcaaagtgccactcaaagtgccagtcaaagt 740
           |||||||||||  | |||||| || |||||||||
Sbjct: 269 cagtcaaagtgttaatcaaagcgctagtcaaagt 236

 Score = 28.2 bits (14), Expect(9) = 3e-67
 Identities = 20/22 (90%)
 Strand = Plus / Minus


Query: 644 agtcacagtccaagtcaaagtg 665
           ||||| ||| ||||||||||||
Sbjct: 367 agtcaaagtgcaagtcaaagtg 346

 Score = 91.7 bits (46), Expect(8) = 2e-48
 Identities = 49/50 (98%)
 Strand = Plus / Minus


Query: 575 caaagtgttgcaagtggaagccaaagtgttgctagtggaagccaaagtgt 624
           |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 490 caaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgt 441

 Score = 56.0 bits (28), Expect(8) = 2e-48
 Identities = 40/44 (90%)
 Strand = Plus / Minus


Query: 708 agtcaaagtgccactcaaagtgccagtcaaagttcaagccaagg 751
           ||||||||||| | |||||||| |||||||| ||||||||||||
Sbjct: 367 agtcaaagtgcaagtcaaagtgacagtcaaatttcaagccaagg 324

 Score = 54.0 bits (27), Expect(8) = 2e-48
 Identities = 33/35 (94%)
 Strand = Plus / Minus


Query: 780 agtcaaagtgctaatcatagcgctagtcaaagtgc 814
           |||||||||| |||||| |||||||||||||||||
Sbjct: 268 agtcaaagtgttaatcaaagcgctagtcaaagtgc 234

 Score = 34.2 bits (17), Expect(8) = 2e-48
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 565 aagtggaagccaaagtg 581
           |||||||||||||||||
Sbjct: 530 aagtggaagccaaagtg 514

 Score = 34.2 bits (17), Expect(8) = 2e-48
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 544 aagtggaagccaaagtg 560
           |||||||||||||||||
Sbjct: 542 aagtggaagccaaagtg 526

 Score = 30.2 bits (15), Expect(8) = 2e-48
 Identities = 24/27 (88%)
 Strand = Plus / Minus


Query: 848 tcaaagtgcaagtcaaagtgtttcaag 874
           |||||||||||  ||||||||| ||||
Sbjct: 218 tcaaagtgcaaaccaaagtgttgcaag 192

 Score = 28.2 bits (14), Expect(8) = 2e-48
 Identities = 29/34 (85%)
 Strand = Plus / Minus


Query: 755 cagtcaaagtgttaatcaaagcgctagtcaaagt 788
           |||||||||||  | |||||| || |||||||||
Sbjct: 317 cagtcaaagtgccactcaaagtgccagtcaaagt 284

 Score = 28.2 bits (14), Expect(8) = 2e-48
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 526 tgcaagtcaaagtg 539
           ||||||||||||||
Sbjct: 563 tgcaagtcaaagtg 550

 Score =  133 bits (67), Expect(5) = 2e-35
 Identities = 70/71 (98%)
 Strand = Plus / Minus


Query: 533 caaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgttgcaagtgga 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 caaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgttgctagtgga 410


Query: 593 agccaaagtgt 603
           |||||||||||
Sbjct: 409 agccaaagtgt 399

 Score = 34.2 bits (17), Expect(5) = 2e-35
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 723 caaagtgccagtcaaag 739
           |||||||||||||||||
Sbjct: 148 caaagtgccagtcaaag 132

 Score = 30.2 bits (15), Expect(5) = 2e-35
 Identities = 18/19 (94%)
 Strand = Plus / Minus


Query: 710 tcaaagtgccactcaaagt 728
           ||||||||||| |||||||
Sbjct: 302 tcaaagtgccagtcaaagt 284

 Score = 28.2 bits (14), Expect(5) = 2e-35
 Identities = 17/18 (94%)
 Strand = Plus / Minus


Query: 848 tcaaagtgcaagtcaaag 865
           |||||| |||||||||||
Sbjct: 137 tcaaagcgcaagtcaaag 120

 Score = 28.2 bits (14), Expect(5) = 2e-35
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 526 tgcaagtcaaagtg 539
           ||||||||||||||
Sbjct: 575 tgcaagtcaaagtg 562

 Score = 91.7 bits (46), Expect(4) = 2e-23
 Identities = 49/50 (98%)
 Strand = Plus / Minus


Query: 533 caaagtgttgcaagtggaagccaaagtgttgcaagtggaagccaaagtgt 582
           |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 448 caaagtgttgcaagtggaagccaaagtgttgctagtggaagccaaagtgt 399

 Score = 46.1 bits (23), Expect(4) = 2e-23
 Identities = 44/51 (86%)
 Strand = Plus / Minus


Query: 740 ttcaagccaaggatccagtcaaagtgttaatcaaagcgctagtcaaagtgc 790
           |||||||||| |  |||||||||| |  | |||||||||||||||||||||
Sbjct: 155 ttcaagccaaagtgccagtcaaagcgcaagtcaaagcgctagtcaaagtgc 105

 Score = 28.2 bits (14), Expect(4) = 2e-23
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 526 tgcaagtcaaagtg 539
           ||||||||||||||
Sbjct: 629 tgcaagtcaaagtg 616

 Score = 26.3 bits (13), Expect(4) = 2e-23
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 656 agtcaaagtgcaa 668
           |||||||||||||
Sbjct: 220 agtcaaagtgcaa 208

 Score = 52.0 bits (26), Expect(6) = 1e-22
 Identities = 56/66 (84%)
 Strand = Plus / Minus


Query: 771 caaagcgctagtcaaagtgctaatcatagcgctagtcaaagtgcaaaccaaagtgttgca 830
           ||||| || |||||||| || | ||| |||||||||||||||||||  |||||||||  |
Sbjct: 148 caaagtgccagtcaaagcgcaagtcaaagcgctagtcaaagtgcaagtcaaagtgtttaa 89


Query: 831 agtcaa 836
           ||||||
Sbjct: 88  agtcaa 83

 Score = 50.1 bits (25), Expect(6) = 1e-22
 Identities = 28/29 (96%)
 Strand = Plus / Minus


Query: 596 caaagtgttgctagtggaagccaaagtgt 624
           ||||||||||| |||||||||||||||||
Sbjct: 490 caaagtgttgcaagtggaagccaaagtgt 462

 Score = 34.2 bits (17), Expect(6) = 1e-22
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 586 aagtggaagccaaagtg 602
           |||||||||||||||||
Sbjct: 530 aagtggaagccaaagtg 514

 Score = 34.2 bits (17), Expect(6) = 1e-22
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 565 aagtggaagccaaagtg 581
           |||||||||||||||||
Sbjct: 542 aagtggaagccaaagtg 526

 Score = 30.2 bits (15), Expect(6) = 1e-22
 Identities = 18/19 (94%)
 Strand = Plus / Minus


Query: 722 tcaaagtgccagtcaaagt 740
           ||||||||||| |||||||
Sbjct: 314 tcaaagtgccactcaaagt 296

 Score = 28.2 bits (14), Expect(6) = 1e-22
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 526 tgcaagtcaaagtg 539
           ||||||||||||||
Sbjct: 617 tgcaagtcaaagtg 604

 Score = 42.1 bits (21), Expect(5) = 2e-13
 Identities = 30/33 (90%)
 Strand = Plus / Minus


Query: 708 agtcaaagtgccactcaaagtgccagtcaaagt 740
           ||||||||||| | ||||||||| |||||||||
Sbjct: 637 agtcaaagtgcaagtcaaagtgcaagtcaaagt 605

 Score = 40.1 bits (20), Expect(5) = 2e-13
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 848 tcaaagtgcaagtcaaagtg 867
           ||||||||||||||||||||
Sbjct: 365 tcaaagtgcaagtcaaagtg 346

 Score = 32.2 bits (16), Expect(5) = 2e-13
 Identities = 46/56 (82%)
 Strand = Plus / Minus


Query: 770 tcaaagcgctagtcaaagtgctaatcatagcgctagtcaaagtgcaaaccaaagtg 825
           |||||| || ||||||||||| | ||| || |  |||||||||| || ||||||||
Sbjct: 581 tcaaagtgcaagtcaaagtgcaagtcaaagtggaagtcaaagtggaagccaaagtg 526

 Score = 32.2 bits (16), Expect(5) = 2e-13
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 654 caagtcaaagtgcaag 669
           ||||||||||||||||
Sbjct: 651 caagtcaaagtgcaag 636

 Score = 30.2 bits (15), Expect(5) = 2e-13
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 819 caaagtgttgcaagt 833
           |||||||||||||||
Sbjct: 490 caaagtgttgcaagt 476

 Score = 50.1 bits (25), Expect(4) = 3e-09
 Identities = 28/29 (96%)
 Strand = Plus / Minus


Query: 533 caaagtgttgcaagtggaagccaaagtgt 561
           ||||||||||| |||||||||||||||||
Sbjct: 427 caaagtgttgctagtggaagccaaagtgt 399

 Score = 34.2 bits (17), Expect(4) = 3e-09
 Identities = 23/25 (92%)
 Strand = Plus / Minus


Query: 565 aagtggaagccaaagtgttgcaagt 589
           ||||| || ||||||||||||||||
Sbjct: 215 aagtgcaaaccaaagtgttgcaagt 191

 Score = 30.2 bits (15), Expect(4) = 3e-09
 Identities = 21/23 (91%)
 Strand = Plus / Minus


Query: 643 tagtcacagtccaagtcaaagtg 665
           |||||| ||| ||||||||||||
Sbjct: 116 tagtcaaagtgcaagtcaaagtg 94

 Score = 28.2 bits (14), Expect(4) = 3e-09
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 526 tgcaagtcaaagtg 539
           ||||||||||||||
Sbjct: 641 tgcaagtcaaagtg 628

 Score = 36.2 bits (18), Expect(5) = 2e-08
 Identities = 24/26 (92%)
 Strand = Plus / Minus


Query: 842 tgcaaatcaaagtgcaagtcaaagtg 867
           ||||| |||||||| |||||||||||
Sbjct: 563 tgcaagtcaaagtggaagtcaaagtg 538

 Score = 36.2 bits (18), Expect(5) = 2e-08
 Identities = 24/26 (92%)
 Strand = Plus / Minus


Query: 644 agtcacagtccaagtcaaagtgcaag 669
           ||||| ||| ||||||||||||||||
Sbjct: 649 agtcaaagtgcaagtcaaagtgcaag 624

 Score = 32.2 bits (16), Expect(5) = 2e-08
 Identities = 22/24 (91%)
 Strand = Plus / Minus


Query: 708 agtcaaagtgccactcaaagtgcc 731
           ||||||||||| | ||||||||||
Sbjct: 625 agtcaaagtgcaagtcaaagtgcc 602

 Score = 28.2 bits (14), Expect(5) = 2e-08
 Identities = 20/22 (90%)
 Strand = Plus / Minus


Query: 804 agtcaaagtgcaaaccaaagtg 825
           |||||||||||||  |||||||
Sbjct: 583 agtcaaagtgcaagtcaaagtg 562

 Score = 26.3 bits (13), Expect(5) = 2e-08
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 872 aagccaaagtgcc 884
           |||||||||||||
Sbjct: 524 aagccaaagtgcc 512

 Score = 42.1 bits (21), Expect(3) = 2e-06
 Identities = 30/33 (90%)
 Strand = Plus / Minus


Query: 708 agtcaaagtgccactcaaagtgccagtcaaagt 740
           ||||||||||| | ||||||||| |||||||||
Sbjct: 583 agtcaaagtgcaagtcaaagtgcaagtcaaagt 551

 Score = 36.2 bits (18), Expect(3) = 2e-06
 Identities = 24/26 (92%)
 Strand = Plus / Minus


Query: 644 agtcacagtccaagtcaaagtgcaag 669
           ||||| ||| ||||||||||||||||
Sbjct: 637 agtcaaagtgcaagtcaaagtgcaag 612

 Score = 34.2 bits (17), Expect(3) = 2e-06
 Identities = 20/21 (95%)
 Strand = Plus / Minus


Query: 854 tgcaagtcaaagtgtttcaag 874
           |||||||||||||||| ||||
Sbjct: 497 tgcaagtcaaagtgttgcaag 477

 Score = 46.1 bits (23), Expect(2) = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus


Query: 841 ctgcaaatcaaagtgcaagtcaaagtg 867
           |||||| ||||||||||||||||||||
Sbjct: 588 ctgcaagtcaaagtgcaagtcaaagtg 562

 Score = 36.2 bits (18), Expect(2) = 1e-05
 Identities = 39/46 (84%)
 Strand = Plus / Minus


Query: 780 agtcaaagtgctaatcatagcgctagtcaaagtgcaaaccaaagtg 825
           ||||||||||| | ||| || || |||||||||||||  |||||||
Sbjct: 649 agtcaaagtgcaagtcaaagtgcaagtcaaagtgcaagtcaaagtg 604

 Score = 44.1 bits (22), Expect(3) = 1e-04
 Identities = 34/38 (89%)
 Strand = Plus / Minus


Query: 708 agtcaaagtgccactcaaagtgccagtcaaagttcaag 745
           ||||||||||| | ||||||||| ||||||||| ||||
Sbjct: 649 agtcaaagtgcaagtcaaagtgcaagtcaaagtgcaag 612

 Score = 34.2 bits (17), Expect(3) = 1e-04
 Identities = 23/25 (92%)
 Strand = Plus / Minus


Query: 809 aagtgcaaaccaaagtgttgcaagt 833
           ||||| || ||||||||||||||||
Sbjct: 458 aagtggaagccaaagtgttgcaagt 434

 Score = 28.2 bits (14), Expect(3) = 1e-04
 Identities = 29/34 (85%)
 Strand = Plus / Minus


Query: 780 agtcaaagtgctaatcatagcgctagtcaaagtg 813
           ||||||||||| | ||| || || ||||||||||
Sbjct: 583 agtcaaagtgcaagtcaaagtgcaagtcaaagtg 550

 Score = 44.1 bits (22), Expect(2) = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus


Query: 842 tgcaaatcaaagtgcaagtcaaagtg 867
           ||||| ||||||||||||||||||||
Sbjct: 575 tgcaagtcaaagtgcaagtcaaagtg 550

 Score = 34.2 bits (17), Expect(2) = 2e-04
 Identities = 38/45 (84%)
 Strand = Plus / Minus


Query: 770 tcaaagcgctagtcaaagtgctaatcatagcgctagtcaaagtgc 814
           |||||| || ||||||||||| | ||| || || |||||||||||
Sbjct: 647 tcaaagtgcaagtcaaagtgcaagtcaaagtgcaagtcaaagtgc 603

 Score = 36.2 bits (18), Expect(3) = 4e-04
 Identities = 27/30 (90%)
 Strand = Plus / Minus


Query: 608 agtggaagccaaagtgtctcgtgtcaaaat 637
           |||||||||||||||| |||  ||||||||
Sbjct: 529 agtggaagccaaagtgcctcaagtcaaaat 500

 Score = 34.2 bits (17), Expect(3) = 4e-04
 Identities = 23/25 (92%)
 Strand = Plus / Minus


Query: 809 aagtgcaaaccaaagtgttgcaagt 833
           ||||| || ||||||||||||||||
Sbjct: 479 aagtggaagccaaagtgttgcaagt 455

 Score = 34.2 bits (17), Expect(3) = 4e-04
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 586 aagtggaagccaaagtg 602
           |||||||||||||||||
Sbjct: 542 aagtggaagccaaagtg 526

 Score = 44.1 bits (22), Expect(2) = 0.009
 Identities = 25/26 (96%)
 Strand = Plus / Minus


Query: 842 tgcaaatcaaagtgcaagtcaaagtg 867
           ||||| ||||||||||||||||||||
Sbjct: 629 tgcaagtcaaagtgcaagtcaaagtg 604

 Score = 28.2 bits (14), Expect(2) = 0.009
 Identities = 20/22 (90%)
 Strand = Plus / Minus


Query: 804 agtcaaagtgcaaaccaaagtg 825
           |||||||||||||  |||||||
Sbjct: 649 agtcaaagtgcaagtcaaagtg 628

 Score = 36.2 bits (18), Expect(3) = 0.061
 Identities = 36/42 (85%)
 Strand = Plus / Minus


Query: 708 agtcaaagtgccactcaaagtgccagtcaaagttcaagccaa 749
           ||||||||||| | ||||||||  |||||||||  |||||||
Sbjct: 571 agtcaaagtgcaagtcaaagtggaagtcaaagtggaagccaa 530

 Score = 32.2 bits (16), Expect(3) = 0.061
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 654 caagtcaaagtgcaag 669
           ||||||||||||||||
Sbjct: 585 caagtcaaagtgcaag 570

 Score = 28.2 bits (14), Expect(3) = 0.061
 Identities = 20/22 (90%)
 Strand = Plus / Minus


Query: 804 agtcaaagtgcaaaccaaagtg 825
           |||||||||||||  |||||||
Sbjct: 367 agtcaaagtgcaagtcaaagtg 346

 Score = 34.2 bits (17), Expect(3) = 2.7
 Identities = 23/25 (92%)
 Strand = Plus / Minus


Query: 544 aagtggaagccaaagtgttgcaagt 568
           ||||| || ||||||||||||||||
Sbjct: 215 aagtgcaaaccaaagtgttgcaagt 191

 Score = 28.2 bits (14), Expect(3) = 2.7
 Identities = 20/22 (90%)
 Strand = Plus / Minus


Query: 708 agtcaaagtgccactcaaagtg 729
           ||||||||||| | ||||||||
Sbjct: 115 agtcaaagtgcaagtcaaagtg 94

 Score = 28.2 bits (14), Expect(3) = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 526 tgcaagtcaaagtg 539
           ||||||||||||||
Sbjct: 359 tgcaagtcaaagtg 346

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 575,600,481
Number of extensions: 36371860
Number of successful extensions: 4891641
Number of sequences better than 10.0: 16
Length of query: 1022
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 998
Effective length of database: 97,308,875,965
Effective search space: 97114258213070
Effective search space used: 97114258213070
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10478-1 (Contig-U10478-1Q) /CSM_Contig/Contig-U10478-1Q.Seq.d
         (1022 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 480,012,296
Number of extensions: 4868530
Number of successful extensions: 7298
Number of sequences better than 10.0: 0
Number of HSP's gapped: 7290
Number of HSP's successfully gapped: 0
Length of query: 340
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 211
Effective length of database: 627,614,014
Effective search space: 132426556954
Effective search space used: 132426556954
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.89  gvh: 0.54  alm: 0.37  top: 0.70  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U10478-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0