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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10467-1
Contig ID Contig-U10467-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10467-1 (Contig-U10467-1Q) /CSM_Contig/Contig-U10467-1Q.Seq.d
NNNNNNNNNNAAAAATTCGATGCAACAATCATTGCATTAGTACCAAGTAC
AATTAGGTTTGATGGTTTATGTGATTTTCAATATCTTATTAAATCAGATA
ATAATAATACAAAATCAGAAAGTGATAATGTGAATGATAGTTCATCATCA
TCATCATCAAAAACAGTACCAATAACTAAACAAAAGGATCAATATTATGT
TCAACAATATAGTGATAATAATGAAATTATGAAAGATGAACCAATGAATT
TAATACCACCATTATTCTCAAGAATTGATTTCCCTCAAAATTATTTATTC
AAAGCTAATCCAAATGCTCAATTCGATAAAACATCAAAACAATTTGTTTT
TGCAAAACAAACTACTCGTAAAGCTACTGGTCATGCTAAATTTAATAATG
TAATCCCAGTTGCACCACAAGAATTACCAAAAGTATTTGGAGTAAATGAA
TTAATGAAAAAGACAAGGGATATATTAGTTGCACTTTTTGAGAAAAGACC
AATTTGGTTATATATATCATTATTGGATAAAGTTCAAAAAGAGGGTGGTT
TAGTAGCTCATACTAAAAGAGTATTACCATCATTAGCATTCAATTTCGTC
GATGGACCTTGGAGAAAATGTTGGGTTAAATTAGGTTTCGATCCAAGAAT
TCATCCTGAAACTTCTCAATATCAAACAATNATTTTAGAATTTCNAACAA
GATAATCATTAT
Gap no gap
Contig length 712
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3422571
End point 3421867
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U10467
List of clone(s) 

est1=VFL440Z,1,703
Translated Amino Acid sequence 
XXXXKFDATIIALVPSTIRFDGLCDFQYLIKSDNNNTKSESDNVNDSSSSSSSKTVPITK
QKDQYYVQQYSDNNEIMKDEPMNLIPPLFSRIDFPQNYLFKANPNAQFDKTSKQFVFAKQ
TTRKATGHAKFNNVIPVAPQELPKVFGVNELMKKTRDILVALFEKRPIWLYISLLDKVQK
EGGLVAHTKRVLPSLAFNFVDGPWRKCWVKLGFDPRIHPETSQYQTXILEFXTR*sl
Translated Amino Acid sequence (All Frames) 
Frame A:
XXXXKFDATIIALVPSTIRFDGLCDFQYLIKSDNNNTKSESDNVNDSSSSSSSKTVPITK
QKDQYYVQQYSDNNEIMKDEPMNLIPPLFSRIDFPQNYLFKANPNAQFDKTSKQFVFAKQ
TTRKATGHAKFNNVIPVAPQELPKVFGVNELMKKTRDILVALFEKRPIWLYISLLDKVQK
EGGLVAHTKRVLPSLAFNFVDGPWRKCWVKLGFDPRIHPETSQYQTXILEFXTR*sl


Frame B:
xxxknsmqqslh*yqvqlglmvyvifnillnqiiiiqnqkvim*mivhhhhhqkqyq*ln
krinimfnniviimkl*kmnq*i*yhhysqelislkiiyskliqmlnsikhqnnlflqnk
llvkllvmlnlim*sqlhhknyqkyle*mn**krqgiy*lhflrkdqfgyiyhywikfkk
rvv**lilkeyyhh*hsissmdlgenvgln*vsiqefilkllnikqxf*nfxqdnhy


Frame C:
xxxkircnnhcistkyn*v*wfm*fsisy*ir***ykirk**ce**fiiiiiknstnn*t
kgsilcsti*****nyer*tnefnttiilkn*fpsklfiqs*skcsir*nikticfcktn
ys*sywsc*i**cnpscttritksiwsk*inekdkgyisctf*ektnlviyiiig*sskr
gwfsssy*ksitiisiqfrrwtlekmlg*irfrsknss*nfsisnnxfrisnkiii
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10467-1 (Contig-U10467-1Q)
/CSM_Contig/Contig-U10467-1Q.Seq.d
         (712 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10467-1 (Contig-U10467-1Q) /CSM_Contig/Conti...  1084  0.0
Contig-U14093-1 (Contig-U14093-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U12244-1 (Contig-U12244-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U11855-1 (Contig-U11855-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U06231-1 (Contig-U06231-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U12056-1 (Contig-U12056-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11834-1 (Contig-U11834-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11341-1 (Contig-U11341-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U10991-1 (Contig-U10991-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U10467-1 (Contig-U10467-1Q) /CSM_Contig/Contig-U10467-1Q.Seq.d
          Length = 712

 Score = 1084 bits (547), Expect = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Plus

                                                                       
Query: 160 aaaacagtaccaataactaaacaaaaggatcaatattatgttcaacaatatagtgataat 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aaaacagtaccaataactaaacaaaaggatcaatattatgttcaacaatatagtgataat 219

                                                                       
Query: 220 aatgaaattatgaaagatgaaccaatgaatttaataccaccattattctcaagaattgat 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aatgaaattatgaaagatgaaccaatgaatttaataccaccattattctcaagaattgat 279

                                                                       
Query: 280 ttccctcaaaattatttattcaaagctaatccaaatgctcaattcgataaaacatcaaaa 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttccctcaaaattatttattcaaagctaatccaaatgctcaattcgataaaacatcaaaa 339

                                                                       
Query: 340 caatttgtttttgcaaaacaaactactcgtaaagctactggtcatgctaaatttaataat 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caatttgtttttgcaaaacaaactactcgtaaagctactggtcatgctaaatttaataat 399

                                                                       
Query: 400 gtaatcccagttgcaccacaagaattaccaaaagtatttggagtaaatgaattaatgaaa 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtaatcccagttgcaccacaagaattaccaaaagtatttggagtaaatgaattaatgaaa 459

                                                                       
Query: 460 aagacaagggatatattagttgcactttttgagaaaagaccaatttggttatatatatca 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aagacaagggatatattagttgcactttttgagaaaagaccaatttggttatatatatca 519

                                                                       
Query: 520 ttattggataaagttcaaaaagagggtggtttagtagctcatactaaaagagtattacca 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttattggataaagttcaaaaagagggtggtttagtagctcatactaaaagagtattacca 579

                                                                       
Query: 580 tcattagcattcaatttcgtcgatggaccttggagaaaatgttgggttaaattaggtttc 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcattagcattcaatttcgtcgatggaccttggagaaaatgttgggttaaattaggtttc 639

                                                                       
Query: 640 gatccaagaattcatcctgaaacttctcaatatcaaacaatnattttagaatttcnaaca 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gatccaagaattcatcctgaaacttctcaatatcaaacaatnattttagaatttcnaaca 699

                        
Query: 700 agataatcattat 712
           |||||||||||||
Sbjct: 700 agataatcattat 712


 Score =  260 bits (131), Expect = 2e-69
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  aaaaattcgatgcaacaatcattgcattagtaccaagtacaattaggtttgatggtttat 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aaaaattcgatgcaacaatcattgcattagtaccaagtacaattaggtttgatggtttat 70

                                                                       
Query: 71  gtgattttcaatatcttattaaatcagataataataatacaaaatcagaaagtgataatg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  gtgattttcaatatcttattaaatcagataataataatacaaaatcagaaagtgataatg 130

                      
Query: 131 tgaatgatagt 141
           |||||||||||
Sbjct: 131 tgaatgatagt 141


>Contig-U14093-1 (Contig-U14093-1Q) /CSM_Contig/Contig-U14093-1Q.Seq.d
          Length = 700

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 89  ttaaatcagataataataa 107
           |||||||||||||||||||
Sbjct: 636 ttaaatcagataataataa 654


>Contig-U12244-1 (Contig-U12244-1Q) /CSM_Contig/Contig-U12244-1Q.Seq.d
          Length = 1460

 Score = 36.2 bits (18), Expect = 0.050
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 88  attaaatcagataataataata 109
           |||||| |||||||||||||||
Sbjct: 148 attaaaacagataataataata 169


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,622
Number of Sequences: 6905
Number of extensions: 21622
Number of successful extensions: 1796
Number of sequences better than 10.0: 167
length of query: 712
length of database: 5,674,871
effective HSP length: 16
effective length of query: 696
effective length of database: 5,564,391
effective search space: 3872816136
effective search space used: 3872816136
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.20
Homology vs DNA 
Query= Contig-U10467-1 (Contig-U10467-1Q) /CSM_Contig/Contig-U10467-1Q.Seq.d
         (712 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ433957) Dictyostelium discoideum cDNA clone:ddv23p10, 3' ...  1084   0.0    2
(EU868611) Human enterovirus 71 isolate NUH0075/SIN/08 polyp...    52   0.029  1
(CS327670) Sequence 5 from Patent EP1674582.                       50   0.11   1
(AC131042) Homo sapiens chromosome 8, clone CTD-2607C6, comp...    50   0.11   1
(AC011200) Homo sapiens chromosome 8 clone RP11-71N3, comple...    50   0.11   1
(AC103723) Homo sapiens chromosome 8 clone RP11-719O18 map 8...    50   0.11   1
(AC090275) Homo sapiens chromosome 8 clone RP1-171I8 map 8, ...    50   0.11   1
(AC090262) Homo sapiens chromosome 8 clone RP11-71N3 map 8, ...    50   0.11   1
(AF215843) Homo sapiens chromosome 8 clone RP1-171I8 map 8qt...    50   0.11   1
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.24   7
(CU466294) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.27   4
(CZ542402) SRAA-aad44a01.b1 Strongyloides ratti whole genome...    44   0.32   2
(BX233101) Danio rerio genomic clone DKEY-246I5, genomic sur...    36   0.40   3
(CU928367) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.45   1
(AC178031) Strongylocentrotus purpuratus clone R3-3055J9, WO...    38   0.60   5
(EJ039238) 1095454084480 Global-Ocean-Sampling_GS-26-01-01-1...    44   1.3    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    40   1.5    10
(CR361552) Zebrafish DNA sequence from clone CH211-239J15 in...    34   1.5    7
(BX890570) Zebrafish DNA sequence from clone DKEYP-7F1 in li...    34   1.7    7
(AB059816) Enterovirus 71 gene for capsid protein VP1, parti...    46   1.8    1
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    46   1.8    1
(AC016673) Homo sapiens BAC clone RP11-17N4 from 2, complete...    46   1.8    1
(AC201160) Strongylocentrotus purpuratus clone R3-14G20, WOR...    46   1.8    1
(BH162893) ENTRW32TR Entamoeba histolytica Sheared DNA Entam...    46   1.8    1
(BH130871) ENTOM54TR Entamoeba histolytica Sheared DNA Entam...    46   1.8    1
(ED412428) AUAC-aba75b02.g1 Ascaris suum whole genome shotgu...    46   1.8    1
(ED199843) AUAC-aak19h10.b1 Ascaris suum whole genome shotgu...    46   1.8    1
(ED150603) AUAC-aav99d06.b1 Ascaris suum whole genome shotgu...    46   1.8    1
(AL014124) F.rubripes GSS sequence, clone 061G05aA12.              46   1.8    1
(DU084262) 283764 Tomato HindIII BAC Library Solanum lycoper...    46   1.8    1
(DE965516) Macropus eugenii DNA, BAC clone: MEB1-168J12_F, 5...    46   1.8    1
(CB284518) DF1276 Dermatophagoides farinae cDNA library Derm...    46   1.8    1
(BQ633622) PfESToab44d11.y1 Plasmodium falciparum 3D7 asexua...    46   1.8    1
(BQ452232) PfESToaa93h07.y1 Plasmodium falciparum 3D7 asexua...    46   1.8    1
(BQ451882) PfESToab09h10.y1 Plasmodium falciparum 3D7 asexua...    46   1.8    1
(BQ451131) PfESToab04b07.y1 Plasmodium falciparum 3D7 asexua...    46   1.8    1
(AC225944) Zea mays chromosome 10 clone CH201-127G5; ZMMBBc0...    34   1.9    8
(AC200957) Strongylocentrotus purpuratus clone R3-1109E1, WO...    38   2.1    4
(AC224198) Bos taurus clone CH240-446O15, WORKING DRAFT SEQU...    40   2.5    3
(AC206785) Zea mays chromosome 6 clone CH201-151P3; ZMMBBc01...    36   2.6    5
(BX842697) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   3.7    6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   3.7    11
(DW644558) CLJ378-B17.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    32   4.6    2
(AL929222) Zebrafish DNA sequence from clone DKEY-31N5.            34   5.1    8
(AL359760) Human DNA sequence from clone RP11-556K13 on chro...    40   5.1    4
(AC120739) Rattus norvegicus clone CH230-515A22, WORKING DRA...    40   5.2    2
(AC091840) Homo sapiens chromosome 5 clone CTD-2116N8, WORKI...    42   5.4    3
(AC181843) Strongylocentrotus purpuratus clone R3-1022E6, WO...    38   5.7    4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   5.9    9
(AC210021) Zea mays chromosome 5 clone CH201-504P20; ZMMBBc0...    36   6.0    6
(AC204756) Zea mays chromosome 6 clone CH201-562A11; ZMMBBc0...    34   6.1    6
(CT025914) Zebrafish DNA sequence from clone DKEY-42A21 in l...    34   6.4    8
(CR812847) Zebrafish DNA sequence from clone DKEY-9I15 in li...    36   6.5    4
(AC121234) Medicago truncatula chromosome 8 clone mth2-19o7,...    34   6.7    6
(BX901912) Zebrafish DNA sequence from clone CH211-212D2 in ...    44   7.1    1
(BX004779) Zebrafish DNA sequence from clone CH211-14K19 in ...    44   7.1    1
(BC159173) Xenopus tropicalis cDNA clone MGC:172876 IMAGE:76...    44   7.1    1
(EF063152) Human enterovirus 71 strain E2005125-TW polyprote...    44   7.1    1
(DQ868521) Human enterovirus 71 isolate E2006249-TW VP1 stru...    44   7.1    1
(DQ846663) Human enterovirus 71 isolate NTU1551-TW-06 VP1 st...    44   7.1    1
(DQ846662) Human enterovirus 71 isolate NTU1482-TW-06 VP1 st...    44   7.1    1
(DQ841970) Human enterovirus 71 isolate E200510989-TW struct...    44   7.1    1
(DQ841969) Human enterovirus 71 isolate E20051509-TW structu...    44   7.1    1
(DQ841968) Human enterovirus 71 isolate E20051501-TW structu...    44   7.1    1
(DQ830977) Human enterovirus 71 isolate 2006-125 VP1 gene, p...    44   7.1    1
(AM490163) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490162) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490161) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490160) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490158) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490153) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490150) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490148) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490146) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490145) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490144) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490143) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490142) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AM490141) Human enterovirus A partial gene for polyprotein,...    44   7.1    1
(AF135951) Enterovirus 71 strain 7237-AK-87 capsid protein V...    44   7.1    1
(BV316166) S236P687RE3.T0 AlaskanMalamute Canis familiaris S...    44   7.1    1
(AC187734) Pan troglodytes BAC clone CH251-481K15 from chrom...    44   7.1    1
(AC146125) Pan troglodytes BAC clone RP43-4K13 from chromoso...    44   7.1    1
(AB010073) Arabidopsis thaliana genomic DNA, chromosome 5, P...    44   7.1    1
(AB049972) Dugesia japonica mRNA for Hox class homeodomain p...    44   7.1    1
(AC004849) Homo sapiens PAC clone RP4-659J6 from 7, complete...    44   7.1    1
(AC144606) Canis familiaris clone RP81-419N22, WORKING DRAFT...    44   7.1    1
(AC133985) Rattus norvegicus clone CH230-2D6, WORKING DRAFT ...    44   7.1    1
(AC121433) Rattus norvegicus clone CH230-195J19, *** SEQUENC...    44   7.1    1
(AC104402) Rattus norvegicus clone CH230-133L9, *** SEQUENCI...    44   7.1    1
(CT573226) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.1    1
(AZ677905) ENTKD58TF Entamoeba histolytica Sheared DNA Entam...    44   7.1    1
(AZ676018) ENTKF30TF Entamoeba histolytica Sheared DNA Entam...    44   7.1    1
(EK276541) 1095462279719 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.1    1
(EK224003) 1095460151428 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.1    1
(EK154540) 1095456068529 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.1    1
(EJ426416) 1093015231084 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.1    1
(EI146068) DH004B18_F1.ab1 Brachypodium distachyon Bd21 Hind...    44   7.1    1
(CL489232) SAIL_51_E05.v1 SAIL Collection Arabidopsis thalia...    44   7.1    1
(CE482792) tigr-gss-dog-17000363203027 Dog Library Canis lup...    44   7.1    1

>(BJ433957) Dictyostelium discoideum cDNA clone:ddv23p10, 3' end,
           single read.
          Length = 703

 Score = 1084 bits (547), Expect(2) = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Minus


Query: 160 aaaacagtaccaataactaaacaaaaggatcaatattatgttcaacaatatagtgataat 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaacagtaccaataactaaacaaaaggatcaatattatgttcaacaatatagtgataat 495


Query: 220 aatgaaattatgaaagatgaaccaatgaatttaataccaccattattctcaagaattgat 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aatgaaattatgaaagatgaaccaatgaatttaataccaccattattctcaagaattgat 435


Query: 280 ttccctcaaaattatttattcaaagctaatccaaatgctcaattcgataaaacatcaaaa 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttccctcaaaattatttattcaaagctaatccaaatgctcaattcgataaaacatcaaaa 375


Query: 340 caatttgtttttgcaaaacaaactactcgtaaagctactggtcatgctaaatttaataat 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caatttgtttttgcaaaacaaactactcgtaaagctactggtcatgctaaatttaataat 315


Query: 400 gtaatcccagttgcaccacaagaattaccaaaagtatttggagtaaatgaattaatgaaa 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtaatcccagttgcaccacaagaattaccaaaagtatttggagtaaatgaattaatgaaa 255


Query: 460 aagacaagggatatattagttgcactttttgagaaaagaccaatttggttatatatatca 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagacaagggatatattagttgcactttttgagaaaagaccaatttggttatatatatca 195


Query: 520 ttattggataaagttcaaaaagagggtggtttagtagctcatactaaaagagtattacca 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttattggataaagttcaaaaagagggtggtttagtagctcatactaaaagagtattacca 135


Query: 580 tcattagcattcaatttcgtcgatggaccttggagaaaatgttgggttaaattaggtttc 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tcattagcattcaatttcgtcgatggaccttggagaaaatgttgggttaaattaggtttc 75


Query: 640 gatccaagaattcatcctgaaacttctcaatatcaaacaatnattttagaatttcnaaca 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gatccaagaattcatcctgaaacttctcaatatcaaacaatnattttagaatttcnaaca 15


Query: 700 agataatcattat 712
           |||||||||||||
Sbjct: 14  agataatcattat 2

 Score =  260 bits (131), Expect(2) = 0.0
 Identities = 131/131 (100%)
 Strand = Plus / Minus


Query: 11  aaaaattcgatgcaacaatcattgcattagtaccaagtacaattaggtttgatggtttat 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aaaaattcgatgcaacaatcattgcattagtaccaagtacaattaggtttgatggtttat 644


Query: 71  gtgattttcaatatcttattaaatcagataataataatacaaaatcagaaagtgataatg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gtgattttcaatatcttattaaatcagataataataatacaaaatcagaaagtgataatg 584


Query: 131 tgaatgatagt 141
           |||||||||||
Sbjct: 583 tgaatgatagt 573

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 889,368,534
Number of extensions: 60154216
Number of successful extensions: 4966757
Number of sequences better than 10.0: 112
Length of query: 712
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 688
Effective length of database: 97,308,875,965
Effective search space: 66948506663920
Effective search space used: 66948506663920
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10467-1 (Contig-U10467-1Q) /CSM_Contig/Contig-U10467-1Q.Seq.d
         (712 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN357420_10(FN357420|pid:none) Schistosoma mansoni genome sequen...    78   2e-13
BC027247_1(BC027247|pid:none) Mus musculus general transcription...    77   4e-13
BC009741_1(BC009741|pid:none) Homo sapiens general transcription...    77   5e-13
(Q9H4P2) RecName: Full=General transcription factor 3C polypepti...    77   5e-13
AF133124_1(AF133124|pid:none) Homo sapiens transcription factor ...    77   5e-13
AK097295_1(AK097295|pid:none) Homo sapiens cDNA FLJ39976 fis, cl...    77   5e-13
BC030157_1(BC030157|pid:none) Homo sapiens general transcription...    77   5e-13
AB168625_1(AB168625|pid:none) Macaca fascicularis testis cDNA cl...    77   5e-13
CR380956_422(CR380956|pid:none) Candida glabrata strain CBS138 c...    71   4e-11
CU928175_705(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    70   8e-11
(P32367) RecName: Full=Transcription factor tau 95 kDa subunit; ...    68   2e-10
AM920436_1553(AM920436|pid:none) Penicillium chrysogenum Wiscons...    67   5e-10
BC077509_1(BC077509|pid:none) Xenopus laevis hypothetical protei...    67   7e-10
CU928170_486(CU928170|pid:none) Kluyveromyces thermotolerans str...    66   9e-10
AK229045_1(AK229045|pid:none) Arabidopsis thaliana mRNA for hypo...    65   2e-09
AK293980_1(AK293980|pid:none) Homo sapiens cDNA FLJ54733 complet...    64   5e-09
CU640366_1264(CU640366|pid:none) Podospora anserina genomic DNA ...    63   8e-09
AM270026_22(AM270026|pid:none) Aspergillus niger contig An02c031...    63   8e-09
AE016817_25(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    63   1e-08
AL132964_1(AL132964|pid:none) Arabidopsis thaliana DNA chromosom...    62   2e-08
AE014134_3149(AE014134|pid:none) Drosophila melanogaster chromos...    62   2e-08
AB025641_2(AB025641|pid:none) Arabidopsis thaliana genomic DNA, ...    62   2e-08
BT021274_1(BT021274|pid:none) Drosophila melanogaster RE46634 fu...    62   2e-08
T24351(T24351) hypothetical protein T02C12.3 - Caenorhabditis el...    60   5e-08
AC012329_11(AC012329|pid:none) Arabidopsis thaliana chromosome 1...    60   7e-08
AY065092_1(AY065092|pid:none) Arabidopsis thaliana unknown prote...    59   1e-07
CR940347_765(CR940347|pid:none) Theileria annulata strain Ankara...    57   6e-07
CR382134_134(CR382134|pid:none) Debaryomyces hansenii strain CBS...    56   9e-07
AM114792_1(AM114792|pid:none) Platynereis dumerilii partial gtf3...    56   9e-07
AM910995_93(AM910995|pid:none) Plasmodium knowlesi strain H chro...    56   9e-07
AL513466_11(AL513466|pid:none) Neurospora crassa DNA linkage gro...    56   1e-06
AE014188_104(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    54   5e-06
T11662(T11662)probable transcription factor 44K chain - fission ...    52   2e-05
AJ719580_1(AJ719580|pid:none) Gallus gallus mRNA for hypothetica...    52   2e-05
CP000882_141(CP000882|pid:none) Hemiselmis andersenii chromosome...    51   3e-05
AM269976_46(AM269976|pid:none) Aspergillus niger contig An01c029...    50   7e-05
AL590448_176(AL590448|pid:none) chromosome VIII of strain GB-M1 ...    48   3e-04
CP000585_47(CP000585|pid:none) Ostreococcus lucimarinus CCE9901 ...    48   3e-04
AP003370_4(AP003370|pid:none) Oryza sativa Japonica Group genomi...    46   0.001
AP008207_1500(AP008207|pid:none) Oryza sativa (japonica cultivar...    46   0.001
AM431899_5(AM431899|pid:none) Vitis vinifera contig VV78X190886....    44   0.004
AL162417_4(AL162417|pid:none) Human DNA sequence from clone RP11...    41   0.032
AP007150_210(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...    40   0.054
AM494967_381(AM494967|pid:none) Leishmania braziliensis chromoso...    34   5.0
AM502248_426(AM502248|pid:none) Leishmania infantum chromosome 30.     33   6.6
CP000903_1742(CP000903|pid:none) Bacillus weihenstephanensis KBA...    33   8.6

>FN357420_10(FN357420|pid:none) Schistosoma mansoni genome sequence
           supercontig Smp_scaff000129.
          Length = 486

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
 Frame = +1

Query: 226 IMKDEPMNLIPPLFSRIDFPQNYLF----KANPNAQFDKTSKQFVFAKQTTRKATGHAKF 393
           + +D P+ L P LFSR D P  Y F    +     Q ++ S +   +++
Sbjct: 151 LSRDMPLYLPPVLFSRQDTPSFYNFAPRYRTTEYIQLEEKSHKLPVSRKARPTFGYLVNL 210

Query: 394 NNVIPVAPQE--LPKVFGVNELMKKTRDILVALFEKRPIWLYISLLDKVQKEGGLVAHTK 567
           ++V P +P+   + +V  +     + +D +  LF++RPIW+  +L   +  +  L+  T+
Sbjct: 211 DDVTPTSPRPGAIQRVINLGLSAIQVKDEIQKLFDERPIWMRPALAYHMPADTRLIYFTQ 270

Query: 568 RVLPSLAFNFVDGPWRKCWVKLGFDPRIHPETSQYQ 675
            +LPS+A+  + GPW + WV+ G+DPR  PE  +YQ
Sbjct: 271 -ILPSVAYYMIRGPWSRAWVRYGYDPRKDPEARRYQ 305

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 933,882,362
Number of extensions: 16606353
Number of successful extensions: 33348
Number of sequences better than 10.0: 46
Number of HSP's gapped: 33276
Number of HSP's successfully gapped: 47
Length of query: 237
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 112
Effective length of database: 640,431,154
Effective search space: 71728289248
Effective search space used: 71728289248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.92  gvh: 0.36  alm: 0.40  top: 0.40  tms: 0.00  mit: 0.22  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane

>> prediction for Contig-U10467-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0