Contig-U01677-1
Contig ID Contig-U01677-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01677-1 (Contig-U01677-1Q) /CSM_Contig/Contig-U01677-1Q.Seq.d
GCACATTAAATTTAAGTTTATTATTAAACCTAAAAAAAAAAAAAAAAAAA
AAAAAAAACACAATTTTAAAATTATACCACTATTATAAAAAAAAAAAAAA
TATATTTATAACTATATAAATAACTGCATATATATACCTTTATTAAAAAA
TGACAATCTACGAACCACAATCATCAGAAGAAACCTATACAAAAATTAGA
AATACATCAAGAGTTTTAGTTATGGTTAGTGCACAATGGTGTATTCAATG
TCATAATTTTACACATTATTATGAAAAAGCAAGTAATAAATTAAGTTCAT
TCTTATTTTTAAAAGTTGATTATGATAAATGTCCTGAAATGTATAAAGAA
AATAAAAGTGTTGAAAAGGTACCAACATTCATTTTATATATTGATGGTAT
TGAAACAAAAAGATTTGATAGTTATATAAAAACCAACCTCGATAAAATGG
TAAAGAATTATACAGCTTAGAAATAAATAAACAAAAAAAAAAAAAAATAA
AATAAAAATAAAAAAAAAAAAAAAAAAAAACACACACAACGCACATTAAA
TTTAAGTTTATTATTAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAA---
-------ATTTTACCGCTTTGGAATTAATTAACCAAAAAACCAAAAAAAA
AACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTAATTTGTATTAATAT
ATAATAATATAAATCTTTTTTTTTTTTTTTTTTTTTATTGAAAAATAAAA
AAAATAAAAAAAAAAACAAAAACAAAAAAAAACAAACCCCCTTTTTTTTC
AGTTTTAAAACAAATACATTTGTATTGTACATAATAAAATAAAAGAATAA
TAAAAAATTTTAA

Gap gap included
Contig length 853
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 5
Number of EST 7
Link to clone list U01677
List of clone(s)

est1=SSM328Z,1,539
est2=SSE819Z,123,515
est3=SSB230Z,199,583
est4=SSC668F,405,597
est5=SSE364F,407,598
est6=SSB230F,415,530
est7=SSE364Z,599,855
Translated Amino Acid sequence
tlnlslllnlkkkkkkkkntilklyhyykkkknifiti*itayiyly*kmtiyepqssee
tytkirntsrvlvmvsaqwciqchnfthyyekasnklssflflkvdydkcpemykenksv
ekvptfilyidgietkrfdsyiktnldkmvknyta*k*inkkkkk*NKNKKKKKKKHTQR
TLNLSLLLNLKKKKKKKK---

---FTALELINQKTKKKTKKKKKKKKKR*fvliynninlffffffy*kikkikkktktkk
nkppffsvlkqihlyct**nkriiknf


Translated Amino Acid sequence (All Frames)
Frame A:
ah*i*vyy*t*kkkkkkkktqf*nyttiikkkkiyl*lyk*lhiytfikk*qstnhnhqk
kpiqkleihqef*lwlvhngvfnviilhiimkkqvin*vhsyf*kliminvlkcikkikv
lkryqhsfyilmvlkqkdlivi*kptsikw*riiqlrnk*tkkkknkikikkkkkknthn
ah*i*vyy*t*kkkkkkkk---

---ilplwn*ltkkpkkkpkkkkkkkkkgnly*yiii*ifffffffiek*kk*kkkqkqk
ktnplffqf*nkyicivhnkike**kil

Frame B:
hikfkfiikpkkkkkkkkkhnfkiipll*kkkkyiynyinnciyipllkndnlrttiirr
nlykn*kyiksfsyg*ctmvysms*fytll*ksk**ikfilifks*l**ms*nv*rk*kc
*kgtnihfiy*wy*nkki**lyknqpr*ngkelysleinkqkkkkik*k*kkkkkkthtt
hikfkfiikpkkkkkkkk---

---fyrfgin*pknqkknqkkkkkkkkkvicini**yksffffffllknkknkkknknkk
kqtpfffsfktntfvlyiik*knnkkf*

Frame C:
tlnlslllnlkkkkkkkkntilklyhyykkkknifiti*itayiyly*kmtiyepqssee
tytkirntsrvlvmvsaqwciqchnfthyyekasnklssflflkvdydkcpemykenksv
ekvptfilyidgietkrfdsyiktnldkmvknyta*k*inkkkkk*NKNKKKKKKKHTQR
TLNLSLLLNLKKKKKKKK---

---FTALELINQKTKKKTKKKKKKKKKR*fvliynninlffffffy*kikkikkktktkk
nkppffsvlkqihlyct**nkriiknf

own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01677-1 (Contig-U01677-1Q)
/CSM_Contig/Contig-U01677-1Q.Seq.d
(863 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01677-1 (Contig-U01677-1Q) /CSM_Contig/Conti... 686 0.0
Contig-U11742-1 (Contig-U11742-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U10375-1 (Contig-U10375-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U12209-1 (Contig-U12209-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U11159-1 (Contig-U11159-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U10352-1 (Contig-U10352-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U02881-1 (Contig-U02881-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U13053-1 (Contig-U13053-1Q) /CSM_Contig/Conti... 34 0.33
Contig-U12256-1 (Contig-U12256-1Q) /CSM_Contig/Conti... 34 0.33

>Contig-U01677-1 (Contig-U01677-1Q) /CSM_Contig/Contig-U01677-1Q.Seq.d
Length = 863

Score = 686 bits (346), Expect = 0.0
Identities = 346/346 (100%)
Strand = Plus / Plus


Query: 137 cctttattaaaaaatgacaatctacgaaccacaatcatcagaagaaacctatacaaaaat 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cctttattaaaaaatgacaatctacgaaccacaatcatcagaagaaacctatacaaaaat 196


Query: 197 tagaaatacatcaagagttttagttatggttagtgcacaatggtgtattcaatgtcataa 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tagaaatacatcaagagttttagttatggttagtgcacaatggtgtattcaatgtcataa 256


Query: 257 ttttacacattattatgaaaaagcaagtaataaattaagttcattcttatttttaaaagt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttacacattattatgaaaaagcaagtaataaattaagttcattcttatttttaaaagt 316


Query: 317 tgattatgataaatgtcctgaaatgtataaagaaaataaaagtgttgaaaaggtaccaac 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgattatgataaatgtcctgaaatgtataaagaaaataaaagtgttgaaaaggtaccaac 376


Query: 377 attcattttatatattgatggtattgaaacaaaaagatttgatagttatataaaaaccaa 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attcattttatatattgatggtattgaaacaaaaagatttgatagttatataaaaaccaa 436


Query: 437 cctcgataaaatggtaaagaattatacagcttagaaataaataaac 482
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cctcgataaaatggtaaagaattatacagcttagaaataaataaac 482


Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus


Query: 531 cacacacaacgcacattaaatttaagtttattattaaacct 571
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cacacacaacgcacattaaatttaagtttattattaaacct 571


Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 683 ggtaatttgtattaatatataataatataaatc 715
|||||||||||||||||||||||||||||||||
Sbjct: 683 ggtaatttgtattaatatataataatataaatc 715


Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 1 gcacattaaatttaagtttattattaaacct 31
|||||||||||||||||||||||||||||||
Sbjct: 1 gcacattaaatttaagtttattattaaacct 31


Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 800 cagttttaaaacaaatacatttgtattgtac 830
|||||||||||||||||||||||||||||||
Sbjct: 800 cagttttaaaacaaatacatttgtattgtac 830


Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 541 gcacattaaatttaagtttattattaaacct 571
|||||||||||||||||||||||||||||||
Sbjct: 1 gcacattaaatttaagtttattattaaacct 31


Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 1 gcacattaaatttaagtttattattaaacct 31
|||||||||||||||||||||||||||||||
Sbjct: 541 gcacattaaatttaagtttattattaaacct 571


Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 59 cacaattttaaaattataccactattat 86
||||||||||||||||||||||||||||
Sbjct: 59 cacaattttaaaattataccactattat 86


Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 608 attttaccgctttggaattaattaacc 634
|||||||||||||||||||||||||||
Sbjct: 608 attttaccgctttggaattaattaacc 634


>Contig-U11742-1 (Contig-U11742-1Q) /CSM_Contig/Contig-U11742-1Q.Seq.d
Length = 7350

Score = 38.2 bits (19), Expect = 0.021
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 139 tttattaaaaaatgacaat 157
|||||||||||||||||||
Sbjct: 1421 tttattaaaaaatgacaat 1439


>Contig-U10375-1 (Contig-U10375-1Q) /CSM_Contig/Contig-U10375-1Q.Seq.d
Length = 1084

Score = 38.2 bits (19), Expect = 0.021
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 285 aataaattaagttcattcttatt 307
|||||||||| ||||||||||||
Sbjct: 75 aataaattaatttcattcttatt 97


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,664
Number of Sequences: 8361
Number of extensions: 21664
Number of successful extensions: 1936
Number of sequences better than 10.0: 189
length of query: 863
length of database: 7,895,291
effective HSP length: 16
effective length of query: 847
effective length of database: 7,761,515
effective search space: 6574003205
effective search space used: 6574003205
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 3
Homology vs DNA
Query= Contig-U01677-1 (Contig-U01677-1Q) /CSM_Contig/Contig-U01677-1Q.Seq.d
(863 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU039056) Dictyostelium discoideum slug cDNA, clone SSM328. 658 0.0 2
(C92490) Dictyostelium discoideum slug cDNA, clone SSE819. 642 e-180 1
(AU037054) Dictyostelium discoideum slug cDNA, clone SSB230. 545 e-167 2
(AU037846) Dictyostelium discoideum slug cDNA, clone SSE364. 66 1e-27 3
(AU071873) Dictyostelium discoideum slug cDNA, clone SSC668. 80 2e-10 1
(AU072380) Dictyostelium discoideum slug cDNA, clone SSE364. 76 2e-09 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 4e-04 13
(AC107704) Mus musculus chromosome 7, clone RP24-121L4, comp... 54 0.009 1
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 40 0.040 10
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 0.048 7
(EK333777) 1095467033394 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.12 2
(ER497126) 1093015353162 Global-Ocean-Sampling_GS-35-01-01-1... 40 0.14 2
(AC174596) Mus musculus BAC clone RP24-411K2 from chromosome... 50 0.14 1
(AC158904) Mus musculus chromosome 19, clone RP23-16C24, com... 50 0.14 1
(AC107787) Mus musculus chromosome 1, clone RP23-432F10, com... 50 0.14 1
(AC102610) Mus musculus chromosome 19, clone RP23-411P21, co... 50 0.14 1
(AC218874) Tupaia belangeri clone CH275-269J8, WORKING DRAFT... 50 0.14 1
(FC470171) CAXH5296.rev CAXH Mnemiopsis leidyi whole animal ... 38 0.41 2
(FC465415) CAXH2976.rev CAXH Mnemiopsis leidyi whole animal ... 38 0.41 2
(FC476032) CAXH808.rev CAXH Mnemiopsis leidyi whole animal G... 38 0.41 2
(FC464275) CAXH2387.rev CAXH Mnemiopsis leidyi whole animal ... 38 0.41 2
(FC464761) CAXH2638.rev CAXH Mnemiopsis leidyi whole animal ... 38 0.41 2
(FC475813) CAXH7976.rev CAXH Mnemiopsis leidyi whole animal ... 38 0.41 2
(DB404450) Asterina pectinifera cDNA clone:ape17g14, 3' end. 36 0.41 2
(DB431423) Asterina pectinifera cDNA clone:apg12l09, 3' end. 36 0.41 2
(FC463394) CAXH1937.rev CAXH Mnemiopsis leidyi whole animal ... 38 0.41 2
(FC463926) CAXH2208.rev CAXH Mnemiopsis leidyi whole animal ... 38 0.41 2
(BD453025) Diagnosis of Diseases Associated with tumor suppr... 36 0.45 7
(AX344503) Sequence 350 from Patent WO0200926. 36 0.45 7
(AX251504) Sequence 472 from Patent WO0168912. 36 0.45 7
(CU468271) Zebrafish DNA sequence from clone CH73-350K19 in ... 48 0.56 1
(EJ959133) 1093018990754 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ943133) 1093018898181 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(BX188634) Danio rerio genomic clone DKEY-201L18, genomic su... 48 0.56 1
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 0.59 8
(EU292753) Theileria sp. sheep/China1 Tl137 mRNA, partial se... 44 1.0 2
(AL672072) Zebrafish DNA sequence from clone BUSM1-55H21 in ... 36 1.5 6
(AG450466) Mus musculus molossinus DNA, clone:MSMg01-335C05.... 44 1.5 2
(AL357506) Human DNA sequence from clone RP11-327K21 on chro... 40 1.5 5
(DN569753) 90236384 Sea Urchin primary mesenchyme cell cDNA ... 36 1.5 2
(CR107112) Forward strand read from insert in 5'HPRT inserti... 40 1.5 2
(AL672171) Zebrafish DNA sequence from clone BUSM1-270G24 in... 36 1.6 5
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 36 1.8 8
(AC004014) Homo sapiens BAC clone CTB-22K14 from 7, complete... 36 1.9 5
(AM428338) Vitis vinifera contig VV78X240448.25, whole genom... 36 2.1 3
(CT025880) Mouse DNA sequence from clone RP23-266N10 on chro... 46 2.2 1
(AC153852) Mus musculus 10 BAC RP23-136F8 (Roswell Park Canc... 46 2.2 1
(AC118202) Mus musculus chromosome 10, clone RP23-378J3, com... 46 2.2 1
(AC113096) Mus musculus chromosome 14, clone RP23-312M23, co... 46 2.2 1
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 46 2.2 1
(AC153451) Bos taurus clone CH240-20E7, WORKING DRAFT SEQUEN... 46 2.2 1
(FI204249) CccaBa026-K22TV CccABa Cajanus cajan genomic clon... 46 2.2 1
(FI135982) CsB10STC_29C24F_812 ends of BAC library of B10 li... 46 2.2 1
(DX541512) GH_MBb0038D24f GH_MBb Gossypium hirsutum genomic ... 46 2.2 1
(CW240336) 104_699_11218158_148_37539_031 Sorghum methylatio... 46 2.2 1
(CL483452) SAIL_37b_H04.v1 SAIL Collection Arabidopsis thali... 46 2.2 1
(BZ856959) CH240_285H1.TJ CHORI-240 Bos taurus genomic clone... 46 2.2 1
(AP010300) Lotus japonicus genomic DNA, chromosome 6, clone:... 38 2.2 4
(DE510802) Bombyx mori genomic DNA, Fosmid clone:GBMFno126_g... 34 2.6 2
(CU326355) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.6 4
(BX936378) Zebrafish DNA sequence from clone DKEY-8L19 in li... 40 2.7 4
(AC011809) Arabidopsis thaliana chromosome I BAC F6A14 genom... 44 2.7 2
(BX927101) Zebrafish DNA sequence from clone CH211-120F16 in... 40 3.0 6
(DE185829) Bombyx mori genomic DNA, Fosmid clone:RO0341-E07_R. 30 3.3 3
(FJ411411) Acyrthosiphon pisum strain 5A mitochondrion, comp... 36 3.3 3
(CR405705) Zebrafish DNA sequence from clone DKEY-64E13 in l... 36 3.4 7
(AG453548) Mus musculus molossinus DNA, clone:MSMg01-339D05.... 44 3.6 2
(AC219589) Bos taurus clone CH240-328J5, WORKING DRAFT SEQUE... 36 3.7 4
(ES567604) TPAF-aab97g04.g1 T.spiralis_EST Trichinella spira... 34 3.9 2
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 3.9 8
(BD460285) Diagnosis of Diseases Associated with Cell Cycle. 42 3.9 2
(BD452207) Diagnosis of Diseases Associated with Cell Cycle. 42 3.9 2
(AX348606) Sequence 64 from Patent WO0202807. 42 3.9 2
(AX344207) Sequence 54 from Patent WO0200926. 42 3.9 2
(AX251821) Sequence 82 from Patent WO0168911. 42 3.9 2
(AC119784) Rattus norvegicus clone CH230-143A5, *** SEQUENCI... 32 4.2 2
(AC008417) Homo sapiens chromosome 5 clone CTC-287O8, comple... 32 4.2 2
(AC186384) Pan troglodytes BAC clone CH251-680J1 from chromo... 32 4.2 2
(AC168959) Oryctolagus cuniculus clone LB1-274P2, WORKING DR... 34 4.2 2
(AC169139) Oryctolagus cuniculus clone LB1-237P21, WORKING D... 34 4.2 2
(GC700725) Sequence 15970 from patent US 6812339. 32 4.2 2
(AC011366) Homo sapiens chromosome 5 clone CTC-568L21, compl... 32 4.3 2
(AC121906) Mus musculus BAC clone RP24-176E21 from chromosom... 34 4.3 2
(CR751541) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 4.3 6
(CT737352) Human DNA sequence from clone XX-HCC1954_35H21. 32 4.3 2
(AL390815) Human chromosome 14 DNA sequence BAC R-129M6 of l... 32 4.3 2
(AC187573) Rhesus macaque BAC clone CH250-29H12 from chromos... 32 4.3 2
(AC222203) Bos taurus clone CH240-412A20, WORKING DRAFT SEQU... 42 4.3 3
(AC022624) Homo sapiens clone RP11-24B6, LOW-PASS SEQUENCE S... 32 4.4 2
(AL360267) Human DNA sequence from clone RP11-342C20 on chro... 42 4.5 5
(BV250261) S234P6310RA7.T0 EnglishShepherd Canis familiaris ... 32 4.5 3
(DL429102) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 42 4.6 2
(DJ295551) Method for identification of useful proteins deri... 42 4.6 2
(AC146170) Pan troglodytes BAC clone RP43-24J7 from chromoso... 36 4.8 5
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 4.9 14
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 38 4.9 8
(CR854962) Zebrafish DNA sequence from clone CH211-207K7 in ... 40 5.2 7
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 32 5.6 10
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 34 5.7 9
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 5.8 9
(DR716841) AGENCOURT_55092304 NIH_ZGC_7 Danio rerio cDNA clo... 38 5.9 2
(CT787592) Paramecium tetraurelia 5-PRIME EST from clone LK0... 42 6.2 2
(AX347003) Sequence 2074 from Patent WO0200928. 34 6.2 4
(BH589522) BOGDE93TF BOGD Brassica oleracea genomic clone BO... 34 6.5 2
(CT030718) Zebrafish DNA sequence from clone DKEYP-12H3 in l... 38 6.5 5
(EY912042) RR3E505JQ RR3(NY) Raphanus raphanistrum subsp. ra... 40 6.6 2
(AC209594) Chlorocebus aethiops clone CH252-194N17, WORKING ... 40 7.0 5
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 7.1 16
(DD194611) Method and nucleic acids for the analysis of a co... 36 7.2 5
(DD194609) Method and nucleic acids for the analysis of a co... 36 7.2 5
(AX825171) Sequence 5 from Patent WO03072812. 36 7.2 5
(AX825169) Sequence 3 from Patent WO03072812. 36 7.2 5
(AL844509) Plasmodium falciparum chromosome 13. 38 7.5 9
(DE144607) Bombyx mori genomic DNA, Fosmid clone:RO0282-O02_R. 30 8.2 3
(CP000395) Borrelia afzelii PKo, complete genome. 32 8.2 12
(CR394540) Zebrafish DNA sequence from clone DKEYP-10E10 in ... 40 8.5 6
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 36 8.7 14
(AC110544) Mus musculus chromosome 3, clone RP23-112A11, com... 44 8.8 1
(AC107743) Mus musculus chromosome 1, clone RP23-326A12, com... 44 8.8 1
(AC167784) Glycine max clone gmp1-71h23, complete sequence. 44 8.8 1
(AC153161) Glycine max clone gmw1-77p13, complete sequence. 44 8.8 1
(Z68336) Caenorhabditis elegans Cosmid F22B3. 44 8.8 1
(DQ088967) Homo sapiens calcium-sensing receptor (hypocalciu... 44 8.8 1
(AC083798) Homo sapiens 3q BAC RP11-299J3 (Roswell Park Canc... 44 8.8 1
(AC134476) Rattus norvegicus clone CH230-206P16, *** SEQUENC... 44 8.8 1
(AC119644) Rattus norvegicus clone CH230-153G7, *** SEQUENCI... 44 8.8 1
(AC119055) Papio anubis clone RP41-146J1, WORKING DRAFT SEQU... 44 8.8 1
(AC114468) Rattus norvegicus clone CH230-44L6, *** SEQUENCIN... 44 8.8 1
(AC103903) Canis lupus familiaris clone RP81-211N5, WORKING ... 44 8.8 1
(AC103148) Rattus norvegicus clone CH230-35N20, WORKING DRAF... 44 8.8 1
(AC100399) Mus musculus clone RP23-134E8, LOW-PASS SEQUENCE ... 44 8.8 1
(AC099435) Rattus norvegicus clone CH230-97E3, *** SEQUENCIN... 44 8.8 1
(AC096811) Rattus norvegicus clone CH230-31B12, *** SEQUENCI... 44 8.8 1
(CU633758) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(AC026766) Homo sapiens chromosome 3 clone RP11-350M24, WORK... 44 8.8 1
(AL844507) Plasmodium falciparum chromosome 8. 44 8.8 1
(AC223892) Bos taurus clone CH240-455B23, WORKING DRAFT SEQU... 44 8.8 1
(AC219847) Bos taurus clone CH240-320L2, WORKING DRAFT SEQUE... 44 8.8 1
(AC219643) Bos taurus clone CH240-326K18, WORKING DRAFT SEQU... 44 8.8 1
(AC203538) Glycine max clone gmp1-127b9, WORKING DRAFT SEQUE... 44 8.8 1
(AC196600) Myotis lucifugus clone CH235-94H11, WORKING DRAFT... 44 8.8 1
(AC182307) Bos taurus clone CH240-487I3, WORKING DRAFT SEQUE... 44 8.8 1
(AC182172) Bos taurus clone CH240-399D17, WORKING DRAFT SEQU... 44 8.8 1
(AC172452) Bos taurus clone CH240-382L7, WORKING DRAFT SEQUE... 44 8.8 1
(AC171877) Bos taurus clone CH240-279O13, WORKING DRAFT SEQU... 44 8.8 1
(AC171381) Oryctolagus cuniculus clone LB1-197F15, WORKING D... 44 8.8 1
(AC168954) Oryctolagus cuniculus clone LB1-228K6, WORKING DR... 44 8.8 1
(AC025101) Homo sapiens clone RP11-10M20, LOW-PASS SEQUENCE ... 44 8.8 1
(AZ558953) RPCI-23-172H18.TJ RPCI-23 Mus musculus genomic cl... 44 8.8 1
(EK206976) 1095460077918 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.8 1
(DU377607) 1098312106812 CHORI-243 Ovis aries genomic clone ... 44 8.8 1
(DH748724) Rattus norvegicus DNA, BAC clone: RNB1-325P05, 5'... 44 8.8 1
(DH084440) Oryzias latipes Fosmid clone:GOLWFno177_i09, reve... 44 8.8 1
(CR271382) Reverse strand read from insert in 5'HPRT inserti... 44 8.8 1
(CE804233) tigr-gss-dog-17000317824872 Dog Library Canis lup... 44 8.8 1
(AG051232) Pan troglodytes DNA, clone: PTB-031O10.R. 44 8.8 1
(EH636141) EST7249 LK04 Laupala kohalensis cDNA clone 106102... 44 8.8 1
(EH634283) EST5391 LK04 Laupala kohalensis cDNA clone 106102... 44 8.8 1
(DN812813) ACAC-aac46c18.g1 Hydra EST UCI 7 Hydra magnipapil... 44 8.8 1
(DB055602) Homo sapiens cDNA clone TESTI2046946, 5' end, mRN... 44 8.8 1
(DA993947) Homo sapiens cDNA clone SYNOV4006604, 5' end, mRN... 44 8.8 1
(CJ456564) Macaca fascicularis mRNA, clone: QflA-22405, 5' e... 44 8.8 1
(BX105527) RZPD Homo sapiens cDNA clone IMAGp998E134235 = IM... 44 8.8 1
(BQ546943) EST630570 TpMugugaSh01 Theileria parva cDNA clone... 44 8.8 1
(AI079647) oy42a07.s1 Soares_parathyroid_tumor_NbHPA Homo sa... 44 8.8 1
(AA889976) aj95h02.s1 Soares_parathyroid_tumor_NbHPA Homo sa... 44 8.8 1
(BF055048) 7j83b04.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie... 44 8.8 1
(AC213572) Chlorocebus aethiops clone CH252-18G21, WORKING D... 38 9.5 5
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 9.6 7
(AL844506) Plasmodium falciparum chromosome 7. 34 9.8 10
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 32 9.9 4

>(AU039056) Dictyostelium discoideum slug cDNA, clone SSM328.
Length = 539

Score = 658 bits (332), Expect(2) = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus


Query: 151 tgacaatctacgaaccacaatcatcagaagaaacctatacaaaaattagaaatacatcaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tgacaatctacgaaccacaatcatcagaagaaacctatacaaaaattagaaatacatcaa 210


Query: 211 gagttttagttatggttagtgcacaatggtgtattcaatgtcataattttacacattatt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gagttttagttatggttagtgcacaatggtgtattcaatgtcataattttacacattatt 270


Query: 271 atgaaaaagcaagtaataaattaagttcattcttatttttaaaagttgattatgataaat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atgaaaaagcaagtaataaattaagttcattcttatttttaaaagttgattatgataaat 330


Query: 331 gtcctgaaatgtataaagaaaataaaagtgttgaaaaggtaccaacattcattttatata 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtcctgaaatgtataaagaaaataaaagtgttgaaaaggtaccaacattcattttatata 390


Query: 391 ttgatggtattgaaacaaaaagatttgatagttatataaaaaccaacctcgataaaatgg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttgatggtattgaaacaaaaagatttgatagttatataaaaaccaacctcgataaaatgg 450


Query: 451 taaagaattatacagcttagaaataaataaac 482
||||||||||||||||||||||||||||||||
Sbjct: 451 taaagaattatacagcttagaaataaataaac 482

Score = 61.9 bits (31), Expect(2) = 0.0
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 1 gcacattaaatttaagtttattattaaacct 31
|||||||||||||||||||||||||||||||
Sbjct: 1 gcacattaaatttaagtttattattaaacct 31

Score = 61.9 bits (31), Expect = 4e-05
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 541 gcacattaaatttaagtttattattaaacct 571
|||||||||||||||||||||||||||||||
Sbjct: 1 gcacattaaatttaagtttattattaaacct 31

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 839,400,555
Number of extensions: 62334874
Number of successful extensions: 6031789
Number of sequences better than 10.0: 174
Length of query: 863
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 839
Effective length of database: 99,340,224,878
Effective search space: 83346448672642
Effective search space used: 83346448672642
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U01677-1 (Contig-U01677-1Q) /CSM_Contig/Contig-U01677-1Q.Seq.d
(863 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

EF086787_1(EF086787|pid:none) Picea sitchensis clone WS02750_E16... 54 5e-06
EU706448_1(EU706448|pid:none) Triticum aestivum cultivar Soisson... 54 7e-06
AK340367_1(AK340367|pid:none) Acyrthosiphon pisum ACYPI008005 mR... 53 1e-05
EU499301_1(EU499301|pid:none) Litopenaeus vannamei thioredoxin 1... 53 1e-05
AM910994_488(AM910994|pid:none) Plasmodium knowlesi strain H chr... 52 3e-05
DQ443142_1(DQ443142|pid:none) Bombyx mori thioredoxin mRNA, comp... 52 3e-05
(P29446) RecName: Full=Thioredoxin-2; Short=Trx-2; Flag... 51 4e-05
AC024810_17(AC024810|pid:none) Caenorhabditis elegans cosmid Y54... 50 7e-05
EU959440_1(EU959440|pid:none) Zea mays clone 218170 thioredoxin ... 50 1e-04
EU239366_1(EU239366|pid:none) Brassica juncea thioredoxin mRNA, ... 49 2e-04
AF106589_2(AF106589|pid:none) Caenorhabditis elegans cosmid Y44E... 49 2e-04
BT077794_1(BT077794|pid:none) Lepeophtheirus salmonis Pacific fo... 49 2e-04
AF202664_1(AF202664|pid:none) Plasmodium falciparum thioredoxin ... 49 3e-04
AY084415_1(AY084415|pid:none) Arabidopsis thaliana clone 107806 ... 48 4e-04
AK241734_1(AK241734|pid:none) Oryza sativa Japonica Group cDNA, ... 48 4e-04
AY575954_1(AY575954|pid:none) Glycine max thioredoxin mRNA, comp... 48 4e-04
U35826_1(U35826|pid:none) Arabidopsis thaliana thioredoxin h (TR... 48 5e-04
EU144128_1(EU144128|pid:none) Glycine max thioredoxin h2 mRNA, c... 47 6e-04
(Q96419) RecName: Full=Thioredoxin H-type; Short=Trx-H;... 47 6e-04
AY088552_1(AY088552|pid:none) Arabidopsis thaliana clone 7791 mR... 47 6e-04
(Q38879) RecName: Full=Thioredoxin H-type 2; Short=Trx-... 47 6e-04
FM872308_551(FM872308|pid:none) Chlamydia trachomatis JALI20 ser... 47 8e-04
(O84544) RecName: Full=Thioredoxin; Short=Trx; &AE0012... 47 8e-04
CR954217_167(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 47 0.001
AE017263_179(AE017263|pid:none) Mesoplasma florum L1 complete ge... 47 0.001
EU951839_1(EU951839|pid:none) Zea mays clone 1061422 unknown mRNA. 47 0.001
(O97508) RecName: Full=Thioredoxin; Short=Trx; &AB0224... 47 0.001
AY170651_1(AY170651|pid:none) Pisum sativum clone 4 thioredoxin ... 47 0.001
EF172446_1(EF172446|pid:none) Brassica juncea thioredoxin mRNA, ... 46 0.001
CP000590_133(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 46 0.001
CP000922_446(CP000922|pid:none) Anoxybacillus flavithermus WK1, ... 46 0.001
AK340283_1(AK340283|pid:none) Acyrthosiphon pisum ACYPI009665 mR... 46 0.002
BT009704_1(BT009704|pid:none) Arabidopsis thaliana At3g17880 gen... 45 0.002
AK007790_1(AK007790|pid:none) Mus musculus 10 day old male pancr... 45 0.002
AB019230_10(AB019230|pid:none) Arabidopsis thaliana genomic DNA,... 45 0.002
AY891764_1(AY891764|pid:none) Synthetic construct Homo sapiens c... 45 0.003
BC049031_1(BC049031|pid:none) Danio rerio zgc:56493, mRNA (cDNA ... 45 0.003
U42760_1(U42760|pid:none) Naegleria fowleri thioredoxin homolog ... 45 0.003
(P50413) RecName: Full=Thioredoxin; Short=Trx; &Z25864... 45 0.003
AC024827_2(AC024827|pid:none) Caenorhabditis elegans cosmid Y55F... 45 0.003
NRL(3TRX) thioredoxin (reduced) - human &NRL(4TRX) 45 0.004
(P82460) RecName: Full=Thioredoxin; Short=Trx; &AF3828... 45 0.004
AY271308_1(AY271308|pid:none) Citrus x paradisi thioredoxin H mR... 45 0.004
BC084818_1(BC084818|pid:none) Xenopus laevis hypothetical LOC495... 45 0.004
BT081170_1(BT081170|pid:none) Caligus clemensi clone ccle-evs-51... 45 0.004
DQ121443_1(DQ121443|pid:none) Medicago truncatula thioredoxin h2... 45 0.004
EF147512_1(EF147512|pid:none) Populus trichocarpa clone WS0123_A... 45 0.004
AJ319808_1(AJ319808|pid:none) Pisum sativum mRNA for thioredoxin... 45 0.004
EF145486_1(EF145486|pid:none) Populus trichocarpa clone WS01125_... 44 0.005
BT051300_1(BT051300|pid:none) Medicago truncatula clone MTYF1_F2... 44 0.005
AJ937744_1(AJ937744|pid:none) Aspergillus fumigatus mRNA for thi... 44 0.005
AM269955_58(AM269955|pid:none) Aspergillus niger contig An01c008... 44 0.005
AE014296_1058(AE014296|pid:none) Drosophila melanogaster chromos... 44 0.007
CP000085_54(CP000085|pid:none) Burkholderia thailandensis E264 c... 44 0.007
BT052063_1(BT052063|pid:none) Medicago truncatula clone MTYF9_FA... 44 0.007
AF143404_1(AF143404|pid:none) Drosophila melanogaster thioredoxi... 44 0.007
AY376435_1(AY376435|pid:none) Paracoccidioides brasiliensis thio... 44 0.007
(P11232) RecName: Full=Thioredoxin; Short=Trx; &AF3110... 44 0.007
AC151524_17(AC151524|pid:none) Medicago truncatula chromosome 7 ... 44 0.007
AF435818_1(AF435818|pid:none) Nicotiana tabacum thioredoxin h-li... 44 0.009
AY036906_1(AY036906|pid:none) Vitis labrusca Hsp70 interacting p... 44 0.009
EF085642_1(EF085642|pid:none) Picea sitchensis clone WS02919_K03... 44 0.009
AY184797_1(AY184797|pid:none) Chlamydomonas reinhardtii cytosoli... 44 0.009
AC104321_8(AC104321|pid:none) Oryza sativa chromosome 3 BAC OSJN... 44 0.009
AE016820_142(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 43 0.012
AB169251_1(AB169251|pid:none) Macaca fascicularis testis cDNA, c... 43 0.012
AY245455_1(AY245455|pid:none) Hordeum vulgare subsp. vulgare thi... 43 0.012
EF070462_1(EF070462|pid:none) Maconellicoccus hirsutus clone WHM... 43 0.012
BC084527_1(BC084527|pid:none) Xenopus tropicalis hypothetical LO... 43 0.015
EF087550_1(EF087550|pid:none) Picea sitchensis clone WS02817_A23... 43 0.015
EF144427_1(EF144427|pid:none) Populus trichocarpa clone PX0019_G... 43 0.015
AY673828_1(AY673828|pid:none) Schistosoma mansoni thioredoxin 2 ... 43 0.015
CR954205_117(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 42 0.020
AF508130_1(AF508130|pid:none) Plasmodium falciparum 3D7 thioredo... 42 0.020
EF082902_1(EF082902|pid:none) Picea sitchensis clone WS02728_H05... 42 0.020
(Q9PJK3) RecName: Full=Thioredoxin; Short=Trx; &AE0021... 42 0.020
AL445065_210(AL445065|pid:none) Thermoplasma acidophilum complet... 42 0.020
(P08628) RecName: Full=Thioredoxin; Short=Trx; 42 0.020
AY816131_1(AY816131|pid:none) Schistosoma japonicum SJCHGC06363 ... 42 0.026
AF286593_1(AF286593|pid:none) Triticum aestivum cultivar Soisson... 42 0.026
BC050132_1(BC050132|pid:none) Homo sapiens thioredoxin domain co... 42 0.026
AL844508_254(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.026
AF080095_1(AF080095|pid:none) Homo sapiens sperm-specific thiore... 42 0.026
AJ310990_1(AJ310990|pid:none) Pisum sativum mRNA for thioredoxin... 42 0.026
AM270051_9(AM270051|pid:none) Aspergillus niger contig An03c0100... 42 0.026
(Q86VQ3) RecName: Full=Thioredoxin domain-containing protein 2; ... 42 0.026
AY086205_1(AY086205|pid:none) Arabidopsis thaliana clone 22429 m... 42 0.034
FM992695_901(FM992695|pid:none) Candida dubliniensis CD36 chromo... 42 0.034
(Q5R9M3) RecName: Full=Thioredoxin; Short=Trx; &CR8593... 42 0.034
BT073335_1(BT073335|pid:none) Oncorhynchus mykiss clone omyk-evn... 42 0.034
EF083929_1(EF083929|pid:none) Picea sitchensis clone WS0272_C12 ... 42 0.034
CP000113_2191(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 42 0.034
BT056690_1(BT056690|pid:none) Salmo salar clone ssal-eve-542-050... 42 0.034
CR382131_1301(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 42 0.034
AY815296_1(AY815296|pid:none) Schistosoma japonicum SJCHGC03599 ... 42 0.034
L35043_18(L35043|pid:none) Mycoplasma gallisepticum strain A5969... 41 0.045
CP000481_539(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 41 0.045
EU959205_1(EU959205|pid:none) Zea mays clone 212031 thioredoxin ... 41 0.045
A48516_1(A48516|pid:none) Sequence 4 from Patent WO9603505. &AF... 41 0.045
CP000705_1233(CP000705|pid:none) Lactobacillus reuteri DSM 20016... 41 0.045
CU928166_43(CU928166|pid:none) Kluyveromyces thermotolerans stra... 41 0.045
DQ985602_1(DQ985602|pid:none) Bombyx mori clone 017_017005_2005-... 41 0.045
AP000370_9(AP000370|pid:none) Arabidopsis thaliana genomic DNA, ... 41 0.045
AF483265_1(AF483265|pid:none) Populus tremula x Populus tremuloi... 41 0.045
CP001399_1717(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 41 0.059
AE006641_332(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 41 0.059
BT073975_1(BT073975|pid:none) Oncorhynchus mykiss clone omyk-evo... 41 0.059
AE015450_633(AE015450|pid:none) Mycoplasma gallisepticum strain ... 41 0.059
U35829_1(U35829|pid:none) Arabidopsis thaliana thioredoxin h (TR... 41 0.059
EF083995_1(EF083995|pid:none) Picea sitchensis clone WS02713_G05... 41 0.059
AE017243_381(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp... 41 0.059
(Q39241) RecName: Full=Thioredoxin H-type 5; Short=Trx-... 41 0.059
AL606687_5(AL606687|pid:none) Oryza sativa genomic DNA, chromoso... 40 0.077
AY344229_1(AY344229|pid:none) Ipomoea batatas thioredoxin H1 mRN... 40 0.077
AP008210_1557(AP008210|pid:none) Oryza sativa (japonica cultivar... 40 0.077
AC008007_20(AC008007|pid:none) Genomic sequence for Arabidopsis ... 40 0.077
L35043_32(L35043|pid:none) Mycoplasma gallisepticum strain A5969... 40 0.077
CP000440_1968(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 40 0.077
BA000021_304(BA000021|pid:none) Wigglesworthia glossinidia endos... 40 0.10
CR380957_28(CR380957|pid:none) Candida glabrata strain CBS138 ch... 40 0.10
BC129794_1(BC129794|pid:none) Xenopus laevis hypothetical protei... 40 0.10
BT049711_1(BT049711|pid:none) Salmo salar clone ssal-evf-541-161... 40 0.10
BC083924_1(BC083924|pid:none) Rattus norvegicus thioredoxin doma... 40 0.10
CP000084_481(CP000084|pid:none) Candidatus Pelagibacter ubique H... 40 0.10
CP000596_169(CP000596|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.10
EU972241_1(EU972241|pid:none) Zea mays clone 378310 thioredoxin ... 40 0.10
AY072771_1(AY072771|pid:none) Triticum aestivum cultivar Soisson... 40 0.10
CP001601_2424(CP001601|pid:none) Corynebacterium aurimucosum ATC... 40 0.10
FN357365_52(FN357365|pid:none) Schistosoma mansoni genome sequen... 40 0.10
AY245454_1(AY245454|pid:none) Hordeum vulgare subsp. vulgare thi... 40 0.10
BC072884_1(BC072884|pid:none) Xenopus laevis MGC80314 protein, m... 40 0.10
CP000416_1006(CP000416|pid:none) Lactobacillus brevis ATCC 367, ... 40 0.10
AC151824_6(AC151824|pid:none) Medicago truncatula clone mth2-45n... 40 0.13
A96499(A96499) hypothetical protein T10P12.4 [imported] - Arabid... 40 0.13
(Q98TX1) RecName: Full=Thioredoxin; Short=Trx; &AF3217... 40 0.13
FJ384985_1(FJ384985|pid:none) Bombina orientalis thioredoxin mRN... 40 0.13
CP000113_5522(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 40 0.13
BX248360_240(BX248360|pid:none) Corynebacterium diphtheriae grav... 40 0.13
AY128276_1(AY128276|pid:none) Arabidopsis thaliana At1g43560/T10... 40 0.13
BA000016_2355(BA000016|pid:none) Clostridium perfringens str. 13... 40 0.13
(Q07090) RecName: Full=Thioredoxin H-type 2; Short=Trx-... 40 0.13
AC144737_18(AC144737|pid:none) Oryza sativa (japonica cultivar-g... 40 0.13
AC130601_4(AC130601|pid:none) Oryza sativa (japonica cultivar-gr... 40 0.13
AE009948_176(AE009948|pid:none) Streptococcus agalactiae 2603V/R... 40 0.13
AC144502_16(AC144502|pid:none) Medicago truncatula clone mth2-5p... 40 0.13
AY184798_1(AY184798|pid:none) Chlamydomonas reinhardtii thioredo... 40 0.13
BT073907_1(BT073907|pid:none) Oncorhynchus mykiss clone omyk-evo... 39 0.17
AX066165_1(AX066165|pid:none) Sequence 69 from Patent WO0100804.... 39 0.17
EU957285_1(EU957285|pid:none) Zea mays clone 1587938 thioredoxin... 39 0.17
AM238664_927(AM238664|pid:none) Streptomyces ambofaciens ATCC 23... 39 0.17
EU280164_1(EU280164|pid:none) Vitis vinifera thioredoxin h (Trx)... 39 0.17
CP000750_844(CP000750|pid:none) Kineococcus radiotolerans SRS302... 39 0.17
AC010718_13(AC010718|pid:none) Arabidopsis thaliana chromosome 1... 39 0.17
AL929358_8(AL929358|pid:none) Plasmodium falciparum strain 3D7, ... 39 0.17
AM460488_1(AM460488|pid:none) Vitis vinifera contig VV78X042595.... 39 0.17
BT049355_1(BT049355|pid:none) Salmo salar clone ssal-eve-504-203... 39 0.17
BA000036_2976(BA000036|pid:none) Corynebacterium glutamicum ATCC... 39 0.17
CR382128_517(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 39 0.22
BA000035_2804(BA000035|pid:none) Corynebacterium efficiens YS-31... 39 0.22
CP000393_3000(CP000393|pid:none) Trichodesmium erythraeum IMS101... 39 0.22
EU953886_1(EU953886|pid:none) Zea mays clone 1448533 thioredoxin... 39 0.22
BT057724_1(BT057724|pid:none) Salmo salar clone ssal-evf-539-015... 39 0.22
(Q9C9Y6) RecName: Full=Thioredoxin H-type 9; Short=Trx-... 39 0.22
EU970059_1(EU970059|pid:none) Zea mays clone 339213 thioredoxin ... 39 0.22
AC126014_6(AC126014|pid:none) Medicago truncatula clone mth2-18j... 39 0.22
(P47370) RecName: Full=Thioredoxin; Short=Trx; &CP0009... 39 0.22
AY335159_1(AY335159|pid:none) Fagopyrum tataricum thioredoxin mR... 39 0.22
AC007915_21(AC007915|pid:none) Genomic sequence for Arabidopsis ... 39 0.22
AP009256_1349(AP009256|pid:none) Bifidobacterium adolescentis AT... 39 0.29
DQ490238_1(DQ490238|pid:none) Tetrahymena thermophila dynein lig... 39 0.29
AE017282_2020(AE017282|pid:none) Methylococcus capsulatus str. B... 39 0.29
(Q43636) RecName: Full=Thioredoxin H-type; Short=Trx-H;... 39 0.29
(P80028) RecName: Full=Thioredoxin H-type; Short=Trx-H;... 39 0.29
AE017198_1458(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 39 0.29
AE017354_1386(AE017354|pid:none) Legionella pneumophila subsp. p... 39 0.29
AK021926_1(AK021926|pid:none) Homo sapiens cDNA FLJ11864 fis, cl... 39 0.29
FJ041113_1(FJ041113|pid:none) Hevea brasiliensis isolate HaiKen ... 39 0.29
BT056618_1(BT056618|pid:none) Salmo salar clone ssal-evf-553-337... 39 0.29
BT079175_1(BT079175|pid:none) Esox lucius clone eluc-evq-530-028... 39 0.29
AJ844023_1(AJ844023|pid:none) Plantago major mRNA for thioredoxi... 38 0.38
AP009044_2921(AP009044|pid:none) Corynebacterium glutamicum R DN... 38 0.38
AE017262_1616(AE017262|pid:none) Listeria monocytogenes str. 4b ... 38 0.38
BA000002_1481(BA000002|pid:none) Aeropyrum pernix K1 DNA, comple... 38 0.38
BC166957_1(BC166957|pid:none) Xenopus tropicalis hypothetical pr... 38 0.38
DQ227992_1(DQ227992|pid:none) Eucalyptus grandis thioredoxin h m... 38 0.38
AM285319_31(AM285319|pid:none) Spiroplasma citri GII3-3X chromos... 38 0.38
AE017198_492(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 38 0.38
FN392322_288(FN392322|pid:none) Pichia pastoris GS115 chromosome... 38 0.38
E72453(E72453)hypothetical protein APE2273 - Aeropyrum pernix (s... 38 0.38
CR954205_227(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 38 0.50
AY838902_1(AY838902|pid:none) Antrodia camphorata thioredoxin mR... 38 0.50
DQ213437_1(DQ213437|pid:none) Taeniopygia guttata clone 0065P001... 38 0.50
(Q9Z7P5) RecName: Full=Thioredoxin; Short=Trx; &AE0013... 38 0.50
CP000412_1278(CP000412|pid:none) Lactobacillus delbrueckii subsp... 38 0.50
BC166975_1(BC166975|pid:none) Xenopus tropicalis hypothetical pr... 37 0.65
EF585960_1(EF585960|pid:none) Sonneratia caseolaris isolate Sonn... 37 0.65
AK063980_1(AK063980|pid:none) Oryza sativa Japonica Group cDNA c... 37 0.65
CU466930_780(CU466930|pid:none) Candidatus Cloacamonas acidamino... 37 0.65
AP008207_3754(AP008207|pid:none) Oryza sativa (japonica cultivar... 37 0.65
AP007154_97(AP007154|pid:none) Aspergillus oryzae RIB40 genomic ... 37 0.65
AP003263_29(AP003263|pid:none) Oryza sativa Japonica Group genom... 37 0.65
BT075547_1(BT075547|pid:none) Osmerus mordax clone omor-eva-004-... 37 0.65
FN357896_1(FN357896|pid:none) Schistosoma mansoni genome sequenc... 37 0.85
CP000474_2915(CP000474|pid:none) Arthrobacter aurescens TC1, com... 37 0.85
DQ213438_1(DQ213438|pid:none) Taeniopygia guttata clone 0058P005... 37 0.85
AL939107_29(AL939107|pid:none) Streptomyces coelicolor A3(2) com... 37 0.85
CP000851_404(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 37 0.85
EF585961_1(EF585961|pid:none) Sonneratia ovata isolate Sonnbu_75... 37 0.85
CP000713_2211(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 37 0.85
CP001628_2020(CP001628|pid:none) Micrococcus luteus NCTC 2665, c... 37 0.85
FN357896_2(FN357896|pid:none) Schistosoma mansoni genome sequenc... 37 0.85
CP000113_6679(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 37 0.85
CP001329_88(CP001329|pid:none) Micromonas sp. RCC299 chromosome ... 37 0.85
CR931997_2056(CR931997|pid:none) Corynebacterium jeikeium K411 c... 37 0.85
BT056501_1(BT056501|pid:none) Salmo salar clone ssal-evd-523-034... 37 1.1
AF438359_1(AF438359|pid:none) Triticum aestivum thioredoxin mRNA... 37 1.1
S77780(S77780;S46921) thioredoxin - Mycoplasma capricolum (fragm... 36 1.4
BT057388_1(BT057388|pid:none) Salmo salar clone ssal-evd-551-253... 36 1.4
CP000088_170(CP000088|pid:none) Thermobifida fusca YX, complete ... 36 1.4
(Q9JLZ1) RecName: Full=Glutaredoxin-3; AltName: Full=Thioredoxin... 36 1.4
AF435816_1(AF435816|pid:none) Zea mays thioredoxin h-like protei... 36 1.4
AP009484_1423(AP009484|pid:none) Macrococcus caseolyticus JCSC54... 36 1.4
AE014133_1783(AE014133|pid:none) Streptococcus mutans UA159, com... 36 1.4
EU957319_1(EU957319|pid:none) Zea mays clone 1588464 thioredoxin... 36 1.4
CP000777_2179(CP000777|pid:none) Leptospira biflexa serovar Pato... 36 1.4
BT080474_1(BT080474|pid:none) Caligus clemensi clone ccle-evs-51... 36 1.4
EU956315_1(EU956315|pid:none) Zea mays clone 1560680 thioredoxin... 36 1.4
AM989985_13(AM989985|pid:none) Zygosaccharomyces rouxii strain C... 36 1.4
BC087486_1(BC087486|pid:none) Xenopus laevis hypothetical LOC496... 36 1.4
CP000682_1592(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 36 1.4
AB005246_6(AB005246|pid:none) Arabidopsis thaliana genomic DNA, ... 36 1.9
CR954246_248(CR954246|pid:none) Pseudoalteromonas haloplanktis s... 36 1.9
AY087725_1(AY087725|pid:none) Arabidopsis thaliana clone 3797 mR... 36 1.9
AE010299_3129(AE010299|pid:none) Methanosarcina acetivorans str.... 36 1.9
CU928165_298(CU928165|pid:none) Kluyveromyces thermotolerans str... 36 1.9
EU958748_1(EU958748|pid:none) Zea mays clone 207751 thioredoxin ... 36 1.9
CR380951_15(CR380951|pid:none) Candida glabrata strain CBS138 ch... 36 1.9
AE008384_436(AE008384|pid:none) Methanosarcina mazei strain Goe1... 36 1.9
CP000606_341(CP000606|pid:none) Shewanella loihica PV-4, complet... 36 1.9
CP001341_2732(CP001341|pid:none) Arthrobacter chlorophenolicus A... 36 1.9
CP000454_3046(CP000454|pid:none) Arthrobacter sp. FB24, complete... 36 1.9
CP000362_1404(CP000362|pid:none) Roseobacter denitrificans OCh 1... 36 1.9
EF585959_1(EF585959|pid:none) Sonneratia alba isolate Sonnbu_75_... 36 1.9
CP000927_4572(CP000927|pid:none) Caulobacter sp. K31, complete g... 36 1.9
CP000896_783(CP000896|pid:none) Acholeplasma laidlawii PG-8A, co... 36 1.9
CP001022_327(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 36 1.9
BT036432_1(BT036432|pid:none) Zea mays full-length cDNA clone ZM... 36 1.9
AB061204_1(AB061204|pid:none) Cucurbita maxima mRNA for thioredo... 35 2.5
CP001131_3566(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 35 2.5
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'... 35 2.5
CP000673_2331(CP000673|pid:none) Clostridium kluyveri DSM 555, c... 35 2.5
AP009049_2100(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 35 2.5
CP000033_405(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 35 2.5
CP000633_3114(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 35 2.5
(Q2KIL5) RecName: Full=Protein disulfide-isomerase A5; ... 35 3.2
AL844503_189(AL844503|pid:none) Plasmodium falciparum 3D7 chromo... 35 3.2
AF435815_1(AF435815|pid:none) Hordeum vulgare thioredoxin h-like... 35 3.2
AY204511_1(AY204511|pid:none) Leymus chinensis thioredoxin h gen... 35 3.2
AM180088_1576(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 35 3.2
EF085715_1(EF085715|pid:none) Picea sitchensis clone WS0292_C05 ... 35 3.2
S49352(S49352)protein S1 - Phalaris coerulescens 35 3.2
AM436359_2(AM436359|pid:none) Vitis vinifera contig VV78X063867.... 35 3.2
AK101264_1(AK101264|pid:none) Oryza sativa Japonica Group cDNA c... 35 3.2
AP007281_525(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D... 35 3.2
CP000077_187(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 35 3.2
AY688958_1(AY688958|pid:none) Trypanosoma cruzi strain Tulahuen ... 35 3.2
(P29450) RecName: Full=Thioredoxin F-type, chloroplastic; ... 35 3.2
CP001618_366(CP001618|pid:none) Beutenbergia cavernae DSM 12333,... 35 3.2
S49353(S49353;S49350)protein S2 - Phalaris coerulescens 35 3.2
AF159388_1(AF159388|pid:none) Phalaris coerulescens thioredoxin-... 35 3.2
CP001013_4083(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 35 3.2
(Q8TFM8) RecName: Full=Thioredoxin-like protein; AltName: Allerg... 35 3.2
CP000503_507(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 35 3.2
CR940352_387(CR940352|pid:none) Theileria annulata strain Ankara... 35 3.2
CP000681_3404(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 35 3.2
AY596502_1(AY596502|pid:none) Helicosporidium sp. ex Simulium jo... 35 3.2
BT015349_1(BT015349|pid:none) Arabidopsis thaliana At3g16110 gen... 35 4.2
CP000507_3202(CP000507|pid:none) Shewanella amazonensis SB2B, co... 35 4.2
CP000087_2(CP000087|pid:none) Rickettsia bellii RML369-C, comple... 35 4.2
FN318922_1(FN318922|pid:none) Schistosoma japonicum isolate Anhu... 35 4.2
AP009179_1299(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 35 4.2
AE017282_2478(AE017282|pid:none) Methylococcus capsulatus str. B... 35 4.2
(Q14554) RecName: Full=Protein disulfide-isomerase A5; ... 35 4.2
AM263198_2169(AM263198|pid:none) Listeria welshimeri serovar 6b ... 35 4.2
AE017354_2873(AE017354|pid:none) Legionella pneumophila subsp. p... 35 4.2
CP000250_447(CP000250|pid:none) Rhodopseudomonas palustris HaA2,... 35 4.2
AM180355_2212(AM180355|pid:none) Clostridium difficile 630 compl... 35 4.2
(O17486) RecName: Full=Thioredoxin; Short=Trx; &AF0346... 35 4.2
CP000471_3193(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 35 4.2
AB201253_1(AB201253|pid:none) Babesia caballi PDI ene for protei... 35 4.2
AP006841_3171(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 35 4.2
CP000583_190(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 35 4.2
CP000251_3496(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 34 5.5
CP001359_3631(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 34 5.5
CP000529_1320(CP000529|pid:none) Polaromonas naphthalenivorans C... 34 5.5
BX293980_71(BX293980|pid:none) Mycoplasma mycoides subsp. mycoid... 34 5.5
AF159385_1(AF159385|pid:none) Hordeum bulbosum thioredoxin-like ... 34 5.5
CP000284_1824(CP000284|pid:none) Methylobacillus flagellatus KT,... 34 5.5
CP001096_375(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 34 5.5
AM942444_1974(AM942444|pid:none) Corynebacterium urealyticum DSM... 34 5.5
AY389723_1(AY389723|pid:none) Hyacinthus orientalis thioredoxin ... 34 5.5
AM295250_1340(AM295250|pid:none) Staphylococcus carnosus subsp. ... 34 5.5
BC076929_1(BC076929|pid:none) Xenopus tropicalis thioredoxin-lik... 34 5.5
AM746676_2340(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 34 7.2
CP001620_1971(CP001620|pid:none) Corynebacterium kroppenstedtii ... 34 7.2
AE014134_2419(AE014134|pid:none) Drosophila melanogaster chromos... 34 7.2
CP000505_1415(CP000505|pid:none) Thermofilum pendens Hrk 5, comp... 34 7.2
CP001213_565(CP001213|pid:none) Bifidobacterium animalis subsp. ... 34 7.2
AM711867_812(AM711867|pid:none) Clavibacter michiganensis subsp.... 34 7.2
CP000469_410(CP000469|pid:none) Shewanella sp. ANA-3, complete g... 34 7.2
AE014299_405(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 34 7.2
CP000510_2480(CP000510|pid:none) Psychromonas ingrahamii 37, com... 34 7.2
BT057086_1(BT057086|pid:none) Salmo salar clone ssal-evd-554-027... 34 7.2
AF159386_1(AF159386|pid:none) Secale cereale thioredoxin-like pr... 33 9.4
(O64432) RecName: Full=Thioredoxin H-type; Short=Trx-H;... 33 9.4
CP001056_2460(CP001056|pid:none) Clostridium botulinum B str. Ek... 33 9.4
BC089153_1(BC089153|pid:none) Xenopus laevis hypothetical protei... 33 9.4
CP000117_3742(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 33 9.4
EU959293_1(EU959293|pid:none) Zea mays clone 214479 thioredoxin ... 33 9.4
AP008981_31(AP008981|pid:none) Orientia tsutsugamushi str. Ikeda... 33 9.4
BC077392_1(BC077392|pid:none) Xenopus laevis MGC81675 protein, m... 33 9.4
CP000951_1177(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 33 9.4
CP001175_384(CP001175|pid:none) Listeria monocytogenes HCC23, co... 33 9.4
CP001071_838(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 33 9.4
AE014298_1745(AE014298|pid:none) Drosophila melanogaster chromos... 33 9.4
CP000079_115(CP000079|pid:none) Leishmania major strain Friedlin... 33 9.4
AP009178_176(AP009178|pid:none) Nitratiruptor sp. SB155-2 genomi... 33 9.4
EU954106_1(EU954106|pid:none) Zea mays clone 1455829 thioredoxin... 33 9.4
AM494964_123(AM494964|pid:none) Leishmania braziliensis chromoso... 33 9.4

>EF086787_1(EF086787|pid:none) Picea sitchensis clone WS02750_E16
unknown mRNA.
Length = 145

Score = 54.3 bits (129), Expect = 5e-06
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Frame = +3

Query: 171 SSEETYTKIR--NTSRVLVMV--SAQWCIQCHNFTHYYEKASNKLSSFLFLKVDYDKCPE 338
+S+E KI NT+ +V+V SA WC C+ +Y + S K +FLKVD D+ E
Sbjct: 36 TSQEWEAKISEANTTGKIVVVDFSATWCGPCNMIAPFYTELSQKHPQLVFLKVDVDELRE 95

Query: 339 MYKENKSVEKVPTFILYIDGIETKRFDSYIKTNLDKMVKNY 461
+ E +V+ +PTF+ +G + K+ L+K VK+Y
Sbjct: 96 L-SETWNVQAMPTFVFIKNGKQIDTLVGADKSELEKKVKSY 135

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 755,251,405
Number of extensions: 10688847
Number of successful extensions: 52500
Number of sequences better than 10.0: 329
Number of HSP's gapped: 52037
Number of HSP's successfully gapped: 329
Length of query: 287
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 160
Effective length of database: 640,137,871
Effective search space: 102422059360
Effective search space used: 102422059360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.59 gvh: 0.26 alm: 0.69 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 1.37 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U01677-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 5
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0