Contig-U10437-1 |
Contig ID |
Contig-U10437-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
372 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
2857453 |
End point |
2857091 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U10437 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.20 |
Homology vs DNA |
Query= Contig-U10437-1 (Contig-U10437-1Q) /CSM_Contig/Contig-U10437-1Q.Seq.d (372 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ432802) Dictyostelium discoideum cDNA clone:ddv19j21, 3' ... 402 e-123 2 (AJ786025) Dictyostelium discoideum mRNA for VASP protein. 387 e-117 2 (BJ346269) Dictyostelium discoideum cDNA clone:dda30l10, 3' ... 387 e-112 2 (AU284496) Dictyostelium discoideum gamete cDNA clone:FC-AZ1... 387 e-103 1 (AU052782) Dictyostelium discoideum slug cDNA, clone SLK677. 387 e-103 1 (AU052498) Dictyostelium discoideum slug cDNA, clone SLD425. 387 e-103 1 (AU039275) Dictyostelium discoideum slug cDNA, clone SLH329. 387 e-103 1 (AU038176) Dictyostelium discoideum slug cDNA, clone SSH374. 387 e-103 1 (AU034182) Dictyostelium discoideum slug cDNA, clone SLC230. 387 e-103 1 (C91254) Dictyostelium discoideum slug cDNA, clone SSJ504. 387 e-103 1 (C90679) Dictyostelium discoideum slug cDNA, clone SSJ612. 387 e-103 1 (BJ345082) Dictyostelium discoideum cDNA clone:dda21e16, 3' ... 387 e-103 1 (BJ343894) Dictyostelium discoideum cDNA clone:dda17d18, 3' ... 387 e-103 1 (BJ342274) Dictyostelium discoideum cDNA clone:dda13a08, 3' ... 387 e-103 1 (BJ347376) Dictyostelium discoideum cDNA clone:dda26m22, 3' ... 276 e-102 3 (C22970) Dictyostelium discoideum gamete cDNA, clone FC-AL12. 381 e-101 1 (AU053524) Dictyostelium discoideum slug cDNA, clone SLI838. 357 1e-96 2 (AU053815) Dictyostelium discoideum slug cDNA, clone SLJ738. 357 1e-96 2 (BJ398372) Dictyostelium discoideum cDNA clone:dds12o02, 3' ... 355 7e-94 1 (AU284573) Dictyostelium discoideum gamete cDNA clone:FC-BD1... 323 8e-92 2 (AU052572) Dictyostelium discoideum slug cDNA, clone SLD538. 254 2e-63 1 (BJ440251) Dictyostelium discoideum cDNA clone:ddv43i04, 3' ... 157 3e-34 1 (BJ421568) Dictyostelium discoideum cDNA clone:ddv43i04, 5' ... 157 3e-34 1 (BJ345309) Dictyostelium discoideum cDNA clone:dda23e10, 3' ... 100 8e-33 3 (BJ326671) Dictyostelium discoideum cDNA clone:dda17d18, 5' ... 74 4e-09 1 (EA394875) Sequence 43699 from patent US 7314974. 46 0.87 1 (AC114514) Rattus norvegicus clone CH230-63A18, WORKING DRAF... 46 0.87 1 (AC106111) Rattus norvegicus clone CH230-140K16, *** SEQUENC... 46 0.87 1 (BP610534) Arabidopsis thaliana cDNA clone:RAFL16-11-N13, 3'... 46 0.87 1 (BP581202) Arabidopsis thaliana cDNA clone:RAFL14-30-O05, 3'... 46 0.87 1 (EY665201) CS00-C1-101-083-B10-CT.F Sweet orange leaf, infec... 46 0.87 1 (CP001037) Nostoc punctiforme PCC 73102, complete genome. 46 0.87 1 (AL772305) Mouse DNA sequence from clone RP23-86E8 on chromo... 32 1.7 2 (AZ751945) RPCI-24-128O1.TV RPCI-24 Mus musculus genomic clo... 32 2.4 2 (AY263397) Arabidopsis thaliana Nramp6b mRNA, complete cds; ... 44 3.4 1 (AY074865) Arabidopsis thaliana At1g15960/T24D18_6 mRNA, com... 44 3.4 1 (AJ291831) Arabidopsis thaliana mRNA for putative metal tran... 44 3.4 1 (AC010924) Arabidopsis thaliana chromosome 1 BAC T24D18 sequ... 44 3.4 1 (AC162846) Bos taurus clone CH240-121N14, WORKING DRAFT SEQU... 44 3.4 1 (AC151498) Dasypus novemcinctus clone VMRC5-119C6, WORKING D... 44 3.4 1 (AC151400) Dasypus novemcinctus clone VMRC5-220D23, WORKING ... 44 3.4 1 (AC095950) Rattus norvegicus clone CH230-11A19, *** SEQUENCI... 44 3.4 1 (AC095799) Rattus norvegicus clone CH230-9G3, *** SEQUENCING... 44 3.4 1 (AC173087) Bos taurus clone CH240-278H7, WORKING DRAFT SEQUE... 44 3.4 1 (ER527303) 1093015706481 Global-Ocean-Sampling_GS-35-01-01-1... 44 3.4 1 (AL090589) Arabidopsis thaliana genome survey sequence T7 en... 44 3.4 1 (B62436) T21L20TR TAMU Arabidopsis thaliana genomic clone T2... 44 3.4 1 (DN625587) UCRCA01_06K11_r Bark of Madame Vinous Sweet Orang... 44 3.4 1 (DN625586) UCRCA01_06K11_f Bark of Madame Vinous Sweet Orang... 44 3.4 1 (DB947719) Manihot esculenta mRNA, clone: CAS01_028_O05, 3'end. 44 3.4 1 (EY811125) PT11-C1-900-015-A12-CT.F Poncirus trifoliata leaf... 44 3.4 1 (AC147533) Macropus eugenii clone ME_KBa-311C4, complete seq... 42 3.5 3 (AY248861) Plasmodium falciparum DBLd14 erythrocyte membrane... 38 3.7 2 (BJ722687) Oryzias latipes cDNA clone:MF01FFA026p15, 3' end. 36 3.8 2 (ER564698) 1093015763209 Global-Ocean-Sampling_GS-36-01-01-2... 32 8.5 2
>(BJ432802) Dictyostelium discoideum cDNA clone:ddv19j21, 3' end, single read. Length = 363
Score = 402 bits (203), Expect(2) = e-123 Identities = 206/206 (100%) Strand = Plus / Minus
Query: 167 tcatcaacatctttcaaaccaccacaatcattcagtaaaccagcaactaagacagctgct 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 tcatcaacatctttcaaaccaccacaatcattcagtaaaccagcaactaagacagctgct 148
Query: 227 gcaaacaaaccaccttcaccatccttatcagctccactcccatcaactgtagccaatgaa 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 gcaaacaaaccaccttcaccatccttatcagctccactcccatcaactgtagccaatgaa 88
Query: 287 gatttacaatcacccaaagaagaaattttaactgaagttagaaaggaaattcaaaaagct 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 gatttacaatcacccaaagaagaaattttaactgaagttagaaaggaaattcaaaaagct 28
Query: 347 aaagatgaaattttanaagcaatcag 372 |||||||||||||||||||||||||| Sbjct: 27 aaagatgaaattttanaagcaatcag 2
Score = 73.8 bits (37), Expect(2) = e-123 Identities = 37/37 (100%) Strand = Plus / Minus
Query: 56 gttatcgctaaaccagttgcaccacaagcaccagtcg 92 ||||||||||||||||||||||||||||||||||||| Sbjct: 318 gttatcgctaaaccagttgcaccacaagcaccagtcg 282
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 285,087,149 Number of extensions: 17185594 Number of successful extensions: 1389404 Number of sequences better than 10.0: 55 Length of query: 372 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 349 Effective length of database: 93,106,754,628 Effective search space: 32494257365172 Effective search space used: 32494257365172 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 6.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |