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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10406-1
Contig ID Contig-U10406-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10406-1 (Contig-U10406-1Q) /CSM_Contig/Contig-U10406-1Q.Seq.d
NNNNNNNNNNATAAGTAAAAGAGTTATTGGTCCAAGATTAGATGATGACA
ATAATAATAATGATAATGATAAATTTAATAATAATAATAAAAAAGCAATT
GGCCCATCTAGAATTGGACCAACAATTGGTCCATCAATTGGACCATCAAG
ATATAATACAAATAATAATGATAGTAATCATAATAGTAATAATGATGATG
ATGATGATAGTAGTGAAGAAGATGAAGAAGATACAAAATCAGAATGGGAG
AGAGTAAGAAATATGATTGAAAATAATAAAAATGGTGATACTGATAGTAC
AAATAAAACAACAAAAAGAGAGGAATGGATGACAATGATGCCAACTGGTA
GAATTGATTCAATGTCAAATAGACAATTCAGTCAAAAAGGTAATGTTGGT
TCAATATCAACAACAACAACAACAACAACAGGAGGAACTACTCCTGTTGA
AGGTTCTAAACAATTATTTGAAAAATTAAGACAACAAGAAACTGAAGAAA
AAATGAAGCAATATAATGATAAAAACAGATCCTCTTCCTTGTTATCAATG
CACCAAAAAAAGCAATCCTCATCATCATCATCATCATCCAATAGTAATAA
AAAAGATTACACATTCAATAGAGATGAAGAATTACAAATAAGTAAAGTTG
ATAAAGAACAT
Gap no gap
Contig length 661
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1621526
End point 1620875
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U10406
List of clone(s) 

est1=VFH826Z,1,652
Translated Amino Acid sequence 
XXXISKRVIGPRLDDDNNNNDNDKFNNNNKKAIGPSRIGPTIGPSIGPSRYNTNNNDSNH
NSNNDDDDDSSEEDEEDTKSEWERVRNMIENNKNGDTDSTNKTTKREEWMTMMPTGRIDS
MSNRQFSQKGNVGSISTTTTTTTGGTTPVEGSKQLFEKLRQQETEEKMKQYNDKNRSSSL
LSMHQKKQSSSSSSSSNSNKKDYTFNRDEELQISKVDKEH
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxk*ksywskir**q*******i*****ksnwpi*nwtnnwsinwtiki*yk*****s
************rr*rrykirmgeskkyd*k**kw*y**yk*nnkkrgmddndanw*n*f
nvk*tiqskr*cwfninnnnnnnrrnysc*rf*tii*kikttrn*rkneai***kqilfl
vinapkkailiiiiiiq***krlhiq*r*ritnk*s**rt


Frame B:
XXXISKRVIGPRLDDDNNNNDNDKFNNNNKKAIGPSRIGPTIGPSIGPSRYNTNNNDSNH
NSNNDDDDDSSEEDEEDTKSEWERVRNMIENNKNGDTDSTNKTTKREEWMTMMPTGRIDS
MSNRQFSQKGNVGSISTTTTTTTGGTTPVEGSKQLFEKLRQQETEEKMKQYNDKNRSSSL
LSMHQKKQSSSSSSSSNSNKKDYTFNRDEELQISKVDKEH


Frame C:
xxx*vkellvqd*mmtiiimiminliiiikkqlahleldqqlvhqldhqdiiqiimivii
ivimmmmmivvkkmkkiqnqngre*ei*lkiikmvilivqikqqkerng*q*cqlveliq
cqidnsvkkvmlvqyqqqqqqqqeellllkvlnnylkn*dnkklkkk*snimiktdplpc
yqctkksnphhhhhhpivikkithsiemknyk*vklikn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10406-1 (Contig-U10406-1Q)
/CSM_Contig/Contig-U10406-1Q.Seq.d
         (661 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10406-1 (Contig-U10406-1Q) /CSM_Contig/Conti...   379  e-105
Contig-U06101-1 (Contig-U06101-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13560-1 (Contig-U13560-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U11228-1 (Contig-U11228-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U11005-1 (Contig-U11005-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U09130-1 (Contig-U09130-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U14182-1 (Contig-U14182-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U13233-1 (Contig-U13233-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U13019-1 (Contig-U13019-1Q) /CSM_Contig/Conti...    34  0.18

>Contig-U10406-1 (Contig-U10406-1Q) /CSM_Contig/Contig-U10406-1Q.Seq.d
          Length = 661

 Score =  379 bits (191), Expect = e-105
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 217 agaagatgaagaagatacaaaatcagaatgggagagagtaagaaatatgattgaaaataa 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 agaagatgaagaagatacaaaatcagaatgggagagagtaagaaatatgattgaaaataa 276

                                                                       
Query: 277 taaaaatggtgatactgatagtacaaataaaacaacaaaaagagaggaatggatgacaat 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taaaaatggtgatactgatagtacaaataaaacaacaaaaagagaggaatggatgacaat 336

                                                                       
Query: 337 gatgccaactggtagaattgattcaatgtcaaatagacaattcagtcaaaaaggtaatgt 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gatgccaactggtagaattgattcaatgtcaaatagacaattcagtcaaaaaggtaatgt 396

                      
Query: 397 tggttcaatat 407
           |||||||||||
Sbjct: 397 tggttcaatat 407


 Score =  246 bits (124), Expect = 3e-65
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 431 ggaggaactactcctgttgaaggttctaaacaattatttgaaaaattaagacaacaagaa 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggaggaactactcctgttgaaggttctaaacaattatttgaaaaattaagacaacaagaa 490

                                                                       
Query: 491 actgaagaaaaaatgaagcaatataatgataaaaacagatcctcttccttgttatcaatg 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actgaagaaaaaatgaagcaatataatgataaaaacagatcctcttccttgttatcaatg 550

               
Query: 551 cacc 554
           ||||
Sbjct: 551 cacc 554


 Score =  145 bits (73), Expect = 7e-35
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                       
Query: 589 caatagtaataaaaaagattacacattcaatagagatgaagaattacaaataagtaaagt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 caatagtaataaaaaagattacacattcaatagagatgaagaattacaaataagtaaagt 648

                        
Query: 649 tgataaagaacat 661
           |||||||||||||
Sbjct: 649 tgataaagaacat 661


 Score =  139 bits (70), Expect = 4e-33
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                       
Query: 91  aaaagcaattggcccatctagaattggaccaacaattggtccatcaattggaccatcaag 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  aaaagcaattggcccatctagaattggaccaacaattggtccatcaattggaccatcaag 150

                     
Query: 151 atataataca 160
           ||||||||||
Sbjct: 151 atataataca 160


 Score = 75.8 bits (38), Expect = 5e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 11 ataagtaaaagagttattggtccaagattagatgatga 48
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ataagtaaaagagttattggtccaagattagatgatga 48


>Contig-U06101-1 (Contig-U06101-1Q) /CSM_Contig/Contig-U06101-1Q.Seq.d
          Length = 1113

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 459 aacaattatttgaaaaatta 478
           ||||||||||||||||||||
Sbjct: 551 aacaattatttgaaaaatta 570


>Contig-U13560-1 (Contig-U13560-1Q) /CSM_Contig/Contig-U13560-1Q.Seq.d
          Length = 515

 Score = 36.2 bits (18), Expect = 0.046
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 463 attatttgaaaaattaag 480
           ||||||||||||||||||
Sbjct: 379 attatttgaaaaattaag 362


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,287
Number of Sequences: 6905
Number of extensions: 11287
Number of successful extensions: 1703
Number of sequences better than 10.0: 191
length of query: 661
length of database: 5,674,871
effective HSP length: 16
effective length of query: 645
effective length of database: 5,564,391
effective search space: 3589032195
effective search space used: 3589032195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.20
Homology vs DNA 
Query= Contig-U10406-1 (Contig-U10406-1Q) /CSM_Contig/Contig-U10406-1Q.Seq.d
         (661 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434234) Dictyostelium discoideum cDNA clone:ddv16d08, 3' ...   361   0.0    5
(CT381017) Sus scrofa genomic clone CH242-69P6, genomic surv...    48   0.062  2
(CG753803) P049-1-B04.za Ppa EcoRI BAC Library Pristionchus ...    42   0.17   3
(AL448179) Paramecium tetraurelia sequence M23F11r of the en...    46   0.19   2
(CU915430) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.23   2
(CU571109) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.23   2
(CU606905) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.40   1
(CT112207) Sus scrofa genomic clone PigE-87P16, genomic surv...    48   0.40   1
(FE760587) CAYF7660.g3 CAYF Petrolisthes cinctipes heart, wh...    42   0.41   2
(FE760586) CAYF7660.b3 CAYF Petrolisthes cinctipes heart, wh...    42   0.41   2
(FE760298) CAYF7476.g3 CAYF Petrolisthes cinctipes heart, wh...    42   0.41   2
(FE760297) CAYF7476.b3 CAYF Petrolisthes cinctipes heart, wh...    42   0.41   2
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN...    36   0.61   2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.69   9
(AC183464) Callicebus moloch clone LB5-347J10, WORKING DRAFT...    34   0.85   2
(AP005833) Oryza sativa Japonica Group genomic DNA, chromoso...    36   0.85   2
(AC105289) Homo sapiens BAC clone RP11-629A7 from 4, complet...    36   0.88   2
(EA701116) Sequence 79995 from patent US 7365185.                  36   1.1    2
(EA672453) Sequence 51332 from patent US 7365185.                  36   1.1    2
(AC087073) Homo sapiens BAC clone RP11-752H12 from 2, comple...    32   1.4    7
(AL845340) Mouse DNA sequence from clone RP23-169D3 on chrom...    46   1.6    1
(AM451406) Vitis vinifera contig VV78X169805.8, whole genome...    46   1.6    1
(DU912804) 329367 Tomato EcoRI BAC Library Solanum lycopersi...    46   1.6    1
(DE847812) Macropus eugenii DNA, BAC clone: MEB1-009N14_F, 5...    46   1.6    1
(CT859680) Oryza sativa Indica Group EST sequence:OSIGCPI225...    46   1.6    1
(AC119354) Rattus norvegicus clone CH230-414J4, WORKING DRAF...    42   1.7    5
(BX897712) Zebrafish DNA sequence from clone CH211-146A9 in ...    40   1.8    5
(BU498208) PfESToab94c01.y1 Plasmodium falciparum 3D7 asexua...    30   1.9    3
(DB758125) Apis mellifera head cDNA, RIKEN full-length enric...    36   2.2    2
(CU466430) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.2    3
(DB755180) Apis mellifera head cDNA, RIKEN full-length enric...    36   2.2    2
(AZ556794) RPCI-23-212O15.TJ RPCI-23 Mus musculus genomic cl...    40   2.5    2
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    32   2.5    2
(AE004969) Neisseria gonorrhoeae FA 1090, complete genome.         32   2.6    2
(EJ972956) 1093022095647 Global-Ocean-Sampling_GS-30-02-01-1...    38   3.1    2
(ER530090) 1093015742421 Global-Ocean-Sampling_GS-35-01-01-1...    38   3.1    2
(EK347703) 1095467575794 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.3    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    42   3.4    8
(EJ977362) 1093022129247 Global-Ocean-Sampling_GS-30-02-01-1...    38   3.4    2
(EJ457410) 1093017917513 Global-Ocean-Sampling_GS-28-01-01-1...    38   3.4    2
(ER319324) 1092344166080 Global-Ocean-Sampling_GS-34-01-01-1...    36   3.6    2
(DJ386576) Diagnosis of Diseases Associated with Metastasis.       34   3.7    2
(AX348586) Sequence 44 from Patent WO0202807.                      34   3.7    2
(AX345269) Sequence 340 from Patent WO0200928.                     34   3.7    2
(AX281372) Sequence 36 from Patent WO0177376.                      34   3.7    2
(BG295629) 602393023F1 NIH_MGC_94 Mus musculus cDNA clone IM...    38   3.8    2
(DD107704) GONOCOCCAL PROTEINS AND NUCLEIC ACIDS.                  32   4.0    2
(CS549833) Sequence 345 from Patent EP1777233.                     32   4.0    2
(DJ080803) Neisseria Genomic Research.                             32   4.0    2
(DJ076765) Neisseria Meningitidis Antigens and Compositions.       32   4.0    2
(DJ075813) Neisseria Meningitidis Antigens and Compositions.       32   4.0    2
(DD002088) Neisseria Genomic Sequences And Methods Of Their ...    32   4.0    2
(CS290771) Sequence 2181 from Patent WO2000071725.                 32   4.0    2
(CS238388) Sequence 70 from Patent EP1605061.                      32   4.0    2
(AX043991) Sequence 70 from Patent WO0066791.                      32   4.0    2
(AF235147) Neisseria gonorrhoeae strain FA1090 GNA2132 (gna2...    32   4.0    2
(AF235146) Neisseria gonorrhoeae strain NG-F62 GNA2132 (gna2...    32   4.0    2
(CZ533930) SRAA-aac88c04.b1 Strongyloides ratti whole genome...    34   4.1    2
(AL591590) Human DNA sequence from clone CTD-2053G21 on chro...    32   4.9    3
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    40   5.5    9
(AP009915) Lotus japonicus genomic DNA, clone: LjT07K13, TM2...    42   5.8    3
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    34   5.9    5
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    36   5.9    7
(AL159151) Human DNA sequence from clone RP11-156O2 on chrom...    36   6.0    4
(AC221191) Bos taurus clone CH240-397L9, WORKING DRAFT SEQUE...    40   6.1    2
(CT737307) CH251-89L9, complete sequence.                          44   6.3    1
(AC191699) Pan troglodytes BAC clone CH251-638K10 from chrom...    44   6.3    1
(AC187466) Medicago truncatula chromosome 2 BAC clone mth2-6...    44   6.3    1
(AC113223) Homo sapiens X BAC RP13-597O16 (Roswell Park Canc...    44   6.3    1
(AC112495) Homo sapiens X BAC RP11-149B9 (Roswell Park Cance...    44   6.3    1
(AC153261) Bos taurus clone CH240-22J18, WORKING DRAFT SEQUE...    44   6.3    1
(AC152663) Bos taurus clone CH240-9G23, WORKING DRAFT SEQUEN...    44   6.3    1
(AC119033) Homo sapiens chromosome X clone RP11-3I16, *** SE...    44   6.3    1
(CU302366) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.3    1
(AC181248) Strongylocentrotus purpuratus clone R3-4010M22, W...    44   6.3    1
(AC179678) Strongylocentrotus purpuratus clone R3-60A5, WORK...    44   6.3    1
(AC176449) Strongylocentrotus purpuratus clone R3-3068J3, WO...    44   6.3    1
(AC168480) Strongylocentrotus purpuratus clone R3-3117N3, WO...    44   6.3    1
(AC019165) Homo sapiens chromosome X clone RP11-149B9, WORKI...    44   6.3    1
(AZ689471) ENTMD52TR Entamoeba histolytica Sheared DNA Entam...    44   6.3    1
(AZ540409) ENTFR68TF Entamoeba histolytica Sheared DNA Entam...    44   6.3    1
(ET074965) QM0AAB1CD11FM1 CCER1 Citrus clementina genomic cl...    44   6.3    1
(ER471313) 1092963958430 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.3    1
(ED840817) Ynhw24170 HW-YUBAC Bos taurus genomic clone HW-YU...    44   6.3    1
(ED568182) SBA033_K23.r Sugar beet BAC library USH20 (Code S...    44   6.3    1
(DE181465) Bombyx mori genomic DNA, Fosmid clone:RO0334-M21_R.     44   6.3    1
(CZ589734) OA_BBa0182J14.f OA_BBa Oryza alta genomic clone O...    44   6.3    1
(CC503149) CH240_342E4.TARBAC13P2 CHORI-240 Bos taurus genom...    44   6.3    1
(BZ915582) CH240_58N11.TV CHORI-240 Bos taurus genomic clone...    44   6.3    1
(DN585059) 92838683 Sea Urchin primary mesenchyme cell cDNA ...    44   6.3    1
(AL136454) Human DNA sequence from clone RP11-92K2 on chromo...    38   6.5    2
(CT943645) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   6.7    3
(CU694708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.8    4
(AC073941) Homo sapiens chromosome 15 clone RP11-627D16 map ...    42   6.8    3
(CR954188) Medicago truncatula chromosome 5 clone mth2-193f1...    34   7.7    4
(AC093756) Homo sapiens BAC clone RP11-56A1 from 2, complete...    42   7.7    2
(CK004570) AGENCOURT_16390436 NIH_MGC_229 Homo sapiens cDNA ...    40   9.2    2
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   9.6    7

>(BJ434234) Dictyostelium discoideum cDNA clone:ddv16d08, 3' end,
           single read.
          Length = 652

 Score =  361 bits (182), Expect(5) = 0.0
 Identities = 182/182 (100%)
 Strand = Plus / Minus


Query: 226 agaagatacaaaatcagaatgggagagagtaagaaatatgattgaaaataataaaaatgg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agaagatacaaaatcagaatgggagagagtaagaaatatgattgaaaataataaaaatgg 378


Query: 286 tgatactgatagtacaaataaaacaacaaaaagagaggaatggatgacaatgatgccaac 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgatactgatagtacaaataaaacaacaaaaagagaggaatggatgacaatgatgccaac 318


Query: 346 tggtagaattgattcaatgtcaaatagacaattcagtcaaaaaggtaatgttggttcaat 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tggtagaattgattcaatgtcaaatagacaattcagtcaaaaaggtaatgttggttcaat 258


Query: 406 at 407
           ||
Sbjct: 257 at 256

 Score =  246 bits (124), Expect(5) = 0.0
 Identities = 124/124 (100%)
 Strand = Plus / Minus


Query: 431 ggaggaactactcctgttgaaggttctaaacaattatttgaaaaattaagacaacaagaa 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggaggaactactcctgttgaaggttctaaacaattatttgaaaaattaagacaacaagaa 173


Query: 491 actgaagaaaaaatgaagcaatataatgataaaaacagatcctcttccttgttatcaatg 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 actgaagaaaaaatgaagcaatataatgataaaaacagatcctcttccttgttatcaatg 113


Query: 551 cacc 554
           ||||
Sbjct: 112 cacc 109

 Score =  145 bits (73), Expect(5) = 0.0
 Identities = 73/73 (100%)
 Strand = Plus / Minus


Query: 589 caatagtaataaaaaagattacacattcaatagagatgaagaattacaaataagtaaagt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  caatagtaataaaaaagattacacattcaatagagatgaagaattacaaataagtaaagt 15


Query: 649 tgataaagaacat 661
           |||||||||||||
Sbjct: 14  tgataaagaacat 2

 Score =  109 bits (55), Expect(5) = 0.0
 Identities = 55/55 (100%)
 Strand = Plus / Minus


Query: 95  gcaattggcccatctagaattggaccaacaattggtccatcaattggaccatcaa 149
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gcaattggcccatctagaattggaccaacaattggtccatcaattggaccatcaa 514

 Score = 77.8 bits (39), Expect(5) = 0.0
 Identities = 39/39 (100%)
 Strand = Plus / Minus


Query: 11  ataagtaaaagagttattggtccaagattagatgatgac 49
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ataagtaaaagagttattggtccaagattagatgatgac 614

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 642,525,636
Number of extensions: 43669617
Number of successful extensions: 4078010
Number of sequences better than 10.0: 99
Length of query: 661
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 638
Effective length of database: 93,106,754,628
Effective search space: 59402109452664
Effective search space used: 59402109452664
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10406-1 (Contig-U10406-1Q) /CSM_Contig/Contig-U10406-1Q.Seq.d
         (661 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031745_27(AL031745|pid:none) Plasmodium falciparum DNA from MA...    34   4.3

>AL031745_27(AL031745|pid:none) Plasmodium falciparum DNA from
           MAL1P2.  &AL844501_36(AL844501|pid:none)
          Length = 1472

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 233 TKSEWERVRNMIENNKNGDTDSTNKTTKREEWMTMMPTGRIDSMSN 370
           T  + E + NM ENN N   D  NK TK+ E  T     + D + N
Sbjct: 208 TSKKQENILNMFENNLNYSIDKLNKKTKKYEIFTQKENIKSDVLQN 253

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 523,138,858
Number of extensions: 6506865
Number of successful extensions: 13418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13395
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 96
Effective length of database: 643,635,439
Effective search space: 61789002144
Effective search space used: 61789002144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.22  gvh: 0.20  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U10406-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0