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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10390-1
Contig ID Contig-U10390-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10390-1 (Contig-U10390-1Q) /CSM_Contig/Contig-U10390-1Q.Seq.d
TTATCAACCTTTTTATTAAAAAAAATAAAAAGACCAAAACCATGGTTAAT
AAAAGAGTCGAAAATATCAATAAAAATGAAATAAAATTTAAAGATGAAGA
AATTATTAAACAACAATATTTATCACCAGACGAAAATGAATTTCAAGTAA
TATCATCAACTACAACAAAGAATAGAAAGAATAAAGCAATTGTAGAAAAA
GAAAAAAATAATAAAGTACATGAAATCATTATAGATAATACAAATAATAC
AGTAATCACTAAAACTCCACCACCATCATCACCAAAAGGTAATAATAATA
AAAATAATAATAATAACAATAATAATAATAATGATAATAATGAACATATT
GAAAATAGTAAATCAAAAAAATCAAAAAAATCAACATCAGCAGCAGCAGC
AGCAGGCAACAACAATAGTAAATTAATAATAAAAAAGAAATATTAAGGAT
CATTTAACAATAATTTAAAATTTGTTAGGGCAAGTGGCATTTTCATGTTT
TTATATTATTTAACAATGATGTATGTACGTTATCAACATAGAGGAGCAAT
TGGATTTGCTGATACATTATGGTTATGTAATTTATCGATTGTATTTGGAT
TCATTTCGATCGCAGTCAATAAACCAATCTTTTTAGGTATCGCTTGCAAT
TGTACATTAATAGTTCATGCATTATGGGTTGTTGATGTTGTGGCTTGGTT
AATCACTGGTTCCTTCCCATTGGGTAATGCAGAATATATTAGTTGGCCAA
CTATCACTTGGGGTGAAATTATCACTACAACTCATCATGCTTGGTTCGTA
CCATTATCTATGATTTGTCTTCATAGAAATGGTGGTTATCCTTACGGTGC
TTGGTCAGGTTCAATGTTATGTGTAATACCAGTAGTATATTTATCAAAAT
TATTCCCAAAGATTTTAGTTTTACCTGATAATTCAACTTTTTATTTAAAT
ATTAATATGGCCCACGAATGGTGGAGTGATATGAATGGCTGGCCATTTTC
TTTAATTCCAAATGATCCAGCCCAATATTATTTCTTTTTACTTAGTTTTT
CATTAGTATTATTTACAACTGCTCATTTNCTTAATGAGTATTAGTTTGTT
ATATCG
Gap no gap
Contig length 1106
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5098184
End point 5099290
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 4
Link to clone list U10390
List of clone(s) 

est1=VFH101F,1,562
est2=VFL581F,159,351
est3=VFL581Z,381,1107
est4=VFH101Z,555,1105
Translated Amino Acid sequence 
inlfikknkktktmvnkrveninkneikfkdeeiikqqylspdenefqvisstttknrkn
kaivekeknnkvheiiidntnntvitktpppsspkgnnnknnnnnnnnnndnnehiensk
skkskkstsaaaaagnnnskliikkky*GSFNNNLKFVRASGIFMFLYYLTMMYVRYQHR
GAIGFADTLWLCNLSIVFGFISIAVNKPIFLGIACNCTLIVHALWVVDVVAWLITGSFPL
GNAEYISWPTITWGEIITTTHHAWFVPLSMICLHRNGGYPYGAWSGSMLCVIPVVYLSKL
FPKILVLPDNSTFYLNINMAHEWWSDMNGWPFSLIPNDPAQYYFFLLSFSLVLFTTAHXL
NEY*fvis
Translated Amino Acid sequence (All Frames) 
Frame A:
lstfllkkikrpkpwlikeskisikmk*nlkmkkllnnniyhqtkmnfk*yhqlqqrier
ikql*kkkkiikymksl*iiqiiq*slklhhhhhqkviiikiiiitiiiimiimnilkiv
nqknqknqhqqqqqqattivn***krnikdhltii*nllgqvafscfyii*q*cmyvini
eeqldllihygyviyrlyldsfrsqsinqsf*vslaivh**fmhygllmlwlg*slvpsh
wvmqnilvgqlslgvklslqlimlgsyhyl*fvfiemvviltvlgqvqcyv*yq*yiyqn
ysqrf*fyliiqlfi*iliwptnggvi*maghfl*fqmiqpniisfylvfh*yylqllix
lmsislly


Frame B:
yqpfy*kk*kdqnhg**ksrkyq*k*nki*r*rny*ttifitrrk*issniinynke*ke
*sncrkrkk**st*nhyr*yk*ysnh*nsttiitkr****k****q********ty*k**
ikkikkinisssssrqqq**innkkeilrii*q*fkic*gkwhfhvfilfnndvctlst*
rsnwic*yimvm*fidciwihfdrsq*tnlfryrlqlyinsscimgc*ccglvnhwflpi
g*criy*lanyhlg*nyhynssclvrtiiydlss*kwwlslrclvrfnvmcntssifiki
ipkdfsft**fnflfky*ygprmve*yewlaiffnsk*sspilflft*ffisiiyncsfx
**vlvcyi


Frame C:
inlfikknkktktmvnkrveninkneikfkdeeiikqqylspdenefqvisstttknrkn
kaivekeknnkvheiiidntnntvitktpppsspkgnnnknnnnnnnnnndnnehiensk
skkskkstsaaaaagnnnskliikkky*GSFNNNLKFVRASGIFMFLYYLTMMYVRYQHR
GAIGFADTLWLCNLSIVFGFISIAVNKPIFLGIACNCTLIVHALWVVDVVAWLITGSFPL
GNAEYISWPTITWGEIITTTHHAWFVPLSMICLHRNGGYPYGAWSGSMLCVIPVVYLSKL
FPKILVLPDNSTFYLNINMAHEWWSDMNGWPFSLIPNDPAQYYFFLLSFSLVLFTTAHXL
NEY*fvis
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10390-1 (Contig-U10390-1Q)
/CSM_Contig/Contig-U10390-1Q.Seq.d
         (1106 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10390-1 (Contig-U10390-1Q) /CSM_Contig/Conti...  1384  0.0
Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11411-1 (Contig-U11411-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U10548-1 (Contig-U10548-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U05084-1 (Contig-U05084-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U04529-1 (Contig-U04529-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U14471-1 (Contig-U14471-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U14252-1 (Contig-U14252-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U14024-1 (Contig-U14024-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U13247-1 (Contig-U13247-1Q) /CSM_Contig/Conti...    36  0.078

>Contig-U10390-1 (Contig-U10390-1Q) /CSM_Contig/Contig-U10390-1Q.Seq.d
          Length = 1106

 Score = 1384 bits (698), Expect = 0.0
 Identities = 701/701 (100%)
 Strand = Plus / Plus

                                                                        
Query: 406  gcaacaacaatagtaaattaataataaaaaagaaatattaaggatcatttaacaataatt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406  gcaacaacaatagtaaattaataataaaaaagaaatattaaggatcatttaacaataatt 465

                                                                        
Query: 466  taaaatttgttagggcaagtggcattttcatgtttttatattatttaacaatgatgtatg 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466  taaaatttgttagggcaagtggcattttcatgtttttatattatttaacaatgatgtatg 525

                                                                        
Query: 526  tacgttatcaacatagaggagcaattggatttgctgatacattatggttatgtaatttat 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526  tacgttatcaacatagaggagcaattggatttgctgatacattatggttatgtaatttat 585

                                                                        
Query: 586  cgattgtatttggattcatttcgatcgcagtcaataaaccaatctttttaggtatcgctt 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  cgattgtatttggattcatttcgatcgcagtcaataaaccaatctttttaggtatcgctt 645

                                                                        
Query: 646  gcaattgtacattaatagttcatgcattatgggttgttgatgttgtggcttggttaatca 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  gcaattgtacattaatagttcatgcattatgggttgttgatgttgtggcttggttaatca 705

                                                                        
Query: 706  ctggttccttcccattgggtaatgcagaatatattagttggccaactatcacttggggtg 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  ctggttccttcccattgggtaatgcagaatatattagttggccaactatcacttggggtg 765

                                                                        
Query: 766  aaattatcactacaactcatcatgcttggttcgtaccattatctatgatttgtcttcata 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  aaattatcactacaactcatcatgcttggttcgtaccattatctatgatttgtcttcata 825

                                                                        
Query: 826  gaaatggtggttatccttacggtgcttggtcaggttcaatgttatgtgtaataccagtag 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  gaaatggtggttatccttacggtgcttggtcaggttcaatgttatgtgtaataccagtag 885

                                                                        
Query: 886  tatatttatcaaaattattcccaaagattttagttttacctgataattcaactttttatt 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  tatatttatcaaaattattcccaaagattttagttttacctgataattcaactttttatt 945

                                                                        
Query: 946  taaatattaatatggcccacgaatggtggagtgatatgaatggctggccattttctttaa 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  taaatattaatatggcccacgaatggtggagtgatatgaatggctggccattttctttaa 1005

                                                                        
Query: 1006 ttccaaatgatccagcccaatattatttctttttacttagtttttcattagtattattta 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ttccaaatgatccagcccaatattatttctttttacttagtttttcattagtattattta 1065

                                                     
Query: 1066 caactgctcatttncttaatgagtattagtttgttatatcg 1106
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 caactgctcatttncttaatgagtattagtttgttatatcg 1106


 Score =  325 bits (164), Expect = 6e-89
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                       
Query: 32  gaccaaaaccatggttaataaaagagtcgaaaatatcaataaaaatgaaataaaatttaa 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32  gaccaaaaccatggttaataaaagagtcgaaaatatcaataaaaatgaaataaaatttaa 91

                                                                       
Query: 92  agatgaagaaattattaaacaacaatatttatcaccagacgaaaatgaatttcaagtaat 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  agatgaagaaattattaaacaacaatatttatcaccagacgaaaatgaatttcaagtaat 151

                                                       
Query: 152 atcatcaactacaacaaagaatagaaagaataaagcaattgtag 195
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atcatcaactacaacaaagaatagaaagaataaagcaattgtag 195


 Score =  161 bits (81), Expect = 2e-39
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                       
Query: 209 taataaagtacatgaaatcattatagataatacaaataatacagtaatcactaaaactcc 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 taataaagtacatgaaatcattatagataatacaaataatacagtaatcactaaaactcc 268

                                
Query: 269 accaccatcatcaccaaaagg 289
           |||||||||||||||||||||
Sbjct: 269 accaccatcatcaccaaaagg 289


 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 342 gaacatattgaaaatagtaaatc 364
           |||||||||||||||||||||||
Sbjct: 342 gaacatattgaaaatagtaaatc 364


 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  ttatcaacctttttatt 17
          |||||||||||||||||
Sbjct: 1  ttatcaacctttttatt 17


>Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Contig-U13903-1Q.Seq.d
          Length = 1303

 Score = 38.2 bits (19), Expect = 0.020
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 938  tttttatttaaatattaat 956
            |||||||||||||||||||
Sbjct: 1264 tttttatttaaatattaat 1246


>Contig-U11411-1 (Contig-U11411-1Q) /CSM_Contig/Contig-U11411-1Q.Seq.d
          Length = 1518

 Score = 38.2 bits (19), Expect = 0.020
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 63  aatatcaataaaaatgaaataaa 85
           ||||||||||| |||||||||||
Sbjct: 230 aatatcaataataatgaaataaa 252


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,931
Number of Sequences: 6905
Number of extensions: 22931
Number of successful extensions: 3336
Number of sequences better than 10.0: 437
length of query: 1106
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1090
effective length of database: 5,564,391
effective search space: 6065186190
effective search space used: 6065186190
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.19
Homology vs DNA 
Query= Contig-U10390-1 (Contig-U10390-1Q) /CSM_Contig/Contig-U10390-1Q.Seq.d
         (1106 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434708) Dictyostelium discoideum cDNA clone:ddv24a21, 3' ...  1281   0.0    2
(BJ431649) Dictyostelium discoideum cDNA clone:ddv15a01, 3' ...  1059   0.0    1
(BJ413293) Dictyostelium discoideum cDNA clone:ddv15a01, 5' ...   232   e-154  6
(BJ416052) Dictyostelium discoideum cDNA clone:ddv24a21, 5' ...   149   7e-44  2
(AZ535282) ENTCV76TF Entamoeba histolytica Sheared DNA Entam...    38   0.003  3
(AC130926) Rattus norvegicus  BAC CH230-39O11 (Children's Ho...    42   0.008  2
(AC103077) Rattus norvegicus  BAC CH230-224J5 (Children's Ho...    42   0.008  2
(CR932833) Paramecium tetraurelia, V-ATPase a subunit 2_2 is...    48   0.054  2
(AC177002) Strongylocentrotus purpuratus clone R3-37B3, WORK...    48   0.075  4
(CT558882) A BAC library has been constructed from cultivar ...    44   0.12   2
(CR626935) Zebrafish DNA sequence from clone CH211-81A5 in l...    50   0.18   1
(CZ533061) SRAA-aac83a10.g1 Strongyloides ratti whole genome...    50   0.18   1
(AC187578) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   0.25   6
(AM481950) Vitis vinifera contig VV78X118571.5, whole genome...    40   0.28   3
(AL034557) Plasmodium falciparum MAL4P1.                           40   0.32   11
(CU905512) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.33   3
(EK266276) 1095462226941 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.38   4
(EC260619) 496370 CK02 Drosophila melanogaster cDNA clone 21...    34   0.48   3
(AL929568) Zebrafish DNA sequence from clone CH211-59K8.           42   0.53   4
(CN632749) taf05e02.x1 Hydra EST Darmstadt I Hydra magnipapi...    34   0.53   2
(CU571252) Zebrafish DNA sequence from clone CH73-203B10 in ...    48   0.58   4
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    38   0.61   8
(EK057812) 1092960045994 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.70   2
(AC128982) Rattus norvegicus clone CH230-1J1, WORKING DRAFT ...    48   0.71   1
(AC179779) Strongylocentrotus purpuratus clone R3-1015J15, W...    48   0.71   1
(AC178985) Strongylocentrotus purpuratus clone R3-1108N01, W...    48   0.71   1
(AC178532) Strongylocentrotus purpuratus clone R3-3028K18, W...    48   0.71   1
(AC163547) Bos taurus clone CH240-138L19, *** SEQUENCING IN ...    48   0.71   1
(DH836481) Rattus norvegicus DNA, BAC clone: RNB1-445P10, 3'...    48   0.71   1
(DH666867) Rattus norvegicus DNA, BAC clone: RNB1-215E14, 3'...    48   0.71   1
(CL899274) abg53b07.y1 Soybean random, unfiltered genomic li...    48   0.71   1
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    42   0.77   10
(EA116516) Sequence 700 from patent US 7205146.                    36   0.79   5
(AC025837) Homo sapiens clone RP11-200K12, WORKING DRAFT SEQ...    36   0.79   5
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.85   12
(EK085671) 1092961147714 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.88   2
(ER832821) PPTI324TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   0.89   2
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    32   1.0    13
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    32   1.1    12
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   1.1    7
(AL844507) Plasmodium falciparum chromosome 8.                     36   1.1    14
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    42   1.2    5
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   1.2    16
(DD010735) Diagnosis of known genetic Parameters within the ...    34   1.2    2
(AC012593) Homo sapiens BAC clone RP11-511B24 from 2, comple...    34   1.2    6
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    38   1.2    9
(AX344560) Sequence 11 from Patent WO0200932.                      34   1.4    2
(AC104161) Homo sapiens chromosome 3 clone RP11-32J15, compl...    36   1.5    2
(AP004951) Lotus japonicus genomic DNA, chromosome 2, clone:...    36   1.5    5
(AC074017) Homo sapiens chromosome 3 clone RP11-231J17, WORK...    36   1.5    2
(AC189261) Brassica rapa subsp. pekinensis clone KBrB021P11,...    36   1.6    5
(AM481206) Vitis vinifera, whole genome shotgun sequence, co...    32   1.7    2
(AC140904) Homo sapiens chromosome 16 clone RP11-837J3, WORK...    34   1.7    6
(EA771740) Sequence 24 from patent US 7381808.                     34   1.7    2
(DD080734) Method and nucleic acids for the differentiation ...    34   1.7    2
(AX659053) Sequence 24 from Patent WO02103041.                     34   1.7    2
(AX657779) Sequence 24 from Patent WO02103042.                     34   1.7    2
(AX345807) Sequence 878 from Patent WO0200928.                     34   1.7    2
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    32   1.8    11
(AX349185) Sequence 111 from Patent WO0202808.                     34   1.8    2
(AX347464) Sequence 111 from Patent WO0200705.                     34   1.8    2
(FG762458) G1146P331FL7.T0 Anolis carolinensis pooled normal...    32   1.9    2
(FG742760) G1145P325FN19.T0 Anolis carolinensis pooled norma...    32   1.9    2
(FG709579) G1144P333RC17.T0 Anolis carolinensis pooled norma...    32   1.9    2
(FG744879) G1145P314FE24.T0 Anolis carolinensis pooled norma...    32   1.9    2
(FG744927) G1145P314RE24.T0 Anolis carolinensis pooled norma...    32   1.9    2
(FG762504) G1146P331RL7.T0 Anolis carolinensis pooled normal...    32   1.9    2
(FG742904) G1145P325RN19.T0 Anolis carolinensis pooled norma...    32   1.9    2
(FG767448) G1147P343FJ6.T0 Anolis carolinensis pooled normal...    32   2.0    2
(AC216321) Pteropus vampyrus clone CH279-198K24, WORKING DRA...    32   2.0    10
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   2.1    11
(BH580118) BOHLO31TR BOHL Brassica oleracea genomic clone BO...    36   2.3    2
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio...    36   2.4    6
(DX523313) GH_MBb0068E02f GH_MBb Gossypium hirsutum genomic ...    36   2.5    3
(AM480779) Vitis vinifera contig VV78X202140.8, whole genome...    38   2.5    2
(CU012054) Zebrafish DNA sequence from clone DKEYP-117D7 in ...    46   2.8    1
(BX470238) Zebrafish DNA sequence from clone DKEY-11F14 in l...    46   2.8    1
(BX294162) Zebrafish DNA sequence from clone CH211-270C5 in ...    46   2.8    1
(CU372906) Mouse DNA sequence from clone DN-226F16 on chromo...    46   2.8    1
(AF506028) Poncirus trifoliata citrus tristeza virus resista...    46   2.8    1
(AC019102) Homo sapiens BAC clone RP11-457A20 from 2, comple...    46   2.8    1
(AC141998) Rattus norvegicus clone CH230-295O7, *** SEQUENCI...    46   2.8    1
(AC098556) Rattus norvegicus clone CH230-81P1, *** SEQUENCIN...    46   2.8    1
(AC096140) Rattus norvegicus clone CH230-10O20, *** SEQUENCI...    46   2.8    1
(CT476818) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   2.8    1
(BX640405) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   2.8    1
(AC172181) Atelerix albiventris clone LB4-438I4, WORKING DRA...    46   2.8    1
(AG629229) Macaca fuscata fuscata DNA, clone: MSB2-028L19_R,...    46   2.8    1
(EE631768) CHEL3036.b1_H16.ab1 CHE(LMS) serpentine sunflower...    46   2.8    1
(CB192855) AGENCOURT_11214797 NIH_MGC_135 Mus musculus cDNA ...    46   2.8    1
(AL035475) Plasmodium falciparum MAL4P2.                           36   3.1    10
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    38   3.2    6
(AM450060) Vitis vinifera contig VV78X161902.7, whole genome...    38   3.3    4
(AC172183) Atelerix albiventris clone LB4-44A12, WORKING DRA...    40   3.6    4
(AY077835) Goatpox virus Pellor, complete genome.                  36   3.7    10
(AY077836) Goatpox virus G20-LKV, complete genome.                 36   3.7    10
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    36   3.9    10
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    36   3.9    10
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    36   3.9    10
(AC096589) Homo sapiens BAC clone RP11-744G10 from 2, comple...    38   4.0    5

>(BJ434708) Dictyostelium discoideum cDNA clone:ddv24a21, 3' end,
            single read.
          Length = 729

 Score = 1281 bits (646), Expect(2) = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Minus


Query: 458  caataatttaaaatttgttagggcaagtggcattttcatgtttttatattatttaacaat 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  caataatttaaaatttgttagggcaagtggcattttcatgtttttatattatttaacaat 591


Query: 518  gatgtatgtacgttatcaacatagaggagcaattggatttgctgatacattatggttatg 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  gatgtatgtacgttatcaacatagaggagcaattggatttgctgatacattatggttatg 531


Query: 578  taatttatcgattgtatttggattcatttcgatcgcagtcaataaaccaatctttttagg 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  taatttatcgattgtatttggattcatttcgatcgcagtcaataaaccaatctttttagg 471


Query: 638  tatcgcttgcaattgtacattaatagttcatgcattatgggttgttgatgttgtggcttg 697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  tatcgcttgcaattgtacattaatagttcatgcattatgggttgttgatgttgtggcttg 411


Query: 698  gttaatcactggttccttcccattgggtaatgcagaatatattagttggccaactatcac 757
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410  gttaatcactggttccttcccattgggtaatgcagaatatattagttggccaactatcac 351


Query: 758  ttggggtgaaattatcactacaactcatcatgcttggttcgtaccattatctatgatttg 817
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  ttggggtgaaattatcactacaactcatcatgcttggttcgtaccattatctatgatttg 291


Query: 818  tcttcatagaaatggtggttatccttacggtgcttggtcaggttcaatgttatgtgtaat 877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  tcttcatagaaatggtggttatccttacggtgcttggtcaggttcaatgttatgtgtaat 231


Query: 878  accagtagtatatttatcaaaattattcccaaagattttagttttacctgataattcaac 937
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230  accagtagtatatttatcaaaattattcccaaagattttagttttacctgataattcaac 171


Query: 938  tttttatttaaatattaatatggcccacgaatggtggagtgatatgaatggctggccatt 997
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170  tttttatttaaatattaatatggcccacgaatggtggagtgatatgaatggctggccatt 111


Query: 998  ttctttaattccaaatgatccagcccaatattatttctttttacttagtttttcattagt 1057
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110  ttctttaattccaaatgatccagcccaatattatttctttttacttagtttttcattagt 51


Query: 1058 attatttacaactgctcatttncttaatgagtattagtttgttatatcg 1106
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50   attatttacaactgctcatttncttaatgagtattagtttgttatatcg 2

 Score = 89.7 bits (45), Expect(2) = 0.0
 Identities = 45/45 (100%)
 Strand = Plus / Minus


Query: 413 caatagtaaattaataataaaaaagaaatattaaggatcatttaa 457
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caatagtaaattaataataaaaaagaaatattaaggatcatttaa 652

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,153,213,093
Number of extensions: 73874360
Number of successful extensions: 7013990
Number of sequences better than 10.0: 146
Length of query: 1106
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1082
Effective length of database: 97,308,875,965
Effective search space: 105288203794130
Effective search space used: 105288203794130
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10390-1 (Contig-U10390-1Q) /CSM_Contig/Contig-U10390-1Q.Seq.d
         (1106 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294156_94(BX294156|pid:none) Rhodopirellula baltica SH 1 compl...    38   0.72
CP000264_2214(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    37   1.6
CP000682_198(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    36   2.1
CP001019_1044(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co...    36   2.7
AK228906_1(AK228906|pid:none) Arabidopsis thaliana mRNA for suga...    35   3.6
(Q94AF9) RecName: Full=Sugar transporter ERD6-like 11;  &AK31709...    35   3.6
CR382136_453(CR382136|pid:none) Debaryomyces hansenii strain CBS...    35   3.6
(Q93Z80) RecName: Full=Sugar transporter ERD6-like 10;  &AY05805...    35   4.7
AE014186_441(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    34   8.0

>BX294156_94(BX294156|pid:none) Rhodopirellula baltica SH 1 complete
            genome; segment 24/24.
          Length = 235

 Score = 37.7 bits (86), Expect = 0.72
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 10/188 (5%)
 Frame = +3

Query: 498  FLYYLTMMYVRYQHRGAIGFADTLWLCNLSIVFGFISIAVNKPIFLGIACNCTLIVHALW 677
            F+  LT  Y R       G  + L+ C++++     ++   +PIF  +A     I   LW
Sbjct: 21   FVAVLTPYYWR-----EYGPTNFLYFCDVALFLAVAAVWTQRPIFASMAAVGITIPQLLW 75

Query: 678  VVDVVAWLITGSFPLGNAEYISWPTITWGEIITTTHHAWFVPLSMICLHRNGGYPYG--- 848
             VD V  L  G    G  +Y+  P I+      +  H W +P+ ++ L    GY
Sbjct: 76   QVDFVGQLF-GVPATGMTDYMFDPGISLFARGLSFFHFW-LPILLLYLVWRLGYDRRALL 133

Query: 849  AWSGSMLCVIPVVYLSKLFPKILVLPDNSTFYLNINMAH-------EWWSDMNGWPFSLI 1007
            AW+G+   ++ + Y   L P      D      NIN  +       + W     W   L
Sbjct: 134  AWTGTAWLLLLICYF--LMPPAGATLDFPNQPHNINYVYGMDDTQPQQWMPPQAWLGMLF 191

Query: 1008 PNDPAQYY 1031
               PA  Y
Sbjct: 192  IGLPALLY 199

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,464,160,264
Number of extensions: 29091687
Number of successful extensions: 113744
Number of sequences better than 10.0: 9
Number of HSP's gapped: 113704
Number of HSP's successfully gapped: 9
Length of query: 368
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 238
Effective length of database: 624,409,729
Effective search space: 148609515502
Effective search space used: 148609515502
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.96  gvh: 0.57  alm: 0.26  top: 0.50  tms: 0.27  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U10390-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0