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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01659-1
Contig ID Contig-U01659-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01659-1 (Contig-U01659-1Q) /CSM_Contig/Contig-U01659-1Q.Seq.d
CAAATAATTATTTTTCATTAATTTTATTAGGAAGTGTTGATTCAACATTC
TCATTATGGTTATCACCACCTACTACTACTACTACTACTACTACCGATAC
CAATACCAATAATAGTATTAAGAGATCGCCACCTCAACTTATAATGGTTT
GTAAAGAAGTTTTTAAAAATACAATACAAGATGTTTCATGGTGTCCTGAT
GGTTTATCATTTTTTGTTTGTTCAATTGATGGAACTATTGCCTATATATC
ATTGAAACTACATGAAATTAGTGATGGATCACTTCAACCTATCAGTCATA
GAGAAAAACAACAATTCTTTAAAAAATCTTATAATTTTAATTTACCAAAT
GAAATAGAACTATTTATTCATAAAAGAAATCAAATACCAACTAAACCAAT
CACTAGAACTACCCAAGAAGTACTATNTACTCAAAAACAGTCAACAACTT
TAACTGGAAAGAAAAGAATAACACCAGTTACAACTACATATTAAAAATTC
TTCTATTTTTGTGGATTTAAATAAACATGGATTTAGATTATAATTATAAA
TTGTTGGGGAACTGTAAAATAACTCTTTTATTAAAACAAAAAAATAAAAA
AAAATAATTAAAGAA
Gap no gap
Contig length 615
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 31552
End point 32167
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01659
List of clone(s) 

est1=SSE152Z,1,616
Translated Amino Acid sequence 
NNYFSLILLGSVDSTFSLWLSPPTTTTTTTTDTNTNNSIKRSPPQLIMVCKEVFKNTIQD
VSWCPDGLSFFVCSIDGTIAYISLKLHEISDGSLQPISHREKQQFFKKSYNFNLPNEIEL
FIHKRNQIPTKPITRTTQEVLXTQKQSTTLTGKKRITPVTTTY*kffyfcgfk*twi*ii
iincwgtvk*lfy*nkkikknn*r
Translated Amino Acid sequence (All Frames) 
Frame A:
qiiifh*fy*evliqhshygyhhllllllllpipipiivlrdrhlnl*wfvkkflkiqyk
mfhgvlmvyhflfvqlmellpiyh*nymklvmdhfnlsvieknnnslknliiliyqmk*n
ylfikeikyqlnqslelpkkyyxlknsqql*lerke*hqlqlhiknssifvdlnkhgfrl
*l*ivgel*nnsfiktkk*kkiike


Frame B:
k*lffinfirkc*fnilimvittyyyyyyyyryqyq**y*eiatstyngl*rsf*kyntr
cfmvs*wfiifclfn*wnyclyiiett*n**witstyqs*rkttil*kil*f*ftk*nrt
iys*kksntn*tnh*nyprstxysktvnnfnwkeknntsynyilkillflwi*inmdldy
nykllgnckitlllkqknkkk*lk


Frame C:
NNYFSLILLGSVDSTFSLWLSPPTTTTTTTTDTNTNNSIKRSPPQLIMVCKEVFKNTIQD
VSWCPDGLSFFVCSIDGTIAYISLKLHEISDGSLQPISHREKQQFFKKSYNFNLPNEIEL
FIHKRNQIPTKPITRTTQEVLXTQKQSTTLTGKKRITPVTTTY*kffyfcgfk*twi*ii
iincwgtvk*lfy*nkkikknn*r
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01659-1 (Contig-U01659-1Q)
/CSM_Contig/Contig-U01659-1Q.Seq.d
         (615 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01659-1 (Contig-U01659-1Q) /CSM_Contig/Conti...   961  0.0
Contig-U13250-1 (Contig-U13250-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12869-1 (Contig-U12869-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13924-1 (Contig-U13924-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U12402-1 (Contig-U12402-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U04766-1 (Contig-U04766-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U14567-1 (Contig-U14567-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U11608-1 (Contig-U11608-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U11189-1 (Contig-U11189-1Q) /CSM_Contig/Conti...    36  0.060

>Contig-U01659-1 (Contig-U01659-1Q) /CSM_Contig/Contig-U01659-1Q.Seq.d
          Length = 615

 Score =  961 bits (485), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Plus

                                                                       
Query: 95  cgataccaataccaataatagtattaagagatcgccacctcaacttataatggtttgtaa 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  cgataccaataccaataatagtattaagagatcgccacctcaacttataatggtttgtaa 154

                                                                       
Query: 155 agaagtttttaaaaatacaatacaagatgtttcatggtgtcctgatggtttatcattttt 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 agaagtttttaaaaatacaatacaagatgtttcatggtgtcctgatggtttatcattttt 214

                                                                       
Query: 215 tgtttgttcaattgatggaactattgcctatatatcattgaaactacatgaaattagtga 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgtttgttcaattgatggaactattgcctatatatcattgaaactacatgaaattagtga 274

                                                                       
Query: 275 tggatcacttcaacctatcagtcatagagaaaaacaacaattctttaaaaaatcttataa 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tggatcacttcaacctatcagtcatagagaaaaacaacaattctttaaaaaatcttataa 334

                                                                       
Query: 335 ttttaatttaccaaatgaaatagaactatttattcataaaagaaatcaaataccaactaa 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttttaatttaccaaatgaaatagaactatttattcataaaagaaatcaaataccaactaa 394

                                                                       
Query: 395 accaatcactagaactacccaagaagtactatntactcaaaaacagtcaacaactttaac 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 accaatcactagaactacccaagaagtactatntactcaaaaacagtcaacaactttaac 454

                                                                       
Query: 455 tggaaagaaaagaataacaccagttacaactacatattaaaaattcttctatttttgtgg 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggaaagaaaagaataacaccagttacaactacatattaaaaattcttctatttttgtgg 514

                                                                       
Query: 515 atttaaataaacatggatttagattataattataaattgttggggaactgtaaaataact 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atttaaataaacatggatttagattataattataaattgttggggaactgtaaaataact 574

                   
Query: 575 cttttatt 582
           ||||||||
Sbjct: 575 cttttatt 582


 Score =  137 bits (69), Expect = 2e-32
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaataattatttttcattaattttattaggaagtgttgattcaacattctcattatggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaataattatttttcattaattttattaggaagtgttgattcaacattctcattatggt 60

                   
Query: 61 tatcaccac 69
          |||||||||
Sbjct: 61 tatcaccac 69


>Contig-U13250-1 (Contig-U13250-1Q) /CSM_Contig/Contig-U13250-1Q.Seq.d
          Length = 625

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 97  ataccaataccaataatagtattaa 121
           |||||||||||||||||| ||||||
Sbjct: 114 ataccaataccaataataatattaa 138


>Contig-U12869-1 (Contig-U12869-1Q) /CSM_Contig/Contig-U12869-1Q.Seq.d
          Length = 848

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 177 caagatgtttcatggtgtcctgatggtttatcattttttgtttgttcaattgatgg 232
           |||||| ||||||||||| | |||||||  |||||| |||  ||||||| ||||||
Sbjct: 74  caagatatttcatggtgttcagatggttattcatttgttgcatgttcaactgatgg 129


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,706
Number of Sequences: 8361
Number of extensions: 17706
Number of successful extensions: 2076
Number of sequences better than 10.0: 248
length of query: 615
length of database: 7,895,291
effective HSP length: 16
effective length of query: 599
effective length of database: 7,761,515
effective search space: 4649147485
effective search space used: 4649147485
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 3
Homology vs DNA 
Query= Contig-U01659-1 (Contig-U01659-1Q) /CSM_Contig/Contig-U01659-1Q.Seq.d
         (615 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037666) Dictyostelium discoideum slug cDNA, clone SSE152.      961   0.0    2
(AL844509) Plasmodium falciparum chromosome 13.                    38   8e-05  15
(DD010735) Diagnosis of known genetic Parameters within the ...    40   0.002  12
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         42   0.003  17
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.005  16
(AC207707) Glycine tomentella clone gtd1-153c22, WORKING DRA...    52   0.026  1
(AC180529) Strongylocentrotus purpuratus clone R3-3098G16, W...    46   0.027  3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.083  15
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.085  15
(AX345368) Sequence 439 from Patent WO0200928.                     40   0.088  3
(AC230985) Bos taurus clone CH240-493P4, WORKING DRAFT SEQUE...    38   0.090  8
(AC181626) Strongylocentrotus purpuratus clone R3-1105I14, W...    40   0.093  4
(AC218883) Pteropus vampyrus clone CH279-316A8, WORKING DRAF...    50   0.10   1
(AC184295) Strongylocentrotus purpuratus clone R3-32N1, WORK...    34   0.12   5
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   0.18   19
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   0.22   18
(ER440174) 1092963811675 Global-Ocean-Sampling_GS-35-01-01-1...    44   0.23   2
(CR962134) Medicago truncatula chromosome 5 clone mte1-40n1,...    32   0.23   8
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.24   15
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    40   0.24   9
(BZ110560) CH230-207A18.TJB CHORI-230 Segment 1 Rattus norve...    32   0.26   3
(AC187148) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    34   0.27   6
(AC180858) Strongylocentrotus purpuratus clone R3-3069F23, W...    40   0.28   3
(AM456562) Vitis vinifera contig VV78X151044.6, whole genome...    30   0.30   5
(BZ394936) EINAN08TR EI_10_12_KB Entamoeba invadens genomic ...    34   0.30   2
(AC176274) Strongylocentrotus purpuratus clone R3-3060C4, WO...    38   0.38   4
(AL935061) Mouse DNA sequence from clone RP23-186P20 on chro...    48   0.40   1
(DQ102703) Coreana raphaelis mitochondrion, complete genome.       48   0.40   1
(AC217495) Solanum lycopersicum chromosome 12 clone LE_HBa-2...    48   0.40   1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ...    32   0.42   14
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.51   11
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    38   0.52   5
(AC112679) Mus musculus chromosome 1, clone RP23-199H14, com...    42   0.54   3
(CU313317) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.55   5
(AC178341) Strongylocentrotus purpuratus clone R3-3105C09, W...    34   0.58   6
(CT573185) Zebrafish DNA sequence from clone DKEYP-84G8 in l...    44   0.62   2
(AY863212) Rhizopus oryzae mitochondrion, complete genome.         34   0.68   6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.70   9
(CU856289) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.71   5
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   0.71   7
(EH014935) USDA-FP_187586 Lysiphlebus testaceipes adult whol...    38   0.76   2
(AL845419) Zebrafish DNA sequence from clone CH211-198O19 in...    36   0.77   6
(DE907714) Macropus eugenii DNA, BAC clone: MEB1-090A16_F, 5...    44   0.82   2
(BX510307) Zebrafish DNA sequence from clone DKEY-9F17 in li...    40   0.84   5
(AL355853) Human DNA sequence from clone RP11-36B21 on chrom...    38   0.84   5
(AM437531) Vitis vinifera contig VV78X198384.4, whole genome...    36   0.93   4
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    32   1.1    17
(EC825759) SME00006913 esmbsro2 Sawyeria marylandensis cDNA,...    34   1.1    2
(EK355315) 1095468500887 Global-Ocean-Sampling_GS-31-01-01-1...    34   1.1    2
(AC202522) Medicago truncatula clone mth2-9i11, WORKING DRAF...    34   1.1    5
(AX344555) Sequence 6 from Patent WO0200932.                       36   1.1    8
(AX344566) Sequence 17 from Patent WO0200932.                      34   1.1    8
(EK438063) 1095521131638 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.3    3
(CU927971) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.4    5
(AC008057) Homo sapiens chromosome 20 clone P1-10263, WORKIN...    40   1.4    5
(AC233256) Biomphalaria glabrata BAC clone BG_BBa-137H24 fro...    34   1.4    7
(AC195725) Dasypus novemcinctus clone VMRC5-199B10, WORKING ...    42   1.5    5
(AC101911) Mus musculus chromosome 19, clone RP24-374E20, co...    46   1.6    1
(AM480043) Vitis vinifera contig VV78X273533.10, whole genom...    46   1.6    1
(GN007596) Sequence 37 from Patent EP2014669.                      46   1.6    1
(AC184263) Strongylocentrotus purpuratus clone R3-3015O23, W...    46   1.6    1
(EJ202290) 1092344309676 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.6    1
(DN678165) CFW97-F01.x1d-t SHGC-CFW Gasterosteus aculeatus c...    46   1.6    1
(EU746612) Nasonia longicornis strain IV7 NADH dehydrogenase...    32   1.8    4
(CU466265) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   2.0    5
(BH002489) BMBAC02P10T7_PSU Brugia malayi Genomic Bac Librar...    36   2.1    2
(CB563456) AGENCOURT_13322866 NICHD_XGC_Tad2 Xenopus laevis ...    34   2.1    3
(AC189397) Brassica rapa subsp. pekinensis clone KBrB056C05,...    40   2.2    6
(CU570965) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.3    5
(BW172555) Ciona intestinalis cDNA, clone:rcinc022p21, 3' en...    36   2.3    2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    38   2.4    15
(BW076463) Ciona intestinalis cDNA, clone:rcieg069f19, 3' en...    36   2.4    2
(AC147097) Pan troglodytes BAC clone RP43-51D4 from chromoso...    40   2.5    4
(FF723710) XABT39884.rev Gateway compatible cien cDNA librar...    36   2.5    2
(FF697590) XABT107920.rev Gateway compatible cien cDNA libra...    36   2.6    2
(FM966895) Glossina morsitans morsitans EST, clone GMsg78f03...    36   2.6    2
(FF754598) XABT62005.rev Gateway compatible cien cDNA librar...    36   2.6    2
(FK199288) XABT210476.g1 Gateway compatible cien cDNA librar...    36   2.7    2
(FM980668) Glossina morsitans morsitans EST, clone GMsg154b0...    36   2.7    2
(BW003086) Ciona intestinalis cDNA, clone:rcibd018n14, 3' en...    36   2.7    2
(FF761011) XABT66831.rev Gateway compatible cien cDNA librar...    36   2.7    2
(BW401761) Ciona intestinalis cDNA, clone:ciem837h06, 3'end,...    36   3.0    2
(BW488233) Ciona intestinalis cDNA, clone:cima018i06, 3'end,...    36   3.0    2
(BW133771) Ciona intestinalis cDNA, clone:rcign034m11, 3' en...    36   3.0    2
(AC169769) Bos taurus clone CH240-201M11, WORKING DRAFT SEQU...    34   3.0    2
(BW406829) Ciona intestinalis cDNA, clone:ciem852j02, 3'end,...    36   3.0    2
(CU570650) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.0    2
(CU694863) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.1    2
(CT339565) Sus scrofa genomic clone CH242-314D22, genomic su...    40   3.1    2
(BW176151) Ciona intestinalis cDNA, clone:rciht011a11, 3' en...    36   3.1    2
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      34   3.1    16
(EU342371) Welwitschia mirabilis chloroplast, complete genome.     34   3.1    2
(AP009568) Welwitschia mirabilis chloroplast DNA, complete g...    34   3.1    2
(CU655849) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    34   3.1    2
(CU571155) M.truncatula DNA sequence from clone MTH2-78H8 on...    34   3.2    2
(DQ229107) Chara vulgaris chloroplast, complete genome.            34   3.2    7
(AX344560) Sequence 11 from Patent WO0200932.                      34   3.2    8
(CU896651) M.truncatula DNA sequence from clone MTE1-27C22 o...    34   3.3    2
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    30   3.3    10
(CU914741) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.3    7
(AC189414) Brassica rapa subsp. pekinensis clone KBrB061K11,...    34   3.4    5
(CG825953) SOYAK14TH LargeInsertSoybeanGenLib Glycine max ge...    40   3.5    2
(CP000382) Clostridium novyi NT, complete genome.                  32   3.5    18
(AC152739) Bos taurus clone CH240-9G19, *** SEQUENCING IN PR...    44   3.5    2
(AX344552) Sequence 3 from Patent WO0200932.                       38   3.5    6
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    32   3.5    10
(CC713217) OGLBL48TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   3.6    2
(CU855813) Zebrafish DNA sequence from clone CH73-243I7 in l...    44   3.6    3
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    32   3.9    9
(BX571763) Zebrafish DNA sequence from clone DKEY-233K3 in l...    44   3.9    4
(DQ997624) Thermus thermophilus phage YS40, complete genome.       38   4.0    6
(DT601936) wmi03-1ms1-g11 Wmi03 Welwitschia mirabilis cDNA c...    34   4.1    2
(AC024288) Homo sapiens, clone RP11-23B5, complete sequence.       36   4.1    5
(EL506720) B08_PF-SAU3A-T3-M-P29_D.AB1 Blood stage Plasmodiu...    30   4.2    3
(EL506719) B08_PF-SAU3A-T3-M-P29.AB1 Blood stage Plasmodium ...    30   4.2    3
(EI407896) CFFL-411H12-F Chlamys farreri Fosmid Library Chla...    34   4.2    2
(CV616775) L_AM-aaa22f05.b1 Hc6AS_Y Ajellomyces capsulatus c...    34   4.2    2
(CK746592) wmi01-3ms1-f10 Wmi01 Welwitschia mirabilis cDNA c...    34   4.2    2
(AC016566) Homo sapiens chromosome 5 clone CTC-547G6, comple...    38   4.2    5
(DD037706) ISOLATED HUMAN TRANSPORTER PROTEINS, NUCLEIC ACID...    38   4.3    4
(AX398707) Sequence 3 from Patent WO0220757.                       38   4.3    4
(AC146157) Pan troglodytes BAC clone RP43-2A11 from chromoso...    36   4.4    4
(AL049633) Human DNA sequence from clone RP5-1069O1 on chrom...    40   4.5    4
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ...    36   4.6    10
(AC125806) Rattus norvegicus clone CH230-8L11, WORKING DRAFT...    38   4.6    4
(FP102146) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.6    6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    30   4.7    13
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   4.8    7
(AC183840) Cavia porcellus clone CH234-99K4, WORKING DRAFT S...    36   4.8    3
(AX345638) Sequence 709 from Patent WO0200928.                     36   4.9    2
(AC184848) Pan troglodytes BAC clone CH251-277H16 from chrom...    36   4.9    4
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    40   5.1    12
(AC180918) Strongylocentrotus purpuratus clone R3-3063E24, W...    38   5.1    4
(AC189315) Brassica rapa subsp. pekinensis clone KBrB035A14,...    38   5.4    4
(BX537117) Zebrafish DNA sequence from clone CH211-281N15 in...    44   5.4    4
(BX936466) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   5.4    4
(AC142264) Mus musculus BAC clone RP24-394K17 from chromosom...    42   5.4    4
(AC198280) Spermophilus tridecemlineatus clone VMRC20-568E7,...    34   5.7    7
(CT033784) Mouse DNA sequence from clone RP24-125H1 on chrom...    38   5.9    3
(BX324201) Zebrafish DNA sequence from clone CH211-143G21 in...    44   5.9    4
(AC099511) Homo sapiens chromosome 16 clone RP11-293N14, com...    34   6.0    8
(FP101887) Zebrafish DNA sequence from clone CH73-25F10 in l...    44   6.2    1
(CU861894) Zebrafish DNA sequence from clone CH73-250P19 in ...    44   6.2    1
(CU469460) Zebrafish DNA sequence from clone CH211-76H4 in l...    44   6.2    1
(CU467832) Zebrafish DNA sequence from clone CH211-39I2.           44   6.2    1
(CU151883) Zebrafish DNA sequence from clone CH211-189M4 in ...    44   6.2    1
(CT990567) Zebrafish DNA sequence from clone DKEY-146C18 in ...    44   6.2    1
(CT583652) Zebrafish DNA sequence from clone CH211-39I19 in ...    44   6.2    1
(CT573263) Zebrafish DNA sequence from clone DKEY-258A23.          44   6.2    1
(CT027578) Zebrafish DNA sequence from clone DKEY-247I3 in l...    44   6.2    1
(CR896876) Zebrafish DNA sequence from clone DKEY-27P23 in l...    44   6.2    1
(CR854834) Zebrafish DNA sequence from clone DKEYP-92B10 in ...    44   6.2    1
(CR847526) Zebrafish DNA sequence from clone DKEY-226K3 in l...    44   6.2    1
(CR759901) Zebrafish DNA sequence from clone DKEY-74E13 in l...    44   6.2    1
(CR391969) Zebrafish DNA sequence from clone CH211-131C14 in...    44   6.2    1
(CR388052) Zebrafish DNA sequence from clone CH211-178J18 in...    44   6.2    1
(CR354402) Zebrafish DNA sequence from clone CH211-119D14 in...    44   6.2    1
(BX950179) Zebrafish DNA sequence from clone DKEY-27P23 in l...    44   6.2    1
(BX936436) Zebrafish DNA sequence from clone DKEY-16H19 in l...    44   6.2    1
(BX890613) Zebrafish DNA sequence from clone DKEY-156K2 in l...    44   6.2    1
(BX842240) Zebrafish DNA sequence from clone DKEY-13I15 in l...    44   6.2    1
(BX649316) Zebrafish DNA sequence from clone DKEY-176A22 in ...    44   6.2    1
(BX548034) Zebrafish DNA sequence from clone DKEY-106M16 in ...    44   6.2    1
(BX548026) Zebrafish DNA sequence from clone CH211-193D9.          44   6.2    1
(BX544876) Zebrafish DNA sequence from clone CH211-167B20 in...    44   6.2    1
(BX539347) Zebrafish DNA sequence from clone CH211-262E15 in...    44   6.2    1
(BX537106) Zebrafish DNA sequence from clone DKEY-98P3 in li...    44   6.2    1
(BX511233) Zebrafish DNA sequence from clone CH211-152P11 in...    44   6.2    1
(BX248504) Zebrafish DNA sequence from clone CH211-72K22 in ...    44   6.2    1
(BX248232) Zebrafish DNA sequence from clone CH211-232I5 in ...    44   6.2    1
(BX088721) Zebrafish DNA sequence from clone DKEY-14M2 in li...    44   6.2    1
(BX072534) Zebrafish DNA sequence from clone DKEY-16C1.            44   6.2    1
(BX005380) Zebrafish DNA sequence from clone DKEY-82I20.           44   6.2    1
(BX001050) Zebrafish DNA sequence from clone CH211-139N6 in ...    44   6.2    1
(BX000430) Zebrafish DNA sequence from clone DKEY-9K12.            44   6.2    1
(AL974309) Zebrafish DNA sequence from clone DKEY-29D5 in li...    44   6.2    1
(AL929109) Zebrafish DNA sequence from clone CH211-134D6.          44   6.2    1
(AL928701) Zebrafish DNA sequence from clone CH211-201H21.         44   6.2    1
(AL928674) Zebrafish DNA sequence from clone CH211-10E2 in l...    44   6.2    1
(AL808141) Zebrafish DNA sequence from clone CH211-260N19.         44   6.2    1
(AL772274) Zebrafish DNA sequence from clone CH211-196D14 in...    44   6.2    1
(BV000197) S208P6579FH7.T0 129S1/SvImJ Mus musculus STS geno...    44   6.2    1
(AC125216) Mus musculus BAC clone RP23-109J14 from 1, comple...    44   6.2    1
(AC122027) Mus musculus BAC clone RP24-390L20 from 1, comple...    44   6.2    1
(AM467787) Vitis vinifera contig VV78X266807.6, whole genome...    44   6.2    1
(AM465759) Vitis vinifera contig VV78X134079.4, whole genome...    44   6.2    1
(AM463190) Vitis vinifera contig VV78X099380.6, whole genome...    44   6.2    1
(AM455294) Vitis vinifera contig VV78X237519.1, whole genome...    44   6.2    1
(AM432206) Vitis vinifera contig VV78X268607.4, whole genome...    44   6.2    1
(AM431048) Vitis vinifera contig VV78X194296.2, whole genome...    44   6.2    1
(AM427082) Vitis vinifera contig VV78X040019.3, whole genome...    44   6.2    1
(AF288125) Sorbaria sorbifolia matK (matK) gene, complete cd...    44   6.2    1
(AC190028) Glycine tomentella clone gtt1-77l4, complete sequ...    44   6.2    1
(CT476833) Pig DNA sequence from clone XX-BE151C22 on chromo...    44   6.2    1
(AC024753) Caenorhabditis elegans cosmid Y23H5B, complete se...    44   6.2    1
(AL589741) Human DNA sequence from clone RP11-372M18 on chro...    44   6.2    1
(AL133173) Human DNA sequence from clone RP11-453N3 on chrom...    44   6.2    1
(AC092810) Homo sapiens chromosome 1 clone RP11-385M4, compl...    44   6.2    1
(AC020760) Homo sapiens chromosome 16 clone RP11-151C19, com...    44   6.2    1
(AC016720) Homo sapiens BAC clone RP11-326G23 from 2, comple...    44   6.2    1
(AC157638) Dasypus novemcinctus clone VMRC5-378A18, WORKING ...    44   6.2    1
(AC153043) Bos taurus clone CH240-21G13, WORKING DRAFT SEQUE...    44   6.2    1
(AC149440) Otolemur garnettii clone CH256-248E21, WORKING DR...    44   6.2    1
(AC149006) Otolemur garnettii clone CH256-554C24, WORKING DR...    44   6.2    1
(AC146931) Sus scrofa clone RP44-197E3, WORKING DRAFT SEQUEN...    44   6.2    1
(AC143326) Homo sapiens chromosome 16 clone RP11-803J9, WORK...    44   6.2    1
(AC142380) Homo sapiens chromosome 16 clone RP11-1096F17, WO...    44   6.2    1
(AC142077) Homo sapiens chromosome 16 clone RP11-109B16, WOR...    44   6.2    1
(AC141318) Homo sapiens chromosome 16 clone RP11-96F8, WORKI...    44   6.2    1
(AC141291) Homo sapiens chromosome 16 clone RP11-464B16, WOR...    44   6.2    1
(AC139208) Mus musculus chromosome 12 clone RP23-142O12 map ...    44   6.2    1
(AC134142) Rattus norvegicus clone CH230-442P2, *** SEQUENCI...    44   6.2    1
(AC131138) Rattus norvegicus clone CH230-169F23, *** SEQUENC...    44   6.2    1
(AC128077) Rattus norvegicus clone CH230-368O3, WORKING DRAF...    44   6.2    1
(AC098815) Sus scrofa clone RP44-213D24, WORKING DRAFT SEQUE...    44   6.2    1
(AC097255) Rattus norvegicus clone CH230-152G23, WORKING DRA...    44   6.2    1
(FP236621) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(FP067452) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(FP017217) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(CU929359) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(CU640373) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(AC027737) Homo sapiens chromosome 4 clone RP11-323K3 map 4,...    44   6.2    1
(CU138522) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(CU137699) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CT025941) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CT009722) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   6.2    1
(CR854960) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(CR847937) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(BX510314) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(AP010012) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   6.2    1
(AL391066) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.2    1
(AC234361) Solanum lycopersicum chromosome 7 clone C07Hba001...    44   6.2    1
(AC219985) Bos taurus clone CH240-317C18, WORKING DRAFT SEQU...    44   6.2    1
(AC177038) Strongylocentrotus purpuratus clone R3-38L2, WORK...    44   6.2    1
(AC171477) Bos taurus clone CH240-263L20, WORKING DRAFT SEQU...    44   6.2    1
(AC165014) Bos taurus clone CH240-164E20, WORKING DRAFT SEQU...    44   6.2    1
(AC006903) Caenorhabditis elegans clone Y74C10, *** SEQUENCI...    44   6.2    1
(AC006751) Caenorhabditis elegans clone Y39G10, *** SEQUENCI...    44   6.2    1
(AC006727) Caenorhabditis elegans clone Y23H5, *** SEQUENCIN...    44   6.2    1
(AQ784606) HS_3248_A2_G04_T7C CIT Approved Human Genomic Spe...    44   6.2    1
(FH228030) CHO_OF3398xp11f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.2    1
(FH182852) CHO_OF3425xl20r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.2    1
(EK425825) 1095516019147 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EK248433) 1095460267508 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EK245294) 1095460250155 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EK162710) 1095458037282 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EK146621) 1095456024708 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EK140550) 1095454101039 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EK031411) 1092955410612 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EK023521) 1092955348596 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(AM607668) Entamoeba invadens IP1 GSS, clone inv082c08.q1k.        44   6.2    1
(EJ097187) 1095462221334 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.2    1
(ED321733) AUAC-aab78e07.b1 Ascaris suum whole genome shotgu...    44   6.2    1
(DX531710) GH_MBb0053F07f GH_MBb Gossypium hirsutum genomic ...    44   6.2    1
(DU435300) 1098415823106 CHORI-243 Ovis aries genomic clone ...    44   6.2    1
(DU347299) 1098313118759 CHORI-243 Ovis aries genomic clone ...    44   6.2    1
(DE400430) Bombyx mori genomic DNA, BAC clone:1H1G.                44   6.2    1
(CU979728) Brassica napus GSS, clone JBnB103K08, end read, p...    44   6.2    1
(CU845520) A BAC library has been constructed from PN40024 g...    44   6.2    1
(CT239265) Sus scrofa genomic clone CH242-151C22, genomic su...    44   6.2    1
(CL890736) abg05g07.x1 Soybean random, unfiltered genomic li...    44   6.2    1
(CL679098) PRI0125a_G09_2 - PRI0125a.BR (803) Mixed stage fo...    44   6.2    1
(CG979243) CH240_171B09.TV CHORI-240 Bos taurus genomic clon...    44   6.2    1
(CE565497) tigr-gss-dog-17000312709519 Dog Library Canis lup...    44   6.2    1
(BZ432111) BONNC49TR BO_1.6_2_KB_tot Brassica oleracea genom...    44   6.2    1
(BX199049) Danio rerio genomic clone DKEY-196D6, genomic sur...    44   6.2    1
(BX147938) Danio rerio genomic clone DKEY-109G14, genomic su...    44   6.2    1
(BX138574) Danio rerio genomic clone DKEY-88G21, genomic sur...    44   6.2    1
(EH677819) CCIL2823.b1_N09.ab1 CCI(LMS) chicory Cichorium in...    44   6.2    1
(DN807471) 73911358 Sea Urchin primary mesenchyme cell cDNA ...    44   6.2    1
(DB919567) Idiosepius paradoxus cDNA, clone:Ip_aB_035_I17, 5...    44   6.2    1
(CT567468) Rainbow trout liver SSH library from warm, cold a...    44   6.2    1
(CD662808) UCRHV18_03ah02_b1 Drought-stressed Dicktoo barley...    44   6.2    1
(BI326588) fp37c01.x3 zebrafish gridded kidney Danio rerio c...    44   6.2    1
(GE916378) Past_32_20453_B18.ab1_c Past_norm2007 Porites ast...    44   6.2    1
(GE915526) Past_29_20453_J06.ab1_c Past_norm2007 Porites ast...    44   6.2    1
(GE909877) 9557023_A22.ab1_c Past_norm2007 Porites astreoide...    44   6.2    1
(GE908355) 9551023_K16.ab1_c Past_norm2007 Porites astreoide...    44   6.2    1
(GE906470) 954423_20449_E08.ab1_c Past_norm2007 Porites astr...    44   6.2    1
(GE407675) 293798761 Nasonia vitripennis Female Pupae Nasoni...    44   6.2    1
(GE406003) 293795958 Nasonia vitripennis Female Pupae Nasoni...    44   6.2    1
(GE366554) 292294030 Nasonia vitripennis Male Pupae Nasonia ...    44   6.2    1
(EY336949) CAWY802.fwd CAWY Helobdella robusta Subtracted Ea...    44   6.2    1
(EY330101) CAWY3220.rev CAWY Helobdella robusta Subtracted E...    44   6.2    1
(EY328487) CAWY1619.fwd CAWY Helobdella robusta Subtracted E...    44   6.2    1
(EY267267) BF01041B1C04.f1 Normalized subtracted keck librar...    44   6.2    1
(EV207918) 0176625 Brassica napus Leaf - drought Brassica na...    44   6.2    1
(EV207640) 0176347 Brassica napus Leaf - drought Brassica na...    44   6.2    1
(ES641997) NVPPE55TR NVPP Nasonia vitripennis cDNA, mRNA seq...    44   6.2    1
(AX346447) Sequence 1518 from Patent WO0200928.                    34   6.6    3
(AX458577) Sequence 123 from Patent WO0246454.                     32   6.7    7
(CU639416) Zebrafish DNA sequence from clone CH211-191A10.         36   6.9    6
(AC009071) Homo sapiens chromosome 16 clone RP11-315K4, WORK...    34   7.0    8
(AC222191) Bos taurus clone CH240-411J1, WORKING DRAFT SEQUE...    32   7.1    8
(AC169984) Mus musculus BAC clone RP23-450I9 from chromosome...    42   7.1    4
(Z93065) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE...    38   7.2    2
(DQ851108) Bigelowiella natans plastid, complete genome.           34   7.2    4
(CU466949) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.3    5
(DY579902) A046-F3 Acropora millepora postsettlement library...    36   7.7    2
(AC114334) Canis lupus familiaris clone RP81-77C11, WORKING ...    36   7.8    5
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         30   7.8    9
(AC172770) Bos taurus clone CH240-266L1, WORKING DRAFT SEQUE...    38   8.0    2
(CT614213) Danio rerio EST, clone ZF_mu_64m16 3'.                  38   8.1    2
(BX470068) Zebrafish DNA sequence from clone CH211-219C8 in ...    40   8.1    5
(CT025915) Zebrafish DNA sequence from clone CH73-370O10 in ...    40   8.3    2
(AC178246) Strongylocentrotus purpuratus clone R3-3086H17, W...    38   8.3    6
(BX663613) Zebrafish DNA sequence from clone DKEY-74H3 in li...    36   8.5    5
(AX392733) Sequence 23 from Patent WO0212526.                      32   8.5    5
(AR707080) Sequence 23 from patent US 6933145.                     32   8.5    5
(GE725335) CBUH818.g1 B.anynana_wing.LCPP_2-10kb Bicyclus an...    32   8.6    3
(FB596757) Sequence 12480 from Patent WO2004081186.                34   8.7    7
(AJ235270) Rickettsia prowazekii strain Madrid E, complete g...    32   8.8    8
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    38   8.8    6
(CT573238) Zebrafish DNA sequence from clone CH211-63D14 in ...    36   8.8    3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   8.9    17
(EC824282) SME00007229 esmbsro2 Sawyeria marylandensis cDNA,...    32   8.9    3
(AX356494) Sequence 128 from Patent WO0181622.                     32   9.1    5
(AX347027) Sequence 2098 from Patent WO0200928.                    32   9.1    5
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    34   9.1    6
(GE681406) CBUA7126.g1 B.anynana_head_nosize Bicyclus anynan...    32   9.1    3
(CU462849) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    30   9.2    8
(BG928130) HNC65-1-B6.R.R HNC (Human Normal Cartilage) Homo ...    36   9.4    2
(AC006844) Caenorhabditis elegans clone Y108G3Y, *** SEQUENC...    36   9.4    7
(AP002857) Homo sapiens genomic DNA, chromosome 4q16-q20, cl...    34   9.5    4
(BZ932758) CH240_87L13.TV CHORI-240 Bos taurus genomic clone...    38   9.5    2
(BW636803) Dugesia ryukyuensis mRNA, clone: Dr_sW_006_J05, 5...    40   9.6    2
(AC169148) Sorex araneus clone SA_Ba-276M20, WORKING DRAFT S...    34   9.7    3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   9.7    7
(CP001205) Borrelia burgdorferi ZS7, complete genome.              36   9.7    13
(AE017308) Mycoplasma mobile 163K complete genome.                 32   9.8    10
(FP089700) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   9.8    4
(FP015943) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   10.0   4

>(AU037666) Dictyostelium discoideum slug cDNA, clone SSE152.
          Length = 616

 Score =  961 bits (485), Expect(2) = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Plus


Query: 95  cgataccaataccaataatagtattaagagatcgccacctcaacttataatggtttgtaa 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  cgataccaataccaataatagtattaagagatcgccacctcaacttataatggtttgtaa 154


Query: 155 agaagtttttaaaaatacaatacaagatgtttcatggtgtcctgatggtttatcattttt 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 agaagtttttaaaaatacaatacaagatgtttcatggtgtcctgatggtttatcattttt 214


Query: 215 tgtttgttcaattgatggaactattgcctatatatcattgaaactacatgaaattagtga 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgtttgttcaattgatggaactattgcctatatatcattgaaactacatgaaattagtga 274


Query: 275 tggatcacttcaacctatcagtcatagagaaaaacaacaattctttaaaaaatcttataa 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tggatcacttcaacctatcagtcatagagaaaaacaacaattctttaaaaaatcttataa 334


Query: 335 ttttaatttaccaaatgaaatagaactatttattcataaaagaaatcaaataccaactaa 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttttaatttaccaaatgaaatagaactatttattcataaaagaaatcaaataccaactaa 394


Query: 395 accaatcactagaactacccaagaagtactatntactcaaaaacagtcaacaactttaac 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 accaatcactagaactacccaagaagtactatntactcaaaaacagtcaacaactttaac 454


Query: 455 tggaaagaaaagaataacaccagttacaactacatattaaaaattcttctatttttgtgg 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggaaagaaaagaataacaccagttacaactacatattaaaaattcttctatttttgtgg 514


Query: 515 atttaaataaacatggatttagattataattataaattgttggggaactgtaaaataact 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atttaaataaacatggatttagattataattataaattgttggggaactgtaaaataact 574


Query: 575 cttttatt 582
           ||||||||
Sbjct: 575 cttttatt 582

 Score =  137 bits (69), Expect(2) = 0.0
 Identities = 69/69 (100%)
 Strand = Plus / Plus


Query: 1  caaataattatttttcattaattttattaggaagtgttgattcaacattctcattatggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaataattatttttcattaattttattaggaagtgttgattcaacattctcattatggt 60


Query: 61 tatcaccac 69
          |||||||||
Sbjct: 61 tatcaccac 69

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 929,691,284
Number of extensions: 67650725
Number of successful extensions: 6353738
Number of sequences better than 10.0: 334
Length of query: 615
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 592
Effective length of database: 99,442,330,388
Effective search space: 58869859589696
Effective search space used: 58869859589696
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01659-1 (Contig-U01659-1Q) /CSM_Contig/Contig-U01659-1Q.Seq.d
         (615 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86HX1) RecName: Full=Protein HIRA;  &AC114263_7(AC114263|pid:n...    82   1e-14
(O42611) RecName: Full=Protein HIRA; AltName: Full=TUP1-like enh...    58   2e-07
X99375_1(X99375|pid:none) G.gallus mRNA for Chira protein.             57   3e-07
(Q8QFR2) RecName: Full=Protein HIRA;  &BC078007_1(BC078007|pid:n...    55   2e-06
AJ278387_1(AJ278387|pid:none) Xenopus laevis partial mRNA for HI...    55   2e-06
S45345(S45345) TUP1-like enhancer - mouse  &X75295_1(X75295|pid:...    54   3e-06
X99712_1(X99712|pid:none) M.musculus mRNA for HIRA protein.            54   3e-06
AK299950_1(AK299950|pid:none) Homo sapiens cDNA FLJ58422 complet...    54   4e-06
S45344(S45344) TUP1 like enhancer - human  &X75296_1(X75296|pid:...    54   4e-06
(P54198) RecName: Full=Protein HIRA; AltName: Full=TUP1-like enh...    54   4e-06
BC052856_1(BC052856|pid:none) Mus musculus histone cell cycle re...    54   4e-06
AK289809_1(AK289809|pid:none) Homo sapiens cDNA FLJ78369 complet...    54   4e-06
BC032721_1(BC032721|pid:none) Homo sapiens HIR histone cell cycl...    54   4e-06
AB384712_1(AB384712|pid:none) Synthetic construct DNA, clone: pF...    54   4e-06
I37465(I37465;I37464;S58177) HIRA protein - human  &X81844_1(X81...    54   4e-06
X77633_1(X77633|pid:none) H.sapiens HIRA mRNA.                         54   4e-06
CR774200_6(CR774200|pid:none) Zebrafish DNA sequence from clone ...    52   1e-05
DQ340808_1(DQ340808|pid:none) Carassius auratus HIRA mRNA, compl...    52   1e-05
DQ340807_1(DQ340807|pid:none) Carassius auratus gibelio HIRA mRN...    52   1e-05
BT016167_1(BT016167|pid:none) Drosophila melanogaster AT04626 fu...    49   9e-05
(Q4P4R3) RecName: Full=Protein HIR1;                                   49   9e-05
A59246(A59246;JE0283) HIRA protein - fruit fly (Drosophila melan...    49   1e-04
AJ278386_1(AJ278386|pid:none) Xenopus laevis partial mRNA for HI...    47   4e-04
(Q32SG6) RecName: Full=Protein HIRA; AltName: Full=Histone regul...    46   7e-04
AF031081_1(AF031081|pid:none) Drosophila melanogaster HIRA homol...    45   0.001
(Q5ACW8) RecName: Full=Protein HIR1;                                   44   0.003
FM992689_29(FM992689|pid:none) Candida dubliniensis CD36 chromos...    43   0.008
CU633895_330(CU633895|pid:none) Podospora anserina genomic DNA c...    43   0.008
CP001323_449(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    42   0.018
FN357713_5(FN357713|pid:none) Schistosoma mansoni genome sequenc...    41   0.031
AY069414_1(AY069414|pid:none) Drosophila melanogaster LD11036 fu...    40   0.040
AF071881_1(AF071881|pid:none) Drosophila melanogaster Hira isofo...    40   0.040
(Q4WTC4) RecName: Full=Protein hir1;                                   40   0.053
(Q1DHE1) RecName: Full=Protein HIR1;                                   40   0.053
(Q6BYU4) RecName: Full=Protein HIR1;  &CR382133_279(CR382133|pid...    39   0.12
(Q0CQ54) RecName: Full=Protein hir1;                                   39   0.15
FN392321_212(FN392321|pid:none) Pichia pastoris GS115 chromosome...    39   0.15
(P32479) RecName: Full=Protein HIR1; AltName: Full=Histone trans...    38   0.20
CP000496_65(CP000496|pid:none) Pichia stipitis CBS 6054 chromoso...    38   0.26
(Q5BDU4) RecName: Full=Protein hir1;                                   38   0.26
AM270160_21(AM270160|pid:none) Aspergillus niger contig An08c005...    38   0.26
(Q2UBU2) RecName: Full=Protein HIR1;  &AP007161_725(AP007161|pid...    37   0.45
(Q6CXX3) RecName: Full=Protein HIR1;  &CR382121_203(CR382121|pid...    36   0.99
CP000882_68(CP000882|pid:none) Hemiselmis andersenii chromosome ...    35   1.7
AJ222584_2(AJ222584|pid:none) Euglena viridis chloroplast partia...    34   2.9
AE017341_687(AE017341|pid:none) Cryptococcus neoformans var. neo...    34   2.9
BX897678_12(BX897678|pid:none) Neurospora crassa DNA linkage gro...    34   3.8
AM270075_8(AM270075|pid:none) Aspergillus niger contig An04c0140...    34   3.8
CU928169_320(CU928169|pid:none) Kluyveromyces thermotolerans str...    33   4.9
(Q74ZN0) RecName: Full=Protein HIR1;  &AE016820_537(AE016820|pid...    33   4.9
AP001550_13(AP001550|pid:none) Oryza sativa Japonica Group genom...    33   8.4
(Q0UNC6) RecName: Full=Protein HIR1;                                   33   8.4

>(Q86HX1) RecName: Full=Protein HIRA;
           &AC114263_7(AC114263|pid:none)
          Length = 1114

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 48/107 (44%), Positives = 54/107 (50%)
 Frame = +3

Query: 12  FSLILLGSVDSTFSLWLSPPXXXXXXXXXXXXXXSIKRSPPQLIMVCKEVFKNTIQDVSW 191
           F LILLG  DST SLW S                    S P+ +MV + +F   IQD+SW
Sbjct: 279 FCLILLGGQDSTLSLWSS--------------------SSPRSLMVTRSLFDQCIQDISW 318

Query: 192 CPDGLSFFVCSIDGTIAYISLKLHEISDGSLQPISHREKQQFFKKSY 332
           C DG SF  CS DGT+ YISL   EI      PI   EKQ FFK  Y
Sbjct: 319 CSDGYSFVACSTDGTVGYISLDPEEIGG---SPIGPEEKQIFFKNYY 362

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 756,000,694
Number of extensions: 12387503
Number of successful extensions: 32778
Number of sequences better than 10.0: 52
Number of HSP's gapped: 32733
Number of HSP's successfully gapped: 52
Length of query: 205
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 82
Effective length of database: 653,084,107
Effective search space: 53552896774
Effective search space used: 53552896774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.93  gvh: 0.70  alm: 0.36  top: 0.40  tms: 0.00  mit: 0.34  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for Contig-U01659-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0