| Contig-U10379-1 |
| Contig ID |
Contig-U10379-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1607 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
352990 |
| End point |
351396 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
8 |
| Number of EST |
15 |
| Link to clone list |
U10379 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.19 |
| Homology vs DNA |
Query= Contig-U10379-1 (Contig-U10379-1Q) /CSM_Contig/Contig-U10379-1Q.Seq.d
(1607 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ417018) Dictyostelium discoideum cDNA clone:ddv29k03, 5' ... 1065 0.0 2
(BJ411983) Dictyostelium discoideum cDNA clone:ddv6e18, 5' e... 1039 0.0 2
(BJ435334) Dictyostelium discoideum cDNA clone:ddv26f22, 3' ... 1027 0.0 1
(BJ414697) Dictyostelium discoideum cDNA clone:ddv20k06, 5' ... 1017 0.0 2
(BJ432884) Dictyostelium discoideum cDNA clone:ddv20k06, 3' ... 973 0.0 3
(BJ430718) Dictyostelium discoideum cDNA clone:ddv8o09, 3' e... 910 0.0 3
(BJ430505) Dictyostelium discoideum cDNA clone:ddv7b13, 3' e... 910 0.0 3
(BJ431420) Dictyostelium discoideum cDNA clone:ddv14i06, 3' ... 902 0.0 3
(BJ416561) Dictyostelium discoideum cDNA clone:ddv26f22, 5' ... 848 0.0 3
(BJ414216) Dictyostelium discoideum cDNA clone:ddv18n07, 5' ... 833 0.0 2
(BJ412435) Dictyostelium discoideum cDNA clone:ddv8o09, 5' e... 833 0.0 2
(BJ413081) Dictyostelium discoideum cDNA clone:ddv14i06, 5' ... 831 0.0 2
(BJ412236) Dictyostelium discoideum cDNA clone:ddv7b13, 5' e... 831 0.0 2
(BJ435958) Dictyostelium discoideum cDNA clone:ddv29k03, 3' ... 844 0.0 2
(BJ432346) Dictyostelium discoideum cDNA clone:ddv18n07, 3' ... 490 e-134 1
(BJ430238) Dictyostelium discoideum cDNA clone:ddv6e18, 3' e... 192 3e-44 1
(CD792213) EST663574 RAB Rhipicephalus appendiculatus cDNA c... 64 2e-05 1
(CK415089) AUF_IpPit_31_l08 Pituitary cDNA library Ictalurus... 58 0.001 1
(DR724296) AGENCOURT_54837717 NICHD_XGC_Emb10 Xenopus laevis... 42 0.026 2
(EJ081506) 1095460038998 Global-Ocean-Sampling_GS-26-01-01-1... 40 0.053 2
(FC690544) CAXX21362.fwd CAXX Lottia gigantea from male gona... 44 0.065 2
(FC583391) CAXP1984.fwd CAXP Lottia gigantea from head, foot... 44 0.10 2
(FC789788) CBGC19925.fwd CBGC Lottia gigantea 15h 18h embryo... 44 0.10 2
(BX950198) Zebrafish DNA sequence from clone CH211-214G3 in ... 40 0.13 5
(CU607020) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.15 8
(AC006706) Caenorhabditis elegans clone Y110A2, *** SEQUENCI... 40 0.31 5
(CN776728) taf25e11.y1 Hydra EST Darmstadt I Hydra magnipapi... 38 0.35 3
(AC149482) Populus trichocarpa clone Pop1-69G3, complete seq... 38 0.37 8
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.40 4
(AC221872) Bos taurus clone CH240-380H1, WORKING DRAFT SEQUE... 42 0.65 5
(AC137838) Medicago truncatula clone mth2-34l12, complete se... 40 0.75 6
(CR936217) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.85 7
(AF361947) Dictyostelium discoideum SgcA (sgcA) mRNA, comple... 46 0.92 2
(ET680652) CHO_OF344xg22f1.ab1 CHO_OF Nicotiana tabacum geno... 40 0.92 2
(AC008123) Homo sapiens 2q35 BAC RPCI11-1064L18 (Roswell Par... 42 0.98 2
(CR339052) Zebrafish DNA sequence from clone CH211-218E6 in ... 38 1.0 5
(BS000123) Pan troglodytes chromosome 22 clone:PTB-109N23, m... 48 1.0 1
(AY258453) Podovirus SOG clone SOG-W-S DNA polymerase gene, ... 48 1.0 1
(D87676) Homo sapiens genomic DNA, Down syndrome region. 48 1.0 1
(AP001729) Homo sapiens genomic DNA, chromosome 21q, section... 48 1.0 1
(AP001414) Homo sapiens genomic DNA, chromosome 21q22.2, clo... 48 1.0 1
(AP000155) Homo sapiens genomic DNA, chromosome 21q22.2, DSC... 48 1.0 1
(AP000013) Homo sapiens genomic DNA of 21q22.2 Down Syndrome... 48 1.0 1
(EL601164) He_pwd_0165F06_M13R Heliconius erato pooled wing ... 48 1.0 1
(CN055480) Salamander_20_H20.ab1 AG Ambystoma tigrinum tigri... 48 1.0 1
(BY931693) Bombyx mori cDNA, clone:E_EL_ovS0_26H02_R_0, 3' e... 48 1.0 1
(FE787750) CCAG15714.g1 CCAG Petrolisthes cinctipes heart, g... 40 1.2 2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 40 1.5 3
(AC146930) Bos taurus clone RP42-343B6, WORKING DRAFT SEQUEN... 36 1.7 7
(AC158037) Bos taurus clone CH240-115H17, WORKING DRAFT SEQU... 34 2.0 2
(BX890591) Zebrafish DNA sequence from clone DKEY-184J23 in ... 34 2.1 2
(CR847882) Zebrafish DNA sequence from clone RP71-18L21 in l... 34 2.1 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 36 2.8 4
(CB939325) IpCGJx13_45_H05_23 IpCGJx13 Ictalurus punctatus c... 32 2.8 2
(CU861466) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.8 6
(CZ421127) 1016830 RP42 Bos taurus genomic clone RP42-43O14,... 34 2.8 2
(AC127268) Mus musculus BAC clone RP23-426K20 from chromosom... 42 3.0 7
(AC198065) Lottia scutum clone JGIAZYH-5B5, complete sequence. 44 3.2 4
(AC168294) Bos taurus clone CH240-233K14, WORKING DRAFT SEQU... 34 3.3 9
(AF079445) Dictyostelium discoideum TipC (tipC) gene, comple... 34 3.3 4
(EA427656) Sequence 170 from patent US 7332281. 46 3.6 3
(DL007675) NOVEL THERAPEUTIC TARGETS IN CANCER. 46 3.6 3
(CU469001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.7 5
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 46 4.1 1
(AC144556) Homo sapiens BAC clone RP13-884E18 from 4, comple... 46 4.1 1
(AC207850) Nomascus leucogenys leucogenys clone CH271-394D19... 46 4.1 1
(DH322574) Oryzias latipes Fosmid clone:GOLWFno680_f03, forw... 46 4.1 1
(CC948023) BOIFH49TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 46 4.1 1
(CD792212) EST663573 RAB Rhipicephalus appendiculatus cDNA c... 46 4.1 1
(FE794787) CCAG19801.g1 CCAG Petrolisthes cinctipes heart, g... 46 4.1 1
(BX640506) Zebrafish DNA sequence from clone DKEY-271E14 in ... 40 4.2 7
(EL505121) F04_1951_302.AB1 Blood stage Plasmodium falciparu... 32 4.3 3
(DY748167) 186338 Pigtailed macaque testis library Macaca ne... 38 4.6 2
(EE282815) SAAH-aab13b09.g1 Agen 0058 Schmidtea mediterranea... 34 4.6 3
(AC092957) Homo sapiens 3 BAC RP11-635I10 (Roswell Park Canc... 32 4.7 11
(BX571715) Zebrafish DNA sequence from clone DKEY-6E3 in lin... 44 4.7 3
(AY159039) Dictyostelium discoideum LvsC (lvsC) gene, comple... 36 4.7 4
(CC770636) CH240_5L19.TV CHORI-240 Bos taurus genomic clone ... 36 4.9 2
(CN448782) GUO_cDNA_19_70 Flower bud cDNA library from Lycor... 44 4.9 2
(AC170749) Mus musculus chromosome 1, clone RP23-322G4, comp... 40 5.5 7
(AG908847) Oryza sativa Indica Group genomic DNA, BAC end se... 40 5.5 2
(EJ121350) 1092343374485 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.9 2
(EJ299053) 1095388066093 Global-Ocean-Sampling_GS-27-01-01-1... 40 6.1 2
(AE006423) Lactococcus lactis subsp. lactis IL1403 section 1... 38 6.1 4
(EK340739) 1095467060466 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.4 2
(AC215421) Solanum lycopersicum chromosome 2 clone C02HBa020... 38 6.6 7
(AC002038) Homo sapiens chromosome 2 clone 101B6 map 2p11, c... 40 6.8 5
(AC176231) Strongylocentrotus purpuratus clone R3-3063B4, WO... 34 6.9 6
(AC173826) Bos taurus clone CH240-90A7, WORKING DRAFT SEQUEN... 40 6.9 6
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 7.2 3
(AC164806) Bos taurus clone CH240-157A22, *** SEQUENCING IN ... 32 7.5 2
(AM466109) Vitis vinifera contig VV78X143357.6, whole genome... 44 7.5 2
(AC198113) Zea mays chromosome unknown clone ZMMBBb-317D18; ... 32 7.7 2
(AC191619) Zea mays chromosome unknown clone CH201-344D16; Z... 32 7.7 2
(AC179194) Strongylocentrotus purpuratus clone R3-4019E7, WO... 34 7.8 5
(AC006380) Homo sapiens BAC clone RP11-463M14 from 7q15.1-p1... 38 8.3 5
(AC200435) Pongo abelii chromosome 21 clone CH276-382K11, WO... 40 8.4 3
(AC186993) Canis familiaris chromosome 26, clone XX-367D6, c... 38 9.0 7
(CU463818) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 9.0 7
(BX936395) Zebrafish DNA sequence from clone DKEY-152H20 in ... 36 9.1 4
>(BJ417018) Dictyostelium discoideum cDNA clone:ddv29k03, 5' end,
single read.
Length = 603
Score = 1065 bits (537), Expect(2) = 0.0
Identities = 537/537 (100%)
Strand = Plus / Plus
Query: 527 tttaaatccagaaggtagagcttatccatcattagtttggaaacattataaagaaggttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttaaatccagaaggtagagcttatccatcattagtttggaaacattataaagaaggttg 60
Query: 587 ttcagttagattattaaatccacaaacatttaattcaaatgtttggaaattatgtagtac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcagttagattattaaatccacaaacatttaattcaaatgtttggaaattatgtagtac 120
Query: 647 attacaaactcattttcaatgtggagttggtgcaaatatttatttaacaccagcaggagc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attacaaactcattttcaatgtggagttggtgcaaatatttatttaacaccagcaggagc 180
Query: 707 acaaggatttgcaccacattatgatgatgttgatgtatttattcttcaattggagggtaa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acaaggatttgcaccacattatgatgatgttgatgtatttattcttcaattggagggtaa 240
Query: 767 aaaagaatggagattatataaaccaagagatgcaaatgaagttttaccaaagaaatcaag 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaagaatggagattatataaaccaagagatgcaaatgaagttttaccaaagaaatcaag 300
Query: 827 tgaaaatttcacacaagaagagattggtgaaccatatttcacagtgactttagaggcagg 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaaaatttcacacaagaagagattggtgaaccatatttcacagtgactttagaggcagg 360
Query: 887 tgatttattatactttccaagaggtgtgattcatcaagctgtatcaccatcggatgtaca 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgatttattatactttccaagaggtgtgattcatcaagctgtatcaccatcggatgtaca 420
Query: 947 ttcacttcatatcacagtttcaacttatttaaataatacatggggtgatttaattggaaa 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcacttcatatcacagtttcaacttatttaaataatacatggggtgatttaattggaaa 480
Query: 1007 ggttttgaatagagcattggagattgcaaatgaggaatgcttagagtttagagaagg 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggttttgaatagagcattggagattgcaaatgaggaatgcttagagtttagagaagg 537
Score = 135 bits (68), Expect(2) = 0.0
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1063 ggtttaccaagagattatactcaatacttgggtgtgattcatagtgataaagttggtgat 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggtttaccaagagattatactcaatacttgggtgtgattcatagtgataaagttggtgat 595
Query: 1123 gagagaag 1130
||||||||
Sbjct: 596 gagagaag 603
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,899,349,778
Number of extensions: 125368969
Number of successful extensions: 13622009
Number of sequences better than 10.0: 108
Length of query: 1607
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1583
Effective length of database: 97,308,875,965
Effective search space: 154039950652595
Effective search space used: 154039950652595
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.27 |
| Homology vs Protein |
Query= Contig-U10379-1 (Contig-U10379-1Q) /CSM_Contig/Contig-U10379-1Q.Seq.d
(1607 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54K96) RecName: Full=JmjC domain-containing protein G; 616 e-175
BC134172_1(BC134172|pid:none) Danio rerio zgc:162967, mRNA (cDNA... 269 4e-94
AJ719363_1(AJ719363|pid:none) Gallus gallus mRNA for hypothetica... 269 2e-70
(Q9H6W3) RecName: Full=Nucleolar protein 66; Short=hsNO... 256 2e-66
(Q9JJF3) RecName: Full=Nucleolar protein 66; &AB041553_1(AB0415... 255 3e-66
BC142386_1(BC142386|pid:none) Bos taurus chromosome 14 open read... 253 1e-65
AK299994_1(AK299994|pid:none) Homo sapiens cDNA FLJ51298 complet... 248 4e-64
CP001332_298(CP001332|pid:none) Micromonas sp. RCC299 chromosome... 210 7e-62
T15138(T15138)hypothetical protein T28F2.4 - Caenorhabditis eleg... 228 4e-58
AF000198_2(AF000198|pid:none) Caenorhabditis elegans cosmid T28F... 228 4e-58
CP000586_357(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 179 3e-43
AK027299_1(AK027299|pid:none) Homo sapiens cDNA FLJ14393 fis, cl... 173 3e-43
(Q8IUF8) RecName: Full=MYC-induced nuclear antigen; AltName: Ful... 172 3e-43
AB083190_1(AB083190|pid:none) Homo sapiens mRNA for Mina53 form-... 172 6e-43
CR627479_1(CR627479|pid:none) Homo sapiens mRNA; cDNA DKFZp762O1... 169 8e-42
(Q8CFC1) RecName: Full=Myc-induced nuclear antigen; &AB083195_1... 174 8e-42
BC023462_1(BC023462|pid:none) Mus musculus myc induced nuclear a... 172 3e-41
(Q8CD15) RecName: Full=Myc-induced nuclear antigen; &AB177385_1... 172 3e-41
AJ720509_1(AJ720509|pid:none) Gallus gallus mRNA for hypothetica... 167 1e-39
CT005268_24(CT005268|pid:none) Leishmania major strain Friedlin,... 157 8e-37
AB083191_1(AB083191|pid:none) Homo sapiens mRNA for Mina53 form-... 157 1e-36
AM502249_24(AM502249|pid:none) Leishmania infantum chromosome 31. 155 5e-36
AM494968_35(AM494968|pid:none) Leishmania braziliensis chromosom... 154 1e-35
BC053125_1(BC053125|pid:none) Danio rerio MYC induced nuclear an... 143 2e-32
CP000828_1843(CP000828|pid:none) Acaryochloris marina MBIC11017,... 125 6e-27
CP000449_2424(CP000449|pid:none) Maricaulis maris MCS10, complet... 107 9e-22
CU459003_3429(CU459003|pid:none) Magnetospirillum gryphiswaldens... 92 4e-17
CP000750_1335(CP000750|pid:none) Kineococcus radiotolerans SRS30... 85 7e-15
CP000100_373(CP000100|pid:none) Synechococcus elongatus PCC 7942... 84 1e-14
CP000393_2653(CP000393|pid:none) Trichodesmium erythraeum IMS101... 84 1e-14
CP000850_2224(CP000850|pid:none) Salinispora arenicola CNS-205, ... 84 2e-14
CP000474_360(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 82 6e-14
AJ937740_212(AJ937740|pid:none) Streptomyces ambofaciens ATCC 23... 80 2e-13
AY211023_19(AY211023|pid:none) Streptomyces violaceoruber strain... 80 2e-13
CP000667_2117(CP000667|pid:none) Salinispora tropica CNB-440, co... 80 2e-13
EU953450_1(EU953450|pid:none) Zea mays clone 1412964 unknown mRNA. 78 1e-12
BX571861_242(BX571861|pid:none) Photorhabdus luminescens subsp. ... 75 7e-12
FN357845_8(FN357845|pid:none) Schistosoma mansoni genome sequenc... 75 9e-12
CP000926_3150(CP000926|pid:none) Pseudomonas putida GB-1, comple... 74 2e-11
CP000384_5229(CP000384|pid:none) Mycobacterium sp. MCS, complete... 74 2e-11
CT971583_559(CT971583|pid:none) Synechococcus WH7803 complete ge... 73 3e-11
CP000656_335(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, co... 70 2e-10
CP000479_3240(CP000479|pid:none) Mycobacterium avium 104, comple... 70 3e-10
AE016958_1145(AE016958|pid:none) Mycobacterium avium subsp. para... 69 5e-10
AM479352_4(AM479352|pid:none) Vitis vinifera contig VV79X001573.... 67 2e-09
CR855224_12(CR855224|pid:none) Oryza sativa genomic DNA, chromos... 66 3e-09
CP000075_1459(CP000075|pid:none) Pseudomonas syringae pv. syring... 64 2e-08
AP008231_1140(AP008231|pid:none) Synechococcus elongatus PCC 630... 60 3e-07
AM421808_415(AM421808|pid:none) Neisseria meningitidis serogroup... 60 3e-07
DQ149023_45(DQ149023|pid:none) Synechococcus cyanophage syn9, co... 59 4e-07
AM747720_2160(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 58 9e-07
CP000958_2090(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 58 9e-07
CP000086_1880(CP000086|pid:none) Burkholderia thailandensis E264... 58 9e-07
CP001408_2702(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 58 1e-06
CP000526_2133(CP000526|pid:none) Burkholderia mallei SAVP1 chrom... 58 1e-06
BX571965_2274(BX571965|pid:none) Burkholderia pseudomallei strai... 58 1e-06
CP000570_2533(CP000570|pid:none) Burkholderia pseudomallei 668 c... 58 1e-06
CP000572_2583(CP000572|pid:none) Burkholderia pseudomallei 1106a... 58 1e-06
CP000512_1305(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 57 1e-06
CP000614_2145(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 57 1e-06
AE002098_1708(AE002098|pid:none) Neisseria meningitidis MC58, co... 57 1e-06
AX024070_1(AX024070|pid:none) Sequence 13 from Patent FR2785293.... 57 1e-06
CP001013_2631(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 57 1e-06
CP001052_2465(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 57 2e-06
CP001392_909(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 57 2e-06
CP000270_2803(CP000270|pid:none) Burkholderia xenovorans LB400 c... 56 3e-06
CP000606_1551(CP000606|pid:none) Shewanella loihica PV-4, comple... 55 6e-06
CP001050_167(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945,... 55 6e-06
CP000151_2208(CP000151|pid:none) Burkholderia sp. 383 chromosome... 55 7e-06
CP000103_1137(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 55 9e-06
CP000961_2683(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 54 1e-05
CP001503_2303(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 54 1e-05
FM954972_971(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 54 1e-05
AM902716_3483(AM902716|pid:none) Bordetella petrii strain DSM 12... 54 1e-05
CR954246_1652(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 54 2e-05
CP001103_2349(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 53 4e-05
CP001157_2743(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 53 4e-05
CP001616_1514(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 52 6e-05
CP000302_1812(CP000302|pid:none) Shewanella denitrificans OS217,... 52 6e-05
AE016853_3285(AE016853|pid:none) Pseudomonas syringae pv. tomato... 52 6e-05
BX842656_97(BX842656|pid:none) Bdellovibrio bacteriovorus comple... 51 1e-04
CP000058_2963(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 51 1e-04
CR378666_197(CR378666|pid:none) Photobacterium profundum SS9; se... 51 1e-04
BX640415_241(BX640415|pid:none) Bordetella pertussis strain Toha... 51 1e-04
CP000446_1595(CP000446|pid:none) Shewanella sp. MR-4, complete g... 51 1e-04
BX640429_309(BX640429|pid:none) Bordetella parapertussis strain ... 51 1e-04
CP000352_1072(CP000352|pid:none) Ralstonia metallidurans CH34, c... 51 1e-04
CP000090_1104(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 51 1e-04
CP000469_1732(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 51 1e-04
CP001139_1637(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 51 1e-04
CR382132_1167(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 50 2e-04
CP000949_3399(CP000949|pid:none) Pseudomonas putida W619, comple... 50 2e-04
CP000589_99(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ... 50 2e-04
CP000510_930(CP000510|pid:none) Psychromonas ingrahamii 37, comp... 50 2e-04
AE016825_3581(AE016825|pid:none) Chromobacterium violaceum ATCC ... 50 2e-04
FP236842_2096(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 50 2e-04
CP000267_2598(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 50 3e-04
CT573326_2021(CT573326|pid:none) Pseudomonas entomophila str. L4... 50 3e-04
CP000447_2246(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 50 3e-04
FM178379_1952(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 49 4e-04
CU633749_1158(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 49 4e-04
CP000563_2437(CP000563|pid:none) Shewanella baltica OS155, compl... 49 4e-04
CP000472_1773(CP000472|pid:none) Shewanella piezotolerans WP3, c... 49 4e-04
CP000681_2221(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 49 4e-04
CP000891_2580(CP000891|pid:none) Shewanella baltica OS195, compl... 49 7e-04
(P44683) RecName: Full=Uncharacterized protein HI0396; &A64151(... 48 9e-04
CP000542_2608(CP000542|pid:none) Verminephrobacter eiseniae EF01... 48 9e-04
AE017143_1641(AE017143|pid:none) Haemophilus ducreyi strain 3500... 48 9e-04
CP000785_110(CP000785|pid:none) Enterobacter sakazakii ATCC BAA-... 48 9e-04
CP000269_1286(CP000269|pid:none) Janthinobacterium sp. Marseille... 48 9e-04
CP001154_2616(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 48 0.001
AE014299_2577(AE014299|pid:none) Shewanella oneidensis MR-1, com... 48 0.001
CP000082_1247(CP000082|pid:none) Psychrobacter arcticus 273-4, c... 48 0.001
CP001321_1345(CP001321|pid:none) Haemophilus parasuis SH0165, co... 48 0.001
CP000159_749(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 48 0.001
CP000863_1587(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 47 0.002
CP000472_2570(CP000472|pid:none) Shewanella piezotolerans WP3, c... 47 0.002
CU207211_2047(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 47 0.002
AE015451_3977(AE015451|pid:none) Pseudomonas putida KT2440 compl... 47 0.002
AM286690_1272(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 47 0.002
CU928158_1731(CU928158|pid:none) Escherichia fergusonii ATCC 354... 47 0.002
CP000323_1141(CP000323|pid:none) Psychrobacter cryohalolentis K5... 47 0.002
CP000569_1766(CP000569|pid:none) Actinobacillus pleuropneumoniae... 47 0.002
CU468135_1972(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 47 0.003
AM942759_872(AM942759|pid:none) Proteus mirabilis strain HI4320,... 47 0.003
(A2RUC4) RecName: Full=JmjC domain-containing protein C2orf60; ... 46 0.003
CP000304_2258(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 46 0.003
AE006468_1194(AE006468|pid:none) Salmonella enterica subsp. ente... 46 0.003
CP000503_2075(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 46 0.004
BC132289_1(BC132289|pid:none) Mus musculus RIKEN cDNA 1110034B05... 46 0.004
CP000720_1579(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 46 0.004
AC0199(AC0199) conserved hypothetical protein YPO1632 [imported]... 46 0.004
CP000744_2545(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 46 0.004
AE009952_1764(AE009952|pid:none) Yersinia pestis KIM, complete g... 46 0.004
(A2RSX7) RecName: Full=JmjC domain-containing protein C2orf60 ho... 46 0.004
CP000821_2404(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 46 0.004
CP000934_2431(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 45 0.006
CP000675_1987(CP000675|pid:none) Legionella pneumophila str. Cor... 45 0.006
CP000653_1630(CP000653|pid:none) Enterobacter sp. 638, complete ... 45 0.006
AE017354_1863(AE017354|pid:none) Legionella pneumophila subsp. p... 45 0.006
CP000826_2004(CP000826|pid:none) Serratia proteamaculans 568, co... 45 0.006
CR628337_1874(CR628337|pid:none) Legionella pneumophila str. Len... 45 0.006
AE017340_1309(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 45 0.008
CP000964_3355(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 45 0.008
AE017220_1180(AE017220|pid:none) Salmonella enterica subsp. ente... 45 0.008
CP000653_489(CP000653|pid:none) Enterobacter sp. 638, complete g... 45 0.008
AE005674_1130(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 45 0.008
AM933172_1810(AM933172|pid:none) Salmonella enterica subsp. ente... 45 0.008
CP000647_1106(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 45 0.008
AP006725_1919(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 45 0.008
AE014613_1582(AE014613|pid:none) Salmonella enterica subsp. ente... 45 0.008
CP001164_1420(CP001164|pid:none) Escherichia coli O157:H7 str. E... 45 0.008
CP000468_1018(CP000468|pid:none) Escherichia coli APEC O1, compl... 45 0.008
CP001339_1826(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 45 0.008
CP000826_500(CP000826|pid:none) Serratia proteamaculans 568, com... 45 0.008
CP001127_1227(CP001127|pid:none) Salmonella enterica subsp. ente... 45 0.008
(P27431) RecName: Full=Uncharacterized protein ycfD; &AP009048_... 45 0.008
CP001172_1896(CP001172|pid:none) Acinetobacter baumannii AB307-0... 45 0.010
CP000266_1066(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 45 0.010
CU928162_1246(CU928162|pid:none) Escherichia coli ED1a chromosom... 45 0.010
CP000247_1108(CP000247|pid:none) Escherichia coli 536, complete ... 45 0.010
AB083192_1(AB083192|pid:none) Homo sapiens mRNA for Mina53, part... 45 0.010
CU468230_1627(CU468230|pid:none) Acinetobacter baumannii str. SD... 45 0.010
CP001141_63(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10... 45 0.010
CP000783_2158(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 44 0.013
CR543861_1773(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 44 0.013
BX571868_140(BX571868|pid:none) Photorhabdus luminescens subsp. ... 44 0.017
CP000438_2409(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 44 0.017
FM209186_2474(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 44 0.017
CP000230_820(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170... 44 0.017
CP000880_3229(CP000880|pid:none) Salmonella enterica subsp. ariz... 43 0.029
CP000753_2308(CP000753|pid:none) Shewanella baltica OS185, compl... 43 0.037
CP000964_4797(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 43 0.037
AY811238_1(AY811238|pid:none) Schistosoma japonicum SJCHGC04036 ... 42 0.049
CP000937_1327(CP000937|pid:none) Francisella philomiragia subsp.... 42 0.049
AP006725_619(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044... 42 0.049
AP008232_1080(AP008232|pid:none) Sodalis glossinidius str. 'mors... 42 0.064
BX950851_411(BX950851|pid:none) Erwinia carotovora subsp. atrose... 42 0.064
CP001600_2235(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 41 0.11
(Q55DF5) RecName: Full=JmjC domain-containing protein D; AltName... 41 0.11
CP000109_1132(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 40 0.19
CP001142_106(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 39 0.41
BC109272_1(BC109272|pid:none) Homo sapiens jumonji domain contai... 39 0.41
AC097717_2(AC097717|pid:none) Homo sapiens BAC clone RP11-650N19... 39 0.41
BX294155_148(BX294155|pid:none) Rhodopirellula baltica SH 1 comp... 39 0.70
DQ223652_17(DQ223652|pid:none) Streptomyces hygroscopicus subsp.... 39 0.70
(Q9H9V9) RecName: Full=JmjC domain-containing protein 4; AltName... 39 0.70
AK022579_1(AK022579|pid:none) Homo sapiens cDNA FLJ12517 fis, cl... 39 0.70
CP000113_4486(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 38 0.92
CP001278_4(CP001278|pid:none) Candidatus Hamiltonella defensa 5A... 38 1.2
CP000081_290(CP000081|pid:none) Leishmania major chromosome 35, ... 38 1.2
AL136378_3(AL136378|pid:none) Human DNA sequence from clone RP5-... 38 1.2
AE008923_1514(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 37 1.6
CP000094_1842(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 37 1.6
AK023030_1(AK023030|pid:none) Homo sapiens cDNA FLJ12968 fis, cl... 37 2.0
CP000712_1620(CP000712|pid:none) Pseudomonas putida F1, complete... 37 2.0
(Q08BV2) RecName: Full=JmjC domain-containing protein C2orf60 ho... 37 2.7
CP000923_262(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 37 2.7
AM039952_1580(AM039952|pid:none) Xanthomonas campestris pv. vesi... 36 3.5
AE013598_2004(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 36 4.6
CP000949_3524(CP000949|pid:none) Pseudomonas putida W619, comple... 36 4.6
CP000967_2823(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 36 4.6
AC079357_1(AC079357|pid:none) Oryza sativa (japonica cultivar-gr... 35 6.0
BC153446_1(BC153446|pid:none) Danio rerio zgc:173863, mRNA (cDNA... 35 7.8
AE003849_1548(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 35 7.8
BA000040_5564(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 35 7.8
BT049630_1(BT049630|pid:none) Salmo salar clone ssal-sjb-007-184... 35 7.8
(B8CI04) RecName: Full=Probable ubiquinone biosynthesis protein ... 35 7.8
>(Q54K96) RecName: Full=JmjC domain-containing protein G;
Length = 514
Score = 616 bits (1588), Expect = e-175
Identities = 301/309 (97%), Positives = 302/309 (97%)
Frame = +3
Query: 168 LTKSVPQVSSQPLRPTKLVPKKKTEIREININDIGSNELSVADQRVEADGVLAGLISPTI 347
LTKSVPQVSSQPLRPTKLVPKKKTEIREININDIGSNELSVADQRVEADGVLAGLISPTI
Sbjct: 41 LTKSVPQVSSQPLRPTKLVPKKKTEIREININDIGSNELSVADQRVEADGVLAGLISPTI 100
Query: 348 IEDFYDQYFGQKHLYVKRNGDNIYKNFFTKDSLDKMLRNNLMKFTENVDVTNYVDFQRIT 527
IEDFYDQYFGQKHLYVKRNGDNIYKNFFTKDSLDKMLRNNLMKFTENVDVTNYVDFQRIT
Sbjct: 101 IEDFYDQYFGQKHLYVKRNGDNIYKNFFTKDSLDKMLRNNLMKFTENVDVTNYVDFQRIT 160
Query: 528 LNPEGRAYPSLVWKHYKEGCSVRLLNPQTFNSNVWKLCSTLQTHFQCGVGANIYLTPAGA 707
LNPEGRAYPSLVWKHYKEGCSVRLLNPQTFNSNVWKLCSTLQTHFQCGVGANIYLTPAGA
Sbjct: 161 LNPEGRAYPSLVWKHYKEGCSVRLLNPQTFNSNVWKLCSTLQTHFQCGVGANIYLTPAGA 220
Query: 708 QGFAPHYDDVDVFILQLEGKKEWRLYKPRDANEVLPKKSSENFTQEEIGEPYFTVTLEAG 887
QGFAPHYDDVDVFILQLEGKKEWRLYKPRDANEVLPKKSSENFTQEEIGEPYFTVTLEAG
Sbjct: 221 QGFAPHYDDVDVFILQLEGKKEWRLYKPRDANEVLPKKSSENFTQEEIGEPYFTVTLEAG 280
Query: 888 DLLYFPRGVIHQAVSPSDVHSLHITVSTYLNNTWGDLIGKVLNRALEIANEECLEFREGF 1067
DLLYFPRGVIHQAVSPSDVHSLHITVSTYLNNTWGDLIGKVLNRALEIANEECLEFREG
Sbjct: 281 DLLYFPRGVIHQAVSPSDVHSLHITVSTYLNNTWGDLIGKVLNRALEIANEECLEFREGL 340
Query: 1068 TKRLYSILG 1094
+ LG
Sbjct: 341 PRDYTQYLG 349
Score = 313 bits (803), Expect = 9e-84
Identities = 163/186 (87%), Positives = 168/186 (90%), Gaps = 2/186 (1%)
Frame = +1
Query: 1030 LQMRNA*SLE--KGLPRDYTQYLGVIHSDKVGDERRKELTDKVGTLWDKLGQLLPIDIGA 1203
L++ N LE +GLPRDYTQYLGVIHSDKVGDERRKELTDKVGTLWDKLGQLLPIDIGA
Sbjct: 326 LEIANEECLEFREGLPRDYTQYLGVIHSDKVGDERRKELTDKVGTLWDKLGQLLPIDIGA 385
Query: 1204 DQMAVKYLLDSLPPVLTQLEKKHSIEDETTSMKIKPETRFRLIRADSVRLVVEDIAILFH 1383
DQMAVKYLLDSLPPVLTQLEKKHSIEDETTSMKIKPETRFRLIRADSVRLVVEDIAILFH
Sbjct: 386 DQMAVKYLLDSLPPVLTQLEKKHSIEDETTSMKIKPETRFRLIRADSVRLVVEDIAILFH 445
Query: 1384 NADNTRIYHLVGEEPGVVEFTLECVDALEHIIDSYPSYIYTKDLPIEA**SKIRCSFSFI 1563
NADNTRIYH VGEEPGVVEFTLECVDALEHIIDSYPSYIYTKDLPIE K+ +
Sbjct: 446 NADNTRIYHQVGEEPGVVEFTLECVDALEHIIDSYPSYIYTKDLPIEDDDQKLDVVSALY 505
Query: 1564 *KGLIM 1581
KGLIM
Sbjct: 506 EKGLIM 511
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,459,761,429
Number of extensions: 50482800
Number of successful extensions: 126252
Number of sequences better than 10.0: 208
Number of HSP's gapped: 125975
Number of HSP's successfully gapped: 223
Length of query: 535
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 402
Effective length of database: 614,796,874
Effective search space: 247148343348
Effective search space used: 247148343348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
8 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |