Contig-U10367-1
Contig ID Contig-U10367-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10367-1 (Contig-U10367-1Q) /CSM_Contig/Contig-U10367-1Q.Seq.d
CAACTCGATGTGTCAATAAAAAAAAAGAAATGTTGAAGTCAAAAATATCA
TTTATTTCAAGATGTACCTATAAAATAATAGAAGCCCAAAAATTTGAGGC
CCAATATCTAACGAAAATAAAACCATCAAACCAAAATATAAATCCTAGGA
AATCAAAATTTTTGAAATTTTTTAAAGACCAGCCCAAAATTACAAATAAT
ACAAATAAAACAAAAACAAAAGCAAAAGCAAATGCAAAAGCAACACCATC
AGAAACTACAGAAGCAACAACAAAAGAAAAAAATAAAGTTATGACATTTC
TTGGTAAACCATTTGAATTCAACAGATCTAGATATATTGAAATATCTAAA
GAAAATCAAATTCAATTATTTTTTAGAGCATTAAAACATTGTGGTGGTTC
ATCGATTTCAGATATTTATAAAATTTCCTATAGAGAATTTACAAATTCAC
CAGAAGGTCAATCTATATTTTATTTTTTTGGTGGATCAATGGTTAGAATG
TGTTATACATTATTTCCAGATTTCGAATGGGCACCATGGGTTATTTAAAA
AAGAATAGTGATTTATCAAAAATGAGAAGAGAAAAAAGATTATGATTATA
GTAGAGAAATTAAATGGTTCGCTGCAAAACACAATATCAAAGATTCAAAT
TTAGATGACTGGTATAAAATGAAATTAACCGACCTTTTAAAGGAATGCAA
GATACGAAATCTCTTTAGTATTGGTTTGGTAGATTTCATTCGAAAAGCGT
ACCCACATCATAAATTTTATTTATTTAAATTCCATAAAATTATATTGTGG
TGGAAGTATCCAGACGGACTTGACGATTTCCGTCAATATTTACTCAAAGA
AACACAATTCACTTCAATGGAACAATTTTATTTATTGTCAAAAACAAAAT
TCACTTCTTTGGGAGGTACCTCGCTTCTTTTATACTACAAATATGATTTA
CACCAAATCTATAGCATATTATTTCCAGATTATCCTTGGAATAAAGAATT
ACTAACACCAGAGGCCTTTCAACAACTTACAAATCCAAAGTTTGAAAAAA
TAGAACCAATTTCCAAAAATTTCGATTTTCCAAAATTTAAAAAGAAAAAA
TCAAAATTTAAATATGAAACTTTTGCTCCGACTCAAATAGAAACTCAACA
AGAATTACTCAATAAAATTAANAAAATCTTAAATAAC

Gap no gap
Contig length 1187
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 873578
End point 874715
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 4
Link to clone list U10367
List of clone(s)

est1=VFB338E,1,1180
est2=VFG134E,2,1188
est3=VFM303E,2,1182
est4=VFI315E,6,1182
Translated Amino Acid sequence
trcvnkkkemlkskisfisrctykiieaqkfeaqyltkikpsnqninprkskflkffkdq
pkitnntnktktkakanakatpsetteattkeknkvmtflgkpfefnrsryieiskenqi
qlffralkhcggssisdiykisyreftnspegqsifyffggsmvrmcytlfpdfewapwv
i*kriviyqk*EEKKDYDYSREIKWFAAKHNIKDSNLDDWYKMKLTDLLKECKIRNLFSI
GLVDFIRKAYPHHKFYLFKFHKIILWWKYPDGLDDFRQYLLKETQFTSMEQFYLLSKTKF
TSLGGTSLLLYYKYDLHQIYSILFPDYPWNKELLTPEAFQQLTNPKFEKIEPISKNFDFP
KFKKKKSKFKYETFAPTQIETQQELLNKIXKILNN


Translated Amino Acid sequence (All Frames)
Frame A:
qldvsikkkkc*sqkyhlfqdvpik**kpknlrpni*rk*nhqtki*ilgnqnf*nflkt
spklqiiqikqkqkqkqmqkqhhqklqkqqqkkkikl*hflvnhlnstdldilkylkkik
fnyfleh*nivvvhrfqifikfpienlqihqkvnlyfiflvdqwlecvihyfqisnghhg
lfkke**fiknekrkkimiiveklngslqntiskiqi*mtgik*n*ptf*rnaryeislv
lvw*isfekrthiinfiylnsiklycggsiqtdltisvniyskkhnslqwnnfiycqkqn
sllwevprffyttnmiytksiayyfqiilgikny*hqrpfnnlqiqslkk*nqfpkisif
qnlkrknqnlnmklllrlk*klnknysiklxks*i


Frame B:
nsmcq*kkrnvevkniiyfkmyl*nnrspki*gpisnenktikpkyks*eikifeif*rp
aqnyk*yk*nknkskskcksntirnyrsnnkrkk*sydisw*ti*iqqi*iy*ni*rksn
siif*siktlwwfidfryl*nfl*riykftrrsiyilffwwing*nvlyiisrfrmgtmg
ylkknsdlskmrrekrl*l**rn*mvrcktqyqrfkfr*lv*neinrpfkgmqdtksl*y
wfgrfhsksvpts*ilfi*ip*nyivvevsrrt*rfpsiftqrntihfngtilfivknki
hffgrylasfilqi*ftpnl*hiisrlsle*ritntrglsttykskv*knrtnfqkfrfs
ki*kekiki*i*nfcsdsnrnstritq*n*xnlk*


Frame C:
trcvnkkkemlkskisfisrctykiieaqkfeaqyltkikpsnqninprkskflkffkdq
pkitnntnktktkakanakatpsetteattkeknkvmtflgkpfefnrsryieiskenqi
qlffralkhcggssisdiykisyreftnspegqsifyffggsmvrmcytlfpdfewapwv
i*kriviyqk*EEKKDYDYSREIKWFAAKHNIKDSNLDDWYKMKLTDLLKECKIRNLFSI
GLVDFIRKAYPHHKFYLFKFHKIILWWKYPDGLDDFRQYLLKETQFTSMEQFYLLSKTKF
TSLGGTSLLLYYKYDLHQIYSILFPDYPWNKELLTPEAFQQLTNPKFEKIEPISKNFDFP
KFKKKKSKFKYETFAPTQIETQQELLNKIXKILNN


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10367-1 (Contig-U10367-1Q)
/CSM_Contig/Contig-U10367-1Q.Seq.d
(1187 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10367-1 (Contig-U10367-1Q) /CSM_Contig/Conti... 1489 0.0
Contig-U11254-1 (Contig-U11254-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11204-1 (Contig-U11204-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U10123-1 (Contig-U10123-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U06313-1 (Contig-U06313-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U04514-1 (Contig-U04514-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U01854-1 (Contig-U01854-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti... 36 0.084
Contig-U12062-1 (Contig-U12062-1Q) /CSM_Contig/Conti... 36 0.084
Contig-U11810-1 (Contig-U11810-1Q) /CSM_Contig/Conti... 36 0.084

>Contig-U10367-1 (Contig-U10367-1Q) /CSM_Contig/Contig-U10367-1Q.Seq.d
Length = 1187

Score = 1489 bits (751), Expect = 0.0
Identities = 765/772 (99%)
Strand = Plus / Plus


Query: 284 taaagttatgacatttcttggtaaaccatttgaattcaacagatctagatatattgaaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taaagttatgacatttcttggtaaaccatttgaattcaacagatctagatatattgaaat 343


Query: 344 atctaaagaaaatcaaattcaattattttttagagcattaaaacattgtggtggttcatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atctaaagaaaatcaaattcaattattttttagagcattaaaacattgtggtggttcatc 403


Query: 404 gatttcagatatttataaaatttcctatagagaatttacaaattcaccagaaggtcaatc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gatttcagatatttataaaatttcctatagagaatttacaaattcaccagaaggtcaatc 463


Query: 464 tatattttannnnnnnggtggatcaatggttagaatgtgttatacattatttccagattt 523
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tatattttatttttttggtggatcaatggttagaatgtgttatacattatttccagattt 523


Query: 524 cgaatgggcaccatgggttatttaaaaaagaatagtgatttatcaaaaatgagaagagaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cgaatgggcaccatgggttatttaaaaaagaatagtgatttatcaaaaatgagaagagaa 583


Query: 584 aaaagattatgattatagtagagaaattaaatggttcgctgcaaaacacaatatcaaaga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaaagattatgattatagtagagaaattaaatggttcgctgcaaaacacaatatcaaaga 643


Query: 644 ttcaaatttagatgactggtataaaatgaaattaaccgaccttttaaaggaatgcaagat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttcaaatttagatgactggtataaaatgaaattaaccgaccttttaaaggaatgcaagat 703


Query: 704 acgaaatctctttagtattggtttggtagatttcattcgaaaagcgtacccacatcataa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 acgaaatctctttagtattggtttggtagatttcattcgaaaagcgtacccacatcataa 763


Query: 764 attttatttatttaaattccataaaattatattgtggtggaagtatccagacggacttga 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 attttatttatttaaattccataaaattatattgtggtggaagtatccagacggacttga 823


Query: 824 cgatttccgtcaatatttactcaaagaaacacaattcacttcaatggaacaattttattt 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 cgatttccgtcaatatttactcaaagaaacacaattcacttcaatggaacaattttattt 883


Query: 884 attgtcaaaaacaaaattcacttctttgggaggtacctcgcttcttttatactacaaata 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 attgtcaaaaacaaaattcacttctttgggaggtacctcgcttcttttatactacaaata 943


Query: 944 tgatttacaccaaatctatagcatattatttccagattatccttggaataaagaattact 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 tgatttacaccaaatctatagcatattatttccagattatccttggaataaagaattact 1003


Query: 1004 aacaccagaggcctttcaacaacttacaaatccaaagtttgaaaaaatagaa 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 aacaccagaggcctttcaacaacttacaaatccaaagtttgaaaaaatagaa 1055


Score = 252 bits (127), Expect = 8e-67
Identities = 127/127 (100%)
Strand = Plus / Plus


Query: 27 gaaatgttgaagtcaaaaatatcatttatttcaagatgtacctataaaataatagaagcc 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 gaaatgttgaagtcaaaaatatcatttatttcaagatgtacctataaaataatagaagcc 86


Query: 87 caaaaatttgaggcccaatatctaacgaaaataaaaccatcaaaccaaaatataaatcct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 caaaaatttgaggcccaatatctaacgaaaataaaaccatcaaaccaaaatataaatcct 146


Query: 147 aggaaat 153
|||||||
Sbjct: 147 aggaaat 153


Score = 143 bits (72), Expect = 5e-34
Identities = 75/75 (100%)
Strand = Plus / Plus


Query: 1113 tatgaaacttttgctccgactcaaatagaaactcaacaagaattactcaataaaattaan 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 tatgaaacttttgctccgactcaaatagaaactcaacaagaattactcaataaaattaan 1172


Query: 1173 aaaatcttaaataac 1187
|||||||||||||||
Sbjct: 1173 aaaatcttaaataac 1187


>Contig-U11254-1 (Contig-U11254-1Q) /CSM_Contig/Contig-U11254-1Q.Seq.d
Length = 1346

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 355 atcaaattcaattatttttta 375
|||||||||||||||||||||
Sbjct: 1020 atcaaattcaattatttttta 1040


>Contig-U11204-1 (Contig-U11204-1Q) /CSM_Contig/Contig-U11204-1Q.Seq.d
Length = 1536

Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 761 taaattttatttatttaaat 780
||||||||||||||||||||
Sbjct: 8 taaattttatttatttaaat 27


Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 884 attgtcaaaaacaaaa 899
||||||||||||||||
Sbjct: 1167 attgtcaaaaacaaaa 1182


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,519
Number of Sequences: 6905
Number of extensions: 22519
Number of successful extensions: 2729
Number of sequences better than 10.0: 307
length of query: 1187
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1171
effective length of database: 5,564,391
effective search space: 6515901861
effective search space used: 6515901861
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.19
Homology vs DNA
Query= Contig-U10367-1 (Contig-U10367-1Q) /CSM_Contig/Contig-U10367-1Q.Seq.d
(1187 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ431965) Dictyostelium discoideum cDNA clone:ddv17n03, 3' ... 825 0.0 3
(BJ429414) Dictyostelium discoideum cDNA clone:ddv3l09, 3' e... 833 0.0 3
(BJ431215) Dictyostelium discoideum cDNA clone:ddv13c09, 3' ... 833 0.0 3
(BJ434817) Dictyostelium discoideum cDNA clone:ddv25f01, 3' ... 833 0.0 2
(BJ412892) Dictyostelium discoideum cDNA clone:ddv13c09, 5' ... 375 e-174 4
(BJ416130) Dictyostelium discoideum cDNA clone:ddv25f01, 5' ... 375 e-174 4
(BJ413854) Dictyostelium discoideum cDNA clone:ddv17n03, 5' ... 375 e-171 3
(BJ411200) Dictyostelium discoideum cDNA clone:ddv3l09, 5' e... 375 e-165 5
(AM423433) Vitis vinifera contig VV78X174301.7, whole genome... 52 0.049 1
(ET932279) CHO_OF423xe09f1.ab1 CHO_OF Nicotiana tabacum geno... 36 0.12 3
(ER678973) SB_BBc103-G18.F SB_BBc Sorghum bicolor genomic 5'... 38 0.55 2
(ER670976) SB_BBc16-I21.F SB_BBc Sorghum bicolor genomic 5',... 38 0.55 2
(CW500511) fsbb001f295n21k0 Sorghum methylation filtered lib... 38 0.56 2
(ED730616) GM_WBb0087I15.f GM_WBb Glycine max genomic clone ... 48 0.77 1
(CZ521908) GMW2-87I15a.b1 GMW2 Glycine max genomic, genomic ... 48 0.77 1
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 40 0.97 18
(CU571285) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.1 8
(AC152845) Otolemur garnettii clone CH256-542F4, WORKING DRA... 34 1.3 6
(AL157814) Human DNA sequence from clone RP11-285E18 on chro... 42 1.4 3
(FI022488) CHO_OF6930xl04f1.ab1 CHO_OF6 Nicotiana tabacum ge... 32 1.5 3
(EU341305) Clostridium botulinum strain A1/A2 boNT/A gene cl... 40 1.7 3
(EJ682945) 1092955146277 Global-Ocean-Sampling_GS-30-02-01-1... 32 2.1 2
(EJ667621) 1092955047260 Global-Ocean-Sampling_GS-30-02-01-1... 32 2.1 2
(AC091896) Homo sapiens chromosome 5 clone RP11-143O15, WORK... 40 2.7 6
(AC145979) Gallus gallus BAC clone CH261-10P22 from chromoso... 46 3.0 1
(AC102367) Mus musculus chromosome 3, clone RP23-211J6, comp... 46 3.0 1
(AC020972) Mus musculus chromosome 18 clone RP23-6P18, compl... 46 3.0 1
(CT954321) N.leucogenys DNA sequence from clone CH271-86M19. 46 3.0 1
(AC147212) Pan troglodytes BAC clone RP43-126P16 from chromo... 46 3.0 1
(AP009598) Solanum lycopersicum DNA, chromosome 8, clone: C0... 46 3.0 1
(AM486123) Vitis vinifera contig VV78X037708.3, whole genome... 46 3.0 1
(AM444847) Vitis vinifera contig VV78X249500.6, whole genome... 46 3.0 1
(AM434008) Vitis vinifera contig VV78X123966.28, whole genom... 46 3.0 1
(AM433275) Vitis vinifera contig VV78X095486.5, whole genome... 46 3.0 1
(AC004862) Homo sapiens PAC clone RP4-697H17 from 7, complet... 46 3.0 1
(AC135186) Mus musculus chromosome UNK clone RP24-258K18, WO... 46 3.0 1
(CU638722) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.0 1
(AC067723) Homo sapiens chromosome 3 clone RP11-539H11, WORK... 46 3.0 1
(AC212597) Pan troglodytes chromosome 7 clone CH251-582D9, W... 46 3.0 1
(ER399858) 1095349047191 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.0 1
(EJ165579) 1092344064072 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.0 1
(DX437599) BE1037_L06_R IASMA L1 HindIII BAC library Vitis v... 46 3.0 1
(DX437528) BE1037_H07_R IASMA L1 HindIII BAC library Vitis v... 46 3.0 1
(DU417549) 1098415820419 CHORI-243 Ovis aries genomic clone ... 46 3.0 1
(CT558114) A BAC library has been constructed from cultivar ... 46 3.0 1
(CT486268) A BAC library has been constructed from cultivar ... 46 3.0 1
(DB303161) Homo sapiens cDNA clone BRAMY3005969, 3' end, mRN... 46 3.0 1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 46 3.0 1
(ET932347) CHO_OF423xe09r1.ab1 CHO_OF Nicotiana tabacum geno... 38 3.1 2
(EA102735) Sequence 118 from patent US 7195870. 32 3.6 5
(AX323650) Sequence 138 from Patent WO0192565. 32 3.6 5
(AX277955) Sequence 118 from Patent WO0177375. 32 3.6 5
(CE234782) tigr-gss-dog-17000333375035 Dog Library Canis lup... 32 3.8 3
(AC209216) Zea mays chromosome 6 clone CH201-461A4; ZMMBBc04... 44 4.3 3
(AC144483) Medicago truncatula chromosome 8 clone mth2-12f13... 38 4.8 5
(CR927050) Zebrafish DNA sequence from clone DKEY-217G21. 34 5.5 2
(CU694223) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 5.9 2
(BX255936) Zebrafish DNA sequence from clone CH211-113K19 in... 34 5.9 2
(EJ718850) 1092959440183 Global-Ocean-Sampling_GS-30-02-01-1... 34 5.9 3
(CU658288) Zebrafish DNA sequence from clone CH73-79D13. 34 6.0 2
(CT571268) Mouse DNA sequence from clone RP23-275M21 on chro... 44 6.8 6
(ED810307) ML__Ba0053B13f ML__Ba Mimulus lewisii genomic, ge... 32 7.4 2
(EK561270) 1095521003658 Global-Ocean-Sampling_GS-32-01-01-1... 34 7.6 2
(EK565902) 1095521040224 Global-Ocean-Sampling_GS-32-01-01-1... 34 7.6 2
(AC107399) Homo sapiens BAC clone RP11-755N14 from 4, comple... 38 7.9 3
(AC093311) Homo sapiens chromosome 5 clone RP11-461G12, comp... 36 8.0 5
(AC150843) Medicago truncatula clone mth2-103p8, complete se... 36 8.3 5
(Z68132) Caenorhabditis elegans Cosmid F09C8. 38 8.9 5
(CE312585) tigr-gss-dog-17000360879346 Dog Library Canis lup... 34 9.9 2

>(BJ431965) Dictyostelium discoideum cDNA clone:ddv17n03, 3' end,
single read.
Length = 717

Score = 825 bits (416), Expect(3) = 0.0
Identities = 419/420 (99%)
Strand = Plus / Minus


Query: 610 ttaaatggttcgctgcaaaacacaatatcaaagattcaaatttagatgactggtataaaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttaaatggttcgctgcaaaacacaatatcaaagattcaaatttagatgactggtataaaa 514


Query: 670 tgaaattaaccgaccttttaaaggaatgcaagatacgaaatctctttagtattggtttgg 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgaaattaaccgaccttttaaaggaatgcaagatacgaaatctctttagtattggtttgg 454


Query: 730 tagatttcattcgaaaagcgtacccacatcataaattttatttatttaaattccataaaa 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagatttcattcgaaaagcgtacccacatcataaattttatttatttaaattccataaaa 394


Query: 790 ttatattgtggtggaagtatccagacggacttgacgatttccgtcaatatttactcaaag 849
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 393 ttatattgtggtggaagtatccagacggacttgacgatttccgtcaatattcactcaaag 334


Query: 850 aaacacaattcacttcaatggaacaattttatttattgtcaaaaacaaaattcacttctt 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaacacaattcacttcaatggaacaattttatttattgtcaaaaacaaaattcacttctt 274


Query: 910 tgggaggtacctcgcttcttttatactacaaatatgatttacaccaaatctatagcatat 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgggaggtacctcgcttcttttatactacaaatatgatttacaccaaatctatagcatat 214


Query: 970 tatttccagattatccttggaataaagaattactaacaccagaggcctttcaacaactta 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tatttccagattatccttggaataaagaattactaacaccagaggcctttcaacaactta 154

Score = 131 bits (66), Expect(3) = 0.0
Identities = 69/69 (100%)
Strand = Plus / Minus


Query: 1114 atgaaacttttgctccgactcaaatagaaactcaacaagaattactcaataaaattaana 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atgaaacttttgctccgactcaaatagaaactcaacaagaattactcaataaaattaana 10


Query: 1174 aaatcttaa 1182
|||||||||
Sbjct: 9 aaatcttaa 1

Score = 119 bits (60), Expect(3) = 0.0
Identities = 60/60 (100%)
Strand = Plus / Minus


Query: 480 ggtggatcaatggttagaatgtgttatacattatttccagatttcgaatgggcaccatgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggtggatcaatggttagaatgtgttatacattatttccagatttcgaatgggcaccatgg 641

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,146,370,030
Number of extensions: 78794697
Number of successful extensions: 7050150
Number of sequences better than 10.0: 71
Length of query: 1187
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1163
Effective length of database: 97,308,875,965
Effective search space: 113170222747295
Effective search space used: 113170222747295
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10367-1 (Contig-U10367-1Q) /CSM_Contig/Contig-U10367-1Q.Seq.d
(1187 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116330_18(AC116330|pid:none) Dictyostelium discoideum chromoso... 36 3.0
CP000509_3717(CP000509|pid:none) Nocardioides sp. JS614, complet... 35 5.2
(Q97IR8) RecName: Full=Fructose-1,6-bisphosphatase class 3; ... 35 6.7

>AC116330_18(AC116330|pid:none) Dictyostelium discoideum chromosome
2 map 3191214-3323468 strain AX4, complete sequence.
Length = 584

Score = 35.8 bits (81), Expect = 3.0
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 44/157 (28%)
Frame = +3

Query: 651 LDDWYKMKLTDLLKECK-----------------IRNLFSIGLVDFIRKAYPHHKFYLFK 779
L+DWY + +T + E K R+ F + ++ AYP ++ K
Sbjct: 3 LNDWYNVNITKIFSENKELKNSEISKPILKLQQIFRDNFEYSFYEMLKFAYPKEEWDRVK 62

Query: 780 FHKII----LWWKYPDGLDDFRQYLLKETQFTS--------------------MEQFYLL 887
K I +W D +D F Q + +F ++Q+Y +
Sbjct: 63 LVKSIDRNKYFWLNQDNIDSFIQSFTTDMKFDQTHRKFDRFRYSDENETDNEYLKQWYKV 122

Query: 888 SKTKFTSLGGTSLLLYYKYDLHQIYSILFPDY---PW 989
K F G ++ + ++ +P+Y PW
Sbjct: 123 QKNDFIKFKGRPIIAQFNDSIYGFLCSYYPNYNFKPW 159

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,733,110,418
Number of extensions: 33299274
Number of successful extensions: 74361
Number of sequences better than 10.0: 3
Number of HSP's gapped: 74342
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 264
Effective length of database: 621,205,444
Effective search space: 163998237216
Effective search space used: 163998237216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.41 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.07 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U10367-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0