Contig-U10367-1 |
Contig ID |
Contig-U10367-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1187 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
873578 |
End point |
874715 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
4 |
Number of EST |
4 |
Link to clone list |
U10367 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.19 |
Homology vs DNA |
Query= Contig-U10367-1 (Contig-U10367-1Q) /CSM_Contig/Contig-U10367-1Q.Seq.d (1187 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ431965) Dictyostelium discoideum cDNA clone:ddv17n03, 3' ... 825 0.0 3 (BJ429414) Dictyostelium discoideum cDNA clone:ddv3l09, 3' e... 833 0.0 3 (BJ431215) Dictyostelium discoideum cDNA clone:ddv13c09, 3' ... 833 0.0 3 (BJ434817) Dictyostelium discoideum cDNA clone:ddv25f01, 3' ... 833 0.0 2 (BJ412892) Dictyostelium discoideum cDNA clone:ddv13c09, 5' ... 375 e-174 4 (BJ416130) Dictyostelium discoideum cDNA clone:ddv25f01, 5' ... 375 e-174 4 (BJ413854) Dictyostelium discoideum cDNA clone:ddv17n03, 5' ... 375 e-171 3 (BJ411200) Dictyostelium discoideum cDNA clone:ddv3l09, 5' e... 375 e-165 5 (AM423433) Vitis vinifera contig VV78X174301.7, whole genome... 52 0.049 1 (ET932279) CHO_OF423xe09f1.ab1 CHO_OF Nicotiana tabacum geno... 36 0.12 3 (ER678973) SB_BBc103-G18.F SB_BBc Sorghum bicolor genomic 5'... 38 0.55 2 (ER670976) SB_BBc16-I21.F SB_BBc Sorghum bicolor genomic 5',... 38 0.55 2 (CW500511) fsbb001f295n21k0 Sorghum methylation filtered lib... 38 0.56 2 (ED730616) GM_WBb0087I15.f GM_WBb Glycine max genomic clone ... 48 0.77 1 (CZ521908) GMW2-87I15a.b1 GMW2 Glycine max genomic, genomic ... 48 0.77 1 (AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 40 0.97 18 (CU571285) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.1 8 (AC152845) Otolemur garnettii clone CH256-542F4, WORKING DRA... 34 1.3 6 (AL157814) Human DNA sequence from clone RP11-285E18 on chro... 42 1.4 3 (FI022488) CHO_OF6930xl04f1.ab1 CHO_OF6 Nicotiana tabacum ge... 32 1.5 3 (EU341305) Clostridium botulinum strain A1/A2 boNT/A gene cl... 40 1.7 3 (EJ682945) 1092955146277 Global-Ocean-Sampling_GS-30-02-01-1... 32 2.1 2 (EJ667621) 1092955047260 Global-Ocean-Sampling_GS-30-02-01-1... 32 2.1 2 (AC091896) Homo sapiens chromosome 5 clone RP11-143O15, WORK... 40 2.7 6 (AC145979) Gallus gallus BAC clone CH261-10P22 from chromoso... 46 3.0 1 (AC102367) Mus musculus chromosome 3, clone RP23-211J6, comp... 46 3.0 1 (AC020972) Mus musculus chromosome 18 clone RP23-6P18, compl... 46 3.0 1 (CT954321) N.leucogenys DNA sequence from clone CH271-86M19. 46 3.0 1 (AC147212) Pan troglodytes BAC clone RP43-126P16 from chromo... 46 3.0 1 (AP009598) Solanum lycopersicum DNA, chromosome 8, clone: C0... 46 3.0 1 (AM486123) Vitis vinifera contig VV78X037708.3, whole genome... 46 3.0 1 (AM444847) Vitis vinifera contig VV78X249500.6, whole genome... 46 3.0 1 (AM434008) Vitis vinifera contig VV78X123966.28, whole genom... 46 3.0 1 (AM433275) Vitis vinifera contig VV78X095486.5, whole genome... 46 3.0 1 (AC004862) Homo sapiens PAC clone RP4-697H17 from 7, complet... 46 3.0 1 (AC135186) Mus musculus chromosome UNK clone RP24-258K18, WO... 46 3.0 1 (CU638722) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.0 1 (AC067723) Homo sapiens chromosome 3 clone RP11-539H11, WORK... 46 3.0 1 (AC212597) Pan troglodytes chromosome 7 clone CH251-582D9, W... 46 3.0 1 (ER399858) 1095349047191 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.0 1 (EJ165579) 1092344064072 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.0 1 (DX437599) BE1037_L06_R IASMA L1 HindIII BAC library Vitis v... 46 3.0 1 (DX437528) BE1037_H07_R IASMA L1 HindIII BAC library Vitis v... 46 3.0 1 (DU417549) 1098415820419 CHORI-243 Ovis aries genomic clone ... 46 3.0 1 (CT558114) A BAC library has been constructed from cultivar ... 46 3.0 1 (CT486268) A BAC library has been constructed from cultivar ... 46 3.0 1 (DB303161) Homo sapiens cDNA clone BRAMY3005969, 3' end, mRN... 46 3.0 1 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 46 3.0 1 (ET932347) CHO_OF423xe09r1.ab1 CHO_OF Nicotiana tabacum geno... 38 3.1 2 (EA102735) Sequence 118 from patent US 7195870. 32 3.6 5 (AX323650) Sequence 138 from Patent WO0192565. 32 3.6 5 (AX277955) Sequence 118 from Patent WO0177375. 32 3.6 5 (CE234782) tigr-gss-dog-17000333375035 Dog Library Canis lup... 32 3.8 3 (AC209216) Zea mays chromosome 6 clone CH201-461A4; ZMMBBc04... 44 4.3 3 (AC144483) Medicago truncatula chromosome 8 clone mth2-12f13... 38 4.8 5 (CR927050) Zebrafish DNA sequence from clone DKEY-217G21. 34 5.5 2 (CU694223) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 5.9 2 (BX255936) Zebrafish DNA sequence from clone CH211-113K19 in... 34 5.9 2 (EJ718850) 1092959440183 Global-Ocean-Sampling_GS-30-02-01-1... 34 5.9 3 (CU658288) Zebrafish DNA sequence from clone CH73-79D13. 34 6.0 2 (CT571268) Mouse DNA sequence from clone RP23-275M21 on chro... 44 6.8 6 (ED810307) ML__Ba0053B13f ML__Ba Mimulus lewisii genomic, ge... 32 7.4 2 (EK561270) 1095521003658 Global-Ocean-Sampling_GS-32-01-01-1... 34 7.6 2 (EK565902) 1095521040224 Global-Ocean-Sampling_GS-32-01-01-1... 34 7.6 2 (AC107399) Homo sapiens BAC clone RP11-755N14 from 4, comple... 38 7.9 3 (AC093311) Homo sapiens chromosome 5 clone RP11-461G12, comp... 36 8.0 5 (AC150843) Medicago truncatula clone mth2-103p8, complete se... 36 8.3 5 (Z68132) Caenorhabditis elegans Cosmid F09C8. 38 8.9 5 (CE312585) tigr-gss-dog-17000360879346 Dog Library Canis lup... 34 9.9 2
>(BJ431965) Dictyostelium discoideum cDNA clone:ddv17n03, 3' end, single read. Length = 717
Score = 825 bits (416), Expect(3) = 0.0 Identities = 419/420 (99%) Strand = Plus / Minus
Query: 610 ttaaatggttcgctgcaaaacacaatatcaaagattcaaatttagatgactggtataaaa 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 ttaaatggttcgctgcaaaacacaatatcaaagattcaaatttagatgactggtataaaa 514
Query: 670 tgaaattaaccgaccttttaaaggaatgcaagatacgaaatctctttagtattggtttgg 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 tgaaattaaccgaccttttaaaggaatgcaagatacgaaatctctttagtattggtttgg 454
Query: 730 tagatttcattcgaaaagcgtacccacatcataaattttatttatttaaattccataaaa 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 tagatttcattcgaaaagcgtacccacatcataaattttatttatttaaattccataaaa 394
Query: 790 ttatattgtggtggaagtatccagacggacttgacgatttccgtcaatatttactcaaag 849 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 393 ttatattgtggtggaagtatccagacggacttgacgatttccgtcaatattcactcaaag 334
Query: 850 aaacacaattcacttcaatggaacaattttatttattgtcaaaaacaaaattcacttctt 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 aaacacaattcacttcaatggaacaattttatttattgtcaaaaacaaaattcacttctt 274
Query: 910 tgggaggtacctcgcttcttttatactacaaatatgatttacaccaaatctatagcatat 969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 tgggaggtacctcgcttcttttatactacaaatatgatttacaccaaatctatagcatat 214
Query: 970 tatttccagattatccttggaataaagaattactaacaccagaggcctttcaacaactta 1029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 tatttccagattatccttggaataaagaattactaacaccagaggcctttcaacaactta 154
Score = 131 bits (66), Expect(3) = 0.0 Identities = 69/69 (100%) Strand = Plus / Minus
Query: 1114 atgaaacttttgctccgactcaaatagaaactcaacaagaattactcaataaaattaana 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 atgaaacttttgctccgactcaaatagaaactcaacaagaattactcaataaaattaana 10
Query: 1174 aaatcttaa 1182 ||||||||| Sbjct: 9 aaatcttaa 1
Score = 119 bits (60), Expect(3) = 0.0 Identities = 60/60 (100%) Strand = Plus / Minus
Query: 480 ggtggatcaatggttagaatgtgttatacattatttccagatttcgaatgggcaccatgg 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 ggtggatcaatggttagaatgtgttatacattatttccagatttcgaatgggcaccatgg 641
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,146,370,030 Number of extensions: 78794697 Number of successful extensions: 7050150 Number of sequences better than 10.0: 71 Length of query: 1187 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1163 Effective length of database: 97,308,875,965 Effective search space: 113170222747295 Effective search space used: 113170222747295 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
4 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |